Citrus Sinensis ID: 023060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MTWNFMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGLP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccEEEEEEEEccHHHHcccccccEEccccccccccEEEEEEEEEEccccccccccccccEEEccEEEEEEEcccccccccccEEEEEEccccEEEEEcccccccccccccEEEEEEccccEEEcccccccEEEEccccEEEEEEEcccccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccEEEEEEEEEccHHHHcccEEEEEEcccccEEcccEEEEEEEEEcccccccccccccccEEEcEEEEEEEEccccccccccccEEEEEccccEEEEEcccccccccccccEEEEEEcccEEEEEccccccEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEcccccEcccccc
Coil and Loop (DISEMBL)
MTWNFMCLILSLFLSQFVHslnnnttdsldTCLQDFAFRTlirhrphtgnlynamlpanlsgMSVSIVRLRSRRlwnrganfcnfhipsrtipvphVKRLALVYHdfgnwsshyytvpgysmitpvigfkvfdasnmmsRSVKKlslntmgkpivirfsnstlsdgmvSKARCAifssngtlhlgeitlanvcfsqdqghfsivvplkrkrgqwKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWvgrskmpsatvtrtqptledgglp
Flexible Loop (DISEMBL)
MTWNFMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGANFcnfhipsrtipVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKlslntmgkpiVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVmekqadedlvldtiwvgrskmpsatvtrtqptledgglp
Low Complexity Region (SEG)
MTWNFMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMsvsivrlrsrrlWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAigivlgiggfiligyvviASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGLP
Disordered region (IsUnstruct)
**WNFMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVG**********************
Disordered Region (DISOPRED)
*TWNFMCLILSLFLS*************LDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSN********SKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKA**********DEDLVLDTIWVGRSKMPSATVTRT*PT*******
Disordered Region (DISEMBL)
MTWNFMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMP*****************
Disordered Region (DISPRO)
*TWNFMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLED****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTWNFMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
224058415	295	predicted protein [Populus trichocarpa]	0.996	0.972	0.633	1e-105
255537669	734	atpob1, putative [Ricinus communis] gi|2	0.947	0.371	0.641	1e-105
224072081	284	predicted protein [Populus trichocarpa]	0.923	0.936	0.633	2e-95
356527664	300	PREDICTED: uncharacterized protein LOC10	0.996	0.956	0.570	3e-95
356511462	297	PREDICTED: uncharacterized protein LOC10	0.996	0.966	0.563	8e-93
449464100	290	PREDICTED: uncharacterized protein LOC10	1.0	0.993	0.544	1e-87
359473888	722	PREDICTED: BTB/POZ domain-containing pro	0.902	0.360	0.565	2e-81
255541778	275	conserved hypothetical protein [Ricinus	0.934	0.978	0.427	9e-63
224127836	290	predicted protein [Populus trichocarpa]	0.958	0.951	0.400	3e-56
79483704	313	uncharacterized protein [Arabidopsis tha	0.895	0.824	0.415	1e-53

>gi|224058415|ref|XP_002299498.1| predicted protein [Populus trichocarpa] gi|222846756|gb|EEE84303.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/295 (63%), Positives = 228/295 (77%), Gaps = 8/295 (2%)

Query: 1   MTWNFMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANL 60
           M+ N + L+LSL+ S  VHS +N  TD+LD  LQD AF++L+RHRPHTG LY A+LPANL
Sbjct: 1   MSLNIIWLLLSLYFSPSVHSSDNYNTDTLDAFLQDSAFKSLVRHRPHTGALYKALLPANL 60

Query: 61  SGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGY 120
           SG+ VSIVR+RSR LWN GANF NF IPSRT+ +PHV+RLA+VY D GNWSS+YY+VPGY
Sbjct: 61  SGVQVSIVRIRSRTLWNIGANFSNFQIPSRTMTLPHVRRLAIVYQDLGNWSSYYYSVPGY 120

Query: 121 SMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSK-ARCAIFSSN 179
           SMITPV+GF VF+ASN  ++ + K+SLNT GK IVIRF+NST+++ M+S  A+C  FS++
Sbjct: 121 SMITPVVGFMVFNASNARAKRIGKVSLNTSGKAIVIRFANSTITESMISSGAKCVTFSAS 180

Query: 180 GTLHLGEITLANVCFSQDQGHFSIVVPL-------KRKRGQWKLWAIGIVLGIGGFILIG 232
           GT HLGEI L N C SQD GHFSIVVP        +RK+  W LW IG  LG      +G
Sbjct: 181 GTFHLGEINLLNECHSQDHGHFSIVVPQEERSGRDRRKQSLWYLWVIGFALGFSVVAFLG 240

Query: 233 YVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGL 287
           Y  + S+K+LK KKIQVME+QADEDLVL+TIWVG SKMPSATVTRTQP LE+GG 
Sbjct: 241 YFGMVSLKLLKTKKIQVMERQADEDLVLETIWVGTSKMPSATVTRTQPNLENGGF 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537669|ref|XP_002509901.1| atpob1, putative [Ricinus communis] gi|223549800|gb|EEF51288.1| atpob1, putative [Ricinus communis]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/279 (64%), Positives = 222/279 (79%), Gaps = 6/279 (2%)

Query: 16  QFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRL 75
           ++  S++N TT+SLD  LQD AF+TL+RHRP TG LY A+LPANLSGM VSIVRLRSRRL
Sbjct: 456 EYYLSVHNYTTNSLDAFLQDSAFKTLVRHRPQTGALYTALLPANLSGMEVSIVRLRSRRL 515

Query: 76  WNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDAS 135
           WN GANF NFHIPSRT   PHVKRLA+VY D GNWSSHYY+VPGYSM+T V+GF VF+AS
Sbjct: 516 WNIGANFSNFHIPSRTKTTPHVKRLAVVYQDLGNWSSHYYSVPGYSMLTSVVGFMVFNAS 575

Query: 136 NMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFS 195
           N  ++S+K++SL+T  + I+I F+N T  + ++S+A+C  FS NGT HL EI   NVC+S
Sbjct: 576 NARAKSIKRISLDTNRRNIIIHFANLTFHERLISEAKCVAFSENGTFHLSEINQLNVCYS 635

Query: 196 QDQGHFSIVVPLKRK-RGQ-----WKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQV 249
           QDQGHFS+VVP+KRK  GQ     W  W IG ++G GG  L+GY V+ S+K+L+ +KIQV
Sbjct: 636 QDQGHFSVVVPMKRKGEGQRKHSLWYAWIIGFIVGSGGLALVGYFVLVSMKLLRTQKIQV 695

Query: 250 MEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGLP 288
           ME+QADED+VL+TIWVG SKMPSAT+TRTQPT+E GG P
Sbjct: 696 MERQADEDMVLETIWVGNSKMPSATLTRTQPTIESGGFP 734

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072081|ref|XP_002303621.1| predicted protein [Populus trichocarpa] gi|222841053|gb|EEE78600.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/273 (63%), Positives = 203/273 (74%), Gaps = 7/273 (2%)

Query: 22  NNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGAN 81
           +N TTD+LDT LQD AF++L+R  PHTG LY  ++P NLSGM VSIVR+RSR LW  GAN
Sbjct: 9   DNFTTDTLDTFLQDSAFKSLVRQWPHTGALYKGLIPVNLSGMEVSIVRIRSRTLWKIGAN 68

Query: 82  FCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRS 141
           F NF IP RT+  PHVKRLA+VY D GNWSS+YY+ PGYSMITPV+GF VF+ASN  + S
Sbjct: 69  FSNFQIPPRTMTSPHVKRLAIVYQDLGNWSSYYYSAPGYSMITPVVGFMVFNASNARTES 128

Query: 142 VKKLSLNTMGKPIVIRFSNSTLSDGM-VSKARCAIFSSNGTLHLGEITLANVCFSQDQGH 200
            +K+SL+T GK IVIRF+NST+ + M V  A+C  FS++G  HL EI   N C SQDQGH
Sbjct: 129 TEKISLDTRGKAIVIRFANSTIPESMIVFGAKCVTFSASGKFHLSEINQLNECHSQDQGH 188

Query: 201 FSIVVPL------KRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQA 254
           FSIVVPL      KRKR  W LW I  VLG      +GY  I S+K+LK K IQ ME+QA
Sbjct: 189 FSIVVPLQRKGRDKRKRSLWYLWVIEFVLGFSVVAFLGYFGIVSLKLLKTKTIQAMERQA 248

Query: 255 DEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGL 287
           DEDLVLDTIWVG SKMPSATVTRTQP L++GG 
Sbjct: 249 DEDLVLDTIWVGTSKMPSATVTRTQPNLDNGGF 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527664|ref|XP_003532428.1| PREDICTED: uncharacterized protein LOC100775907 [Glycine max]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 169/296 (57%), Positives = 222/296 (75%), Gaps = 9/296 (3%)

Query: 1   MTWNFMCLILSLFLS---QFVHSLNNNT--TDSLDTCLQDFAFRTLIRHRPHTGNLYNAM 55
           M W+F+ ++L         F HSL+N    ++SL++ +QDFAFR+L++HRP TG LY+A+
Sbjct: 5   MNWDFIWVLLLTLCCCCCSFGHSLDNTAAASESLNSLVQDFAFRSLVKHRPQTGALYDAL 64

Query: 56  LPANLSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYY 115
           LP NLSGM VS+VRLRSRRLWN+GANF  F IP RT+ +PHV+RLA+VY + GNWSSHYY
Sbjct: 65  LPRNLSGMDVSVVRLRSRRLWNKGANFSYFRIPPRTMSIPHVRRLAIVYQNLGNWSSHYY 124

Query: 116 TVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTL----SDGMVSKA 171
            +PGYS I+ V+GF VFDASN+   S + L+LNTMG+PI I+F N T     S+ + ++ 
Sbjct: 125 NLPGYSFISSVVGFMVFDASNVTDTSERNLTLNTMGQPISIQFPNITFMARGSNSINTRV 184

Query: 172 RCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILI 231
           RC  F+ NGT  L E++   VC S+DQGHFS+V+PL+++RG W LW IG V+G  G I++
Sbjct: 185 RCVAFNDNGTFQLTEMSSPGVCNSRDQGHFSVVLPLEKRRGTWYLWVIGFVVGFFGLIIV 244

Query: 232 GYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGL 287
           GYVV +S ++LK K+IQVMEKQA ED VL++ WVG SKMPSATVTRTQP LE+G L
Sbjct: 245 GYVVFSSRRLLKTKRIQVMEKQASEDQVLESRWVGNSKMPSATVTRTQPVLENGVL 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511462|ref|XP_003524445.1| PREDICTED: uncharacterized protein LOC100815056 [Glycine max]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 165/293 (56%), Positives = 221/293 (75%), Gaps = 6/293 (2%)

Query: 1   MTWNFM-CLILSLFL-SQFVHSLNNNTT--DSLDTCLQDFAFRTLIRHRPHTGNLYNAML 56
           + W+F+  L+L+L      VHSL+N     +SL++ +QDFAFR+L++HRP TG LY+A+L
Sbjct: 5   IDWDFIWVLLLTLCCCGSLVHSLDNTAAACESLNSLVQDFAFRSLVKHRPQTGALYDALL 64

Query: 57  PANLSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYT 116
           P NLSGM VS+VRLRSRRLWN+GANF  F IP RT+ +PHV+RLA+VY + GNWSSHY+ 
Sbjct: 65  PRNLSGMDVSVVRLRSRRLWNKGANFSYFQIPPRTMSIPHVRRLAIVYQNLGNWSSHYFN 124

Query: 117 VPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNST-LSDGMV-SKARCA 174
           +PGYS+I+ V+GF VFDASN+   S + ++LNTMG+PI ++F N T +  G + ++ RC 
Sbjct: 125 LPGYSLISSVVGFMVFDASNVTDTSERNITLNTMGQPISVQFPNVTFMGRGSINTRVRCV 184

Query: 175 IFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYV 234
            F++NGT  L E++   VC S+DQGHFS+V+PL++KRG W LW IG V+G  G I+ GY 
Sbjct: 185 AFNANGTFQLTEMSSPGVCNSRDQGHFSVVLPLEKKRGTWYLWVIGFVVGFFGLIIAGYA 244

Query: 235 VIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGL 287
           V +S+++LK K+IQ MEKQA ED VL++ WVG SKMPSA VTRTQP LE G L
Sbjct: 245 VFSSMRLLKTKRIQAMEKQAGEDQVLESRWVGNSKMPSAAVTRTQPVLESGVL 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464100|ref|XP_004149767.1| PREDICTED: uncharacterized protein LOC101207860 [Cucumis sativus] gi|449522895|ref|XP_004168461.1| PREDICTED: uncharacterized protein LOC101229777 [Cucumis sativus]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/290 (54%), Positives = 204/290 (70%), Gaps = 2/290 (0%)

Query: 1   MTWNFM-CLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPAN 59
           M  NFM  L+ S+    FVHSL  N + S+D  LQ+ AF+TL+R RP+TG LY A LPAN
Sbjct: 1   MNKNFMIVLVFSVTFCPFVHSLQGNDSISMDAFLQETAFKTLVRRRPYTGALYRASLPAN 60

Query: 60  LSGMSVSIVRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPG 119
           LSGM VS+VRLRSRRLW++GANF +F IPS T+PVPHV+RL +VY DFGNWSS Y+ +PG
Sbjct: 61  LSGMEVSVVRLRSRRLWDKGANFSHFGIPSNTLPVPHVRRLVIVYQDFGNWSSSYFKIPG 120

Query: 120 YSMITPVIGFKVFDA-SNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSS 178
           +S++TPV+GF VF+A SN  ++++ KLS+ T+   I I F N  L  G  S   CA F  
Sbjct: 121 FSLLTPVVGFMVFNATSNTEAKNITKLSITTLENRIEIHFPNLKLPLGKSSNTWCAEFDE 180

Query: 179 NGTLHLGEITLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIAS 238
           +G  HL  +    VC+S+ QG+F++V  LKRK+  W LW IG VLG+G  ++ GY  + +
Sbjct: 181 DGMFHLIPMGSLEVCYSRKQGYFAVVSKLKRKKKTWYLWVIGFVLGVGVMVVAGYAAMVT 240

Query: 239 VKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGLP 288
           ++ LK KKIQ+MEKQAD DLVL + WVG SKMPSA VTRT P LE+   P
Sbjct: 241 IRALKTKKIQIMEKQADGDLVLQSRWVGNSKMPSAAVTRTMPVLENSSFP 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473888|ref|XP_002276076.2| PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/260 (56%), Positives = 195/260 (75%)

Query: 27  DSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGANFCNFH 86
           DSLD  +Q+FA RTL  HRPHTG LY A+LPANLSGM VS+V+LRSR+LW+RGA F NF 
Sbjct: 461 DSLDAFVQEFALRTLDHHRPHTGPLYKAILPANLSGMEVSVVQLRSRQLWSRGAKFSNFR 520

Query: 87  IPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLS 146
           IPSRT+PVPHVKRL L+Y D GNWSS+YY VPGY++++ V+G   +DASN+ +  + +LS
Sbjct: 521 IPSRTMPVPHVKRLVLIYQDLGNWSSYYYPVPGYTLVSSVVGLIAYDASNLDANRIVQLS 580

Query: 147 LNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVP 206
           LNTMGKPI + F       G  S+ARCA   +NGT++L +++L +VC+S++QGHFSIV+P
Sbjct: 581 LNTMGKPISVHFGKLLFPRGRKSEARCAALCANGTVYLSDMSLPSVCYSREQGHFSIVIP 640

Query: 207 LKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVG 266
           +K+K+     W  G  +G  G +++  V +  +++ K K+I  MEKQADE +VL  IW+G
Sbjct: 641 VKKKQKWKSSWVGGFAVGFVGLVVMSSVGMVVLRLSKQKRIAEMEKQADESVVLGMIWIG 700

Query: 267 RSKMPSATVTRTQPTLEDGG 286
            SKMPSATVTRTQP LE+GG
Sbjct: 701 GSKMPSATVTRTQPVLENGG 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541778|ref|XP_002511953.1| conserved hypothetical protein [Ricinus communis] gi|223549133|gb|EEF50622.1| conserved hypothetical protein [Ricinus communis]

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/274 (42%), Positives = 168/274 (61%), Gaps = 5/274 (1%)

Query: 18  VHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWN 77
           VH  ++N  +SLD  + ++A   L+R   HTG L N  LP+N SG+  S+ R RS  LW 
Sbjct: 4   VHGSSSNDPESLDASIYNYAVEALLRQ--HTGKLLNVSLPSNFSGIKASVFRTRSGSLWQ 61

Query: 78  RGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNM 137
           RGANF + +IPS  IP P VKRLA+VY + GN SSHYY VPGYS++ PV+GF  +DASN+
Sbjct: 62  RGANFSSVYIPSGVIPFPFVKRLAIVYQNLGNRSSHYYKVPGYSLVAPVVGFMAYDASNL 121

Query: 138 MSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQD 197
                + L L+ MG  IV++FS     DG     +C      GT+    +T  N C +Q 
Sbjct: 122 SLLGREMLQLSIMGDSIVVKFSKIVRKDGNPEDLKCVKIGEGGTVQFRNVTEGNTCLAQS 181

Query: 198 QGHFSIVVP---LKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQA 254
            GHFS+VVP     + +  W+ W IG  + + G IL+  ++  + K+L++K+I  ME ++
Sbjct: 182 DGHFSLVVPSLSESKVKKTWEWWVIGFGILLFGIILVVVILTTACKMLRSKRIAEMEGES 241

Query: 255 DEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGLP 288
           ++ +  D  W+G+SKMPSA++ RTQP LE G +P
Sbjct: 242 EKGVAFDMKWIGKSKMPSASMVRTQPALEHGDIP 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127836|ref|XP_002320176.1| predicted protein [Populus trichocarpa] gi|222860949|gb|EEE98491.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/282 (40%), Positives = 163/282 (57%), Gaps = 6/282 (2%)

Query: 10  LSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVR 69
           L L L   VH L +   +SLD  +  +A +   + R  TG      LPAN SGM VS+VR
Sbjct: 12  LFLLLISPVHGLTSYDPESLDALIHQYAMKAQAKKR--TGTSLKVPLPANFSGMEVSVVR 69

Query: 70  LRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGF 129
           LRS   W RGANF +F IP R  P P VKRL+LVY + GNWS+ YY VP YS++ PV+GF
Sbjct: 70  LRSGHFWERGANFTSFFIPPRITPFPFVKRLSLVYQNLGNWSTLYYRVPDYSLVAPVVGF 129

Query: 130 KVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITL 189
             +DASN+ +   + L  N +G PI I+F N  ++ G     +C     +G +H   IT 
Sbjct: 130 MAYDASNLSALGNEALKFNVLGDPISIKFPN-LMTKGDPKLLKCVELGPDGLVHFRNITN 188

Query: 190 ANVCFSQDQGHFSIVVP---LKRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKK 246
            N C +Q  GHFS+ V    + +    W  W IG    I   +L+G +   + K++++++
Sbjct: 189 ENTCMTQGDGHFSVAVKNSDVDKNNRVWIWWVIGFGAAILALVLLGVIGFTTFKLVRSER 248

Query: 247 IQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDGGLP 288
            + ME +++  + LDT  +GRSK+PS+++ RTQPTLE   +P
Sbjct: 249 FREMEAESENGVALDTTSIGRSKIPSSSMVRTQPTLEQDYVP 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79483704|ref|NP_194103.2| uncharacterized protein [Arabidopsis thaliana] gi|55740651|gb|AAV63918.1| hypothetical protein At4g23720 [Arabidopsis thaliana] gi|332659398|gb|AEE84798.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 165/279 (59%), Gaps = 21/279 (7%)

Query: 21  LNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGA 80
           LN     SL   L++FA +TL     HTG LY A+LP NLSG+ VS+VRL  + LWN GA
Sbjct: 37  LNVTLPHSLSQSLENFALKTLTTQH-HTGALYRAILPENLSGIEVSVVRLTGKSLWNSGA 95

Query: 81  NFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSR 140
            F N  IP R++ VP  +R+ +VY + GNWS+H+YTVPGY +IT V+GFKV D S+    
Sbjct: 96  KFSNVLIPERSVSVPPARRVVIVYQNLGNWSNHWYTVPGYRLITSVLGFKVLDVSDQ--D 153

Query: 141 SVKKLSLNTMGKPIVIRFSN--STLSDGMVSKARCAIFSS----NGTLHLGEITLANVCF 194
           +VK++ L  M  P+ + F +      + M+S+ RC  F +        H+  + +  VC+
Sbjct: 154 NVKEIILK-MKNPVEVSFRDLPKERDEEMLSRVRCVSFKAQTKDEEATHISRMVIPGVCY 212

Query: 195 SQDQGHFSIVVPLKRKRGQ-------WKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKI 247
               G +S++ PL+  +         W LW +G VLG G   L+G++    ++V +AKKI
Sbjct: 213 GSSHGDYSVIEPLENDKKNVESWSTWWWLWIVGFVLGFG---LLGFLCTMGIRVSRAKKI 269

Query: 248 QV-MEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDG 285
           QV ME+ A++  V ++ W G SKMPSA VTRT P LE G
Sbjct: 270 QVMMERDANDGEVFESRWFGGSKMPSAAVTRTLPELESG 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2128509	313	AT4G23720 "AT4G23720" [Arabido	0.937	0.862	0.364	2.2e-43
TAIR|locus:2077803	316	AT3G08600 "AT3G08600" [Arabido	0.673	0.613	0.377	8.1e-35
TAIR|locus:2125003	306	AT4G01140 "AT4G01140" [Arabido	0.927	0.872	0.335	1.3e-34
TAIR|locus:2127248	343	AT4G22900 "AT4G22900" [Arabido	0.708	0.594	0.274	1.1e-19
TAIR|locus:2118026	327	AT4G11950 "AT4G11950" [Arabido	0.684	0.602	0.302	3.5e-16
TAIR|locus:4515102709	343	AT1G62981 "AT1G62981" [Arabido	0.548	0.460	0.271	2.9e-06

TAIR|locus:2128509 AT4G23720 "AT4G23720" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 104/285 (36%), Positives = 148/285 (51%)

Query:    12 LFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMXXXXXXXX 71
             + L+     LN     SL   L++FA +TL     HTG LY A+LP NLSG+        
Sbjct:    28 IHLNSTTSILNVTLPHSLSQSLENFALKTLTTQH-HTGALYRAILPENLSGIEVSVVRLT 86

Query:    72 XXXXWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKV 131
                 WN GA F N  IP R++ VP  +R+ +VY + GNWS+H+YTVPGY +IT V+GFKV
Sbjct:    87 GKSLWNSGAKFSNVLIPERSVSVPPARRVVIVYQNLGNWSNHWYTVPGYRLITSVLGFKV 146

Query:   132 FDASNMMSRSVKKLSLNTMGKPIVIRFSN--STLSDGMVSKARCAIFSSNG----TLHLG 185
              D S+    +VK++ L  M  P+ + F +      + M+S+ RC  F +        H+ 
Sbjct:   147 LDVSDQ--DNVKEIILK-MKNPVEVSFRDLPKERDEEMLSRVRCVSFKAQTKDEEATHIS 203

Query:   186 EITLANVCFSQDQGHFSIVVPL---KRKRGQWKLWAXXXXXXXXXXXXXXXXX-XASVKV 241
              + +  VC+    G +S++ PL   K+    W  W                      ++V
Sbjct:   204 RMVIPGVCYGSSHGDYSVIEPLENDKKNVESWSTWWWLWIVGFVLGFGLLGFLCTMGIRV 263

Query:   242 LKAKKIQVM-EKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDG 285
              +AKKIQVM E+ A++  V ++ W G SKMPSA VTRT P LE G
Sbjct:   264 SRAKKIQVMMERDANDGEVFESRWFGGSKMPSAAVTRTLPELESG 308

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2077803 AT3G08600 "AT3G08600" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 79/209 (37%), Positives = 110/209 (52%)

Query:     8 LILSLFLSQFVHSL-------NNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAM-LPAN 59
             L+L LFLS  +  L       N +++ SLD  LQD++FR L+R  P TG LY A  +P+N
Sbjct:     9 LLLLLFLSLRLQKLSAQSSSPNASSSSSLDALLQDYSFRALLR--PRTGILYEATTVPSN 66

Query:    60 LSGMXXXXXXXXXXXXWNRGAN-FCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVP 118
             L+G+              RG   F  F IPS  I  P+V RL LVY +  N+S  YY + 
Sbjct:    67 LTGIKLAAMRLRSGSFRKRGVTPFNEFSIPSGVIVKPYVTRLVLVYQNLANFSHLYYPLS 126

Query:   119 GYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSN-STLSDGMVSKARCAIFS 177
             GY  + PV+G   +DA N+ + ++ +L L     PI I FS+   +  G  S A+C  F 
Sbjct:   127 GYDYVAPVLGLLAYDAKNLSALNLPQLDLRVSNDPIRIDFSDLERIPQG--SSAKCVRFD 184

Query:   178 SNGTLHLGE-ITLANVCFSQDQGHFSIVV 205
             S G     + I   N C ++ QGHFS+VV
Sbjct:   185 SKGEASFSDSIQPGNTCETEHQGHFSVVV 213

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

TAIR|locus:2125003 AT4G01140 "AT4G01140" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 97/289 (33%), Positives = 151/289 (52%)

Query:     7 CLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMXXX 66
             C+I +L     VH +NN  +D LD  ++ +A R   R   HTG+LY+  LP+NLS +   
Sbjct:    16 CIISNL--QTMVHCINN-ISD-LDDLIRSYAARATTRR--HTGSLYDVSLPSNLSDIKAS 69

Query:    67 XXXXXXXXXWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFG-NWSSHYYTVP-GYSMIT 124
                      W +G NF    IP      P+ KR+A V+  FG N SS Y+ +   YS ++
Sbjct:    70 VVTVRNSIFWRKGTNFSGVLIPPMVKTSPYAKRIAFVFESFGDNSSSVYFRLADNYSFVS 129

Query:   125 PVIGFKVFDASNMMSRSVKKLSLNTM-GKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLH 183
             PVIGF  +DA+N  +  +KKL+L+    KPI+I+F      D   SK +C +F  NG L 
Sbjct:   130 PVIGFTGYDATN--TNDLKKLNLSIKRDKPILIKFDPHASRDR--SKVKCIVFGDNGLLL 185

Query:   184 LGEITLANV-CFSQDQ-GHFSIVV----PLKRKRGQWKL---WAXXXXXXXXXXXXXXXX 234
                 T+ N  C + +  GH+++VV     +K K     +   W                 
Sbjct:   186 NISNTIRNYECATTNSHGHYALVVLNQEKVKPKHEPVLVRRNWWWIVLTGIGVSVIVVVV 245

Query:   235 XXASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLE 283
                SVK+++ K+++ ME+++++   +  +W+GRS+MP+AT+ RTQP LE
Sbjct:   246 IIVSVKLVRKKRLRDMERESEKSETIGNVWIGRSRMPAATMVRTQPCLE 294

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127248 AT4G22900 "AT4G22900" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 61/222 (27%), Positives = 106/222 (47%)

Query:     7 CLILSLFLSQFVHSLNN--NTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMX 64
             C+I+ + L  F  S +    +T  LD  ++D+  R   +   +TG      LP+N SG+ 
Sbjct:     7 CIIIMILLLSFHQSKSQLIQSTHLLDLMIRDYTIRNF-KLNFNTGVTQKIYLPSNFSGID 65

Query:    65 XXXXXXXXXXXWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFG-NWSSHY---YTVPGY 120
                           GA    FHI S     P  +R+ L+  +FG NWSS Y   Y + GY
Sbjct:    66 IDTVKLRCGSLRRYGAKIGEFHIGSGLTVEPCPERVMLIRQNFGSNWSSIYSTGYNLSGY 125

Query:   121 S--MITPVIGFKVFDAS-NMMSRSVKKLSL-NTMGKPIVIRF-----SNSTLSDGMV--S 169
             +  +++PV+G   ++A+ + ++R+  ++++  T   PI+I F     +N+T  +     S
Sbjct:   126 NYKLVSPVLGLLAYNANPDGVARNPYEVNVVGTDQNPILIDFLINKATNNTSPNPTKKNS 185

Query:   170 KARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKR 211
                CA F+SN      E     VC    QGH+++V+  + ++
Sbjct:   186 SVLCACFTSNSNTTFSEQVSPYVCKGTRQGHYALVMKTEAQK 227

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118026 AT4G11950 "AT4G11950" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 66/218 (30%), Positives = 100/218 (45%)

Query:     5 FMCLILSLFLSQFVHSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMX 64
             F+ +IL LF      S    +   LD  ++D+  R    H   TG +    LP+N S + 
Sbjct:     6 FIFIIL-LFHVHKSKSQTIESAHFLDLMIRDYTIRNFNIHFK-TGAIQKVHLPSNFSSID 63

Query:    65 XXXXXXXXXXXWNRGANFCNFHI-PSRTIPVPHVKRLALVYHDFG-NWSSHYYT----VP 118
                           GA    FH+ P  T+  P V+R+ LV  + G NWSS+ Y+    + 
Sbjct:    64 IATAKFRCGSLRRHGARIGEFHLGPGLTVE-PCVERVILVRQNLGFNWSSYIYSTGYNLT 122

Query:   119 GYS--MITPVIGFKVFDASNMMSRSVKKLSLNTMG---KPIVIRFSNSTLSDGMV----- 168
             GY   +++PV+G   ++ SN    +V    +N MG    PI+I+F +S  S         
Sbjct:   123 GYKYRLVSPVLGLLAYN-SNPDGVAVNPYEVNVMGTEQNPILIKFLSSEASGSPKPNTKK 181

Query:   169 -SKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVV 205
              S   CA F+SNG +   E   A VC    QGH+++V+
Sbjct:   182 NSSVLCACFTSNGNITFREQVSAYVCLGTRQGHYALVI 219

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515102709 AT1G62981 "AT1G62981" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 47/173 (27%), Positives = 73/173 (42%)

Query:    48 TGNLYNAMLPANLSGMXXXXXXXXXXXXWNRGANFCNFHIPSRTIPVPHVKRLALVYHDF 107
             TG +    LP++ SG+               GA    F+I    I  P  +RL +V    
Sbjct:    67 TGVIRRVHLPSDYSGIKLDAVRFRCGSLRRYGAKIEEFNIGVGAILEPCGERLLVVRQSL 126

Query:   108 GN-WSSHYYT---VPGYSMITPVIGFKVFDASN--MMSRSVKK-----LSLNTMGKPIVI 156
             G+ WS  YY    + GY +++PV+G   ++A N  ++  +V       L L     P  +
Sbjct:   127 GSKWSDIYYKNYDLSGYRLVSPVLGLLAYNALNDVVLGNNVSSSYQISLLLARTKDPSNV 186

Query:   157 RFSN----STLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVV 205
              F N    S +    ++K  CA F  +G + L       VC  +  GHF +VV
Sbjct:   187 DFGNVSGPSVVERTFLNKPMCATFELDGKVTLAAEVKPFVCAVKTNGHFGLVV 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      288       258   0.00087  114 3  11 22  0.40    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  216 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.94u 0.09s 19.03t   Elapsed:  00:00:03
  Total cpu time:  18.94u 0.09s 19.03t   Elapsed:  00:00:03
  Start:  Sat May 11 09:04:29 2013   End:  Sat May 11 09:04:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I000852 hypothetical protein (295 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam06697	278	pfam06697, DUF1191, Protein of unknown function (D	3e-81

>gnl|CDD|219141 pfam06697, DUF1191, Protein of unknown function (DUF1191)

 Score =  246 bits (629), Expect = 3e-81
 Identities = 104/278 (37%), Positives = 144/278 (51%), Gaps = 20/278 (7%)

Query: 20  SLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRG 79
            LN  +   LD  L+D+AFR    HR  TG LY   LP+NLSG++ S VRLRS  L   G
Sbjct: 4   ELNIQSASLLDAMLRDYAFRAFTLHR-RTGVLYRVSLPSNLSGIAASAVRLRSGSLRRYG 62

Query: 80  AN-FCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMM 138
              F  F IP   +  P+ +R+ LV  + GNWSS YY + GY +++PV+G   +DA+N  
Sbjct: 63  VRKFGEFAIPPGLVVEPYAERVVLVRQNLGNWSSVYYPLSGYRLVSPVLGLLAYDAAN-D 121

Query: 139 SRSVKKLSLNTMGKPIVIRFSNSTLSDGM-VSKARCAIFSSNG-TLHLGEITLANVCFSQ 196
                 L+L   G PI + FS+++ +     S  RC  F  NG   H   +   NVC + 
Sbjct: 122 GGLKNPLNLVAKGNPIRVDFSDASPAPQPGASAVRCVTFDLNGVATHFSAMVPPNVCATT 181

Query: 197 DQGHFSIVVPL--------------KRKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVL 242
            QGH+S+VV                K     WK    G+V G+G   L+  +V   V+  
Sbjct: 182 RQGHYSLVVNSEASKPGPEPGGVSTKGSSWWWK-VVGGVVGGVGLLGLLAVLVARLVRYK 240

Query: 243 KAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQP 280
           + K+ + ME++A+E   L    VGRS+ PSAT TRTQP
Sbjct: 241 RKKRREEMERRAEEGEALRVSMVGRSRAPSATGTRTQP 278

This family contains hypothetical plant proteins of unknown function. Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	100.0
PF15102	146	TMEM154: TMEM154 protein family	84.52
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	84.08
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	83.7
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.03
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	81.72
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	81.58

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=100.00  E-value=7.1e-113  Score=792.72  Aligned_cols=261  Identities=48%  Similarity=0.798  Sum_probs=245.2

Q ss_pred             cccCCCChhhHHHHHHHHHHHhhhcCCCCCCceEeeccCCCCCCceEEEEEEecccccccCC-ccceeecCCCccccCcc
Q 023060           19 HSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGA-NFCNFHIPSRTIPVPHV   97 (288)
Q Consensus        19 ~~~~~~~~~~LD~~lqd~A~k~l~~~r~~TG~~y~~~LP~NlSGi~vsavRlRsgSLrr~G~-~~~eF~IP~gv~~~P~v   97 (288)
                      ++++.+++++||++|||||||+|+ +|||||++|+++||+||||||||+||||||||||||+ +|+||+||||++++||+
T Consensus         3 ~~~~~~~~~~LD~~lqd~A~kal~-~~p~TG~~y~~~LP~nlsGi~vsavRlRsgSLrr~G~~~~~eF~IP~gv~~~P~v   81 (278)
T PF06697_consen    3 QSQQIYSARSLDALLQDYAFKALV-LRPRTGILYNVSLPSNLSGIEVSAVRLRSGSLRRRGVNNFSEFHIPPGVVVQPYV   81 (278)
T ss_pred             cccccCCHHHHHHHHHHHHHHHhc-cccccCceeeeecCCcccceEEEEEEeecCchhhhcccccceeecCCcceecCcc
Confidence            355667999999999999999997 4677999999999999999999999999999999999 99999999999999999


Q ss_pred             eEEEEEEeecCCcccccccCCCceeeceeeEEEeeccCCcccCCcceeEEEecCCCeEEEcCCCccCCCCC-CcceeEEE
Q 023060           98 KRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMV-SKARCAIF  176 (288)
Q Consensus        98 ~Rl~lVyqnlGNwSs~yY~~pgY~lvsPVlGllaYdasnl~~~~~~~l~l~~~g~PI~I~F~~~~~~~~~~-~~~~Cv~F  176 (288)
                      |||+||||||||||++||++|||+|+|||||||||||+|+++++++||+|+++|+||+|+|+|++..++++ +.+|||+|
T Consensus        82 ~Rl~lVyqnlGNwSs~yy~lpGY~lvsPVlGllaYdasn~~~~~~~el~l~a~~~PI~V~F~~~~~~~~~~~~~~~Cv~F  161 (278)
T PF06697_consen   82 ERLVLVYQNLGNWSSHYYPLPGYSLVSPVLGLLAYDASNLSATSLPELSLRASGKPILVDFSNVSPAPQPGMSVPKCVTF  161 (278)
T ss_pred             eEEEEEEeccCccccceecCCCceEEeeeeeeEEecccccccCCcceeeeeccCCcEEEEecCCccCCCcccccceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998866 88899999


Q ss_pred             ccCCceEEcccccCceeEeecCCeeEEEEeCC-------------CCCCceEEEEeehhhHHHHHHHHHHHHHHhhhhhh
Q 023060          177 SSNGTLHLGEITLANVCFSQDQGHFSIVVPLK-------------RKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLK  243 (288)
Q Consensus       177 ~~~G~~~~~~~~~~nvC~~~~~GHfslVV~~~-------------~~~~~wk~wvig~v~G~~glvlL~~lv~~~vr~~r  243 (288)
                      |+||+++|+|++++|||++++||||||||+.+             +++.+||+|++|+++|+++|+||++++++++|+||
T Consensus       162 ~~~G~~~~~~~~~~nvC~~~~~GHfslVV~~~~~~~~~~~~~~~~~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~kr  241 (278)
T PF06697_consen  162 DLDGSVTFSNMTSPNVCSTSRQGHFSLVVPSPAPPPAPPPPGAPPRKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKR  241 (278)
T ss_pred             cCCCcEEEeccCCCceeeeecCceEEEEEcCCCCCCCCCCcccccCCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhH
Confidence            99999999999999999999999999999721             23333333455889999999999999999999999


Q ss_pred             HHHHHHHHHhcccccccceEeecCccCCccccccccC
Q 023060          244 AKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQP  280 (288)
Q Consensus       244 ~~ki~eMEr~A~~gE~L~~~~VG~sraPsA~~tRT~P  280 (288)
                      |||||||||+||+||+|||+||||||||+|++|||||
T Consensus       242 k~k~~eMEr~A~~gE~L~~~~VG~sraPsA~~tRT~P  278 (278)
T PF06697_consen  242 KKKIEEMERRAEEGEALQMSWVGGSRAPSATVTRTQP  278 (278)
T ss_pred             HHHHHHHHHhhccCceeeeEEEccccCccccccccCC
Confidence            9999999999999999999999999999999999999

>PF15102 TMEM154: TMEM154 protein family

Probab=84.52  E-value=0.45  Score=41.82  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=38.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcccccccceEeecCccCCccccccccCcccCC
Q 023060          221 IVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDG  285 (288)
Q Consensus       221 ~v~G~~glvlL~~lv~~~vr~~r~~ki~eMEr~A~~gE~L~~~~VG~sraPsA~~tRT~P~LE~~  285 (288)
                      .++..++|+||-+++++++.+.||||..+=+-+...-+++|.-=.|+-+.|       +|++|+|
T Consensus        61 IlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gsq~~~qt~e~~~Env~-------~PiFEed  118 (146)
T PF15102_consen   61 ILIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSSQGSQSALQTYELGSENVK-------VPIFEED  118 (146)
T ss_pred             EeHHHHHHHHHHHHHHHheeEEeecccCCCCccccccccccccccCccccc-------ccccccC
Confidence            444555566666666777666666666555566677788887777777665       3577776

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=84.08  E-value=0.32  Score=43.08  Aligned_cols=19  Identities=53%  Similarity=0.933  Sum_probs=13.8

Q ss_pred             EEEEeehhhHHHHHHHHHH
Q 023060          215 KLWAIGIVLGIGGFILIGY  233 (288)
Q Consensus       215 k~wvig~v~G~~glvlL~~  233 (288)
                      |-.|||+|+|+++.+||+.
T Consensus        48 knIVIGvVVGVGg~ill~i   66 (154)
T PF04478_consen   48 KNIVIGVVVGVGGPILLGI   66 (154)
T ss_pred             ccEEEEEEecccHHHHHHH
Confidence            3457899998877777664

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=83.70  E-value=1.2  Score=37.27  Aligned_cols=19  Identities=11%  Similarity=-0.120  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHhhhhhhH
Q 023060          226 GGFILIGYVVIASVKVLKA  244 (288)
Q Consensus       226 ~glvlL~~lv~~~vr~~r~  244 (288)
                      ++++||.++++++.+.||+
T Consensus         9 i~~i~l~~~~~~~~~rRR~   27 (130)
T PF12273_consen    9 IVAILLFLFLFYCHNRRRR   27 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3333344444444433333

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.03  E-value=0.68  Score=39.42  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=10.0

Q ss_pred             ehhhHHHHHHHHHHHHHHhhhhhhH
Q 023060          220 GIVLGIGGFILIGYVVIASVKVLKA  244 (288)
Q Consensus       220 g~v~G~~glvlL~~lv~~~vr~~r~  244 (288)
                      |+++|++|++|  ++.+++.|.+||
T Consensus        72 gv~aGvIg~Il--li~y~irR~~Kk   94 (122)
T PF01102_consen   72 GVMAGVIGIIL--LISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHS--
T ss_pred             HHHHHHHHHHH--HHHHHHHHHhcc
Confidence            55556655543  333344444444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=81.72  E-value=1.6  Score=44.10  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=17.6

Q ss_pred             cCcceEEEEEEeecCCcccccccCCCceeeceeeEEEeecc
Q 023060           94 VPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDA  134 (288)
Q Consensus        94 ~P~v~Rl~lVyqnlGNwSs~yY~~pgY~lvsPVlGllaYda  134 (288)
                      .|...++-+--+|   .-+|-|....=-.+++-|=+-++|.
T Consensus       141 ~p~~~~~~~~~~~---~~s~vf~~Gdtf~~~v~l~~~~~d~  178 (439)
T PF02480_consen  141 VPHRHGATFHLKN---YHSHVFSPGDTFHLSVHLQSEAHDD  178 (439)
T ss_dssp             -----SEEEEEE-----SEEE--TT--EE---EEEEEESSS
T ss_pred             CCcccccEEEEec---cceEEecCCCcEEEeEEEEeccCCC
Confidence            4455666665555   4777787766677888888888885

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=81.58  E-value=1.5  Score=42.06  Aligned_cols=44  Identities=23%  Similarity=0.525  Sum_probs=31.7

Q ss_pred             ceEEEEeehhhH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHhccc
Q 023060          213 QWKLWAIGIVLG-IGGFILIGYVVIASVKVLKAKKIQVMEKQADE  256 (288)
Q Consensus       213 ~wk~wvig~v~G-~~glvlL~~lv~~~vr~~r~~ki~eMEr~A~~  256 (288)
                      .+|+|.-=.++| ++|+++|+++.+.+....|-||.++||.---+
T Consensus       207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr~  251 (278)
T PF06697_consen  207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMERR  251 (278)
T ss_pred             CCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence            455555445667 78888888888888888888888888764333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
4dlo_A	382	Brain-specific angiogenesis inhibitor 3; GAIN doma	90.94
3g5b_A	405	Netrin receptor UNC5B; ZU5, death domain, UPA, apo	85.31
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	81.64

>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS motif, autoproteolytic fold, extra signaling protein; HET: NAG FUL; 2.30A {Homo sapiens}

Probab=90.94  E-value=3.2  Score=39.16  Aligned_cols=103  Identities=14%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             eeecCCCccccCc--------ceEE-EEEEeecCCcccccccC--CCceeeceeeEEEeeccCCcccCCcceeEEEecCC
Q 023060           84 NFHIPSRTIPVPH--------VKRL-ALVYHDFGNWSSHYYTV--PGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGK  152 (288)
Q Consensus        84 eF~IP~gv~~~P~--------v~Rl-~lVyqnlGNwSs~yY~~--pgY~lvsPVlGllaYdasnl~~~~~~~l~l~~~g~  152 (288)
                      ...||......+-        +..+ .+.|.+||+    +.+.  ....+-++|++.-..+..+       .     ..+
T Consensus       244 ~V~ip~~~~~~~~~~~~~~~~~~v~~~v~y~~lg~----~L~~~~~~~~lns~Vis~sv~~~~~-------~-----l~~  307 (382)
T 4dlo_A          244 RVVIPKSIFTPVSSKELDESSVFVLGAVLYKNLDL----ILPTLRNYTVINSKIIVVTIRPEPK-------T-----TDS  307 (382)
T ss_dssp             EEEECGGGGSCCCC--CCTTCEEEEEEEEESSGGG----TSCCCSTTEEECSCEEEEEEESCCC-------C-----TTC
T ss_pred             eEEcCHHHhcccccccCCCCceEEEEEEEECChHH----hcCCCCCCeeeeceEEEEEcCCCCc-------c-----cCC
Confidence            3667765553221        2222 346999986    2333  2367889999998875321       1     236


Q ss_pred             CeEEEcCCCccCCCCCCcceeEEEccCCc-------------eEEcccccCceeEeecCCeeEEEEe
Q 023060          153 PIVIRFSNSTLSDGMVSKARCAIFSSNGT-------------LHLGEITLANVCFSQDQGHFSIVVP  206 (288)
Q Consensus       153 PI~I~F~~~~~~~~~~~~~~Cv~F~~~G~-------------~~~~~~~~~nvC~~~~~GHfslVV~  206 (288)
                      ||.|.|.+...   +...+.||.+|.+..             +.-++ ..-.+|.-....+|+|...
T Consensus       308 pV~i~f~h~~~---~~~~~~Cv~W~~~~~~~~~g~Ws~~GC~~~~~~-~~~t~C~C~Hlt~FavLm~  370 (382)
T 4dlo_A          308 FLEIELAHLAN---GTLNPYCVLWDDSKTNESLGTWSTQGCKTVLTD-ASHTKCLCDRLSTFAILAQ  370 (382)
T ss_dssp             CEEEEEECSCS---SCEEEEEEEEECC---CTTCEEECTTEEEEEEE-TTEEEEEESSCSEEEEEEE
T ss_pred             CEEEEEEeccC---CCCCceEeeeCCcCCCCCCCCccccccEEEEeC-CCEEEEECCCCchHHhhcc
Confidence            99999999753   345679999997641             11111 1234899889999999875

>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}

Probab=85.31  E-value=5.5  Score=38.60  Aligned_cols=118  Identities=16%  Similarity=0.164  Sum_probs=60.5

Q ss_pred             ecccccccCCccceeecCCCccccCcceEEEEEE-eecCCcccccccC-CCceeeceeeEEEeeccCCcccCCcceeEEE
Q 023060           71 RSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVY-HDFGNWSSHYYTV-PGYSMITPVIGFKVFDASNMMSRSVKKLSLN  148 (288)
Q Consensus        71 RsgSLrr~G~~~~eF~IP~gv~~~P~v~Rl~lVy-qnlGNwSs~yY~~-pgY~lvsPVlGllaYdasnl~~~~~~~l~l~  148 (288)
                      |.|.|+-..... ...||+|.++++-...+-|+= ++.    +.--++ .|.+++|||+=.-           +..+.  
T Consensus        12 ~GG~L~lp~tGV-sLlIP~GAi~~g~~~eiyl~v~~~~----~~~p~l~~~etllSPvV~cG-----------P~g~~--   73 (405)
T 3g5b_A           12 LGGRLTIPGTGV-SLLVPNGAIPQGKFYDLYLRINKTE----STLPLSEGSQTVLSPSVTCG-----------PTGLL--   73 (405)
T ss_dssp             TCEEEEETTTTE-EEEECTTSSCTTCCEEEEEEECCGG----GGGGGCSTTEEECSCCEEEE-----------CSSCC--
T ss_pred             CCCEEEecCCCe-EEEECCCcCCCCCEEEEEEEEeccc----CCCCCCCCCccccCceEEEC-----------CCCCc--
Confidence            344454433222 388999999999665554433 332    223355 4799999998321           12222  


Q ss_pred             ecCCCeEEEcCCCccCCCCCCcceeEEEccCCc----eEEccc---------ccCceeE--eecCCeeEEEEeC
Q 023060          149 TMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGT----LHLGEI---------TLANVCF--SQDQGHFSIVVPL  207 (288)
Q Consensus       149 ~~g~PI~I~F~~~~~~~~~~~~~~Cv~F~~~G~----~~~~~~---------~~~nvC~--~~~~GHfslVV~~  207 (288)
                       --+|+.+.|++-.......-....-.-|..|.    +++.+-         .....|+  +.+.|+|++|.+.
T Consensus        74 -f~~PViL~ipHcA~~~~~~W~i~l~~~~~~~~W~ev~~~geE~~~t~~y~qld~~~c~i~~~~lg~y~lvGe~  146 (405)
T 3g5b_A           74 -LCRPVVLTVPHCAEVIAGDWIFQLKTQAHQGHWEEVVTLDEETLNTPCYCQLEAKSCHILLDQLGTYVFTGES  146 (405)
T ss_dssp             -CSSCEEEEEECCBCCSSSCCEEEEEEESSTTCEEEEEETTCCCTTCSEEEEECSSEEEEEESSCEEEEEEEEC
T ss_pred             -cCCCeEEeecCCCCCCCCcCEEEEecCCCCCCccCccccCCccCCcceEEEecCCcEEEEhhcCcceEEEccc
Confidence             23677777776532221111111222222221    111111         1134454  5688999999985

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=81.64  E-value=1.1  Score=34.12  Aligned_cols=26  Identities=19%  Similarity=0.368  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHhh----hhhhHHHHHHHHHh
Q 023060          228 FILIGYVVIASV----KVLKAKKIQVMEKQ  253 (288)
Q Consensus       228 lvlL~~lv~~~v----r~~r~~ki~eMEr~  253 (288)
                      ++|+|++++++.    ....||+-+++|++
T Consensus        21 illiGllllliwk~~~~i~DrrE~~kFEkE   50 (79)
T 2knc_B           21 ILLIGLAALLIWKLLITIHDRKEFAKFEEE   50 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344454444333    33444555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00