Citrus Sinensis ID: 023045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MGLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHcccHHHHccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHccccccccccEEEEEEcccccccHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGLRAYQILTCVSFFVLFPVihcwgndgHVAVCRIAQSRLREAAADAVKQLlpesadndlgsvctwadhvkfhyhwssalhfidtpdnlctyqynrdckdedgvkgrCVAGAINNYTTQLLSynsassshseyNLTEALLFLSHFigdihqplhvgftsdrggntidvHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWEtcsanntacpdvyaseGIKAACDWAykgvsegsvledeyfnsrLPIVKLRLAQGGVRLAATLNRIFG
Flexible Loop (DISEMBL)
MGLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKlrlaqggvrlAATLNRIFG
Low Complexity Region (SEG)
MGLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLsynsassshsEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Disordered region (IsUnstruct)
***RAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSAS**HSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRI**
Disordered Region (DISOPRED)
***RAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLS********SEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Disordered Region (DISEMBL)
MGLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Disordered Region (DISPRO)
*GLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q9C9G4	290	Endonuclease 2 OS=Arabido	yes	no	0.989	0.982	0.707	1e-121
F4JJL0	299	Endonuclease 4 OS=Arabido	no	no	0.923	0.889	0.582	2e-91
Q8LDW6	294	Endonuclease 3 OS=Arabido	no	no	0.940	0.921	0.533	4e-83
Q9SXA6	305	Endonuclease 1 OS=Arabido	no	no	0.920	0.868	0.529	1e-81
F4JJL3	296	Endonuclease 5 OS=Arabido	no	no	0.968	0.942	0.508	3e-80
P24021	287	Nuclease S1 OS=Aspergillu	yes	no	0.868	0.871	0.324	4e-24
P24504	270	Nuclease PA3 OS=Penicilli	N/A	no	0.826	0.881	0.318	6e-18
P24289	270	Nuclease P1 OS=Penicilliu	N/A	no	0.826	0.881	0.318	1e-17

>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/287 (70%), Positives = 237/287 (82%), Gaps = 2/287 (0%)

Query: 2   GLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLG 61
           GL    ++  V      P IH WG +GH  +C+IAQ+RL E AA AVK+LLPESA+ DL 
Sbjct: 6   GLHVVMMIITVWLLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLS 65

Query: 62  SVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLL 121
           S+C WAD VKF YHWSS LH+I+TPD  C+YQYNRDCKDE G KGRCVAGAI NYTTQLL
Sbjct: 66  SLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLL 124

Query: 122 SYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVW 181
           SY +A+SS S+YNLTEALLF+SHF+GDIHQPLHV + SD+GGNTI+VHWYTRK  LHH+W
Sbjct: 125 SYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIW 184

Query: 182 DNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKA 241
           D+NIIETAE   YNS ++G+VDA+++NITT+WAD VK+WETC+   TACPD+YASEGI+A
Sbjct: 185 DSNIIETAEADLYNSALEGMVDALKKNITTEWADQVKRWETCT-KKTACPDIYASEGIQA 243

Query: 242 ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           ACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGGVRLAATLNRIFG
Sbjct: 244 ACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIFG 290

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: 0EC: .EC: 1

>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1

 Score =  335 bits (860), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 156/268 (58%), Positives = 194/268 (72%), Gaps = 2/268 (0%)

Query: 23  CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHW--SSAL 80
           CWG +GH  VC+IA+S   E    AVK+LLP+SAD DL SVC+W D +K H+ W  +S L
Sbjct: 24  CWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPL 83

Query: 81  HFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALL 140
           H++DTPD  C Y+Y RDC D    + RCV GAI NYT QL+S +  S +   YNLTEAL+
Sbjct: 84  HYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSDTIVHYNLTEALM 143

Query: 141 FLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDG 200
           FLSHFIGDIHQPLHVGF  D GGNTI V WY RK  LHHVWDN IIE+A + +YN ++  
Sbjct: 144 FLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPL 203

Query: 201 LVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY 260
           +++A+Q N+T DW++ V  WE+C  N TACP+ YASE I  AC +AY+  + G+ L D+Y
Sbjct: 204 MIEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDY 263

Query: 261 FNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           F SRLPIV+ RLAQGG+RLAATLNRIF 
Sbjct: 264 FLSRLPIVEKRLAQGGIRLAATLNRIFS 291

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1

 Score =  308 bits (788), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 150/281 (53%), Positives = 192/281 (68%), Gaps = 10/281 (3%)

Query: 12  VSFFVLFPVIH---CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWAD 68
           VS  VL  +++   CWG+ GH AVC+IAQS   E    AVK+LLPESA+ +L +VC+W D
Sbjct: 10  VSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCSWPD 69

Query: 69  HVKF--HYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSA 126
            +K    + W+SALHF DTPD  C Y+Y+RDC      K  CV GAI NYT QL+S +  
Sbjct: 70  EIKKLPQWRWTSALHFADTPDYKCNYEYSRDCP-----KDWCVTGAIFNYTNQLMSTSEN 124

Query: 127 SSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNII 186
           S S   YNLTEAL+FLSH++GDIHQPLH GF  D GGN I VHWY ++  LH VWD+ II
Sbjct: 125 SQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDDMII 184

Query: 187 ETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWA 246
           E+A E +YNS++  ++  +Q  +   W++ V  WE+C  N TACP+ YASE I  AC +A
Sbjct: 185 ESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYASESIDLACKYA 244

Query: 247 YKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
           Y+  + G+ L D YF SRLP+V+ RLAQGG+RLA TLNRIF
Sbjct: 245 YRNATAGTTLGDYYFVSRLPVVEKRLAQGGIRLAGTLNRIF 285

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1

 Score =  302 bits (774), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 143/270 (52%), Positives = 182/270 (67%), Gaps = 5/270 (1%)

Query: 21  IHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSS 78
           +  W  +GH+  CRIAQ+ L    A  V+ LLP+    DL ++C W D ++  + Y W+S
Sbjct: 26  VRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYRWTS 85

Query: 79  ALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
            LH+IDTPD  C+Y+Y+RDC D+ G+K  CV GAI N+T+QL  Y   +S    YN+TEA
Sbjct: 86  HLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQHYGEGTSD-RRYNMTEA 144

Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNI 198
           LLFLSHF+GDIHQP+HVGFTSD GGNTID+ WY  K  LHHVWD  II TA +  Y+ N+
Sbjct: 145 LLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYDKNL 204

Query: 199 DGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLE 257
           D L + +++NIT   W D +  W  C+ +  ACP  YASE IK AC W YKGV  G  L 
Sbjct: 205 DLLQEDLEKNITNGLWHDDLSSWTECN-DLIACPHKYASESIKLACKWGYKGVKSGETLS 263

Query: 258 DEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
           +EYFN+RLPIV  R+ QGGVRLA  LNR+F
Sbjct: 264 EEYFNTRLPIVMKRIVQGGVRLAMILNRVF 293

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases during senescence. Endonuclease that recognizes and cleaves all types of mismatches with high efficiency, including heteroduplex double-stranded DNA. Maybe involved in programmed cell death (PCD) and senescence.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/285 (50%), Positives = 191/285 (67%), Gaps = 6/285 (2%)

Query: 9   LTCVSFFVLFPVIH---CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADND-LGSVC 64
           L  VS  VL  ++H   CWG DGH  VC++A+    +    AVK+LLPES D   L   C
Sbjct: 3   LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62

Query: 65  TWADHVK--FHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLS 122
           +W D +K    + W+S LH+++TP+  C Y+Y RDC D    K  CV GAI NYT QL+S
Sbjct: 63  SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122

Query: 123 YNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWD 182
            +  S +   YNLTEALLFLSH++GD+HQPLH GF  D GGNTI V+WY  K  LHHVWD
Sbjct: 123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182

Query: 183 NNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAA 242
           N II++A E +YNS++  ++ A+Q  +   W++ V  W++C  +  ACP++YASE I  A
Sbjct: 183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLA 242

Query: 243 CDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
           C +AY+  + G+ L DEYF SRLP+V+ RLAQGG+RLAATLNRIF
Sbjct: 243 CKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIF 287

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases. Endonuclease that recognizes and cleaves some mismatches with high efficiency, including heteroduplex double-stranded DNA; mostly efficient on T/G, A/G and G/G mismatches, less efficient for T/T and poorly efficient for C/C, A/A, T/C and A/C.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 131/293 (44%), Gaps = 43/293 (14%)

Query: 15  FVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF-- 72
             L  + + WGN GH  V  IAQS +  +     + +L + + + L +V TWAD  K+  
Sbjct: 12  LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71

Query: 73  HYHWSSALHFIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSS 129
              +S   HFID  DN    C   Y+RDC    G  G C   AI NYT  LL   + S +
Sbjct: 72  AGEFSKPYHFIDAQDNPPQSCGVDYDRDC----GSAG-CSISAIQNYTNILLESPNGSEA 126

Query: 130 HSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETA 189
                   AL F+ H IGDIHQPLH     + GGN IDV +      LHH+WD N+ E A
Sbjct: 127 ------LNALKFVVHIIGDIHQPLH-DENLEAGGNGIDVTYDGETTNLHHIWDTNMPEEA 179

Query: 190 EERFYNSNIDGLVDAIQQNITT--------DWADLVKKWETCS--------ANNTACPDV 233
              +  S      D + + I T         W D +   +  S        AN   C  V
Sbjct: 180 AGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTV 239

Query: 234 YASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRI 286
              +G+      AY   ++   L  EY++   P+ +  +A+ G RLAA L+ I
Sbjct: 240 L-DDGL------AYINSTD---LSGEYYDKSQPVFEELIAKAGYRLAAWLDLI 282

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 129/292 (44%), Gaps = 54/292 (18%)

Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHY--HWSSALH 81
           WG  GH  V  +AQ  +   AA   + +L  S+ + L S+ +WAD  +      WS++LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 82  FIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
           FID  DN    C   Y RDC    G  G C   AI NYT ++     + SS S  N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV-----SDSSLSSENHAEA 110

Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWD---------------- 182
           L FL HFIGD+ QPLH    +  GGN I+V +      LH  WD                
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 183 ----NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVKKWETCSANNTACPDVYAS 236
                 +++  E   Y +   G +  D I + ITT       +W +  AN   C  V   
Sbjct: 170 ESWAKTLVQNIESGNYTAQATGWIKGDNISEPITT-----ATRWAS-DANALVCT-VVMP 222

Query: 237 EGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
            G  A          +   L   Y++S +  ++L++A+GG RLA  +N I G
Sbjct: 223 HGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium sp (taxid: 5081)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 6

>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 129/292 (44%), Gaps = 54/292 (18%)

Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHY--HWSSALH 81
           WG  GH  V  +AQ  +   AA   + +L  S+ + L S+ +WAD  +      WS++LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 82  FIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
           FID  DN    C   Y RDC    G  G C   AI NYT ++     + SS S  N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV-----SDSSLSSENHAEA 110

Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWD---------------- 182
           L FL HFIGD+ QPLH    +  GGN I+V +      LH  WD                
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 183 ----NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVKKWETCSANNTACPDVYAS 236
                 +++  E   Y +   G +  D I + ITT       +W +  AN   C  V   
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITT-----ATRWAS-DANALVCT-VVMP 222

Query: 237 EGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
            G  A          +   L   Y++S +  ++L++A+GG RLA  +N I G
Sbjct: 223 HGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium citrinum (taxid: 5077)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
255572090	291	Nuclease S1 precursor, putative [Ricinus	0.954	0.945	0.765	1e-127
225424003	285	PREDICTED: nuclease S1 isoform 1 [Vitis	0.965	0.975	0.740	1e-124
225424005	293	PREDICTED: nuclease S1 isoform 2 [Vitis	0.961	0.945	0.739	1e-124
224111668	290	predicted protein [Populus trichocarpa]	0.934	0.927	0.783	1e-124
449434608	288	PREDICTED: endonuclease 2-like [Cucumis	0.979	0.979	0.720	1e-121
15221343	290	endonuclease 2 [Arabidopsis thaliana] gi	0.989	0.982	0.707	1e-119
297838585	290	hypothetical protein ARALYDRAFT_475947 [	0.968	0.962	0.706	1e-119
21554516	290	putative bifunctional nuclease [Arabidop	0.989	0.982	0.703	1e-119
356575560	284	PREDICTED: nuclease S1-like [Glycine max	0.965	0.978	0.698	1e-118
4099833	280	bifunctional nuclease [Zinnia violacea]	0.927	0.953	0.749	1e-118

>gi|255572090|ref|XP_002526985.1| Nuclease S1 precursor, putative [Ricinus communis] gi|223533620|gb|EEF35357.1| Nuclease S1 precursor, putative [Ricinus communis]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/282 (76%), Positives = 241/282 (85%), Gaps = 7/282 (2%)

Query: 1   MGLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDL 60
           MG+     LT  S   LFPVIHCWG DGH   C+IAQSRL +AAADAVK+LLPE A+NDL
Sbjct: 3   MGITINIFLTIFSLGFLFPVIHCWGTDGHFITCKIAQSRLSDAAADAVKELLPEYANNDL 62

Query: 61  GSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQL 120
           GS+C+WADHVKF YHWSSALH+IDTPD+LC YQY+RDC DE+G KGRCVAGAINNYT+QL
Sbjct: 63  GSICSWADHVKFRYHWSSALHYIDTPDSLCNYQYHRDCMDENGEKGRCVAGAINNYTSQL 122

Query: 121 LSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 180
           L+YNSASS  +EYNLTEALLFLSHF+GDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV
Sbjct: 123 LTYNSASS-QAEYNLTEALLFLSHFVGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 181

Query: 181 WDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIK 240
           WD NIIETAEERFYNSN+D ++DAIQQNITT+W +LV +WETCS N T CPD+YASEGIK
Sbjct: 182 WDANIIETAEERFYNSNVDDMIDAIQQNITTEWVNLVPRWETCSGNKTTCPDIYASEGIK 241

Query: 241 AACDWAYKGVSEGS------VLEDEYFNSRLPIVKLRLAQGG 276
           AACDWAYKG +EGS      +L D+YF SR PIV LRLAQ G
Sbjct: 242 AACDWAYKGANEGSKQLSKKLLADDYFLSRKPIVTLRLAQAG 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424003|ref|XP_002282829.1| PREDICTED: nuclease S1 isoform 1 [Vitis vinifera] gi|297737807|emb|CBI27008.3| unnamed protein product [Vitis vinifera]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/281 (74%), Positives = 239/281 (85%), Gaps = 3/281 (1%)

Query: 8   ILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWA 67
           IL  ++   L  V H WG DGH  +CRIAQSRL + AADAVK+LLP SAD+DL S+C+WA
Sbjct: 8   ILAFMALMSLCSVSHGWGTDGHFTICRIAQSRLSDVAADAVKELLPASADDDLASLCSWA 67

Query: 68  DHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSAS 127
           D VKF YHWSS LHF++TPD+LCTYQY RDCKDEDGVKGRCVAGAINNYT+QLL+Y S  
Sbjct: 68  DRVKFRYHWSSPLHFLNTPDDLCTYQYTRDCKDEDGVKGRCVAGAINNYTSQLLTYGS-- 125

Query: 128 SSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIE 187
            S ++YNLTEALLFLSH +GD+HQPLHVGFT+D+GGNTIDV WY RK VLHHVWD NIIE
Sbjct: 126 -SQADYNLTEALLFLSHLMGDVHQPLHVGFTTDKGGNTIDVKWYNRKTVLHHVWDTNIIE 184

Query: 188 TAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAY 247
           TAEE+FY+SN+D ++DAI++NITT+WAD V KWE C  N TACPD+YASEGIKAACDW+Y
Sbjct: 185 TAEEQFYDSNVDDMIDAIEKNITTEWADQVPKWEICGGNKTACPDIYASEGIKAACDWSY 244

Query: 248 KGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           KGV E SVLED+YF SRLPI+  RLAQGGVRLAATLNRIFG
Sbjct: 245 KGVREDSVLEDDYFLSRLPIITFRLAQGGVRLAATLNRIFG 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424005|ref|XP_002282886.1| PREDICTED: nuclease S1 isoform 2 [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/280 (73%), Positives = 238/280 (85%), Gaps = 3/280 (1%)

Query: 8   ILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWA 67
           IL  ++   L  V H WG DGH  +CRIAQSRL + AADAVK+LLP SAD+DL S+C+WA
Sbjct: 8   ILAFMALMSLCSVSHGWGTDGHFTICRIAQSRLSDVAADAVKELLPASADDDLASLCSWA 67

Query: 68  DHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSAS 127
           D VKF YHWSS LHF++TPD+LCTYQY RDCKDEDGVKGRCVAGAINNYT+QLL+Y S  
Sbjct: 68  DRVKFRYHWSSPLHFLNTPDDLCTYQYTRDCKDEDGVKGRCVAGAINNYTSQLLTYGS-- 125

Query: 128 SSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIE 187
            S ++YNLTEALLFLSH +GD+HQPLHVGFT+D+GGNTIDV WY RK VLHHVWD NIIE
Sbjct: 126 -SQADYNLTEALLFLSHLMGDVHQPLHVGFTTDKGGNTIDVKWYNRKTVLHHVWDTNIIE 184

Query: 188 TAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAY 247
           TAEE+FY+SN+D ++DAI++NITT+WAD V KWE C  N TACPD+YASEGIKAACDW+Y
Sbjct: 185 TAEEQFYDSNVDDMIDAIEKNITTEWADQVPKWEICGGNKTACPDIYASEGIKAACDWSY 244

Query: 248 KGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
           KGV E SVLED+YF SRLPI+  RLAQGGVRLAATLNRIF
Sbjct: 245 KGVREDSVLEDDYFLSRLPIITFRLAQGGVRLAATLNRIF 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111668|ref|XP_002315936.1| predicted protein [Populus trichocarpa] gi|222864976|gb|EEF02107.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/273 (78%), Positives = 238/273 (87%), Gaps = 4/273 (1%)

Query: 18  FPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWS 77
           FPVI+ WG DGH+ VCRIAQSRL EAAADAVKQLLPE A +DLGSVC+WAD V+F YHWS
Sbjct: 18  FPVINGWGIDGHLTVCRIAQSRLSEAAADAVKQLLPEYAGSDLGSVCSWADEVRFRYHWS 77

Query: 78  SALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHS---EYN 134
           + LHFI+TPD +C Y+Y RDC+D+ G KGRCVAGAINNYTTQLL+YNS SS        N
Sbjct: 78  APLHFINTPD-VCNYKYTRDCEDDTGEKGRCVAGAINNYTTQLLTYNSGSSQADIDLSDN 136

Query: 135 LTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFY 194
           LTEALLFLSHF+GDIHQPLHVGF SD+GGNTIDVHWY RKQVLHH+WD +IIETAEER Y
Sbjct: 137 LTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDVHWYRRKQVLHHIWDASIIETAEERLY 196

Query: 195 NSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGS 254
           NSN+D LVDA+Q+NIT DWADL+  WETCS N TACPD+YASEGIKAACDWAYKG +EG+
Sbjct: 197 NSNVDDLVDAVQKNITNDWADLIPGWETCSLNKTACPDIYASEGIKAACDWAYKGAAEGT 256

Query: 255 VLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
           VLED+YF SRLPIVKLRLAQGGVRLAATLNRIF
Sbjct: 257 VLEDDYFLSRLPIVKLRLAQGGVRLAATLNRIF 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434608|ref|XP_004135088.1| PREDICTED: endonuclease 2-like [Cucumis sativus] gi|449519637|ref|XP_004166841.1| PREDICTED: endonuclease 2-like [Cucumis sativus]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/283 (72%), Positives = 237/283 (83%), Gaps = 1/283 (0%)

Query: 6   YQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCT 65
           + I+  +S   +FPV   WG DGH  VC+IAQSRL +AAADAV++LLPESA  DL SVC 
Sbjct: 6   FLIVAFLSLVFIFPVSFGWGIDGHFTVCKIAQSRLSKAAADAVQELLPESAQGDLASVCI 65

Query: 66  WADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNS 125
           WAD VKF Y WS  LHFIDTPD+LCTYQY+RDCKDE G KGRCVAGAINNYT+QLL+YN 
Sbjct: 66  WADRVKFRYRWSPPLHFIDTPDSLCTYQYDRDCKDEAGEKGRCVAGAINNYTSQLLTYN- 124

Query: 126 ASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNI 185
           A  S+SEYNLTEALLFLSHF+GDIHQPLHVGFT DRGGNTIDVHWYTRKQ LHH+WD+NI
Sbjct: 125 AQPSNSEYNLTEALLFLSHFMGDIHQPLHVGFTGDRGGNTIDVHWYTRKQNLHHIWDSNI 184

Query: 186 IETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDW 245
           IETAE +FY+ ++DGLVDAIQ NI  +WAD V++WE C ++   C ++YASE I+AACDW
Sbjct: 185 IETAEGKFYDFSVDGLVDAIQTNIKNEWADQVEEWEKCGSDEVPCTEIYASESIQAACDW 244

Query: 246 AYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           AYKGVSEGS L ++YF SR+P++KLRLAQGGVRLAA LNRIFG
Sbjct: 245 AYKGVSEGSTLAEKYFASRVPVLKLRLAQGGVRLAAALNRIFG 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221343|ref|NP_176996.1| endonuclease 2 [Arabidopsis thaliana] gi|75169708|sp|Q9C9G4.1|ENDO2_ARATH RecName: Full=Endonuclease 2; Short=AtENDO2; AltName: Full=Deoxyribonuclease ENDO2; AltName: Full=Single-stranded-nucleate endonuclease ENDO2; Flags: Precursor gi|12325316|gb|AAG52597.1|AC016447_6 putative bifunctional nuclease; 47147-45601 [Arabidopsis thaliana] gi|332196656|gb|AEE34777.1| endonuclease 2 [Arabidopsis thaliana]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/287 (70%), Positives = 237/287 (82%), Gaps = 2/287 (0%)

Query: 2   GLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLG 61
           GL    ++  V      P IH WG +GH  +C+IAQ+RL E AA AVK+LLPESA+ DL 
Sbjct: 6   GLHVVMMIITVWLLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLS 65

Query: 62  SVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLL 121
           S+C WAD VKF YHWSS LH+I+TPD  C+YQYNRDCKDE G KGRCVAGAI NYTTQLL
Sbjct: 66  SLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLL 124

Query: 122 SYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVW 181
           SY +A+SS S+YNLTEALLF+SHF+GDIHQPLHV + SD+GGNTI+VHWYTRK  LHH+W
Sbjct: 125 SYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIW 184

Query: 182 DNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKA 241
           D+NIIETAE   YNS ++G+VDA+++NITT+WAD VK+WETC+   TACPD+YASEGI+A
Sbjct: 185 DSNIIETAEADLYNSALEGMVDALKKNITTEWADQVKRWETCT-KKTACPDIYASEGIQA 243

Query: 242 ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           ACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGGVRLAATLNRIFG
Sbjct: 244 ACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIFG 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838585|ref|XP_002887174.1| hypothetical protein ARALYDRAFT_475947 [Arabidopsis lyrata subsp. lyrata] gi|297333015|gb|EFH63433.1| hypothetical protein ARALYDRAFT_475947 [Arabidopsis lyrata subsp. lyrata]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/283 (70%), Positives = 242/283 (85%), Gaps = 4/283 (1%)

Query: 8   ILTCVSFFVLF--PVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCT 65
           ++  ++ ++L+  P IH WG +GH  +C+IAQ+RL E AA AVK+LLPESA+ DL S+C 
Sbjct: 10  VMMIITVWLLYAAPSIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCL 69

Query: 66  WADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNS 125
           WAD VKF YHWSS LH+I+TPD  C+YQYNRDCKDE G KGRCVAGAI NYT+QLLSYN+
Sbjct: 70  WADRVKFRYHWSSPLHYINTPD-ACSYQYNRDCKDEAGEKGRCVAGAIYNYTSQLLSYNT 128

Query: 126 ASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNI 185
           A+SS S+YNLTEALLF+SHF+GDIHQPLHVG+ SD+GGNTI+VHWY+RK  LHH+WD+NI
Sbjct: 129 AASSQSQYNLTEALLFVSHFMGDIHQPLHVGYASDKGGNTIEVHWYSRKANLHHIWDSNI 188

Query: 186 IETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDW 245
           IETAE   YNS ++G+VDA+++NITT+WAD VK+WE+C+   TACPD+YASEGI+AACDW
Sbjct: 189 IETAEADLYNSELEGMVDALKKNITTEWADQVKRWESCT-KKTACPDIYASEGIQAACDW 247

Query: 246 AYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           AYKGV+EG  LEDEYF SRLPIV  RLAQGGVRLAATLNRIFG
Sbjct: 248 AYKGVTEGDTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIFG 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554516|gb|AAM63596.1| putative bifunctional nuclease [Arabidopsis thaliana]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/287 (70%), Positives = 237/287 (82%), Gaps = 2/287 (0%)

Query: 2   GLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLG 61
           GL    ++  V      P IH WG +GH  +C+IAQ+RL E AA AVK+LLPESA+ DL 
Sbjct: 6   GLHVVMMIITVWLLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLS 65

Query: 62  SVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLL 121
           S+C WAD VKF YHWSS LH+I+TPD  C+YQYNRDCKDE G KGRCVAGAI NYTTQLL
Sbjct: 66  SLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLL 124

Query: 122 SYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVW 181
           SY +A+SS S+YNLTEALLF+SHF+GDIHQPLHV + SD+GGNTI+VHWYTRK  LHH+W
Sbjct: 125 SYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIW 184

Query: 182 DNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKA 241
           D+NIIETAE   YNS ++G+VDA+++NITT+WAD VK+W+TC+   TACPD+YASEGI+A
Sbjct: 185 DSNIIETAEADLYNSALEGMVDALKKNITTEWADQVKRWDTCT-KKTACPDIYASEGIQA 243

Query: 242 ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           ACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGGVRLAATLNRIFG
Sbjct: 244 ACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIFG 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575560|ref|XP_003555908.1| PREDICTED: nuclease S1-like [Glycine max]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/282 (69%), Positives = 231/282 (81%), Gaps = 4/282 (1%)

Query: 7   QILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTW 66
           Q++  VS  ++ P    WG DGH  +CRIAQSRL ++AA+AVK LLPE A NDLG+VC+W
Sbjct: 7   QLVVIVSLMIVLPNTQGWGEDGHAIICRIAQSRLSDSAANAVKNLLPEYAQNDLGNVCSW 66

Query: 67  ADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSA 126
           AD V+F+ HWS+ LHF DTPDNLC YQY+RDCKD+DGVKGRCV GAI NYT QLL Y   
Sbjct: 67  ADRVRFYLHWSAPLHFADTPDNLCNYQYDRDCKDQDGVKGRCVVGAIKNYTDQLLDY--- 123

Query: 127 SSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNII 186
              +++ NLT+AL+FLSHF+GD+HQPLHVGFTSDRG N+I+VHWYTRKQ LHHVWD NII
Sbjct: 124 -GKNTQNNLTQALMFLSHFMGDVHQPLHVGFTSDRGANSINVHWYTRKQNLHHVWDVNII 182

Query: 187 ETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWA 246
           ETAEERFY+SNID   +AIQ+NIT  W+D V  WETC +  TACPD+YASEG++AAC WA
Sbjct: 183 ETAEERFYDSNIDEFTNAIQENITKTWSDQVLGWETCDSKETACPDIYASEGVQAACQWA 242

Query: 247 YKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           YKG  EGSVLED+YF SRLP+V LRLAQGGVRLAATLNRIFG
Sbjct: 243 YKGAPEGSVLEDDYFLSRLPVVSLRLAQGGVRLAATLNRIFG 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4099833|gb|AAD00694.1| bifunctional nuclease [Zinnia violacea]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/271 (74%), Positives = 226/271 (83%), Gaps = 4/271 (1%)

Query: 19  PV-IHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWS 77
           PV +  WG DGH   C+IAQ RL + A DAV  LLPE A+ DL S+C+WADHVKF YHWS
Sbjct: 13  PVTVRGWGVDGHFITCKIAQGRLSQTAVDAVNSLLPEYAEGDLASLCSWADHVKFRYHWS 72

Query: 78  SALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTE 137
           SALH+IDTPDNLCTYQY RDCKDEDGV GRCVAGAI NYTTQLL Y   +S   +YNLTE
Sbjct: 73  SALHYIDTPDNLCTYQYRRDCKDEDGVMGRCVAGAIMNYTTQLLDYGKQTS---QYNLTE 129

Query: 138 ALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSN 197
           ALLFLSHF+GDIHQPLHVGFTSDRGGNTIDVHW+TRK VLHHVWD++IIETAEERFY SN
Sbjct: 130 ALLFLSHFMGDIHQPLHVGFTSDRGGNTIDVHWFTRKAVLHHVWDDSIIETAEERFYGSN 189

Query: 198 IDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLE 257
           ++ L+DAI+ NIT  W D VK WE CSAN   CP++YA+EGIKAAC+WAYKGV+ GSVLE
Sbjct: 190 VENLIDAIETNITNVWGDQVKAWENCSANQKTCPNIYATEGIKAACNWAYKGVTNGSVLE 249

Query: 258 DEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           D+YF SRLPIV  RLAQGGVRLAA LNRIFG
Sbjct: 250 DDYFLSRLPIVNWRLAQGGVRLAANLNRIFG 280

Source: Zinnia violacea

Species: Zinnia violacea

Genus: Zinnia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2199297	290	ENDO2 "AT1G68290" [Arabidopsis	0.989	0.982	0.686	3.8e-110
TAIR|locus:504955531	299	ENDO4 "endonuclease 4" [Arabid	0.920	0.886	0.576	6.9e-86
TAIR|locus:2119687	294	ENDO3 "endonuclease 3" [Arabid	0.940	0.921	0.523	1.6e-77
TAIR|locus:2202114	305	BFN1 "bifunctional nuclease i"	0.968	0.914	0.5	2.1e-77
TAIR|locus:2119612	296	ENDO5 "endonuclease 5" [Arabid	0.968	0.942	0.501	7.1e-77
UNIPROTKB|G5EHU9	306	MGCH7_ch7g611 "Nuclease PA3" [	0.854	0.803	0.297	5.2e-26
GENEDB_PFALCIPARUM|PF14_0119	320	PF14_0119 "hypothetical protei	0.236	0.212	0.328	1.4e-05
UNIPROTKB|Q8ILX4	320	PF14_0119 "p1/s1 nuclease, put	0.236	0.212	0.328	1.4e-05
GENEDB_PFALCIPARUM|PF14_0117	327	PF14_0117 "hypothetical protei	0.753	0.663	0.228	6.1e-05
UNIPROTKB|Q8ILX6	327	PF14_0117 "Putative uncharacte	0.753	0.663	0.228	6.1e-05

TAIR|locus:2199297 ENDO2 "AT1G68290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 197/287 (68%), Positives = 229/287 (79%)

Query:     2 GLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLG 61
             GL    ++  V      P IH WG +GH  +C+IAQ+RL E AA AVK+LLPESA+ DL 
Sbjct:     6 GLHVVMMIITVWLLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLS 65

Query:    62 SVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLL 121
             S+C WAD VKF YHWSS LH+I+TPD  C+YQYNRDCKDE G KGRCVAGAI NYTTQLL
Sbjct:    66 SLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLL 124

Query:   122 XXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVW 181
                       +YNLTEALLF+SHF+GDIHQPLHV + SD+GGNTI+VHWYTRK  LHH+W
Sbjct:   125 SYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIW 184

Query:   182 DNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKA 241
             D+NIIETAE   YNS ++G+VDA+++NITT+WAD VK+WETC+   TACPD+YASEGI+A
Sbjct:   185 DSNIIETAEADLYNSALEGMVDALKKNITTEWADQVKRWETCT-KKTACPDIYASEGIQA 243

Query:   242 ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
             ACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGGVRLAATLNRIFG
Sbjct:   244 ACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIFG 290

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0004519 "endonuclease activity" evidence=ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:504955531 ENDO4 "endonuclease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 154/267 (57%), Positives = 190/267 (71%)

Query:    23 CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHW--SSAL 80
             CWG +GH  VC+IA+S   E    AVK+LLP+SAD DL SVC+W D +K H+ W  +S L
Sbjct:    24 CWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPL 83

Query:    81 HFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALL 140
             H++DTPD  C Y+Y RDC D    + RCV GAI NYT QL+           YNLTEAL+
Sbjct:    84 HYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSDTIVHYNLTEALM 143

Query:   141 FLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDG 200
             FLSHFIGDIHQPLHVGF  D GGNTI V WY RK  LHHVWDN IIE+A + +YN ++  
Sbjct:   144 FLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPL 203

Query:   201 LVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY 260
             +++A+Q N+T DW++ V  WE+C  N TACP+ YASE I  AC +AY+  + G+ L D+Y
Sbjct:   204 MIEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDY 263

Query:   261 FNSRLPIVKLRLAQGGVRLAATLNRIF 287
             F SRLPIV+ RLAQGG+RLAATLNRIF
Sbjct:   264 FLSRLPIVEKRLAQGGIRLAATLNRIF 290

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:2119687 ENDO3 "endonuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 147/281 (52%), Positives = 188/281 (66%)

Query:    12 VSFFVLFPVIH---CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWAD 68
             VS  VL  +++   CWG+ GH AVC+IAQS   E    AVK+LLPESA+ +L +VC+W D
Sbjct:    10 VSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCSWPD 69

Query:    69 HVKF--HYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLXXXXX 126
              +K    + W+SALHF DTPD  C Y+Y+RDC      K  CV GAI NYT QL+     
Sbjct:    70 EIKKLPQWRWTSALHFADTPDYKCNYEYSRDCP-----KDWCVTGAIFNYTNQLMSTSEN 124

Query:   127 XXXXXEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNII 186
                   YNLTEAL+FLSH++GDIHQPLH GF  D GGN I VHWY ++  LH VWD+ II
Sbjct:   125 SQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDDMII 184

Query:   187 ETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWA 246
             E+A E +YNS++  ++  +Q  +   W++ V  WE+C  N TACP+ YASE I  AC +A
Sbjct:   185 ESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYASESIDLACKYA 244

Query:   247 YKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
             Y+  + G+ L D YF SRLP+V+ RLAQGG+RLA TLNRIF
Sbjct:   245 YRNATAGTTLGDYYFVSRLPVVEKRLAQGGIRLAGTLNRIF 285

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2202114 BFN1 "bifunctional nuclease i" [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 143/286 (50%), Positives = 186/286 (65%)

Query:     7 QILTCVSFFVLFPV--IHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVC 64
             +++  +   +L  V  +  W  +GH+  CRIAQ+ L    A  V+ LLP+    DL ++C
Sbjct:    10 RLILVLGILILCSVSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALC 69

Query:    65 TWADHVK--FHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLX 122
              W D ++  + Y W+S LH+IDTPD  C+Y+Y+RDC D+ G+K  CV GAI N+T+QL  
Sbjct:    70 VWPDQIRHWYKYRWTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQL-Q 128

Query:   123 XXXXXXXXXEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWD 182
                       YN+TEALLFLSHF+GDIHQP+HVGFTSD GGNTID+ WY  K  LHHVWD
Sbjct:   129 HYGEGTSDRRYNMTEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWD 188

Query:   183 NNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKA 241
               II TA +  Y+ N+D L + +++NIT   W D +  W  C+ +  ACP  YASE IK 
Sbjct:   189 REIILTALKENYDKNLDLLQEDLEKNITNGLWHDDLSSWTECN-DLIACPHKYASESIKL 247

Query:   242 ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
             AC W YKGV  G  L +EYFN+RLPIV  R+ QGGVRLA  LNR+F
Sbjct:   248 ACKWGYKGVKSGETLSEEYFNTRLPIVMKRIVQGGVRLAMILNRVF 293

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0080187 "floral organ senescence" evidence=IEP

TAIR|locus:2119612 ENDO5 "endonuclease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 143/285 (50%), Positives = 187/285 (65%)

Query:     9 LTCVSFFVLFPVIH---CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADND-LGSVC 64
             L  VS  VL  ++H   CWG DGH  VC++A+    +    AVK+LLPES D   L   C
Sbjct:     3 LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62

Query:    65 TWADHVK--FHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLX 122
             +W D +K    + W+S LH+++TP+  C Y+Y RDC D    K  CV GAI NYT QL+ 
Sbjct:    63 SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122

Query:   123 XXXXXXXXXEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWD 182
                       YNLTEALLFLSH++GD+HQPLH GF  D GGNTI V+WY  K  LHHVWD
Sbjct:   123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182

Query:   183 NNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAA 242
             N II++A E +YNS++  ++ A+Q  +   W++ V  W++C  +  ACP++YASE I  A
Sbjct:   183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLA 242

Query:   243 CDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
             C +AY+  + G+ L DEYF SRLP+V+ RLAQGG+RLAATLNRIF
Sbjct:   243 CKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIF 287

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|G5EHU9 MGCH7_ch7g611 "Nuclease PA3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 85/286 (29%), Positives = 136/286 (47%)

Query:    24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHY--HWSSALH 81
             WG+ GH+ V  +A   +       +++LL    D  L  V TWAD +++    H++   H
Sbjct:    22 WGSLGHITVAYLASRFVAPQTETYLQRLLRNDTDAYLAGVATWADSIRYTKWGHFTGVFH 81

Query:    82 FIDTPDN---LCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEA 138
             FID  D+    C+   +RDCKD+      CV  A+ NYT++++          E+   +A
Sbjct:    82 FIDAKDDPPRSCSVDMDRDCKDQG-----CVVTALQNYTSRMMDLDRLR----EWERAQA 132

Query:   139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNI 198
               F+ HF+GD+HQPLH    + RGGN I V W+ R+  LH VWD+ I E           
Sbjct:   133 AKFVVHFVGDMHQPLHDEDVA-RGGNGIHVLWHGREYNLHSVWDSAIAEQLRGGVRRGR- 190

Query:   199 DGLVDAIQQNITTDWADLVKKWETCS---ANNTACPD-VYASEGIKAACDWAYKGVS--- 251
              G+ DA +      WAD +++        A + A  D V  ++ +  A  WA +G +   
Sbjct:   191 -GMYDAAKV-----WADELEREVKAGRFRAESEAWLDGVDLADPVGTALIWARQGNAFVC 244

Query:   252 -----------EGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRI 286
                        +G  L  +Y+    P+++ ++A+ G RLA  L+ I
Sbjct:   245 SHVLPEGPEAIKGQELSGKYYEEAAPVIESQVARAGFRLARWLDLI 290

GO:0005575 "cellular_component" evidence=ND

GENEDB_PFALCIPARUM|PF14_0119 PF14_0119 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 98 (39.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query:   133 YNLTEALLFLSHFIGDIHQPLH-VGF------TSDRGGNTIDVHWYTRKQVLHHVWDNNI 185
             Y+    L F  H   D+HQPLH + F        DRGG  I V++      LH++ DN I
Sbjct:   146 YSYNFYLRFFIHIFSDLHQPLHAINFFNSNYPNGDRGGTDISVNYKGSINKLHYLCDN-I 204

Query:   186 IETAEERFYNSNIDGL 201
              +T ++++ N N+  +
Sbjct:   205 FKTRKKQWPNINMTNI 220

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ILX4 PF14_0119 "p1/s1 nuclease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 98 (39.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query:   133 YNLTEALLFLSHFIGDIHQPLH-VGF------TSDRGGNTIDVHWYTRKQVLHHVWDNNI 185
             Y+    L F  H   D+HQPLH + F        DRGG  I V++      LH++ DN I
Sbjct:   146 YSYNFYLRFFIHIFSDLHQPLHAINFFNSNYPNGDRGGTDISVNYKGSINKLHYLCDN-I 204

Query:   186 IETAEERFYNSNIDGL 201
              +T ++++ N N+  +
Sbjct:   205 FKTRKKQWPNINMTNI 220

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|PF14_0117 PF14_0117 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 121 (47.7 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 58/254 (22%), Positives = 105/254 (41%)

Query:    24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPE-SADND-----LGSVCTWADHVK-FHYHW 76
             W ++GH+ V  IA + L +     +  +      DND     LGSV  W DH+K F+Y++
Sbjct:    23 WCDEGHMLVSAIAYNFLNDDEKTVLDHIFKNYKEDNDFNDPVLGSV--WPDHIKYFNYNY 80

Query:    77 SSAL------------HFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLXXX 124
              + +            H+++ P N    + N   K+        +   + +    L    
Sbjct:    81 PNKMRRIDGLELMNKWHYVNIPYNPTNIKLNMFQKEYYKRTDNAIT-ILKSIFKSLKNVK 139

Query:   125 XXXXXXXEYNLTEALLFLSHFIGDIHQPLH-VGFTS------DRGGNTIDVHWYTRKQVL 177
                     ++    + +  H  GDIHQPLH + F +      DRGG  I V +  + + L
Sbjct:   140 KKENHGTFFSYNFLIRYFIHIFGDIHQPLHSLSFYNKNFPEGDRGGTDIFVMYNNKVENL 199

Query:   178 HHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD----WADLVKKWETCSANNTACPDV 233
             H++ D+ +     +++ + N D +    Q+ +       +AD +K+ E    NN +  D 
Sbjct:   200 HYLCDS-VFRARNQKWPHLNSDMINKEAQKLMKLYPKEYFADRLKQSEF---NNYSYIDF 255

Query:   234 YASEGIKAACDWAY 247
                E    A ++ Y
Sbjct:   256 IIIETFDLAVEYVY 269

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ILX6 PF14_0117 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 121 (47.7 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 58/254 (22%), Positives = 105/254 (41%)

Query:    24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPE-SADND-----LGSVCTWADHVK-FHYHW 76
             W ++GH+ V  IA + L +     +  +      DND     LGSV  W DH+K F+Y++
Sbjct:    23 WCDEGHMLVSAIAYNFLNDDEKTVLDHIFKNYKEDNDFNDPVLGSV--WPDHIKYFNYNY 80

Query:    77 SSAL------------HFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLXXX 124
              + +            H+++ P N    + N   K+        +   + +    L    
Sbjct:    81 PNKMRRIDGLELMNKWHYVNIPYNPTNIKLNMFQKEYYKRTDNAIT-ILKSIFKSLKNVK 139

Query:   125 XXXXXXXEYNLTEALLFLSHFIGDIHQPLH-VGFTS------DRGGNTIDVHWYTRKQVL 177
                     ++    + +  H  GDIHQPLH + F +      DRGG  I V +  + + L
Sbjct:   140 KKENHGTFFSYNFLIRYFIHIFGDIHQPLHSLSFYNKNFPEGDRGGTDIFVMYNNKVENL 199

Query:   178 HHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD----WADLVKKWETCSANNTACPDV 233
             H++ D+ +     +++ + N D +    Q+ +       +AD +K+ E    NN +  D 
Sbjct:   200 HYLCDS-VFRARNQKWPHLNSDMINKEAQKLMKLYPKEYFADRLKQSEF---NNYSYIDF 255

Query:   234 YASEGIKAACDWAY 247
                E    A ++ Y
Sbjct:   256 IIIETFDLAVEYVY 269


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.443    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      288       278   0.00081  115 3  11 22  0.46    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  249 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.54u 0.11s 21.65t   Elapsed:  00:00:01
  Total cpu time:  21.55u 0.11s 21.66t   Elapsed:  00:00:01
  Start:  Sat May 11 08:13:18 2013   End:  Sat May 11 08:13:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9G4	ENDO2_ARATH	3, ., 1, ., 3, 0, ., 1	0.7073	0.9895	0.9827	yes	no
P24021	NUS1_ASPOR	3, ., 1, ., 3, 0, ., 1	0.3242	0.8680	0.8710	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.30.1	LOW CONFIDENCE prediction!
3rd Layer	3.1.30	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.177.1 hypothetical protein (276 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam02265	251	pfam02265, S1-P1_nuclease, S1/P1 Nuclease	1e-116
cd11010	249	cd11010, S1-P1_nuclease, S1/P1 nucleases and relat	7e-85
cd10981	238	cd10981, ZnPC_S1P1, Zinc dependent phospholipase C	2e-06

>gnl|CDD|216953 pfam02265, S1-P1_nuclease, S1/P1 Nuclease

 Score =  333 bits (857), Expect = e-116
 Identities = 122/268 (45%), Positives = 149/268 (55%), Gaps = 20/268 (7%)

Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALH 81
           WG +GH  V  IA+  L   A  AV++LLP   D DL  V TWAD ++    Y W+S  H
Sbjct: 1   WGKEGHRTVAEIAERHLSPKARKAVQRLLPGL-DGDLAQVATWADDIRSDGKYRWTSPWH 59

Query: 82  FIDTPDNLCTYQYNRDCKD-EDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALL 140
           +IDTPDN       RDC D ED  K  CV  AINNYT+QL    +     S     EAL 
Sbjct: 60  YIDTPDNPP----PRDCHDAEDCPKEGCVVSAINNYTSQLKDTTA-----SSDQRAEALK 110

Query: 141 FLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDG 200
           FL HF+GDIHQPLH G   DRGGN I V W+ RK  LH VWD+ IIETA   +Y S++  
Sbjct: 111 FLVHFVGDIHQPLHAGRAGDRGGNDIKVRWFGRKTNLHSVWDSGIIETALGDYYRSSLSE 170

Query: 201 LVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY 260
             DA++  IT                    P  +A E    AC   Y GV+ G+ L DEY
Sbjct: 171 WADALEATITFGEYKDAW-------EPGTTPLDWAEESNALACKVVYPGVTNGATLSDEY 223

Query: 261 FNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           ++S LP+V+L+LA+ G RLAA LNRIF 
Sbjct: 224 YDSALPVVELQLAKAGYRLAALLNRIFD 251

This family contains both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. Length = 251

>gnl|CDD|211382 cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes

 Score =  254 bits (650), Expect = 7e-85
 Identities = 96/268 (35%), Positives = 130/268 (48%), Gaps = 23/268 (8%)

Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALH 81
           WG +GH  V  IA+  L   A  AV +LL   +   L    TWAD ++    Y W++  H
Sbjct: 1   WGAEGHRIVAEIAEQYLTPKARKAVDRLLGGLSGESLAEAATWADDIRSDPAYKWTAPWH 60

Query: 82  FIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLF 141
           +++ PDN C +   RDC         CV  AI NYT +L        S S+    EAL F
Sbjct: 61  YVNIPDNPCKFYDERDCPPGG-----CVVSAIKNYTARL-----KDPSLSDAERAEALKF 110

Query: 142 LSHFIGDIHQPLHVGFTSDRGGNTIDVH-WYTRKQVLHHVWDNNIIETAEERFYNSNIDG 200
           L HF+GDIHQPLHVG   D GGN  DV  W+ RK  LH VWD+ +I+ A+  +       
Sbjct: 111 LIHFVGDIHQPLHVGSREDGGGNDGDVGGWFGRKTNLHSVWDSGLIDKAKGSYTELAAAL 170

Query: 201 LVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGS-VLEDE 259
           L   + + I T             A+    P  +A E  + AC+  Y  +   +  L   
Sbjct: 171 LAALLAEAIETGL---------EEADAEGDPADWAQESYELACEIYYPNLPGDTLELSYA 221

Query: 260 YFNSRLPIVKLRLAQGGVRLAATLNRIF 287
           Y+    P+V+ +LA+ G RLAA LN IF
Sbjct: 222 YYYKAKPVVEEQLAKAGYRLAAVLNEIF 249

This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded, it may also introduce single-stranded breaks in double-stranded DNA or RNA, or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates, and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis. Length = 249

>gnl|CDD|211380 cd10981, ZnPC_S1P1, Zinc dependent phospholipase C/S1-P1 nuclease

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 39/197 (19%), Positives = 64/197 (32%), Gaps = 16/197 (8%)

Query: 25  GNDGHVAVCRIAQSRL-REAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFI 83
           G   H  + R A   L  E A      L     +   G+V    D  ++     +  H +
Sbjct: 1   GFGTHHKIARDAVFTLPPELAEFWSDLLKRNIDELLEGAV--APDKRRYDDDGEAQNHVL 58

Query: 84  DTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLS 143
           D  D   +   ++  +D  G  G      I  +  Q L    A       ++  A   LS
Sbjct: 59  DVDDYGDSAL-DKYGEDTLGYWG-GAPWQIQEWY-QRLVD--AFRRKDWKDIAFAAGVLS 113

Query: 144 HFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVD 203
           H+IGD H PLH                 T +  +H  W+  I E   E +  ++  G   
Sbjct: 114 HYIGDAHVPLHTTQN--------YNGQLTGQDGIHRAWETRIPELYAELYALTDAFGDPF 165

Query: 204 AIQQNITTDWADLVKKW 220
             + +      + +   
Sbjct: 166 VGKADYIKWPKEYIWDA 182

This model describes both the bacterial and archeal zinc-dependent phospholipase C, a domain found in the alpha toxin of Clostridium perfringens, as well as S1/P1 nucleases, which predominantly act on single-stranded DNA and RNA. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
PF02265	252	S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR00315	100.0
smart00770	241	Zn_dep_PLPC Zinc dependent phospholipase C (alpha	96.82

>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3

Probab=100.00  E-value=4.7e-69  Score=481.70  Aligned_cols=246  Identities=39%  Similarity=0.738  Sum_probs=190.9

Q ss_pred             cChhhHHHHHHHHHhccCHHHHHHHHhhCCCCCCCccccccccccccCc---cCCCCCCcccccCCC--CCCCcccCCCc
Q 023045           24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF---HYHWSSALHFIDTPD--NLCTYQYNRDC   98 (288)
Q Consensus        24 Wg~~GH~~Va~iA~~~L~~~~~~~l~~lL~~~~~~~~~~~a~WaD~ir~---~~~~~~~wHyid~p~--~~~~~~~~~dc   98 (288)
                      ||..|||+||+||+++|+|+++++|+++|+..+..+|+++|+|||+||+   +++++++|||+|+|.  .+|++.+..+|
T Consensus         1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~   80 (252)
T PF02265_consen    1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC   80 (252)
T ss_dssp             --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence            9999999999999999999999999999996545899999999999998   579999999999998  45566555778


Q ss_pred             cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCc-cCCCCCCCCCceEEeeccccCCc
Q 023045           99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH-VGFTSDRGGNTIDVHWYTRKQVL  177 (288)
Q Consensus        99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH-~~~~~D~GGN~~~V~~~g~~~nL  177 (288)
                      +     +++|++++|.+++++|++.+.+.     .+++++||||+||||||||||| ++++||+|||+++|+++|+++||
T Consensus        81 ~-----~~~~~~~ai~~~~~~L~~~~~~~-----~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nL  150 (252)
T PF02265_consen   81 P-----NGGCVVSAIKNYTSRLKDTSTSK-----AERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNL  150 (252)
T ss_dssp             ------TT--HHHHHHHHHHHHT-TTS-H-----HHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEH
T ss_pred             C-----CCCcHHHHHHHHHHHHhccCCCc-----HHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcH
Confidence            4     69999999999999999987663     4799999999999999999999 67899999999999999999999


Q ss_pred             hhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCCCCCChHHHHHHHHHHHHHhccCCCCCCCCCC
Q 023045          178 HHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLE  257 (288)
Q Consensus       178 H~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~la~~~vY~~~~~~~~ls  257 (288)
                      |++||++|++......+..+..++++.|.+.++.   +..+.|.+      .+|.+|++||++++|+++|+.++.+.+|+
T Consensus       151 H~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~~---~~~~~~~~------~~~~~Wa~ES~~la~~~~y~~~~~~~~l~  221 (252)
T PF02265_consen  151 HSVWDSGLINYMIKNKYQSSWQEYADELDRKITK---ESFKSWQP------GDPEDWANESHELACNIVYPGIKNGTELS  221 (252)
T ss_dssp             HHHHHTHHHHHHHS--SHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHHHHHHHHTTSTT-SGGGS-T
T ss_pred             HHHHHHHHHHhhccccchhhHHHHHHHHHhhccc---hhhhhhhh------hhHHHHHHHHHHHHHHHHhccCCCCCccC
Confidence            9999999998765533333566788888766653   45566754      48999999999999999998888888999


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045          258 DEYFNSRLPIVKLRLAQGGVRLAATLNRIFG  288 (288)
Q Consensus       258 ~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~~  288 (288)
                      ++|++++++++++||++||+|||.+||+||+
T Consensus       222 ~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~  252 (252)
T PF02265_consen  222 DEYYTKARPVAEEQLAKAGYRLAAVLNEIFD  252 (252)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999995

1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.

>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin)

Probab=96.82  E-value=0.0028  Score=56.28  Aligned_cols=114  Identities=19%  Similarity=0.181  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHhccCHHHHHHHH---hhCCCCCCCccccccccccccCccCCCCCCcccccCCCCCCCcccCCCccccCC
Q 023045           27 DGHVAVCRIAQSRLREAAADAVK---QLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDG  103 (288)
Q Consensus        27 ~GH~~Va~iA~~~L~~~~~~~l~---~lL~~~~~~~~~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc~~~~~  103 (288)
                      .-|..|..=|.+.|..+.-..-.   ++|... ...+..-..|||.-...+.. ..+||.|...+ .+|-+.        
T Consensus        38 ~tH~~I~~qAi~iL~nd~~~~~~~~~~~l~~y-~~~l~~G~~~aD~~~~~~~~-~~~HFydp~~~-~~yL~~--------  106 (241)
T smart00770       38 NTHLFIVNQALEILKNDNNKNEYKLVEILKKN-YKELKLGSTYADYDNKYYDL-SQDHFYDPDTG-KNYLPG--------  106 (241)
T ss_pred             cHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHHHcCCcccccCcccccc-ccccccCCCCC-CCCCCC--------
Confidence            56999999999999654221111   344321 24677889999986654442 36799986543 232111        


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccC
Q 023045          104 VKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG  156 (288)
Q Consensus       104 ~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~  156 (288)
                        ..........+...-.+.-....   ...--+.|-.-.|+++|+-||+|+.
T Consensus       107 --~~~A~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~  154 (241)
T smart00770      107 --FSNAKDTGRKYFKLALNEWKKGN---YKKAFFYLGRACHYLGDLSTPYHAN  154 (241)
T ss_pred             --CCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCccccc
Confidence              11233333334333322111110   1123466888899999999999985

This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
3sng_A	277	X-ray Structure Of Fully Glycosylated Bifunctional		6e-80
4dj4_A	277	X-ray Structure Of Mutant N211d Of Bifunctional Nuc		2e-79
1ak0_A	270	P1 Nuclease In Complex With A Substrate Analog Leng		2e-17

>pdb|3SNG|A Chain A, X-ray Structure Of Fully Glycosylated Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  293 bits (751), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 144/268 (53%), Positives = 177/268 (66%), Gaps = 5/268 (1%)
Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALH 81
           W  +GHV  CRIAQ  L + AA AVK LLPE  + DL ++C W D V+  + Y W+S LH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 82  FIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLF 141
           FIDTPD  C + Y RDC D+ GVK  CVAGAI N+TTQL            YN+TEALLF
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLF 119
Query: 142 LSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGL 201
           LSHF+GDIHQP+HVGFTSD GGN+ID+ W+  K  LHHVWD  II TA + +Y  +I+ L
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179
Query: 202 VDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY 260
            + I+ N T   W+D +  W  C  N  +C + +A+E I  AC W YKGV  G  L D+Y
Sbjct: 180 EEDIEGNFTDGIWSDDLASWREC-GNVFSCVNKFATESINIACKWGYKGVEAGETLSDDY 238
Query: 261 FNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           FNSRLPIV  R+AQGG+RLA  LN +FG
Sbjct: 239 FNSRLPIVMKRVAQGGIRLAMLLNNVFG 266

>pdb|4DJ4|A Chain A, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/268 (53%), Positives = 177/268 (66%), Gaps = 5/268 (1%)
Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALH 81
           W  +GHV  CRIAQ  L + AA AVK LLPE  + DL ++C W D V+  + Y W+S LH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 82  FIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLF 141
           FIDTPD  C + Y RDC D+ GVK  CVAGAI N+TTQL            YN+TEALLF
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLF 119
Query: 142 LSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGL 201
           LSHF+GDIHQP+HVGFTSD GGN+ID+ W+  K  LHHVWD  II TA + +Y  +I+ L
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179
Query: 202 VDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY 260
            + I+ + T   W+D +  W  C  N  +C + +A+E I  AC W YKGV  G  L D+Y
Sbjct: 180 EEDIEGDFTDGIWSDDLASWREC-GNVFSCVNKFATESINIACKWGYKGVEAGETLSDDY 238
Query: 261 FNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           FNSRLPIV  R+AQGG+RLA  LN +FG
Sbjct: 239 FNSRLPIVMKRVAQGGIRLAMLLNNVFG 266

>pdb|1AK0|A Chain A, P1 Nuclease In Complex With A Substrate Analog Length = 270

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 125/285 (43%), Gaps = 40/285 (14%)
Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHY--HWSSALH 81
           WG  GH  V  +AQ  +   AA   + +L  S+ + L S+ +WAD  +      WS++LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 82  FIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEA 138
           FID  DN    C   Y RDC    G  G C   AI NYT ++             N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV-----SDSSLSSENHAEA 110
Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNI 198
           L FL HFIGD+ QPLH    +  GGN I+V +      LH  WD  + +        S+ 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 199 DGLVDAIQQNITT-DWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKG-------- 249
           +     + QNI + ++      W     +N        SE I  A  WA           
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGW--IKGDNI-------SEPITTATRWASDANALVCTVV 220
Query: 250 VSEGSV------LEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           +  G+       L   Y++S +  ++L++A+GG RLA  +N I G
Sbjct: 221 MPHGAAALQTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	1e-82
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	2e-72
1ah7_A	245	Phospholipase C; phospholipid hydrolysis, hydrolas	1e-04

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} Length = 277

 Score =  249 bits (636), Expect = 1e-82
 Identities = 146/268 (54%), Positives = 179/268 (66%), Gaps = 5/268 (1%)

Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALH 81
           W  +GHV  CRIAQ  L + AA AVK LLPE  + DL ++C W D V+    Y W+S LH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60

Query: 82  FIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLF 141
           FIDTPD  C + Y RDC D+ GVK  CVAGAI N+TTQL  Y    +S   YN+TEALLF
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQLSHYRE-GTSDRRYNMTEALLF 119

Query: 142 LSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGL 201
           LSHF+GDIHQP+HVGFTSD GGN+ID+ W+  K  LHHVWD  II TA + +Y  +I+ L
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179

Query: 202 VDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY 260
            + I+ N T   W+D +  W  C  N  +C + +A+E I  AC W YKGV  G  L D+Y
Sbjct: 180 EEDIEGNFTDGIWSDDLASWRECG-NVFSCVNKFATESINIACKWGYKGVEAGETLSDDY 238

Query: 261 FNSRLPIVKLRLAQGGVRLAATLNRIFG 288
           FNSRLPIV  R+AQGG+RLA  LN +FG
Sbjct: 239 FNSRLPIVMKRVAQGGIRLAMLLNNVFG 266

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2 Length = 270

 Score =  222 bits (567), Expect = 2e-72
 Identities = 84/276 (30%), Positives = 120/276 (43%), Gaps = 22/276 (7%)

Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFH--YHWSSALH 81
           WG  GH  V  +AQ  +   AA   + +L  S+ + L S+ +WAD  +      WS++LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 82  FIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
           FID  DN    C   Y RDC         C   AI NYT ++     + SS S  N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSSG-----CSISAIANYTQRV-----SDSSLSSENHAEA 110

Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNI 198
           L FL HFIGD+ QPLH       GGN I+V +      LH  WD  + +        S+ 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAY-AVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 199 DGLVDAIQQNITTD-WADLVKKWETCSA--NNTACPDVYASEGIKAACDWAYK---GVSE 252
           +     + QNI +  +      W               +AS+     C           +
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ 229

Query: 253 GSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
              L   Y++S +  ++L++A+GG RLA  +N I G
Sbjct: 230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265

>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A Length = 245

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 41/272 (15%), Positives = 82/272 (30%), Gaps = 45/272 (16%)

Query: 22  HCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADN--DLGSVCTWADHV-KFHYHWSS 78
           H  G + H+ +   A   +        +  + +  +   +L +    AD+   ++ + + 
Sbjct: 7   HKEGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEWRTELENGIYAADYENPYYDNSTF 66

Query: 79  ALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
           A HF D PDN  TY        E G K                 +  A  S+   ++ +A
Sbjct: 67  ASHFYD-PDNGKTYIPFAKQAKETGAK----------------YFKLAGESYKNKDMKQA 109

Query: 139 LLFL---SHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYN 195
             +L    H++GD++QP+H            +    +  Q  H  ++N +    +   Y 
Sbjct: 110 FFYLGLSLHYLGDVNQPMHAA----------NFTNLSYPQGFHSKYENFVDTIKDN--YK 157

Query: 196 SNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSV 255
                     +     +W                      S  +       +   +    
Sbjct: 158 VTDGNGYWNWKGTNPEEWIH----------GAAVVAKQDYSGIVNDNTKDWFVKAAVSQE 207

Query: 256 LEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
             D++     P+   RL       A  +   F
Sbjct: 208 YADKWRAEVTPMTGKRLMDAQRVTAGYIQLWF 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	100.0
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	100.0
1ah7_A	245	Phospholipase C; phospholipid hydrolysis, hydrolas	100.0
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	96.48
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	95.92

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} PDB: 4dj4_A*

Probab=100.00  E-value=9.3e-78  Score=542.25  Aligned_cols=263  Identities=55%  Similarity=1.067  Sum_probs=239.4

Q ss_pred             cChhhHHHHHHHHHhccCHHHHHHHHhhCCCCCCCccccccccccccCc--cCCCCCCcccccCCCCCCCcccCCCcccc
Q 023045           24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNLCTYQYNRDCKDE  101 (288)
Q Consensus        24 Wg~~GH~~Va~iA~~~L~~~~~~~l~~lL~~~~~~~~~~~a~WaD~ir~--~~~~~~~wHyid~p~~~~~~~~~~dc~~~  101 (288)
                      ||..|||+||+||+++|+|+++++|++||+...+.+|+++|+|||+||+  +++|+++|||+|+|++.|++++.+||++.
T Consensus         1 Wg~~GH~~Va~IA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~p~~~c~~~~~rdc~~~   80 (277)
T 3sng_A            1 WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQ   80 (277)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHHHSCGGGTTCGGGTTTHHHHHTTSGGGGGGGGGGCCCBCTTTCCCCHHHHCBCT
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCcccccCHHHHhhhHhhhcccccccccCcceeecCCCCcCCCcccCCcccc
Confidence            9999999999999999999999999999986667899999999999996  78999999999999999999999999865


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCchhhh
Q 023045          102 DGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVW  181 (288)
Q Consensus       102 ~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~~W  181 (288)
                      .+++++||++||.+++++|++.+.... .+.+++.+|||||||||||||||||+++.+|+|||+|+|.|+|+++|||+||
T Consensus        81 ~~~~~~cvv~aI~~~t~~L~~~~~~~~-~~~~~~~~aLkfLvHfvGDiHQPLH~g~~~D~GGN~i~V~~~g~~~NLH~vW  159 (277)
T 3sng_A           81 HGVKDMCVAGAIQNFTTQLSHYREGTS-DRRYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVW  159 (277)
T ss_dssp             TCCBTCSHHHHHHHHHHHHTTTTTCCC-CTTCCHHHHHHHHHHHHHHHHSGGGGCBTTTTTTTTCEEEETTEEEEHHHHH
T ss_pred             cCCCcchHHHHHHHHHHHHcCCCCccc-CChHHHHHHHHHHHHHhccccCCccCCCCcCCCCCeEEEEECCccCchHHHH
Confidence            556799999999999999998752100 0145899999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhHHHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhHhhccCCCCCChHHHHHHHHHHHHHhccCCCCCCCCCCHHH
Q 023045          182 DNNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY  260 (288)
Q Consensus       182 Ds~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~la~~~vY~~~~~~~~ls~~Y  260 (288)
                      |++|+++..+.++..++.+|++.|.++|+.+ |++++++|..|.+ ...||.+|+.||+++||++||+.++++.+|+++|
T Consensus       160 Ds~ii~~~~~~~~~~~~~~~a~~L~~~i~~~~~~~~~~~w~~~~~-~~~~~~~Wa~ES~~la~~~vY~~~~~~~~L~~~Y  238 (277)
T 3sng_A          160 DREIILTAAKDYYAKDINLLEEDIEGNFTDGIWSDDLASWRECGN-VFSCVNKFATESINIACKWGYKGVEAGETLSDDY  238 (277)
T ss_dssp             HTHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTHHHHHCCCS-HHHHHHHHHHHHHHHHHHTTSTTCCTTCEECHHH
T ss_pred             HhhhhhhhhccccccCHHHHHHHHHHHhhcccchhHHHHHhhccc-ccCCHHHHHHHHHHHHHHHhccCCCCCCccCHHH
Confidence            9999998877777778899999998888875 8888889987753 5679999999999999999999988888999999


Q ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045          261 FNSRLPIVKLRLAQGGVRLAATLNRIFG  288 (288)
Q Consensus       261 ~~~~~~v~~~ql~~AG~RLA~~Ln~i~~  288 (288)
                      +.+++|++|+||++||||||.+||+||+
T Consensus       239 ~~~~~~i~e~qla~aG~RLA~~LN~i~~  266 (277)
T 3sng_A          239 FNSRLPIVMKRVAQGGIRLAMLLNNVFG  266 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999985

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2

Probab=100.00  E-value=4.6e-71  Score=498.16  Aligned_cols=254  Identities=31%  Similarity=0.531  Sum_probs=223.9

Q ss_pred             cChhhHHHHHHHHHhccCHHHHHHHHhhCCCCCCCccccccccccccCc--cCCCCCCcccccCCC---CCCCcccCCCc
Q 023045           24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPD---NLCTYQYNRDC   98 (288)
Q Consensus        24 Wg~~GH~~Va~iA~~~L~~~~~~~l~~lL~~~~~~~~~~~a~WaD~ir~--~~~~~~~wHyid~p~---~~~~~~~~~dc   98 (288)
                      ||.+|||+||+||+++|+++++++|+++|+.....+|+++|+|||+||+  .++++++|||+|+|.   ..|++++.++|
T Consensus         1 Wg~~GH~~va~iA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~~~~p~~~c~~~~~rdc   80 (270)
T 1ak0_A            1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC   80 (270)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCCCCcccHHHHccchhhcccCCCCCccccccCCCCcCCCCcCCCCcccCCC
Confidence            9999999999999999999999999999986655679999999999997  579999999999965   45899999999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCch
Q 023045           99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLH  178 (288)
Q Consensus        99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH  178 (288)
                      +     +++||+++|++++++|++.+.+     .+++.++||||+|||||||||||++ .+|+|||+|+|+|+|+++|||
T Consensus        81 ~-----~~~cv~~ai~~~~~~L~~~~~s-----~~~~~~aL~fLvH~vGDiHQPLH~~-~~D~GGN~i~V~~~g~~~nLH  149 (270)
T 1ak0_A           81 G-----SSGCSISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH  149 (270)
T ss_dssp             C-----TTCCHHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred             C-----CcccHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHHHcccccCcccCc-CcCCCCCeEEEEECCccCccH
Confidence            5     4899999999999999987654     4589999999999999999999998 689999999999999999999


Q ss_pred             hhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhHhhccC--CCCCChHHHHHHHHHHHHHhccCCC---CC
Q 023045          179 HVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSA--NNTACPDVYASEGIKAACDWAYKGV---SE  252 (288)
Q Consensus       179 ~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~--~~~~~~~~Wa~Es~~la~~~vY~~~---~~  252 (288)
                      +|||++|+++..+.++..+..+|++.|.+.++.+ |+++.+.|.+|..  ....||.+|+.||++++|++||+..   .+
T Consensus       150 ~vWDs~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~wa~ES~~la~~~vY~~~~~~~~  229 (270)
T 1ak0_A          150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ  229 (270)
T ss_dssp             HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTTSTTCSGGGS
T ss_pred             HHHhccchhhhccccCcchHHHHHHHHHHhcccCCCchhHHHhhcCccccccccCHHHHHHHHHHHHHHHhcccCccccc
Confidence            9999999988655443335567888888777766 8888999987632  2346899999999999999999753   35


Q ss_pred             CCCCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045          253 GSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG  288 (288)
Q Consensus       253 ~~~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~~  288 (288)
                      +.+|+++|+.+++|++++||++||+|||.+||+||+
T Consensus       230 ~~~l~~~Y~~~~~~v~e~qla~aG~RLA~~Ln~i~~  265 (270)
T 1ak0_A          230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG  265 (270)
T ss_dssp             SSBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678999999999999999999999999999999985

>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A

Probab=100.00  E-value=1.2e-43  Score=315.20  Aligned_cols=213  Identities=18%  Similarity=0.231  Sum_probs=163.0

Q ss_pred             ChhhHHHHHHHHHhccCHHHHHHHHh---hCCCCCCCccccccccccccCcc-C-CCCCCcccccCCCCCCCcccCCCcc
Q 023045           25 GNDGHVAVCRIAQSRLREAAADAVKQ---LLPESADNDLGSVCTWADHVKFH-Y-HWSSALHFIDTPDNLCTYQYNRDCK   99 (288)
Q Consensus        25 g~~GH~~Va~iA~~~L~~~~~~~l~~---lL~~~~~~~~~~~a~WaD~ir~~-~-~~~~~wHyid~p~~~~~~~~~~dc~   99 (288)
                      |..||+.|+++|.+.|+.+....+++   .++.. .+.+...|+|||+ |.. + +++.+|||+|+|.+ |++.+.++|.
T Consensus        10 ~~~tH~~I~~~A~~~L~~~~~~~~~~~~~~~~~w-~D~i~~~~~w~D~-k~~~~~~~~~~~Hy~d~~~~-~~~~~~~~~~   86 (245)
T 1ah7_A           10 GVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEW-RTELENGIYAADY-ENPYYDNSTFASHFYDPDNG-KTYIPFAKQA   86 (245)
T ss_dssp             GGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHT-HHHHHHHHHHTTT-STTTTTTTTCGGGCCBTTTT-BCSSTTCCCH
T ss_pred             CCcHHHHHHHHHHHHhccccchHHHHHHHHHHhC-HHHHHhcCcCCCc-ccccccccCCCcccccCCCC-CCCCCCCCCc
Confidence            67899999999999997764221221   12211 3467777889999 753 3 78999999999975 8988889995


Q ss_pred             ccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCchh
Q 023045          100 DEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHH  179 (288)
Q Consensus       100 ~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~  179 (288)
                            .+|++.+|.++++.+++.+       ..++.++|+||+|||||||||||       |||.+.   +|+.+|||+
T Consensus        87 ------~~~~~~~~~~~~~~l~~~~-------~~~~~~aL~~l~H~vGDiHQPlH-------~gn~~~---~~~~~nlH~  143 (245)
T 1ah7_A           87 ------KETGAKYFKLAGESYKNKD-------MKQAFFYLGLSLHYLGDVNQPMH-------AANFTN---LSYPQGFHS  143 (245)
T ss_dssp             ------HHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTSTTT-------TTTCCT---TSSSTTHHH
T ss_pred             ------chHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhcCCCCC-------CCcccc---CCCCCCchH
Confidence                  3399999999999998854       23789999999999999999999       678876   578899999


Q ss_pred             hhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCCCCCChHHHHHHHHHHHHHhccCCCCCCCCCCHH
Q 023045          180 VWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDE  259 (288)
Q Consensus       180 ~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~la~~~vY~~~~~~~~ls~~  259 (288)
                      +|| .+++..... +..            ...   .+...|      ...||.+|+.||+++ |+.+|+.+..+.. +.+
T Consensus       144 ~WD-~~i~~~~~~-y~~------------~~~---~~~~~~------~~~~~~~W~~Es~~~-a~~~Y~~~~~~~~-~~~  198 (245)
T 1ah7_A          144 KYE-NFVDTIKDN-YKV------------TDG---NGYWNW------KGTNPEEWIHGAAVV-AKQDYSGIVNDNT-KDW  198 (245)
T ss_dssp             HHH-HHHHHHGGG-GCC------------CSS---CCCTTC------SCSCHHHHHHHHHHH-HHHTGGGTSSHHH-HHH
T ss_pred             HHH-HHHHHHhhc-ccc------------cch---HHHHHH------hcCCHHHHHHHHHHH-HHHHhccccCCCc-ccc
Confidence            999 788763222 211            000   112223      236999999999999 6679987655544 666


Q ss_pred             HHh---------c----cHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045          260 YFN---------S----RLPIVKLRLAQGGVRLAATLNRIFG  288 (288)
Q Consensus       260 Y~~---------~----~~~v~~~ql~~AG~RLA~~Ln~i~~  288 (288)
                      |+.         +    ++|++++||++||+|||.+||.||+
T Consensus       199 Y~~~~~~~~~~~~~~~~~~~v~~~qL~~aG~RLA~~Ln~i~~  240 (245)
T 1ah7_A          199 FVKAAVSQEYADKWRAEVTPMTGKRLMDAQRVTAGYIQLWFD  240 (245)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            773         5    9999999999999999999999984

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A

Probab=96.48  E-value=0.0046  Score=56.84  Aligned_cols=219  Identities=18%  Similarity=0.140  Sum_probs=105.1

Q ss_pred             hhhHHHHHHHHHhccCHHH-------HHHHHhhCCCCCCCccccccccccccCccCCCCCCcccccCCCCCCCcccCCCc
Q 023045           26 NDGHVAVCRIAQSRLREAA-------ADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDC   98 (288)
Q Consensus        26 ~~GH~~Va~iA~~~L~~~~-------~~~l~~lL~~~~~~~~~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc   98 (288)
                      ..-|..|+.=|.+.|..+.       .+.-.++|... ...|-.-++|||.=...+. .-.-||.|...+ .++......
T Consensus         8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~~-~~~~~~~~w   84 (370)
T 2wxu_A            8 TGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKEN-MHELQLGSTYPDYDKNAYD-LYQDHFWDPDID-NNFSKDNSW   84 (370)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGTCTTCCT-TCGGGCCCTTC----------C
T ss_pred             CchHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCCC-CCccccccc
Confidence            4569999998888884322       22222333211 2367788999998333221 223488876443 222111000


Q ss_pred             cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccC--CCCCCCCCceEEeeccccCC
Q 023045           99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG--FTSDRGGNTIDVHWYTRKQV  176 (288)
Q Consensus        99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~--~~~D~GGN~~~V~~~g~~~n  176 (288)
                      --.. .-.....+....+...-.+.-....   ...-.+.|-..+|+|+|+.||+|+.  ..-|.+              
T Consensus        85 ~~~~-~~~~tA~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~--------------  146 (370)
T 2wxu_A           85 YLAY-SIPDTGESQIRKFSALARYEWQRGN---YKQATFYLGEAMHYFGDIDTPYHPANVTAVDSA--------------  146 (370)
T ss_dssp             TTTB-CBCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTSSTTTTTCCTTTCT--------------
T ss_pred             cccc-CCCCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCCCcccccccccCCc--------------
Confidence            0000 0011233444444443222111110   1134588999999999999999994  111111              


Q ss_pred             chhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhHhhccCCCCCChHHHHHHHHHH----HHHhccCCCC
Q 023045          177 LHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKA----ACDWAYKGVS  251 (288)
Q Consensus       177 LH~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~l----a~~~vY~~~~  251 (288)
                      -|.-.++-+.... ..+ .-+....      ..... |.+   .+      ...++.+|..|....    |.+..|+...
T Consensus       147 gH~~fE~~V~~~~-~~y-~~~t~g~------~~~~~~y~~---~~------~~~~~~~Wv~e~ak~~Ak~a~~~Y~~~~~  209 (370)
T 2wxu_A          147 GHVKFETFAEERK-EQY-KINTAGC------KTNEAFYTD---IL------KNKDFNAWSKEYARGFAKTGKSIYYSHAS  209 (370)
T ss_dssp             HHHHHHHHHHHHG-GGG-CCSCCSS------CTTSHHHHH---HH------HCSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHhh-hhe-eeccCCc------ccccceeec---cc------ccCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            1887777644321 111 1000000      00000 000   01      125788999988774    5542233221


Q ss_pred             CCCCCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 023045          252 EGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF  287 (288)
Q Consensus       252 ~~~~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~  287 (288)
                       ......+|    ..+++.+|..|=..+|..|-..|
T Consensus       210 -~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f~  240 (370)
T 2wxu_A          210 -MSHSWDDW----DYAAKVTLANSQKGTAGYIYRFL  240 (370)
T ss_dssp             -TTSCHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence             22233455    56666777777777777775543

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3

Probab=95.92  E-value=0.0085  Score=55.10  Aligned_cols=220  Identities=14%  Similarity=0.088  Sum_probs=107.2

Q ss_pred             hhhHHHHHHHHHhccCHHH-------HHHHHhhCCCCCCCccccccccccccCccCCCCCCcccccCCCCCCCcccCCCc
Q 023045           26 NDGHVAVCRIAQSRLREAA-------ADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDC   98 (288)
Q Consensus        26 ~~GH~~Va~iA~~~L~~~~-------~~~l~~lL~~~~~~~~~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc   98 (288)
                      ..-|..|+.=|.+.|..+.       .+.-.++|... ...|-.-++|||.=...+. .-.-||.|...+ .++......
T Consensus         8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~~-~~~~~~~~w   84 (370)
T 1olp_A            8 TGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAYS-LYQDHFWDPDTD-HNFTQDNKW   84 (370)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCCT-TCGGGCCBTTTT-BCHHHHSGG
T ss_pred             CchHHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCCC-CCccccccc
Confidence            4569999999999994322       23333333321 2457788999998333221 223488876443 222111000


Q ss_pred             cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccC--CCCCCCCCceEEeeccccCC
Q 023045           99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG--FTSDRGGNTIDVHWYTRKQV  176 (288)
Q Consensus        99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~--~~~D~GGN~~~V~~~g~~~n  176 (288)
                      --.. .-.....+....+...-.+.-....   ...-.+.|-..+|+|+|+.||+|+.  ..-|.+              
T Consensus        85 ~~~~-~~~~tA~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~--------------  146 (370)
T 1olp_A           85 YLSY-AVPDNAESQTRKFATLAKNEWDKGN---YEKAAWYLGQGMHYFGDLNTPYHAANVTAVDSP--------------  146 (370)
T ss_dssp             GGGG-CCSCCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTSHHHHTTCCTTTCH--------------
T ss_pred             cccc-CCCCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCCCcccccccccCCc--------------
Confidence            0000 0011233333444443222111110   1134588999999999999999994  111111              


Q ss_pred             chhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCCCCCChHHHHHHHHHH----HHHhccCCCCC
Q 023045          177 LHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKA----ACDWAYKGVSE  252 (288)
Q Consensus       177 LH~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~l----a~~~vY~~~~~  252 (288)
                      -|.-.++-+.... ..+ .-.            +.++.....-+..  .....+|.+|..|....    |.+.-|+... 
T Consensus       147 gH~~yE~~V~~~~-~~y-~i~------------t~g~~~~~~~y~~--~~~~~~~~~Wi~e~a~~~Ak~a~~~Y~~~~~-  209 (370)
T 1olp_A          147 GHVKFETYAEERK-DTY-RLD------------TTGYNTDDAFYKD--TLKNDNFNEWSKGYCKYWAKKAKNLYYSHAT-  209 (370)
T ss_dssp             HHHHHHHHHHHHG-GGG-CCS------------CCSSCTTSHHHHG--GGSCSCHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred             CHHHHHHHHHHhh-hhe-eec------------cCCcccccceeec--ccccCCHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence            1777777544321 111 100            0000000000000  01236889999987774    4432222111 


Q ss_pred             CCCCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 023045          253 GSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF  287 (288)
Q Consensus       253 ~~~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~  287 (288)
                      ......+|    ..+++.+|..|=..+|..|-..|
T Consensus       210 ~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f~  240 (370)
T 1olp_A          210 MSNSWDDW----EYAASHGVGNAQKGVAGYLYRFL  240 (370)
T ss_dssp             TTSCHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223444    57777888888888888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1ak0a_	264	a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [	2e-76
d1ah7a_	245	a.124.1.1 (A:) Bacterial phosholipase C {Bacillus	3e-51

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]} Length = 264

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

 Score =  231 bits (590), Expect = 2e-76
 Identities = 81/275 (29%), Positives = 118/275 (42%), Gaps = 22/275 (8%)

Query: 24  WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALH 81
           WG  GH  V  +AQ  +   AA   + +L  S+ + L S+ +WAD  +      WS++LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 82  FIDTPD---NLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
           FID  D     C   Y RDC         C   AI NYT ++        S S  N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSSG-----CSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNI 198
           L FL HFIGD+ QPLH       GGN I+V +      LH  WD  + +        S+ 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAY-AVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 199 DGLVDAIQQNITTD-WADLVKKWETCS--ANNTACPDVYASEGIKAACDWAYKGVS---E 252
           +     + QNI +  +      W      +        +AS+     C       +   +
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ 229

Query: 253 GSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
              L   Y++S +  ++L++A+GG RLA  +N I 
Sbjct: 230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIH 264

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]} Length = 245

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

 Score =  166 bits (421), Expect = 3e-51
 Identities = 38/272 (13%), Positives = 76/272 (27%), Gaps = 39/272 (14%)

Query: 19  PVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLP--ESADNDLGSVCTWADHVKFHY-H 75
              H  G + H+ +   A   +        +  +        +L +    AD+   +Y +
Sbjct: 4   EDKHKEGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEWRTELENGIYAADYENPYYDN 63

Query: 76  WSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNL 135
            + A HF D  +   TY        E G K          +     SY +     + + L
Sbjct: 64  STFASHFYDPDNG-KTYIPFAKQAKETGAK---------YFKLAGESYKNKDMKQAFFYL 113

Query: 136 TEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYN 195
                   H++GD++QP+H            +    +  Q  H  ++N +    +   Y 
Sbjct: 114 G----LSLHYLGDVNQPMHAA----------NFTNLSYPQGFHSKYENFVDTIKDN--YK 157

Query: 196 SNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSV 255
                     +     +W                    Y+   +       +   +    
Sbjct: 158 VTDGNGYWNWKGTNPEEW---------IHGAAVVAKQDYSGI-VNDNTKDWFVKAAVSQE 207

Query: 256 LEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
             D++     P+   RL       A  +   F
Sbjct: 208 YADKWRAEVTPMTGKRLMDAQRVTAGYIQLWF 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1ak0a_	264	P1 nuclease {Penicillium citrinum [TaxId: 5077]}	100.0
d1ah7a_	245	Bacterial phosholipase C {Bacillus cereus [TaxId:	100.0
d1ca1a1	249	Alpha-toxin, N-terminal domain {Clostridium perfri	97.3
d1olpa1	249	Alpha-toxin, N-terminal domain {Clostridium absonu	95.76

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

Probab=100.00  E-value=3.1e-70  Score=489.19  Aligned_cols=253  Identities=32%  Similarity=0.528  Sum_probs=219.4

Q ss_pred             cChhhHHHHHHHHHhccCHHHHHHHHhhCCCCCCCccccccccccccCc--cCCCCCCcccccCCCC---CCCcccCCCc
Q 023045           24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDN---LCTYQYNRDC   98 (288)
Q Consensus        24 Wg~~GH~~Va~iA~~~L~~~~~~~l~~lL~~~~~~~~~~~a~WaD~ir~--~~~~~~~wHyid~p~~---~~~~~~~~dc   98 (288)
                      ||.+|||+||+||+++|+|+++++|++||+..+..+|+++|+|||+||+  .++++.+|||+|+|.+   .|.+.+.++|
T Consensus         1 Wg~~GH~~Va~iA~~~L~~~~~~~v~~iL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyvn~p~~~~~~~~~~~~~~~   80 (264)
T d1ak0a_           1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC   80 (264)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred             CCcHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCceeeeeChHhhcCCCccchhhccccCCCCCCCCccccccccccC
Confidence            9999999999999999999999999999997666789999999999996  6789999999999764   4567777889


Q ss_pred             cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCch
Q 023045           99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLH  178 (288)
Q Consensus        99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH  178 (288)
                      +     +++|+++||+++++.|++.+.+     .+++++|||||||||||||||||++ ..|+|||++.|.|+|+++|||
T Consensus        81 ~-----~~~~i~~ai~~~~~~l~~~~~s-----~~~~~~aL~~LvHlvGDiHQPLH~~-~~D~GGN~i~V~~~g~~~NLH  149 (264)
T d1ak0a_          81 G-----SSGCSISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH  149 (264)
T ss_dssp             C-----TTCCHHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred             C-----CCccHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHhhcccccccc-CcCCCCCeeEEEECCccCcHH
Confidence            4     5899999999999999987655     4489999999999999999999987 789999999999999999999


Q ss_pred             hhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhHhhccCC--CCCChHHHHHHHHHHHHHhccCCCC---C
Q 023045          179 HVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSAN--NTACPDVYASEGIKAACDWAYKGVS---E  252 (288)
Q Consensus       179 ~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~--~~~~~~~Wa~Es~~la~~~vY~~~~---~  252 (288)
                      +||||+|+++.+..+.......+++.|.+++... +.++...|..+...  +..||.+|+.||+++||+++|+...   .
T Consensus       150 ~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Es~~la~~~~y~~~~~~~~  229 (264)
T d1ak0a_         150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ  229 (264)
T ss_dssp             HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTTSTTCSGGGS
T ss_pred             HHHhhhHHhhhccccccchHHHHHHHHHHhccccccHHHhhhhhccccccccccCHHHHHHHHHHHHHHHhhcccccccc
Confidence            9999999988765543333456777787777654 67777788665332  3458999999999999999987643   4


Q ss_pred             CCCCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 023045          253 GSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF  287 (288)
Q Consensus       253 ~~~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~  287 (288)
                      +.+|+++|+.++++++++||++||+|||.+||+||
T Consensus       230 ~~~l~~~Y~~~~~~i~~~ql~~AG~RLA~~LN~if  264 (264)
T d1ak0a_         230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIH  264 (264)
T ss_dssp             SSBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            56799999999999999999999999999999998

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=1.1e-40  Score=293.88  Aligned_cols=231  Identities=16%  Similarity=0.119  Sum_probs=169.6

Q ss_pred             cccccChhhHHHHHHHHHhccCHHHH---HHHHhhCCCCCCCccccccccccccCccC-CCCCCcccccCCCCCCCcccC
Q 023045           20 VIHCWGNDGHVAVCRIAQSRLREAAA---DAVKQLLPESADNDLGSVCTWADHVKFHY-HWSSALHFIDTPDNLCTYQYN   95 (288)
Q Consensus        20 ~a~AWg~~GH~~Va~iA~~~L~~~~~---~~l~~lL~~~~~~~~~~~a~WaD~ir~~~-~~~~~wHyid~p~~~~~~~~~   95 (288)
                      ...+||..||+.|+.+|.+.|++++.   +.+-++|... ..+|.+.++|||+++..+ .++.+|||+|.|.+ +++...
T Consensus         5 ~~~~~g~~tH~~I~~~A~~~L~~d~~~~~~~~~~~l~~y-~~~l~~g~~waD~~~~~~~~~~~~~Hf~~~~~~-~~~~~~   82 (245)
T d1ah7a_           5 DKHKEGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEW-RTELENGIYAADYENPYYDNSTFASHFYDPDNG-KTYIPF   82 (245)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHT-HHHHHHHHHHTTTSTTTTTTTTCGGGCCBTTTT-BCSSTT
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHhcCcCccccccccccccCCceeeeCCCC-CCcCCC
Confidence            45799999999999999999988653   3333444322 357999999999999754 47889999997765 565544


Q ss_pred             CCccccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccC
Q 023045           96 RDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQ  175 (288)
Q Consensus        96 ~dc~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~  175 (288)
                      .+|      ..++++.+++.....+++.+.+       ...++|++++|||||||||||++          .|.++|+.+
T Consensus        83 ~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~h~~~d~~qP~H~~----------~v~~~~~~~  139 (245)
T d1ah7a_          83 AKQ------AKETGAKYFKLAGESYKNKDMK-------QAFFYLGLSLHYLGDVNQPMHAA----------NFTNLSYPQ  139 (245)
T ss_dssp             CCC------HHHHHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHHHHTSTTTTT----------TCCTTSSST
T ss_pred             CCC------hHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHhhcCCCcccc----------ccccCCCCC
Confidence            444      3567778888888888775422       45789999999999999999987          266788899


Q ss_pred             CchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhHhhccCCCCCChHHHHHHHHHHHHHhccCCCCCCC
Q 023045          176 VLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGS  254 (288)
Q Consensus       176 nLH~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~la~~~vY~~~~~~~  254 (288)
                      |||++||+.+++... .+.......+.     ++... ..+....+..      .++.+|+.||..+++. +|...+.+.
T Consensus       140 NLH~~WDs~i~~~~~-~~~~~~~~~~~-----~~~~~~~~~~i~~~~~------~~~~~w~~es~~~~~~-~Y~~~~~~~  206 (245)
T d1ah7a_         140 GFHSKYENFVDTIKD-NYKVTDGNGYW-----NWKGTNPEEWIHGAAV------VAKQDYSGIVNDNTKD-WFVKAAVSQ  206 (245)
T ss_dssp             THHHHHHHHHHHHGG-GGCCCSSCCCT-----TCSCSCHHHHHHHHHH------HHHHTGGGTSSHHHHH-HHHHHTTCH
T ss_pred             CcHHHHHhhHHHhhh-hhhhhHHHHHH-----HHhccCHHHHHHHHhh------cCHHHHHHHHHHHHHH-HhccCCCCC
Confidence            999999999886532 11100100010     11000 0111111222      4678899999998876 787777788


Q ss_pred             CCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045          255 VLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG  288 (288)
Q Consensus       255 ~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~~  288 (288)
                      .++++|..++.|++++||.+||+|||.+||.+|+
T Consensus       207 ~l~~~Y~~~~~~~v~~rL~~ag~rlAg~Ln~~Fd  240 (245)
T d1ah7a_         207 EYADKWRAEVTPMTGKRLMDAQRVTAGYIQLWFD  240 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999984

>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

Probab=97.30  E-value=0.00078  Score=56.75  Aligned_cols=141  Identities=17%  Similarity=0.127  Sum_probs=75.4

Q ss_pred             hhhHHHHHHHHHhccCHHH-------HHHHHhhCCCCCCCccccccccccccCccCCCCCCcccccCCCCCCCcccCCCc
Q 023045           26 NDGHVAVCRIAQSRLREAA-------ADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDC   98 (288)
Q Consensus        26 ~~GH~~Va~iA~~~L~~~~-------~~~l~~lL~~~~~~~~~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc   98 (288)
                      ..-|..|+.=|.+.|..+.       .+.-.++|.+. ...+..-+.|||.=...++ +-..||.|...+ .++......
T Consensus         8 ~~TH~~i~~qA~~iL~nD~~~~~~~~~~~~~~~L~~y-~~~~~~G~~~~D~~~~~y~-~f~~HFy~p~~~-k~~~g~~~~   84 (249)
T d1ca1a1           8 TGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKEN-MHELQLGSTYPDYDKNAYD-LYQDHFWDPDTD-NNFSKDNSW   84 (249)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGTCTTCCT-TCGGGCCCTTTC-SSTTTCSCC
T ss_pred             CchHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH-HHHHhcCCcCcccCCccCc-ccccccccCCCC-CCccCcccc
Confidence            3469999999988875431       12212222211 2357778999997655443 345699876543 222211100


Q ss_pred             cccCCCCCCcHHHHHHHHHHHhccC-CCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCc
Q 023045           99 KDEDGVKGRCVAGAINNYTTQLLSY-NSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVL  177 (288)
Q Consensus        99 ~~~~~~~~~cv~~ai~~~~~~L~~~-~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nL  177 (288)
                      .-.. .-..........+...-... ....    ...--+.|-...|+++|+.||+|++       |...     ...+-
T Consensus        85 ~~~~-~~~~~a~~~~~ky~~~A~~~~~~~~----~~~a~~~LG~a~Hy~~D~~~P~Ha~-------N~t~-----~~~~~  147 (249)
T d1ca1a1          85 YLAY-SIPDTGESQIRKFSALARYEWQRGN----YKQATFYLGEAMHYFGDIDTPYHPA-------NVTA-----VDSAG  147 (249)
T ss_dssp             CCSS-CCCCCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHTSSTTTT-------TCCT-----TTCTH
T ss_pred             cccc-cccchHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHhcCCCccccc-------cccc-----cCccc
Confidence            0000 01233444444444432221 1111    1123477899999999999999986       1111     12345


Q ss_pred             hhhhhhhhH
Q 023045          178 HHVWDNNII  186 (288)
Q Consensus       178 H~~WDs~~~  186 (288)
                      |+..|+-+-
T Consensus       148 H~~yEn~V~  156 (249)
T d1ca1a1         148 HVKFETFAE  156 (249)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888643

>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium absonum [TaxId: 29369]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium absonum [TaxId: 29369]

Probab=95.76  E-value=0.0039  Score=52.31  Aligned_cols=221  Identities=14%  Similarity=0.099  Sum_probs=106.3

Q ss_pred             hhhHHHHHHHHHhccCH-------HHHHHHHhhCCCCCCCccccccccccccCccCCCCCCcccccCCCCCCCcccCCCc
Q 023045           26 NDGHVAVCRIAQSRLRE-------AAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDC   98 (288)
Q Consensus        26 ~~GH~~Va~iA~~~L~~-------~~~~~l~~lL~~~~~~~~~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc   98 (288)
                      ..-|.-|+.-|...|..       +..+.-.++|.+. ...+..-++|||.=...+. +-.-||.|...+ .++.-..+-
T Consensus         8 ~~TH~~I~~qAi~IL~nd~~~~~~~~~~~~~~~l~~~-~~~~~~G~~~aD~d~~~y~-~f~~HFy~pdtg-k~~~g~~~~   84 (249)
T d1olpa1           8 TGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAYS-LYQDHFWDPDTD-HNFTQDNKW   84 (249)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCCT-TCGGGCCBTTTT-BCHHHHSGG
T ss_pred             cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHh-HHHHhcCCcCccCCCcccc-ccccccccCCCC-CCCcCCccc
Confidence            35699999999988832       2122111223211 1346677889996322221 123488876443 222111100


Q ss_pred             cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccc-cHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCc
Q 023045           99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEY-NLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVL  177 (288)
Q Consensus        99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~-~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nL  177 (288)
                      .... .-..........+...-.+.-...    .+ .--+.|-...|+++|+.||+|++       |...|     ..+.
T Consensus        85 ~~~~-~~~~~A~~~~~ky~~~A~~~~~~g----~~~~a~~~LG~a~Hy~~D~~qP~Haa-------N~t~v-----~~~~  147 (249)
T d1olpa1          85 YLSY-AVPDNAESQTRKFATLAKNEWDKG----NYEKAAWYLGQGMHYFGDLNTPYHAA-------NVTAV-----DSPG  147 (249)
T ss_dssp             GGGG-CCSCCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHTSHHHHT-------TCCTT-----TCHH
T ss_pred             cccc-cCCccHHHHHHHHHHHHHHHHHcc----CHHHHHHHHHhHhHHhhcCCCCcccc-------ccccc-----cccc
Confidence            0000 012234444444444332211111    11 23478899999999999999985       32222     2235


Q ss_pred             hhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCCCCCChHHHHHHHHHHHHHh---cc-CCCCCC
Q 023045          178 HHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDW---AY-KGVSEG  253 (288)
Q Consensus       178 H~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~la~~~---vY-~~~~~~  253 (288)
                      |+..++-+-+.. ..+ .-.....      ....  ......|      ...+|.+|..|....+...   +| +.. ..
T Consensus       148 H~~yE~yV~~~~-~~Y-~v~~~g~------~~~~--~~~~~~~------~~~~~~ewi~e~a~~~a~~a~~iy~~~~-~~  210 (249)
T d1olpa1         148 HVKFETYAEERK-DTY-RLDTTGY------NTDD--AFYKDTL------KNDNFNEWSKGYCKYWAKKAKNLYYSHA-TM  210 (249)
T ss_dssp             HHHHHHHHHHHG-GGG-CCSCCSS------CTTS--HHHHGGG------SCSCHHHHHHHHHHHHHHHHHHHHHHHC-ST
T ss_pred             HHHHHHHHHhhh-hhh-eeccccc------cccc--ccccccc------cCCCHHHHHHHHHHHHHHHHHHHHHHhc-cc
Confidence            888777543221 111 0000000      0000  0011112      2357888888777665442   23 221 12


Q ss_pred             CCCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 023045          254 SVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF  287 (288)
Q Consensus       254 ~~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~  287 (288)
                      ....    .+...++.+.|-.|-.=.|..|...|
T Consensus       211 ~~~~----~~~~~~~~~~L~~Aq~~TAGfi~~f~  240 (249)
T d1olpa1         211 SNSW----DDWEYAASHGVGNAQKGVAGYLYRFL  240 (249)
T ss_dssp             TSCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccH----HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            1222    34557888888888777777776554