Citrus Sinensis ID: 023053

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYKA
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccccccccccccccccccEEEEEEEEEEcccccc
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcEEEEcccccccccccccccEEEEEcccEEEEEcccccHHHHHHHHHHHcHHHcHcEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccccccccccHEEEHHHEHccccccccccccccccccccccccccHHHHHHcccEEccccccEEEEEEcccccccccccccccccEEEccEEEEcEEEEEccccc
mvklrhsrlqakkWSTLTLVLSMLFMLTIVLLMLLAMGIFyipigdddsppndltsFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDlakpymvkstvvdsktgqskdsrvrtssgtflkRGQDRIIRGIEKRiadftfipmehgegiQVLHYEVGQKYDAHYDYFLdefntknggQRMATLLMYLSDveeggetvfpaananfTSVRWWNELsecgkqglsvkpkrgdallfwsmrpdatldpsslhggcpvirgnkwsATKWMHVHEYKA
mvklrhsrlqakkwstLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEkrssiaeekgeqwteivAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTvvdsktgqskdsrvrtssgtflkrgqdriIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSEcgkqglsvkpkRGDALLFWSMRPDatldpsslhggcPVIRGNKWSATKWMHVHEYKA
MVKLRHSRLQAKKWSTLTLVLSmlfmltivllmllamGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYKA
**********AKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIG****************************EQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVV******************FLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVH****
******************LVLSMLFMLTIVLLMLLAMGI*******************RRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMV**************SRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYK*
*********QAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKS*******************GTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYKA
**************STLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVH****
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
Q20065539 Prolyl 4-hydroxylase subu yes no 0.649 0.346 0.352 4e-30
P54001534 Prolyl 4-hydroxylase subu yes no 0.628 0.338 0.352 7e-30
Q60715534 Prolyl 4-hydroxylase subu yes no 0.628 0.338 0.343 2e-28
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.628 0.338 0.338 7e-28
P13674534 Prolyl 4-hydroxylase subu yes no 0.628 0.338 0.338 7e-28
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.628 0.338 0.338 1e-27
P16924516 Prolyl 4-hydroxylase subu yes no 0.628 0.350 0.338 2e-27
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.625 0.337 0.318 2e-25
Q10576559 Prolyl 4-hydroxylase subu no no 0.649 0.334 0.304 3e-25
O15460535 Prolyl 4-hydroxylase subu no no 0.625 0.336 0.310 8e-25
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 113/210 (53%), Gaps = 23/210 (10%)

Query: 77  TEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLK 136
            EI+ ++P A ++ N +  +E E + +LA P + ++TV +SKTG+ + +  R S   +LK
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377

Query: 137 RGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDE----FNTKNGG 192
              D +I  + +RI DFT +     E +QV +Y +G  YD H+D+   E    F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437

Query: 193 QRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSM 252
            R+AT+L Y+S  E GG TVF             N L      G +V P + DAL ++++
Sbjct: 438 NRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNL 478

Query: 253 RPDATLDPSSLHGGCPVIRGNKWSATKWMH 282
           R D   D  + H  CPV+ G KW + KW+H
Sbjct: 479 RRDGEGDLRTRHAACPVLLGVKWVSNKWIH 508
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
18394842287 2-oxoglutarate (2OG) and Fe(II)-dependen 0.993 0.996 0.790 1e-136
297850430287 oxidoreductase [Arabidopsis lyrata subsp 0.993 0.996 0.787 1e-136
21537370287 putative prolyl 4-hydroxylase, alpha sub 0.993 0.996 0.787 1e-135
224085946288 predicted protein [Populus trichocarpa] 0.996 0.996 0.780 1e-134
255539064289 prolyl 4-hydroxylase alpha subunit, puta 0.993 0.989 0.797 1e-127
356517655290 PREDICTED: prolyl 4-hydroxylase subunit 0.993 0.986 0.744 1e-124
225459748288 PREDICTED: prolyl 4-hydroxylase subunit 0.996 0.996 0.799 1e-122
357483925289 Prolyl 4-hydroxylase alpha-2 subunit [Me 0.996 0.993 0.706 1e-120
363806698289 uncharacterized protein LOC100806046 [Gl 0.993 0.989 0.704 1e-119
356540840290 PREDICTED: prolyl 4-hydroxylase subunit 0.996 0.989 0.704 1e-118
>gi|18394842|ref|NP_564109.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|9558598|gb|AAF88161.1|AC026234_12 Contains similarity to a prolyl 4-hydroxylase alpha subunit protein from Gallus gallus gi|212530 [Arabidopsis thaliana] gi|90962978|gb|ABE02413.1| At1g20270 [Arabidopsis thaliana] gi|332191835|gb|AEE29956.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 227/287 (79%), Positives = 260/287 (90%), Gaps = 1/287 (0%)

Query: 1   MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRR 60
           M KLRHSR QA+KWSTL LVL MLFMLTIVLLMLLA G+F +PI +D+S P DL+ FRR 
Sbjct: 1   MAKLRHSRFQARKWSTLMLVLFMLFMLTIVLLMLLAFGVFSLPINNDESSPIDLSYFRRA 60

Query: 61  AFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTG 120
           A E+   + + +G+QWTE+++WEPRAFVYHNFLSK ECEYLI LAKP+MVKSTVVDS+TG
Sbjct: 61  ATERSEGLGK-RGDQWTEVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETG 119

Query: 121 QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYD 180
           +SKDSRVRTSSGTFL+RG+D+II+ IEKRIAD+TFIP +HGEG+QVLHYE GQKY+ HYD
Sbjct: 120 KSKDSRVRTSSGTFLRRGRDKIIKTIEKRIADYTFIPADHGEGLQVLHYEAGQKYEPHYD 179

Query: 181 YFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVK 240
           YF+DEFNTKNGGQRMAT+LMYLSDVEEGGETVFPAAN NF+SV W+NELSECGK+GLSVK
Sbjct: 180 YFVDEFNTKNGGQRMATMLMYLSDVEEGGETVFPAANMNFSSVPWYNELSECGKKGLSVK 239

Query: 241 PKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYK 287
           P+ GDALLFWSMRPDATLDP+SLHGGCPVIRGNKWS+TKWMHV EYK
Sbjct: 240 PRMGDALLFWSMRPDATLDPTSLHGGCPVIRGNKWSSTKWMHVGEYK 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297850430|ref|XP_002893096.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297338938|gb|EFH69355.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224085946|ref|XP_002307750.1| predicted protein [Populus trichocarpa] gi|222857199|gb|EEE94746.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539064|ref|XP_002510597.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223551298|gb|EEF52784.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356517655|ref|XP_003527502.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Glycine max] Back     alignment and taxonomy information
>gi|225459748|ref|XP_002285898.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2 [Vitis vinifera] gi|302141716|emb|CBI18919.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|363806698|ref|NP_001242522.1| uncharacterized protein LOC100806046 [Glycine max] gi|255647110|gb|ACU24023.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356540840|ref|XP_003538892.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.993 0.996 0.742 2e-118
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.993 0.989 0.666 6.7e-104
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.864 0.855 0.705 3.1e-99
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.861 0.855 0.671 6.1e-94
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.718 0.694 0.574 3.3e-63
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.711 0.685 0.559 8.1e-60
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.715 0.715 0.533 6.6e-58
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.677 0.689 0.550 1.7e-52
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.694 0.694 0.420 9.3e-43
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.704 0.740 0.396 1.6e-38
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 213/287 (74%), Positives = 246/287 (85%)

Query:     1 MVKLRHSRLQAKKWSTLTLVLSXXXXXXXXXXXXXXXGIFYIPIGDDDSPPNDLTSFRRR 60
             M KLRHSR QA+KWSTL LVL                G+F +PI +D+S P DL+ FRR 
Sbjct:     1 MAKLRHSRFQARKWSTLMLVLFMLFMLTIVLLMLLAFGVFSLPINNDESSPIDLSYFRRA 60

Query:    61 AFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTG 120
             A E+   + + +G+QWTE+++WEPRAFVYHNFLSK ECEYLI LAKP+MVKSTVVDS+TG
Sbjct:    61 ATERSEGLGK-RGDQWTEVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETG 119

Query:   121 QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYD 180
             +SKDSRVRTSSGTFL+RG+D+II+ IEKRIAD+TFIP +HGEG+QVLHYE GQKY+ HYD
Sbjct:   120 KSKDSRVRTSSGTFLRRGRDKIIKTIEKRIADYTFIPADHGEGLQVLHYEAGQKYEPHYD 179

Query:   181 YFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVK 240
             YF+DEFNTKNGGQRMAT+LMYLSDVEEGGETVFPAAN NF+SV W+NELSECGK+GLSVK
Sbjct:   180 YFVDEFNTKNGGQRMATMLMYLSDVEEGGETVFPAANMNFSSVPWYNELSECGKKGLSVK 239

Query:   241 PKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYK 287
             P+ GDALLFWSMRPDATLDP+SLHGGCPVIRGNKWS+TKWMHV EYK
Sbjct:   240 PRMGDALLFWSMRPDATLDPTSLHGGCPVIRGNKWSSTKWMHVGEYK 286
GO:0005506 "iron ion binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G20270
oxidoreductase, 2OG-Fe(II) oxygenase family protein; oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN- oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN- protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Prolyl 4-hydroxylase, alpha subunit (Int [...] (287 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G38710
proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative; proline [...] (476 aa)
     •  0.899
P5CR
P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase; Delta 1-pyr [...] (276 aa)
     •  0.899
ERD5
ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5); proline dehydrogenase; Encodes a proline oxidase that [...] (499 aa)
     •  0.899
PIP
PIP; aminopeptidase; encodes proline iminopeptidase ; Specifically catalyzes the removal of N-t [...] (380 aa)
     •  0.899
AT2G03870
small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; small nucle [...] (99 aa)
      • 0.657
AT1G48750
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; protease inhibitor [...] (94 aa)
      • 0.407

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 1e-81
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 2e-47
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 5e-09
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 3e-06
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  248 bits (634), Expect = 1e-81
 Identities = 114/213 (53%), Positives = 148/213 (69%), Gaps = 11/213 (5%)

Query: 80  VAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ 139
           V+W+PR FVY  FLS AEC++L+ LAK  + +S V D+K+G+S  S VRTSSG FL + Q
Sbjct: 50  VSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ 109

Query: 140 DRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLL 199
           D ++  IE+RIA +TF+P E+ E IQ+L YE GQKY+ H+DYF D+ N   GG R AT+L
Sbjct: 110 DPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVL 169

Query: 200 MYLSDVEEGGETVFPAANANFTSVRWWNE-----LSECGKQGLSVKPKRGDALLFWSMRP 254
           MYLS V++GGETVFP A        W N+      SEC  +GL+VKP +GDA+LF+S+  
Sbjct: 170 MYLSTVDKGGETVFPNAEG------WENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHI 223

Query: 255 DATLDPSSLHGGCPVIRGNKWSATKWMHVHEYK 287
           D   DP SLHG CPVI G KWSA KW+H+  Y+
Sbjct: 224 DGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE 256

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.96
PHA02813 354 hypothetical protein; Provisional 99.76
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.74
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.68
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.65
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 99.06
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.64
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.57
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.57
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.39
PHA02866 333 Hypothetical protein; Provisional 98.13
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 98.07
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.77
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.73
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.71
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.68
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.35
TIGR02466201 conserved hypothetical protein. This family consis 97.3
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 96.99
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 96.75
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.45
PHA02923 315 hypothetical protein; Provisional 94.85
COG3826236 Uncharacterized protein conserved in bacteria [Fun 93.85
KOG3200224 consensus Uncharacterized conserved protein [Funct 93.29
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 91.56
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.71
PLN02485329 oxidoreductase 89.0
PLN02904357 oxidoreductase 88.52
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 87.7
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 87.44
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 86.94
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 86.64
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 86.6
PLN02254358 gibberellin 3-beta-dioxygenase 86.0
PLN02216357 protein SRG1 85.85
PLN02276361 gibberellin 20-oxidase 85.6
PLN02947374 oxidoreductase 85.23
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 85.01
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 85.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 84.93
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 84.81
COG5285299 Protein involved in biosynthesis of mitomycin anti 84.38
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.97
PLN02997325 flavonol synthase 83.67
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 82.92
PTZ00273320 oxidase reductase; Provisional 82.39
PLN02156335 gibberellin 2-beta-dioxygenase 81.47
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-59  Score=435.42  Aligned_cols=216  Identities=52%  Similarity=0.926  Sum_probs=198.4

Q ss_pred             ccCceeEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCcCccceeeeCCCCCccccceeeecceeecCCccHHHHHHHHHH
Q 023053           71 EKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRI  150 (288)
Q Consensus        71 ~~~~~~ve~ls~~P~i~vi~nfLs~eEC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~d~v~~~I~~ri  150 (288)
                      .-.+.|+|+||++|+||+|+||||++||++||+++++++.+++++++.+|+...+++|+|+++|++..+++++++|++||
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri  120 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI  120 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999888777777888999999999987799999999999


Q ss_pred             HHhhCCCCCCCCceEEeecCCCCccccCccccccccccCCCCceEEEEEEeecCCCCCceeeecCCCccccccccccccc
Q 023053          151 ADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELS  230 (288)
Q Consensus       151 ~~~~~lp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~~~  230 (288)
                      ++++++|.++.|.+||+||++||+|++|+|++.+..+...+++|++|+|+||||+++||||+||.+.. ....+.++.++
T Consensus       121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~-~~~~~~~~~~s  199 (310)
T PLN00052        121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG-WENQPKDDTFS  199 (310)
T ss_pred             HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc-ccccccccchh
Confidence            99999999999999999999999999999998765444568999999999999999999999998743 22334567789


Q ss_pred             ccCCCCeEEecCCCcEEEEecCCCCCCCCCCCccccCCCccceEEEEEEeeeecccc
Q 023053          231 ECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYK  287 (288)
Q Consensus       231 ~c~~~~~~V~Pk~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~~~  287 (288)
                      +|++.+++|+|++|+||+|+|+++||++|+.++|+||||++|+||++|+|||.++|.
T Consensus       200 ~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~  256 (310)
T PLN00052        200 ECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE  256 (310)
T ss_pred             hhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence            999999999999999999999999999999999999999999999999999999884

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 7e-69
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 7e-69
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 8e-69
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 3e-66
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 1e-37
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure 
Iteration: 1

 Score =  257 bits (656), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 120/215 (55%), Positives = 163/215 (75%), Gaps = 9/215 (4%)
Query: 74  EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
           E+W  E+V  +W PRAF+  NFLS  EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 8   EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
           +GT+  +G+D +I  IEKR+A  T IP+E+ EG+QVLHY  GQKY+ HYDYF D  N   
Sbjct: 68  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 127
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
           ++GGQR+ T+LMYL+ VEEGGETV P A    T   W    SEC K+GL+VKP +GDAL+
Sbjct: 128 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 183
Query: 249 FWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHV 283
           F+S++PD + DP+SLHG CP ++G+KWSATKW+HV
Sbjct: 184 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 1e-103
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 6e-91
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 1e-11
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  299 bits (767), Expect = e-103
 Identities = 117/221 (52%), Positives = 161/221 (72%), Gaps = 6/221 (2%)

Query: 70  EEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRT 129
           +E+       ++W PRAF+  NFLS  EC+Y+++ A+P MVKS+VVD+++G+S DS +RT
Sbjct: 6   KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRT 65

Query: 130 SSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT- 188
           S+GT+  +G+D +I  IEKR+A  T IP+E+ EG+QVLHY  GQKY+ HYDYF D  N  
Sbjct: 66  STGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAG 125

Query: 189 -KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDAL 247
            ++GGQR+ T+LMYL+ VEEGGETV P A    T   W    SEC K+GL+VKP +GDAL
Sbjct: 126 PEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDAL 181

Query: 248 LFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYKA 288
           +F+S++PD + DP+SLHG CP ++G+KWSATKW+HV     
Sbjct: 182 MFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIGG 222
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.92
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.13
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.67
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.96
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.91
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.84
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 97.42
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.32
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 97.27
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 97.0
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 96.93
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 96.88
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 96.58
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 93.47
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 88.06
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 82.01
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 81.99
3pl0_A254 Uncharacterized protein; quorum sensing, biofilm f 80.42
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1.2e-54  Score=385.92  Aligned_cols=213  Identities=54%  Similarity=0.990  Sum_probs=195.5

Q ss_pred             ccCceeEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCcCccceeeeCCCCCccccceeeecceeecCCccHHHHHHHHHH
Q 023053           71 EKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRI  150 (288)
Q Consensus        71 ~~~~~~ve~ls~~P~i~vi~nfLs~eEC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~d~v~~~I~~ri  150 (288)
                      ...+.|+|+||++|+|++|+||||++||++||+++++.+.+++++++.+|....+++|+|.++|++..+++++++|++||
T Consensus         7 ~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri   86 (224)
T 2jig_A            7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRV   86 (224)
T ss_dssp             CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHH
T ss_pred             cccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHH
Confidence            57889999999999999999999999999999999998999999988777777888999999999976789999999999


Q ss_pred             HHhhCCCCCCCCceEEeecCCCCccccCcccccccccc--CCCCceEEEEEEeecCCCCCceeeecCCCccccccccccc
Q 023053          151 ADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT--KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNE  228 (288)
Q Consensus       151 ~~~~~lp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~  228 (288)
                      .+++++|...+|++||+||++||+|++|+|++.+..+.  ..+++|++|+++||||+++||||+||....    .+.|+.
T Consensus        87 ~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~----~~~~~~  162 (224)
T 2jig_A           87 AQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQ----KVTGDG  162 (224)
T ss_dssp             HHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSS----CCCSTT
T ss_pred             HHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCccc----cccccc
Confidence            99999999899999999999999999999998653221  346899999999999999999999998642    256788


Q ss_pred             ccccCCCCeEEecCCCcEEEEecCCCCCCCCCCCccccCCCccceEEEEEEeeeecccc
Q 023053          229 LSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHVHEYK  287 (288)
Q Consensus       229 ~~~c~~~~~~V~Pk~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~~~  287 (288)
                      +++|.+.+++|+|++|+||+|+|+.+||++|++++|+||||++|+||++++|++.++|.
T Consensus       163 ~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~~  221 (224)
T 2jig_A          163 WSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG  221 (224)
T ss_dssp             SCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCCC
T ss_pred             ccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCcC
Confidence            89999889999999999999999999999999999999999999999999999999985
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 98.05
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.78
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 97.12
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 96.97
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 89.59
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 82.15
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 81.91
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=9.7e-05  Score=63.83  Aligned_cols=185  Identities=14%  Similarity=0.165  Sum_probs=89.3

Q ss_pred             EEEEcCCCCHHHHHHHHHHhcCcCcc----c--eeeeCCC-CC-ccccceeeecceeecCCccHHH-----HHHHHHHHH
Q 023053           86 AFVYHNFLSKAECEYLIDLAKPYMVK----S--TVVDSKT-GQ-SKDSRVRTSSGTFLKRGQDRII-----RGIEKRIAD  152 (288)
Q Consensus        86 i~vi~nfLs~eEC~~Li~~a~~~l~~----s--~v~~~~~-g~-~~~~~~R~s~~~~l~~~~d~v~-----~~I~~ri~~  152 (288)
                      .++++|+|+++||+.|.+..+.....    .  ....... .. ......+.-....--...+.+.     ..|.+.+..
T Consensus        24 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  103 (296)
T d2a1xa1          24 FLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVEC  103 (296)
T ss_dssp             EEEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE-----EECCEEECCTTSHHHHHHHHCHHHHHHHHH
T ss_pred             EEEccCcCCHHHHHHHHHHHHHHHhhccccccccccccccccccccCccccchhhhhhhhhchhHHhhcccHHHHHHHHH
Confidence            56899999999999998887542111    0  0000000 00 0000000000000000112222     234455556


Q ss_pred             hhCCCCCCCCceEEeec-CCCC---ccccCccccccccccCCCCceEEEEEEeecCCC-CCceeee-cCCCccc---ccc
Q 023053          153 FTFIPMEHGEGIQVLHY-EVGQ---KYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE-EGGETVF-PAANANF---TSV  223 (288)
Q Consensus       153 ~~~lp~~~~E~lqv~rY-~~G~---~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~---s~~  223 (288)
                      +.|-........-+.+. ..|.   ...||.|.....   .......+|+.++|+|+. +.|.+.| |......   ...
T Consensus       104 llg~~~~~~~~~~~~k~p~~~~~~~~~~wHqD~~~~~---~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~~~  180 (296)
T d2a1xa1         104 FTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDY  180 (296)
T ss_dssp             HHCSSEEEEEEEEEEECCC--------CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC
T ss_pred             hhccccceecccccccccccccccccCCcccCccccc---cCCccccceeeEeeeeccccccccceeccccccccccccc
Confidence            66633211111222332 2232   246899975321   123456899999999985 5567766 4432100   000


Q ss_pred             ccc--------cccccc--CCCCeEEecCCCcEEEEecCCCCCCCCCCCccccCCCcc-ceEEEEEEeee
Q 023053          224 RWW--------NELSEC--GKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGGCPVIR-GNKWSATKWMH  282 (288)
Q Consensus       224 ~~~--------~~~~~c--~~~~~~V~Pk~G~allF~n~~~~g~~D~~~lH~g~PV~~-G~K~i~~~W~~  282 (288)
                      ..+        ....+-  ....+.+.-++|++++|.         +.++|++.|-.+ ..|+++..-+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~---------~~l~Hgs~~N~S~~~R~~l~~~y~  241 (296)
T d2a1xa1         181 PKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFH---------PLLIHGSGQNKTQGFRKAISCHFA  241 (296)
T ss_dssp             -----------CCCCC-CCCSCCEEECBCTTCEEEEC---------TTCCEEECCBCSSSCEEEEEEEEE
T ss_pred             ccccCCcccccccccchhhccceEEeeecCCcEEEEC---------CCeeecCCCCCCcCceEEEEEEEE
Confidence            000        000000  123456778999999995         699999998654 57888766543
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure