Citrus Sinensis ID: 023071

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLFSIN
Secondary Structure (PSIPRED)
ccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHEEcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccccccHHHccccccEEEEEEccccEEccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHEEEEEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccHcEEEEcc
Coil and Loop (DISEMBL)
MVVTLQTliltprpskmlsswhrnshfrasgslrfspfvtfspgrsisrpiracrpsdqdfasskglnwakPLLKIAADNFLPLALIGGvafgfanpslgcladkyqlskfsTFAIFIVSGLtlrsgeigaaaeawpVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLAlfscmpttlssgVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIaagvgisvpTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLFSIN
Flexible Loop (DISEMBL)
mvvtlqtliltprpskmlssWHRNSHFrasgslrfspFVTFspgrsisrpiracRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLFSIN
Low Complexity Region (SEG)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSlvltlliplilgkvlRESITGECLNIFIRPQNFLFFLFSMSYVSRLFSIN
Disordered region (IsUnstruct)
******TLIL**********************LRFSPFVTF***********************KGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLF***
Disordered Region (DISOPRED)
****LQT*************************************************************WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLFSIN
Disordered Region (DISEMBL)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLFSIN
Disordered Region (DISPRO)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRAC********SSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLFSIN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLFSIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
F4IZC4	436	Probable sodium/metabolit	yes	no	0.745	0.490	0.595	3e-67
Q6ESG1	423	Probable sodium/metabolit	yes	no	0.634	0.430	0.675	6e-67
B8AJ09	423	Probable sodium/metabolit	N/A	no	0.634	0.430	0.675	6e-67
Q6DHK8	336	Sodium/bile acid cotransp	yes	no	0.592	0.505	0.311	6e-11
Q7T0V6	343	Sodium/bile acid cotransp	N/A	no	0.540	0.451	0.337	2e-10
Q52KD1	343	Sodium/bile acid cotransp	N/A	no	0.540	0.451	0.331	3e-10
Q28HF8	343	Sodium/bile acid cotransp	yes	no	0.540	0.451	0.331	4e-10
Q0GE19	358	Sodium/bile acid cotransp	yes	no	0.634	0.508	0.298	1e-09
Q5PT53	340	Sodium/bile acid cotransp	yes	no	0.634	0.535	0.287	3e-09
Q5PT50	340	Sodium/bile acid cotransp	yes	no	0.574	0.485	0.318	3e-09

>sp|F4IZC4|BASS4_ARATH Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Arabidopsis thaliana GN=BASS4 PE=3 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 179/247 (72%), Gaps = 33/247 (13%)

Query: 45  RSISRPIRACRPSDQ-------DF--------------------------ASSKGLNWAK 71
           R ISR IRAC+PSD+       DF                          AS++ L + K
Sbjct: 40  RWISRSIRACQPSDKVSGQFPFDFMYSSMLIPSSCGEWNRIHLGGDGGISASAQRLYFGK 99

Query: 72  PLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGA 131
            LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SGLTLR+  IGA
Sbjct: 100 ELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISGLTLRTEAIGA 159

Query: 132 AAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLA 191
           A + WP+G+FGL SILL TP FS+LI+ VQLQP+E VTGL +F CMPTTLSSGVALTHLA
Sbjct: 160 AVKGWPLGLFGLISILLLTPSFSRLIMLVQLQPRELVTGLGIFCCMPTTLSSGVALTHLA 219

Query: 192 GGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKV 251
           GGN+ALALA+T+ SNLLGI+ +PF +S++IA GVG+S PT QLF+SL++TLLIPLI+GKV
Sbjct: 220 GGNAALALAVTVASNLLGILTIPFWVSRYIAGGVGVSFPTDQLFRSLIVTLLIPLIIGKV 279

Query: 252 LRESITG 258
           +RES  G
Sbjct: 280 IRESFKG 286

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6ESG1|BASS4_ORYSJ Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS4 PE=3 SV=1

 Score =  254 bits (649), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 150/182 (82%)

Query: 77  AADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136
           A  NFLPLALI G+A    +P+LGCLA KY LSK+STF IF++SGLTLR+ E+GAA EAW
Sbjct: 92  ARSNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAW 151

Query: 137 PVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSA 196
           P G+FGL SILLFTP+ ++ I+Q++  P EF+TGLA+F CMPTTLSSGV LT L GGN+A
Sbjct: 152 PAGLFGLASILLFTPFLAQFIMQIKFFPHEFITGLAMFCCMPTTLSSGVTLTQLVGGNTA 211

Query: 197 LALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESI 256
           LALAMT ISNLLGIMIVP S++K+I  G G+S+PT++LFKSLV TLLIP+ILGKV RE+ 
Sbjct: 212 LALAMTAISNLLGIMIVPLSLAKYIGVGAGVSLPTEKLFKSLVTTLLIPIILGKVARETS 271

Query: 257 TG 258
            G
Sbjct: 272 KG 273

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8AJ09|BASS4_ORYSI Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. indica GN=BASS4 PE=3 SV=1

 Score =  254 bits (649), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 150/182 (82%)

Query: 77  AADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136
           A  NFLPLALI G+A    +P+LGCLA KY LSK+STF IF++SGLTLR+ E+GAA EAW
Sbjct: 92  ARSNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAW 151

Query: 137 PVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSA 196
           P G+FGL SILLFTP+ ++ I+Q++  P EF+TGLA+F CMPTTLSSGV LT L GGN+A
Sbjct: 152 PAGLFGLASILLFTPFLAQFIMQIKFFPHEFITGLAMFCCMPTTLSSGVTLTQLVGGNTA 211

Query: 197 LALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESI 256
           LALAMT ISNLLGIMIVP S++K+I  G G+S+PT++LFKSLV TLLIP+ILGKV RE+ 
Sbjct: 212 LALAMTAISNLLGIMIVPLSLAKYIGVGAGVSLPTEKLFKSLVTTLLIPIILGKVARETS 271

Query: 257 TG 258
            G
Sbjct: 272 KG 273

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6DHK8|NTCP7_DANRE Sodium/bile acid cotransporter 7 OS=Danio rerio GN=slc10a7 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 90  VAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFS 145
           + F    PS+G     L  +  ++  +   IF  SGL+L++ E+ +A     +  F    
Sbjct: 20  ITFAKLQPSVGVKGGPLHPEITITYVAVSVIFFNSGLSLKTEELASALMHVKLHFFVQTF 79

Query: 146 ILLFTPYFSKLILQV---QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMT 202
            L+F P    L+L+V       +  + GL   +CMP  +SS V LT   GGN A A+  +
Sbjct: 80  TLVFFPIAIWLLLKVLALTAINEWLLRGLQTVACMPPPVSSAVILTKAVGGNEAAAIFNS 139

Query: 203 IISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLN 262
              + LGI++ P  +  F+  G   SVP   +F  L +T+++PLI+G+V R  +  ECL+
Sbjct: 140 AFGSFLGIVVTPLLLLVFL--GSSSSVPFTSIFSQLFMTVVVPLIVGQVCRRFLR-ECLD 196

Danio rerio (taxid: 7955)

>sp|Q7T0V6|NTP7A_XENLA Sodium/bile acid cotransporter 7-A OS=Xenopus laevis GN=slc10a7-a PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 100 GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159
           G L  +  ++  +  AIF  SGL+L++ E+  A     + +F     L+F P    L LQ
Sbjct: 34  GPLKPEITITYIAVSAIFFNSGLSLKTEELTNALMHVKLHLFVQLFTLVFFPTAIWLFLQ 93

Query: 160 V-QLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFS 216
           V  L P  +  + GL   SCMP  +SS V LT   GGN A A+  +   + LGI++ P  
Sbjct: 94  VLSLTPINEWLLKGLQTVSCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLGIVVTPLL 153

Query: 217 ISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESI 256
           +      G   SVP   +F  L +T+++PLI+G+++R  I
Sbjct: 154 LLL--FLGSSSSVPFTSIFSQLFMTVVVPLIIGQIVRRYI 191

Xenopus laevis (taxid: 8355)

>sp|Q52KD1|NTP7B_XENLA Sodium/bile acid cotransporter 7-B OS=Xenopus laevis GN=slc10a7-b PE=2 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 100 GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159
           G L  +  ++  +  AIF  SGL+L++ E+  A     + +F     L+F P    + LQ
Sbjct: 34  GPLKPEITITYIAVSAIFFNSGLSLKTEELTNALMHVKLHLFVQLFTLVFFPTAIWIFLQ 93

Query: 160 V-QLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFS 216
           V  L P  +  + GL   SCMP  +SS V LT   GGN A A+  +   + LGI++ P  
Sbjct: 94  VLSLTPINEWLLKGLQTVSCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLGIVVTPLL 153

Query: 217 ISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESI 256
           +      G   SVP   +F  L +T+++PLI+G+++R  I
Sbjct: 154 LLL--FLGSSSSVPFTSIFSQLFMTVVVPLIIGQIVRRYI 191

Xenopus laevis (taxid: 8355)

>sp|Q28HF8|NTCP7_XENTR Sodium/bile acid cotransporter 7 OS=Xenopus tropicalis GN=slc10a7 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 100 GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159
           G L  +  ++  +  AIF  SGL+L++ E+  A     + +F     L+F P    + LQ
Sbjct: 34  GPLKPEITITYIAVSAIFFNSGLSLKTEELTNALMHVKLHLFVQLFTLVFFPTAIWVFLQ 93

Query: 160 V-QLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFS 216
           V  L P  +  + GL   SCMP  +SS V LT   GGN A A+  +   + LGI++ P  
Sbjct: 94  VLSLTPINEWLLKGLQTVSCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLGIVVTPLL 153

Query: 217 ISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESI 256
           +      G   SVP   +F  L +T+++PLI+G+++R  I
Sbjct: 154 LLL--FLGSSSSVPFTSIFSQLFMTVVVPLIIGQIVRRYI 191

Xenopus tropicalis (taxid: 8364)

>sp|Q0GE19|NTCP7_HUMAN Sodium/bile acid cotransporter 7 OS=Homo sapiens GN=SLC10A7 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 9/191 (4%)

Query: 73  LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
           LL+    ++  + ++  +A     PS+G     L  +  +S  +   IF  SGL+L++ E
Sbjct: 3   LLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEE 62

Query: 129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQV-QLQP--QEFVTGLALFSCMPTTLSSGV 185
           + +A     + +F     L F P    L LQ+  + P  +  + GL    CMP  +SS V
Sbjct: 63  LTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSSAV 122

Query: 186 ALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIP 245
            LT   GGN A A+  +   + LGI+I P  +      G   SVP   +F  L +T+++P
Sbjct: 123 ILTKAVGGNEAAAIFNSAFGSFLGIVITPLLLLL--FLGSSSSVPFTSIFSQLFMTVVVP 180

Query: 246 LILGKVLRESI 256
           LI+G+++R  I
Sbjct: 181 LIIGQIVRRYI 191

Homo sapiens (taxid: 9606)

>sp|Q5PT53|NTCP7_MOUSE Sodium/bile acid cotransporter 7 OS=Mus musculus GN=Slc10a7 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 9/191 (4%)

Query: 73  LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
           LL+ A   +  + ++  +      PS+G     L  +  +S  +   IF  SGL+L++ E
Sbjct: 3   LLERARKEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEE 62

Query: 129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQ---VQLQPQEFVTGLALFSCMPTTLSSGV 185
           + +A     + +F     L F P    L LQ   V    +  + GL    CMP  +SS V
Sbjct: 63  LTSALVHLRLHLFIQIFTLAFFPAAIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAV 122

Query: 186 ALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIP 245
            LT   GGN A A+  +   + LGI++ P  +   +  G   SVP   +F  L +T+++P
Sbjct: 123 ILTKAVGGNEAAAIFNSAFGSFLGIVVTP--VLLLLFLGSSSSVPFTSIFSQLFMTVVVP 180

Query: 246 LILGKVLRESI 256
           L++G+++R  I
Sbjct: 181 LVIGQIVRRYI 191

Mus musculus (taxid: 10090)

>sp|Q5PT50|NTCP7_RAT Sodium/bile acid cotransporter 7 OS=Rattus norvegicus GN=Slc10a7 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 90  VAFGFA--NPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGL 143
           VA G A   PS+G     L  +  +S  +   IF  SGL+L++ E+ +A     + +F  
Sbjct: 18  VAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEELTSALVHLKLHLFIQ 77

Query: 144 FSILLFTPYFSKLILQ---VQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA 200
              L F P    L LQ   V    +  + GL    CMP  +SS V LT   GGN A A+ 
Sbjct: 78  VFTLAFFPTTIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIF 137

Query: 201 MTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESI 256
            +   + LGI++ P  +   +  G   SVP   +F  L +T+++PL++G+++R  I
Sbjct: 138 NSAFGSFLGIVVTP--VLLLLFLGSSSSVPFTSIFSQLFMTVVVPLVIGQIVRRYI 191

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
296087978	448	unnamed protein product [Vitis vinifera]	0.919	0.589	0.683	4e-89
225464144	419	PREDICTED: sodium/bile acid cotransporte	0.888	0.608	0.685	3e-86
356534671	426	PREDICTED: sodium/bile acid cotransporte	0.916	0.617	0.575	3e-80
255568038	423	bile acid:sodium symporter, putative [Ri	0.923	0.626	0.626	1e-78
449468358	428	PREDICTED: probable sodium/metabolite co	0.815	0.546	0.646	6e-73
305682289	429	putative plastid localized membrane prot	0.679	0.454	0.753	1e-67
255565599	409	bile acid:sodium symporter, putative [Ri	0.679	0.476	0.656	1e-66
296084927	419	unnamed protein product [Vitis vinifera]	0.745	0.510	0.607	2e-66
148906788	426	unknown [Picea sitchensis]	0.780	0.525	0.592	2e-66
413946593	400	hypothetical protein ZEAMMB73_815392, pa	0.770	0.552	0.599	2e-66

>gi|296087978|emb|CBI35261.3| unnamed protein product [Vitis vinifera]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 188/275 (68%), Positives = 208/275 (75%), Gaps = 11/275 (4%)

Query: 1   MVVTLQTLILTPRPSKMLSSWH--RNSHFRASGSLRFSPFVTFSPGRSISR--PIRACRP 56
           M   +QTLIL P   K L       ++  R   S      +   P  S+S+  PI A + 
Sbjct: 1   MAAIIQTLILRPPHPKTLPHPTPITSNAIRFCISTHKCSLLLRKP-HSVSKSFPITAAQH 59

Query: 57  SDQ-DFASS-----KGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSK 110
           S Q D AS      K L WAKPLL   ADNFLPLAL+ GVA G ANP+LGCLAD+Y LSK
Sbjct: 60  SAQGDDASQAASSGKALIWAKPLLSFVADNFLPLALVSGVALGLANPTLGCLADRYSLSK 119

Query: 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTG 170
            STF IFI+SGL LRSGEIGAAAEAWPVGIFGL SILLFTP FS+LILQ QLQPQEF+TG
Sbjct: 120 VSTFGIFIISGLMLRSGEIGAAAEAWPVGIFGLGSILLFTPLFSRLILQFQLQPQEFITG 179

Query: 171 LALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVP 230
           LA+FSCMPTTLSSGVALT LAGGNSALALAMT+ISNLLGI+IVPFSISKFIA GVG+SVP
Sbjct: 180 LAIFSCMPTTLSSGVALTQLAGGNSALALAMTVISNLLGILIVPFSISKFIADGVGVSVP 239

Query: 231 TKQLFKSLVLTLLIPLILGKVLRESITGECLNIFI 265
           TKQL +SLV+TLLIPLILGKVLRES  GECL + I
Sbjct: 240 TKQLLRSLVVTLLIPLILGKVLRESFKGECLVVLI 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464144|ref|XP_002266805.1| PREDICTED: sodium/bile acid cotransporter 7-like [Vitis vinifera]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/270 (68%), Positives = 204/270 (75%), Gaps = 15/270 (5%)

Query: 1   MVVTLQTLILTPRPSKMLSSWH----RNSHFRASGSLRFSPFVTFSPGRSISR--PIRAC 54
           M   +QTLIL P   K L   H     ++  R   S      +   P  S+S+  PI A 
Sbjct: 1   MAAIIQTLILRPPHPKTLP--HPTPITSNAIRFCISTHKCSLLLRKP-HSVSKSFPITAA 57

Query: 55  RPSDQ-DFASS-----KGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQL 108
           + S Q D AS      K L WAKPLL   ADNFLPLAL+ GVA G ANP+LGCLAD+Y L
Sbjct: 58  QHSAQGDDASQAASSGKALIWAKPLLSFVADNFLPLALVSGVALGLANPTLGCLADRYSL 117

Query: 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFV 168
           SK STF IFI+SGL LRSGEIGAAAEAWPVGIFGL SILLFTP FS+LILQ QLQPQEF+
Sbjct: 118 SKVSTFGIFIISGLMLRSGEIGAAAEAWPVGIFGLGSILLFTPLFSRLILQFQLQPQEFI 177

Query: 169 TGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGIS 228
           TGLA+FSCMPTTLSSGVALT LAGGNSALALAMT+ISNLLGI+IVPFSISKFIA GVG+S
Sbjct: 178 TGLAIFSCMPTTLSSGVALTQLAGGNSALALAMTVISNLLGILIVPFSISKFIADGVGVS 237

Query: 229 VPTKQLFKSLVLTLLIPLILGKVLRESITG 258
           VPTKQL +SLV+TLLIPLILGKVLRES  G
Sbjct: 238 VPTKQLLRSLVVTLLIPLILGKVLRESFKG 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534671|ref|XP_003535876.1| PREDICTED: sodium/bile acid cotransporter 7-like [Glycine max]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/285 (57%), Positives = 202/285 (70%), Gaps = 22/285 (7%)

Query: 6   QTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRP-----IRACRPSDQ- 59
            +L LTP P+   S  HR  H  A  +L           RS++R      +RAC  S Q 
Sbjct: 25  HSLTLTPFPATASSFRHR--HLYAVKALTL---------RSVTRRLKPALVRACDRSQQM 73

Query: 60  ---DFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAI 116
                  +KGL+W +P+L  A  N LPLAL+  V  G   PS+GC+ADKY +SK   F I
Sbjct: 74  GGNGSKETKGLSWVEPILTFARRNILPLALVSAVTLGLTYPSIGCVADKYGVSKIGPFGI 133

Query: 117 FIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSC 176
           F++SGL LRS EIGAA EAWPVG+FGL SIL  TPYFS++ILQ+QLQPQEF+TGLA+F+C
Sbjct: 134 FVISGLMLRSEEIGAAVEAWPVGLFGLVSILFLTPYFSRVILQIQLQPQEFITGLAIFAC 193

Query: 177 MPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFK 236
           MPTTLSSGVALT LAGGNSALALAMT+ISN+LGI+I+P SI+KF+AAGVG+++PTKQLFK
Sbjct: 194 MPTTLSSGVALTQLAGGNSALALAMTVISNMLGILIIPLSITKFVAAGVGVTLPTKQLFK 253

Query: 237 SLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVS 281
           SLVLT+LIPLILGKVLRES  G  +  F+     LF + S  ++S
Sbjct: 254 SLVLTILIPLILGKVLRESFKG--VADFVDKNRKLFTVISALFLS 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568038|ref|XP_002524996.1| bile acid:sodium symporter, putative [Ricinus communis] gi|223535740|gb|EEF37403.1| bile acid:sodium symporter, putative [Ricinus communis]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 173/276 (62%), Positives = 205/276 (74%), Gaps = 11/276 (3%)

Query: 1   MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIR--ACRPSD 58
           M   +Q+LIL+PR  +  S   R+ +FR+      +P+ +    R +  PI+  AC+  D
Sbjct: 1   MAGIVQSLILSPRSLQPPSIQQRHPNFRSI----CNPY-SLKRTRCVPSPIKIKACQQPD 55

Query: 59  QDFASSKGLN--WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAI 116
           Q  +   GL   W++PL     +NFLP+ALIGGV  G ANPSLGCLADK  LSK STF I
Sbjct: 56  QGDSKVSGLANVWSQPLFSFVENNFLPMALIGGVVVGLANPSLGCLADKCYLSKVSTFGI 115

Query: 117 FIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSC 176
           F +SGLTLR+GEIGAA EAW VG+FGL SIL  TPYFS++ILQ+QLQPQEFVTGLALF C
Sbjct: 116 FFISGLTLRNGEIGAALEAWLVGVFGLCSILFITPYFSRIILQIQLQPQEFVTGLALFCC 175

Query: 177 MPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFK 236
           MPTTLSSGVALT LAGGNSALALAMT+ISNLLGI+I+PFSIS+FI AGVG+SVPTKQL +
Sbjct: 176 MPTTLSSGVALTQLAGGNSALALAMTVISNLLGILIIPFSISRFIGAGVGVSVPTKQLLR 235

Query: 237 SLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLF 272
           SLVLTLL+PLILGKV RES  G  L  F+     LF
Sbjct: 236 SLVLTLLVPLILGKVFRESSKG--LENFVDQNRKLF 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468358|ref|XP_004151888.1| PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic-like [Cucumis sativus] gi|449521070|ref|XP_004167554.1| PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic-like [Cucumis sativus]

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 159/246 (64%), Positives = 188/246 (76%), Gaps = 12/246 (4%)

Query: 25  SHFRASGSLRFSPFVTFSPGRSISRPIRACR-PSDQDFA-----------SSKGLNWAKP 72
           SHF ++ +L  S  +  +  R    PIRAC  P  +D             S K ++W + 
Sbjct: 31  SHFSSNVALLPSTSLALNRKRRSYCPIRACGLPDKKDDGGRINEPTSVSGSEKRVSWFET 90

Query: 73  LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAA 132
           L   A +NFLPLAL+ GVA G ANPSLGCLAD+Y LSKFSTF IF++SGLTLR+ EI A+
Sbjct: 91  LSTFANNNFLPLALVTGVAVGVANPSLGCLADRYYLSKFSTFGIFVISGLTLRTSEISAS 150

Query: 133 AEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAG 192
            EAWPV ++GL SILL TPYFS+LILQ+ LQPQEFVTGLA+FSCMPTTLSSGVALT LAG
Sbjct: 151 VEAWPVAVYGLVSILLLTPYFSRLILQIHLQPQEFVTGLAIFSCMPTTLSSGVALTQLAG 210

Query: 193 GNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVL 252
           GNSALALAMT+ISN+LGI+ +PFSISKFIAAGVGI+VPTK+L +SLVL LLIPLI GK+L
Sbjct: 211 GNSALALAMTVISNMLGILAIPFSISKFIAAGVGIAVPTKELLRSLVLILLIPLIFGKIL 270

Query: 253 RESITG 258
           RES  G
Sbjct: 271 RESFKG 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|305682289|dbj|BAJ16227.1| putative plastid localized membrane protein [Flaveria trinervia]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 147/195 (75%), Positives = 164/195 (84%)

Query: 64  SKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLT 123
           SK L +A+PLL     NFLPLALIGGV  GFANP+LGCLA  Y +SK ST  IFI+SGLT
Sbjct: 83  SKLLVYAEPLLNFIDINFLPLALIGGVTLGFANPTLGCLAHNYHVSKISTCGIFIISGLT 142

Query: 124 LRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSS 183
           LRS EIGAAAEAW VG+FGL SILLFTP+FSK+ILQ+ LQ QEFVTGLALFSCMPTTLSS
Sbjct: 143 LRSEEIGAAAEAWQVGLFGLASILLFTPFFSKIILQLHLQRQEFVTGLALFSCMPTTLSS 202

Query: 184 GVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLL 243
           GVALT LAGGN+ALALAMT++SNLLGI+IVPFS+SK +A GVG SVP  +L KSL+ TLL
Sbjct: 203 GVALTRLAGGNAALALAMTVLSNLLGILIVPFSVSKLVAGGVGASVPAGELCKSLIFTLL 262

Query: 244 IPLILGKVLRESITG 258
           IPLILGK LRES  G
Sbjct: 263 IPLILGKALRESFKG 277

Source: Flaveria trinervia

Species: Flaveria trinervia

Genus: Flaveria

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565599|ref|XP_002523789.1| bile acid:sodium symporter, putative [Ricinus communis] gi|223536877|gb|EEF38515.1| bile acid:sodium symporter, putative [Ricinus communis]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 155/195 (79%)

Query: 64  SKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLT 123
           + G N+ + L    + NFLP+ALI  VA G A+P+LGC A KY LSKF+TF IF +SGL 
Sbjct: 81  TNGSNFLQSLFDFTSSNFLPIALISAVALGMASPTLGCYAHKYSLSKFTTFGIFFISGLK 140

Query: 124 LRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSS 183
           L+  EIG  AEAWPV IFGL SILLFTP+FS LILQV+L PQEFVTGLA+F C+PTTL+S
Sbjct: 141 LKGKEIGEVAEAWPVAIFGLASILLFTPFFSYLILQVRLAPQEFVTGLAIFCCVPTTLTS 200

Query: 184 GVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLL 243
           GVALT L GGN+ALALAMT+ISNLLG++ VPF +SKF+A G G+S+PTK LF SL+ TLL
Sbjct: 201 GVALTQLVGGNTALALAMTVISNLLGVLTVPFWVSKFLADGFGVSIPTKNLFWSLIFTLL 260

Query: 244 IPLILGKVLRESITG 258
           +PL+LGKV+R S  G
Sbjct: 261 VPLVLGKVVRNSFKG 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084927|emb|CBI28336.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/224 (60%), Positives = 162/224 (72%), Gaps = 10/224 (4%)

Query: 45  RSISRPIRACRPSDQD----------FASSKGLNWAKPLLKIAADNFLPLALIGGVAFGF 94
           RS SR IRA   S Q           F S   L+  K L      NFLP+ALI GVA G 
Sbjct: 45  RSFSRTIRAVESSGQGNSDGSNHGKIFNSVNTLSLTKALSNFVVSNFLPIALISGVALGI 104

Query: 95  ANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFS 154
            NP+LGC+A +Y LS  STF IFI++GL L+ GEIGA AEAWP  +FGL SILL +P+FS
Sbjct: 105 TNPTLGCIAHRYSLSTISTFGIFIITGLKLQGGEIGAVAEAWPALVFGLVSILLLSPFFS 164

Query: 155 KLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVP 214
           K+ILQ+QL PQEFVTGLA+FSCMPTTLSSGVALT L  GN+ALALAMT++SNLLGI+IVP
Sbjct: 165 KIILQIQLAPQEFVTGLAIFSCMPTTLSSGVALTQLVCGNAALALAMTVMSNLLGILIVP 224

Query: 215 FSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITG 258
           F IS+F+A   G S+PT++L  SL+ TLL+PL+LGKVLR    G
Sbjct: 225 FWISRFLANDFGASIPTEKLLWSLIFTLLVPLVLGKVLRSCFQG 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148906788|gb|ABR16540.1| unknown [Picea sitchensis]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/228 (59%), Positives = 169/228 (74%), Gaps = 4/228 (1%)

Query: 54  CRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFST 113
           C+P  +    +K L+  KP+LK A  NFLPLALI GV  G  NP  GCLA KY LS +ST
Sbjct: 72  CQP--RHLTVAKVLDTVKPVLKFARTNFLPLALITGVTIGLVNPVPGCLAQKYSLSNWST 129

Query: 114 FAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLAL 173
           F IF+VSGLTLRSGE+ AA EAWP G FGL SILLFTP+ S+L+LQ++L PQEFVTGLA+
Sbjct: 130 FGIFLVSGLTLRSGEMSAAIEAWPAGAFGLVSILLFTPFISRLVLQLKLIPQEFVTGLAM 189

Query: 174 FSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQ 233
           F CMPTTLSSGVALT + GGNSALAL++T+ SNLLGI+ VPF +SK +A GVG+SVP  +
Sbjct: 190 FCCMPTTLSSGVALTQVVGGNSALALSLTVASNLLGIVTVPFMLSKLVAQGVGVSVPAGE 249

Query: 234 LFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVS 281
           L KSL L +L+PL+LGK +R S  G  +  F+  +  LF + +  ++S
Sbjct: 250 LLKSLTLMILVPLLLGKGIRNSFNG--VAKFVDERRELFSMINSIFLS 295

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413946593|gb|AFW79242.1| hypothetical protein ZEAMMB73_815392, partial [Zea mays]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/227 (59%), Positives = 167/227 (73%), Gaps = 6/227 (2%)

Query: 36  SPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKP----LLKIAADNFLPLALIGGVA 91
           +P V+  P R   RP+RA         S  G   A P    LL  A  NFLPLAL+ GV 
Sbjct: 33  TPVVSAVPLRL--RPLRAAAGGAASPVSGDGGKRAVPPPAALLVFARSNFLPLALVSGVI 90

Query: 92  FGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTP 151
           FG  +P+LGCLA KY LSKFSTF IFI+SGLTLR+ E+G A EAWP G++GL S+LLFTP
Sbjct: 91  FGLLDPTLGCLAHKYSLSKFSTFGIFIMSGLTLRTKELGTALEAWPAGLYGLGSVLLFTP 150

Query: 152 YFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIM 211
           + S+ I+QVQ  P+EF+TGLA+F CMPTTLSSGV LT L GGNSALALAMT+ SNLLGI+
Sbjct: 151 FLSQFIMQVQFSPREFITGLAIFCCMPTTLSSGVILTQLVGGNSALALAMTVASNLLGII 210

Query: 212 IVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITG 258
           IVP S++++I  G G+S+PT++LF+SLV  LLIPLI+GKV RE+  G
Sbjct: 211 IVPLSLARYIGTGAGVSLPTEKLFRSLVTRLLIPLIIGKVAREASKG 257

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2078471	436	AT3G56160 [Arabidopsis thalian	0.686	0.451	0.624	3.3e-65
UNIPROTKB|Q0GE19	358	SLC10A7 "Sodium/bile acid cotr	0.557	0.446	0.305	1e-08
MGI|MGI:1924025	340	Slc10a7 "solute carrier family	0.560	0.473	0.288	7.9e-08
RGD|1564388	340	Slc10a7 "solute carrier family	0.501	0.423	0.309	7.9e-08
ZFIN|ZDB-GENE-040801-5	336	zgc:92251 "zgc:92251" [Danio r	0.557	0.476	0.276	9.9e-08
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.703	0.493	0.261	8.2e-06
UNIPROTKB|Q5ZJH8	333	SLC10A7 "Sodium/bile acid cotr	0.452	0.390	0.330	3.6e-05
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.439	0.391	0.298	5.6e-05
CGD|CAL0000690	411	RCH1 [Candida albicans (taxid:	0.609	0.425	0.227	8.8e-05
UNIPROTKB|Q59UQ7	411	CaO19.13108 "Putative uncharac	0.609	0.425	0.227	8.8e-05

TAIR|locus:2078471 AT3G56160 [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 123/197 (62%), Positives = 149/197 (75%)

Query:    62 ASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSG 121
             AS++ L + K LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SG
Sbjct:    90 ASAQRLYFGKELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISG 149

Query:   122 LTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTL 181
             LTLR+  IGAA + WP+G+FGL SILL TP FS+LI+ VQLQP+E VTGL +F CMPTTL
Sbjct:   150 LTLRTEAIGAAVKGWPLGLFGLISILLLTPSFSRLIMLVQLQPRELVTGLGIFCCMPTTL 209

Query:   182 SSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSXXXX 241
             SSGVALTHLAGGN+ALALA+T+ SNLLGI+ +PF +S++IA GVG+S PT QLF+S    
Sbjct:   210 SSGVALTHLAGGNAALALAVTVASNLLGILTIPFWVSRYIAGGVGVSFPTDQLFRSLIVT 269

Query:   242 XXXXXXXXXXXRESITG 258
                        RES  G
Sbjct:   270 LLIPLIIGKVIRESFKG 286

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q0GE19 SLC10A7 "Sodium/bile acid cotransporter 7" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 52/170 (30%), Positives = 82/170 (48%)

Query:    73 LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
             L ++  D F+ + ++  +A     PS+G     L  +  +S  +   IF  SGL+L++ E
Sbjct:     4 LERMRKDWFM-VGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEE 62

Query:   129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQV-QLQP-QEFVT-GLALFSCMPTTLSSGV 185
             + +A     + +F     L F P    L LQ+  + P  E++  GL    CMP  +SS V
Sbjct:    63 LTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSSAV 122

Query:   186 ALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLF 235
              LT   GGN A A+  +   + LGI+I P  +  F+  G   SVP   +F
Sbjct:   123 ILTKAVGGNEAAAIFNSAFGSFLGIVITPLLLLLFL--GSSSSVPFTSIF 170

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924025 Slc10a7 "solute carrier family 10 (sodium/bile acid cotransporter family), member 7" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 7.9e-08, P = 7.9e-08
 Identities = 49/170 (28%), Positives = 77/170 (45%)

Query:    73 LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
             LL+ A   +  + ++  +      PS+G     L  +  +S  +   IF  SGL+L++ E
Sbjct:     3 LLERARKEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEE 62

Query:   129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQ---VQLQPQEFVTGLALFSCMPTTLSSGV 185
             + +A     + +F     L F P    L LQ   V    +  + GL    CMP  +SS V
Sbjct:    63 LTSALVHLRLHLFIQIFTLAFFPAAIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAV 122

Query:   186 ALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLF 235
              LT   GGN A A+  +   + LGI++ P  +  F+  G   SVP   +F
Sbjct:   123 ILTKAVGGNEAAAIFNSAFGSFLGIVVTPVLLLLFL--GSSSSVPFTSIF 170

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1564388 Slc10a7 "solute carrier family 10 (sodium/bile acid cotransporter family), member 7" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 7.9e-08, P = 7.9e-08
 Identities = 48/155 (30%), Positives = 75/155 (48%)

Query:    90 VAFGFAN--PSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIF-G 142
             VA G A   PS+G     L  +  +S  +   IF  SGL+L++ E+ +A     + +F  
Sbjct:    18 VAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEELTSALVHLKLHLFIQ 77

Query:   143 LFSILLF--TPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA 200
             +F++  F  T +    +L V    +  + GL    CMP  +SS V LT   GGN A A+ 
Sbjct:    78 VFTLAFFPTTIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIF 137

Query:   201 MTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLF 235
              +   + LGI++ P  +  F+  G   SVP   +F
Sbjct:   138 NSAFGSFLGIVVTPVLLLLFL--GSSSSVPFTSIF 170

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040801-5 zgc:92251 "zgc:92251" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 9.9e-08, P = 9.9e-08
 Identities = 47/170 (27%), Positives = 82/170 (48%)

Query:    73 LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
             + ++  + F+ + ++  + F    PS+G     L  +  ++  +   IF  SGL+L++ E
Sbjct:     4 IARVRKEWFI-IGIVLVITFAKLQPSVGVKGGPLHPEITITYVAVSVIFFNSGLSLKTEE 62

Query:   129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVT-GLALFSCMPTTLSSGV 185
             + +A     +  F     L+F P    L+L+V       E++  GL   +CMP  +SS V
Sbjct:    63 LASALMHVKLHFFVQTFTLVFFPIAIWLLLKVLALTAINEWLLRGLQTVACMPPPVSSAV 122

Query:   186 ALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLF 235
              LT   GGN A A+  +   + LGI++ P  +  F+  G   SVP   +F
Sbjct:   123 ILTKAVGGNEAAAIFNSAFGSFLGIVVTPLLLLVFL--GSSSSVPFTSIF 170

GO:0006810 "transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 55/210 (26%), Positives = 85/210 (40%)

Query:    16 KMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASS--KGLNWAKPL 73
             K++S  +     R   S   SP        S     +A      D   S  K L+  + +
Sbjct:    38 KLVSVSNSGISLRIQNSKPISPVFALEATSSRRVVCKAAAGVSGDLPESTPKELSQYEKI 97

Query:    74 LKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAA 133
             +++    F PL +I G   G   PSL    +   L       + +  GLTL   +     
Sbjct:    98 IELLTTLF-PLWVILGTLVGIFKPSLVTWLET-DLFTLGLGFLMLSMGLTLTFEDFRRCL 155

Query:   134 E-AWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAG 192
                W VG+ G  +  +  P    LI           TGL L SC P   +S VA T+++ 
Sbjct:   156 RNPWTVGV-GFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQASNVA-TYISK 213

Query:   193 GNSALALAMTIISNLLGIMIVPFSISKFIA 222
             GN AL++ MT  S +  I++ P  ++K +A
Sbjct:   214 GNVALSVLMTTCSTIGAIIMTPL-LTKLLA 242

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q5ZJH8 SLC10A7 "Sodium/bile acid cotransporter 7" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 45/136 (33%), Positives = 68/136 (50%)

Query:   100 GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159
             G L  +  ++  +  AIF  SGL+L++ E+ +A     + +F     L+F P    L LQ
Sbjct:    34 GPLKPEITITYIAVSAIFFNSGLSLKTEELTSALMHVKLHLFVQIFTLVFFPTAIWLFLQ 93

Query:   160 V-QLQP-QEFVT-GLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISN-LLGIMI-VP 214
             +  + P  E++  GL    CMP  +SS V LT   GGN A A+  +   + LLG    VP
Sbjct:    94 LLSITPINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLLGSSSSVP 153

Query:   215 FSISKFIAAGVGISVP 230
             F+ S F    + + VP
Sbjct:   154 FT-SIFSQLFMTVVVP 168

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 121 (47.7 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 40/134 (29%), Positives = 66/134 (49%)

Query:   108 LSKFSTFAIFIVS---GLTLRSGEIGA-AAEAWPVGIFGLFSILLFTPYFSKLILQVQLQ 163
             L+ + T  + +V    GLTL++ +    A +  PV I G+ +  +  P  + ++  V   
Sbjct:    36 LNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPV-IIGVCAQFIIMPLVAYVLAYVMNL 94

Query:   164 PQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAA 223
             P E   GL L   +P   +S V + +LA GN AL++AMT +S LL  +  P  +   + A
Sbjct:    95 PAELAAGLVLLGSVPGGTASNV-MVYLAKGNLALSIAMTSLSTLLAPIATPLIL--LLLA 151

Query:   224 GVGISVPTKQLFKS 237
             G  + V    +F S
Sbjct:   152 GQWMPVNPMSMFLS 165

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

CGD|CAL0000690 RCH1 [Candida albicans (taxid:5476)]

 Score = 121 (47.7 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 42/185 (22%), Positives = 76/185 (41%)

Query:    59 QDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSL----GCLADKYQLSKFSTF 114
             + F  SK   W   ++      +  + L   +A   + P      G +  +Y +   +  
Sbjct:     4 ETFRESKAYKWTSKVISFLIGQWFFIFLGVFIALAHSYPEFAKQGGTIRAEYSIGYGAVA 63

Query:   115 AIFIVSGLTLRSGEIGAAAEAWPVGIFGL-FSILLFTPYFSKLILQVQL----QPQEFVT 169
              IF++SGL++ + ++      W      L  S L+ +     +   ++     Q  +++ 
Sbjct:    64 VIFLISGLSMSTKQLLVNVANWRAHFTVLSMSFLVTSAIIYGIASGIKASHNGQIDDWLL 123

Query:   170 -GLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGIS 228
              GL +    PTT+SS V +T  A GN  L L    I N+LG  I P  +  ++     I 
Sbjct:   124 IGLIVTHACPTTVSSNVVMTKQAHGNDILTLCEVFIGNVLGAFITPALLQMYMRGTWEIG 183

Query:   229 VPTKQ 233
              P+ Q
Sbjct:   184 NPSHQ 188

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0070509 "calcium ion import" evidence=IMP

UNIPROTKB|Q59UQ7 CaO19.13108 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 121 (47.7 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 42/185 (22%), Positives = 76/185 (41%)

Query:    59 QDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSL----GCLADKYQLSKFSTF 114
             + F  SK   W   ++      +  + L   +A   + P      G +  +Y +   +  
Sbjct:     4 ETFRESKAYKWTSKVISFLIGQWFFIFLGVFIALAHSYPEFAKQGGTIRAEYSIGYGAVA 63

Query:   115 AIFIVSGLTLRSGEIGAAAEAWPVGIFGL-FSILLFTPYFSKLILQVQL----QPQEFVT 169
              IF++SGL++ + ++      W      L  S L+ +     +   ++     Q  +++ 
Sbjct:    64 VIFLISGLSMSTKQLLVNVANWRAHFTVLSMSFLVTSAIIYGIASGIKASHNGQIDDWLL 123

Query:   170 -GLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGIS 228
              GL +    PTT+SS V +T  A GN  L L    I N+LG  I P  +  ++     I 
Sbjct:   124 IGLIVTHACPTTVSSNVVMTKQAHGNDILTLCEVFIGNVLGAFITPALLQMYMRGTWEIG 183

Query:   229 VPTKQ 233
              P+ Q
Sbjct:   184 NPSHQ 188

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0070509 "calcium ion import" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT3G56160 bile acid-sodium symporter; bile acid-sodium symporter; FUNCTIONS IN- bile acid-sodium symporter activity; INVOLVED IN- sodium ion transport; LOCATED IN- chloroplast, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bile acid-sodium symporter (InterPro-IPR002657); Has 1967 Blast hits to 1962 proteins in 589 species- Archae - 26; Bacteria - 1122; Metazoa - 92; Fungi - 62; Plants - 76; Viruses - 0; Other Eukaryotes - 589 (source- NCBI BLink). (436 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	2e-32
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	2e-16
COG0798	342	COG0798, ACR3, Arsenite efflux pump ACR3 and relat	6e-07
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	4e-06
TIGR00841	286	TIGR00841, bass, bile acid transporter	8e-04

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score =  121 bits (306), Expect = 2e-32
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 80  NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIV---SGLTLRSGEIGAAAEAW 136
           ++  LAL+  +      P  G      +    +T+A+ ++   SGL L + E+ A    W
Sbjct: 1   DWFLLALVLAILLASLFPVPGAAGGPIRAEYVTTYAVALIFFLSGLKLSTEELLAGLRNW 60

Query: 137 PVGIFGLFSILLFTPYFSKLILQV--QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGN 194
            + +F      +  P     +  +     P E + G    + +PTT+SS VA+T  AGGN
Sbjct: 61  RLHLFVQLFTFVLFPLLGLGLSPLLPAALPPELLLGFLFLAALPTTVSSSVAMTSQAGGN 120

Query: 195 SALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLR 253
            A A+    ISNLLG+ + P  +   +  G G  V    + K L+L LL+P +LG++LR
Sbjct: 121 VAAAVCSASISNLLGVFLTPL-LVGLLLGGGGGGVDLGAVLKKLLLQLLLPFVLGQLLR 178

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 116 IFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFS 175
           I    GLTL   +  A  +   + + GL +  +  P  + L+ ++   P E   GL L  
Sbjct: 47  IMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLG 106

Query: 176 CMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLF 235
           C P  ++S  A+T+LA GN AL++  T +S LLG  + P  +      GV + V    +F
Sbjct: 107 CCPGGVAS-NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDV--GGMF 163

Query: 236 KSLVLTLLIPLILGKVLR 253
            S++L +L+P +LG++LR
Sbjct: 164 LSILLQVLLPFVLGQLLR 181

Length = 319

>gnl|CDD|223869 COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 9/178 (5%)

Query: 84  LALIGGVAFGFANPSLGCLADKYQLSKFST------FAIFIVSGLTLRSGEIGAAAEAWP 137
           LA+  G+  G   P L  L  K +    S         +     L +   E+    +   
Sbjct: 22  LAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPK 81

Query: 138 VGIFGLFSILLFTPYFSKLILQVQLQPQ-EFVTGLALFSCMPTTLSSGVALTHLAGGNSA 196
             I  LF   +  P     +    L  + E+  GL L    P   +  +  + LA G+  
Sbjct: 82  PLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCI-AMVIVWSGLAKGDRE 140

Query: 197 LALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRE 254
           L L +   ++LL I++    + KF    + ISVP   + KS++L L IPLI G + R 
Sbjct: 141 LTLVLVAFNSLLQIVLYAP-LGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRY 197

Length = 342

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 164 PQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAA 223
           P E   GL L  C P    S V  T+LA G+  L++ M  +S L   ++ P   S  ++ 
Sbjct: 56  PPELAVGLILVGCAPGGAMSNVW-TYLAKGDVELSVVMVALSTLTAPLVTPLL-SFLLSG 113

Query: 224 G---VGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRP 267
               VG +V    L KS+++ ++IPLI G + R  +  E     I P
Sbjct: 114 LLLDVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILP 160

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 9/123 (7%)

Query: 136 WPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNS 195
           W V I GL +     P    L+ +V   P E   G+ +  C P   +S V  T+L  G+ 
Sbjct: 38  WGVII-GLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNV-FTYLLKGDM 95

Query: 196 ALALAMTIISNLLGIMIVPFSISKFIAAG----VGISVPTKQLFKSLVLTLLIPLILGKV 251
           AL+++MT  S LL + ++P  +  +I A       + VP   +  SLV+ +LIP+ +G +
Sbjct: 96  ALSISMTTCSTLLALGMMPLLL--YIYAKMWVDGTLVVPYLGIGLSLVI-VLIPVSIGML 152

Query: 252 LRE 254
           ++ 
Sbjct: 153 VKH 155

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	99.97
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	99.97
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.95
TIGR00841	286	bass bile acid transporter. Functionally character	99.94
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	99.91
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.6
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	99.6
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.6
PRK09903	314	putative transporter YfdV; Provisional	99.54
COG0679	311	Predicted permeases [General function prediction o	99.43
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	99.27
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.58
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	97.37
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.32
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	97.3
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	96.99
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	96.8
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.65
PRK05326	562	potassium/proton antiporter; Reviewed	96.63
COG2855	334	Predicted membrane protein [Function unknown]	96.57
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.46
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.37
PRK10669	558	putative cation:proton antiport protein; Provision	96.33
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	96.12
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	96.03
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.81
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	95.77
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	95.75
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	95.75
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	95.68
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	95.55
PRK04288	232	antiholin-like protein LrgB; Provisional	95.55
TIGR00698	335	conserved hypothetical integral membrane protein.	95.2
PRK10711	231	hypothetical protein; Provisional	95.02
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	94.95
KOG2722	408	consensus Predicted membrane protein [Function unk	94.81
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	93.22
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	92.76
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	92.73
PRK03562	621	glutathione-regulated potassium-efflux system prot	91.8
PRK03659	601	glutathione-regulated potassium-efflux system prot	91.77
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	91.5
PLN03159	832	cation/H(+) antiporter 15; Provisional	90.29
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	89.49
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	88.47
PRK10669	558	putative cation:proton antiport protein; Provision	88.07
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	88.03
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	87.11
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	86.12
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	85.94

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=5.7e-31  Score=244.68  Aligned_cols=195  Identities=24%  Similarity=0.336  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071           82 LPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ  161 (287)
Q Consensus        82 l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~  161 (287)
                      +++++++...++...|+...+.+.+  .++.+.++||.+|++++.+|+++..+|||.++++++.||++||++++++++.+
T Consensus        15 ~~~~~v~~a~~~~~~~~~~~~~~~~--~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~   92 (319)
T COG0385          15 FLLWVVLLAAIAPIFPETFGWLGSA--IPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLF   92 (319)
T ss_pred             HHHHHHHHHHHHHhccccchhhhHH--HHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566667777888888888887764  36788899999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHHHHHHHHHH
Q 023071          162 LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLT  241 (287)
Q Consensus       162 ~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~l~~~L~~~  241 (287)
                      .+|++++.|+++++|||+|+.|++ ||+++|||++++++++.+||+++++++|+++.++.  +..+++|.+++++++++.
T Consensus        93 ~l~~~l~~Gl~ll~~~Pggv~S~~-~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~--~~~v~~~~~~m~~~i~~~  169 (319)
T COG0385          93 PLPPELAVGLLLLGCCPGGVASNA-MTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLA--GGGVPVDVGGMFLSILLQ  169 (319)
T ss_pred             CCCHHHHHhHHheeeCCCchhHHH-HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHH
Confidence            999999999999999999999985 99999999999999999999999999999999998  467899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHHHHHh
Q 023071          242 LLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRL  283 (287)
Q Consensus       242 vllPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~v~~~  283 (287)
                      +++|+++|+++|++.+++.+  ..++..++++..++..++..
T Consensus       170 vllP~~LG~~~r~~~~~~~~--~~~~~l~~vs~~~illIv~~  209 (319)
T COG0385         170 VLLPFVLGQLLRPLLPKWVE--RLKKALPPVSVLSILLIVYA  209 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHhhhcchhhHHHHHHHHHH
Confidence            99999999999999998776  56677777777777766653

>TIGR00832 acr3 arsenical-resistance protein

Probab=99.97  E-value=9.6e-30  Score=240.02  Aligned_cols=197  Identities=18%  Similarity=0.200  Sum_probs=168.6

Q ss_pred             hHHHHHHHHHHHHHhhcCccccchhhhc---h-hH--HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHH
Q 023071           80 NFLPLALIGGVAFGFANPSLGCLADKYQ---L-SK--FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYF  153 (287)
Q Consensus        80 n~l~lail~gi~lg~~~P~~~~~~~~~~---l-~~--~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Pll  153 (287)
                      ++++++++.|++.|+..|....+.+...   + .+  +.+..+||.+|++++.+|+++.+||||.+..+++.|++++|++
T Consensus        10 ~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pll   89 (328)
T TIGR00832        10 LWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFL   89 (328)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            4566888889999999999988776431   1 11  2344689999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-cCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------Cc
Q 023071          154 SKLILQVQ-LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAG------VG  226 (287)
Q Consensus       154 a~~l~~l~-~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~------~~  226 (287)
                      +|++++++ +.+++++.|+++++|||||.+|++ ||+++|||.++++++|.+||+++++++|+++.++.+..      +.
T Consensus        90 a~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v-~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~  168 (328)
T TIGR00832        90 MFLLAWLFLRDLFEYIAGLILLGLARCIAMVFV-WNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTV  168 (328)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccce
Confidence            99999975 889999999999999999999996 99999999999999999999999999999999887521      35


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhc-cccchhHHHHH
Q 023071          227 ISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIR-PQNFLFFLFSM  277 (287)
Q Consensus       227 v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~-~~~~~~s~i~~  277 (287)
                      +++|+.+++.+++.++++|+++|+++|++.+++..+++.+ |.++.++.++.
T Consensus       169 v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~  220 (328)
T TIGR00832       169 ITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL  220 (328)
T ss_pred             eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH
Confidence            7899999999999999999999999999999765222554 56555554443

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=99.97  E-value=4.9e-29  Score=233.83  Aligned_cols=193  Identities=31%  Similarity=0.541  Sum_probs=172.6

Q ss_pred             hHHHHHHHHHHHHHhhcCccccchhhhc---hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071           80 NFLPLALIGGVAFGFANPSLGCLADKYQ---LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL  156 (287)
Q Consensus        80 n~l~lail~gi~lg~~~P~~~~~~~~~~---l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~  156 (287)
                      ||++++++.++++|+.+|.++...+..+   ..++.++++||..|++++.+|+++.++|||.++.++..+|+++|+++++
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999999988544431   4566799999999999999999999999999999999999999999999


Q ss_pred             HHHHh--cCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHHH
Q 023071          157 ILQVQ--LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQL  234 (287)
Q Consensus       157 l~~l~--~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~l  234 (287)
                      +.+++  ..+++++.|+++++|+||+..|+++||+++|||.+.|+..++++|+++++++|+++.++.+ ++..++|+.++
T Consensus        81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~-~~~~~~~~~~~  159 (313)
T PF13593_consen   81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLG-GSSVSIDYASV  159 (313)
T ss_pred             HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhc-CCcCCCCHHHH
Confidence            99887  4688999999999999999999988999999999999999999999999999999999984 45788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHH
Q 023071          235 FKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMS  278 (287)
Q Consensus       235 ~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~  278 (287)
                      +.++...+++|+++|+++|++.+++     .+|+++++++++-+
T Consensus       160 ~~~L~~~vllP~~~Gq~~r~~~~~~-----~~~~~~~~~~~~~~  198 (313)
T PF13593_consen  160 LIKLVLTVLLPLVLGQLLRRWVPKW-----VARHKKPLSLLSQL  198 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            9999999999999999999998874     44566666655443

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.95  E-value=1.5e-26  Score=201.71  Aligned_cols=167  Identities=23%  Similarity=0.366  Sum_probs=140.0

Q ss_pred             HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHH-HHhcCChhHHHHHHHhccCchhhhHHHHHHH
Q 023071          111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTH  189 (287)
Q Consensus       111 ~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~-~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~  189 (287)
                      +.++.+||.+|++++.+|+++..|||+.++.+++.|++++|+++|+++ ..+..+++++.|+++++||||+..+++ ||+
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~-~t~   80 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNV-FTY   80 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHH-HHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHH-HHH
Confidence            457889999999999999999999999999999999999999999999 778889999999999999999999997 999


Q ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcee---cCHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcchhhh
Q 023071          190 LAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGIS---VPTKQLFKSLVLTLLIPLILGKVLRESIT--GECLNIF  264 (287)
Q Consensus       190 ~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~---i~~~~l~~~L~~~vllPl~lG~llr~~~~--~~~~~~~  264 (287)
                      ++|||.++++.++.++++++++++|+++.++.+  ...+   +++.+++.+++..+++|+++|+++|++.|  +..+  .
T Consensus        81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~--~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~--~  156 (187)
T PF01758_consen   81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG--GSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFAR--R  156 (187)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH---GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-H--H
T ss_pred             HhCCCcccccceeeHHHHHHHHHHHHHHHHHhc--cccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHH--H
Confidence            999999999999999999999999999999874  3344   44899999999999999999999999999  5555  5


Q ss_pred             hccccchhHHHHHHHHHH
Q 023071          265 IRPQNFLFFLFSMSYVSR  282 (287)
Q Consensus       265 ~~~~~~~~s~i~~~~v~~  282 (287)
                      .++..++++.+++..++.
T Consensus       157 ~~~~~~~~s~~~l~~~i~  174 (187)
T PF01758_consen  157 LKPFLKPLSFILLLLIIV  174 (187)
T ss_dssp             HHCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            677777777776665543

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>TIGR00841 bass bile acid transporter

Probab=99.94  E-value=4.6e-25  Score=204.55  Aligned_cols=164  Identities=24%  Similarity=0.332  Sum_probs=149.9

Q ss_pred             HHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcC
Q 023071          113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAG  192 (287)
Q Consensus       113 l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~ag  192 (287)
                      ++++||.+|++++.+|+++.+++|+.+..+++.|++++|++++.+++.++++++++.|+++++|||++.++++ ||+++|
T Consensus        14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v-~t~~~~   92 (286)
T TIGR00841        14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNV-FTYLLK   92 (286)
T ss_pred             HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHH-HHHHhC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999996 999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccc
Q 023071          193 GNSALALAMTIISNLLGIMIVPFSISKFIAA--GVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNF  270 (287)
Q Consensus       193 Gn~ala~~~~~lstlls~~~iPl~l~ll~~~--~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~  270 (287)
                      ||.++++.++.++|+++++++|+++.++.+.  +..+++|+.+++.+ +.++++|+++|+++|++.|+..+  +.++ .+
T Consensus        93 gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~~--~~~~-~~  168 (286)
T TIGR00841        93 GDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIAK--IILK-VG  168 (286)
T ss_pred             CCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH--HHHh-Cc
Confidence            9999999999999999999999999998752  23566999999999 99999999999999999988766  5666 67


Q ss_pred             hhHHHHHHHHH
Q 023071          271 LFFLFSMSYVS  281 (287)
Q Consensus       271 ~~s~i~~~~v~  281 (287)
                      .++.+.+.+++
T Consensus       169 ~~s~~~l~liv  179 (286)
T TIGR00841       169 LISVFLLSVII  179 (286)
T ss_pred             hHHHHHHHHHH
Confidence            77777665554

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.8e-22  Score=187.77  Aligned_cols=217  Identities=23%  Similarity=0.258  Sum_probs=177.9

Q ss_pred             chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhch------hHHHHHHHHHHhcCCCChhHHHHhhhch
Q 023071           63 SSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQL------SKFSTFAIFIVSGLTLRSGEIGAAAEAW  136 (287)
Q Consensus        63 ~~~~~~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~l------~~~~l~lim~~~Gl~l~~~~l~~~~~~~  136 (287)
                      +.|.+++.++...    .|..++++.|+.+|..+|+..+.++..+.      ....+.+||+.+-++++.+++++..+++
T Consensus         5 ~~k~l~~~dk~l~----~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~   80 (342)
T COG0798           5 EKKKLSFLDKYLT----LWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP   80 (342)
T ss_pred             HhhhhhHHHHHHH----HHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc
Confidence            4455656555444    23569999999999999997776663321      2345667889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 023071          137 PVGIFGLFSILLFTPYFSKLILQVQLQ-PQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPF  215 (287)
Q Consensus       137 ~~~l~~~~~~~vl~Plla~~l~~l~~l-~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl  215 (287)
                      |.+..++..|+++.|++++++++++.. .|++.+|+++.+..||..++.+ |+++++||.++++..+.++.++++++.|.
T Consensus        81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMViv-w~~La~Gd~~~tlv~Va~n~l~qiv~y~~  159 (342)
T COG0798          81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIV-WSGLAKGDRELTLVLVAFNSLLQIVLYAP  159 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHH-HHhhccCcHhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998654 4789999999999999999996 99999999999999999999999999999


Q ss_pred             HHHHHhhcCCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhc-ccc---chhHHHHHHHHH-Hhhc
Q 023071          216 SISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIR-PQN---FLFFLFSMSYVS-RLFS  285 (287)
Q Consensus       216 ~l~ll~~~~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~-~~~---~~~s~i~~~~v~-~~~~  285 (287)
                      +...+.+. ..++++++++++++++.+.+|+++|++.|++..++..++|.+ |.+   .+++.+++.+.+ .+|+
T Consensus       160 ~~~~~l~v-~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~  233 (342)
T COG0798         160 LGKFFLGV-ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFA  233 (342)
T ss_pred             HHHHHHhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence            99999864 368999999999999999999999999999876655433433 333   455556655543 3443

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.60  E-value=3e-14  Score=133.81  Aligned_cols=145  Identities=18%  Similarity=0.088  Sum_probs=124.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhcCccccchh-hhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHH
Q 023071           72 PLLKIAADNFLPLALIGGVAFGFANPSLGCLAD-KYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLF  149 (287)
Q Consensus        72 ~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~-~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl  149 (287)
                      +..+.+.+||.++++++|+++....-..+.+.+ ..+ ++..+.|++|+..|++++.++.+   ++++........|+++
T Consensus       174 ~~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil  250 (321)
T TIGR00946       174 FVWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLV  250 (321)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHH
Confidence            334445578889999999998887644444333 333 78899999999999999887765   3456677788899999


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          150 TPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       150 ~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll  220 (287)
                      .|++++.+...++++++.....++++++|++..+++ +++++|+|.++++..+.+||++|++++|+|+.++
T Consensus       251 ~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i-~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       251 QPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAV-LATEYEVDVELASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999996 9999999999999999999999999999999875

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=99.60  E-value=5.2e-16  Score=136.27  Aligned_cols=195  Identities=28%  Similarity=0.453  Sum_probs=157.2

Q ss_pred             hhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCcccc----chhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHH
Q 023071           66 GLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIF  141 (287)
Q Consensus        66 ~~~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~----~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~  141 (287)
                      +.-|.+|+.++.+++|+..++.+.+..+.+.|+.+.    ..++|+++++.+..+|+..|++++.|++..+.++|+++++
T Consensus         9 r~i~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLF   88 (287)
T KOG4821|consen    9 RKIWAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLF   88 (287)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHH
Confidence            445778999999999999999999999999988764    3345667888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc---CChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHH
Q 023071          142 GLFSILLFTPYFSKLILQVQL---QPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALAL-AMTIISNLLGIMIVPFSI  217 (287)
Q Consensus       142 ~~~~~~vl~Plla~~l~~l~~---l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~-~~~~lstlls~~~iPl~l  217 (287)
                      +++..+.+.|-..|++.....   .|.++..|+.+.+|||++++|+|++|..+|||.+.+. ....++.+++....|-..
T Consensus        89 ilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~  168 (287)
T KOG4821|consen   89 ILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALV  168 (287)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            999999999999999887643   4568999999999999999999999999999984333 233445666666666666


Q ss_pred             HHHhhc----------CCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023071          218 SKFIAA----------GVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGEC  260 (287)
Q Consensus       218 ~ll~~~----------~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~  260 (287)
                      ..++..          |.++..-+..++.+....+++|...|...+...++-+
T Consensus       169 q~LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  221 (287)
T KOG4821|consen  169 QMLLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGT  221 (287)
T ss_pred             HHHHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCce
Confidence            555421          2223334455778888899999999999998777654

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.60  E-value=4.9e-15  Score=141.00  Aligned_cols=192  Identities=17%  Similarity=0.177  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHhhcC-ccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023071           84 LALIGGVAFGFANP-SLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQL  162 (287)
Q Consensus        84 lail~gi~lg~~~P-~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~  162 (287)
                      .....+-......| ....|+..- .........|++.|++++.+++++..++|.....+++.|++++|+.++.+.+.+.
T Consensus        90 ~~~~~~~v~~~~~~~~~~t~l~~~-~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~  168 (371)
T KOG2718|consen   90 LLVFLLKVLFLLDPLLAFTWLVTG-CFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLL  168 (371)
T ss_pred             HHHHHHHHHhhcCCcccceEEEeC-ccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhh
Confidence            33333334444444 455554432 3344566788999999999999999999999999999999999999999999888


Q ss_pred             CChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHHHHHHHHHHH
Q 023071          163 QPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTL  242 (287)
Q Consensus       163 l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~l~~~L~~~v  242 (287)
                      ++...+.|.+++.|++++..++..++..-+||..++..+|.++|+.+++++|++-.++.  +..+..|...+..+....+
T Consensus       169 lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~--~~l~~~d~~~v~~s~~~vv  246 (371)
T KOG2718|consen  169 LPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLG--RALIPVDALGVIASILQVV  246 (371)
T ss_pred             CCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhc--hhhhcccchhhhhhhhHHh
Confidence            88877566666665555555444355555999999999999999999999999998885  4556677777777889999


Q ss_pred             HHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHHH
Q 023071          243 LIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYV  280 (287)
Q Consensus       243 llPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~v  280 (287)
                      .+|+.+|.++|+++|++.+  .+++..+++++......
T Consensus       247 ~~pl~lG~lL~~~~~k~t~--~i~~~~~~vsv~~t~l~  282 (371)
T KOG2718|consen  247 GLPLALGLLLNKWFPKRTV--AIEPGLPPVSVCLTILC  282 (371)
T ss_pred             HHHHHHHHHhcccCcccee--eeecCCCchHHHhhhhh
Confidence            9999999999999999988  79999999887765543

>PRK09903 putative transporter YfdV; Provisional

Probab=99.54  E-value=1.8e-13  Score=128.42  Aligned_cols=144  Identities=16%  Similarity=0.130  Sum_probs=120.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhcCccccchhh-hc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHH
Q 023071           71 KPLLKIAADNFLPLALIGGVAFGFANPSLGCLADK-YQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL  148 (287)
Q Consensus        71 ~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~-~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~v  148 (287)
                      |.+++ +.+||.++++++|+++....-..+.+.++ .+ +++.++|++|+..|.+++..+++.   +++ .....+.|++
T Consensus       165 ~~l~~-~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~---~~~-~~~~~~~Kli  239 (314)
T PRK09903        165 SALIS-AAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEF---SAE-IAYNTFLKLI  239 (314)
T ss_pred             HHHHH-HHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cHH-HHHHHHHHHH
Confidence            44554 45789999999999988765333333333 23 788999999999999998876542   233 3467788999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          149 FTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       149 l~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll  220 (287)
                      +.|++++.+...++++++....+++.+++|++.++++ +++++|+|.++++..+.+||++|.+++|+|++++
T Consensus       240 ~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i-~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        240 LMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII-IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888999999999999999999999997 9999999999999999999999999999999876

>COG0679 Predicted permeases [General function prediction only]

Probab=99.43  E-value=5.2e-12  Score=118.61  Aligned_cols=150  Identities=26%  Similarity=0.313  Sum_probs=124.4

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccchh-hhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHH
Q 023071           69 WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLAD-KYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSI  146 (287)
Q Consensus        69 ~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~-~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~  146 (287)
                      ..++..+-+.+||.+++.+.|.++....-..+...+ ..+ ++..+.|++|+..|++++.++.++  .+++........|
T Consensus       157 ~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~k  234 (311)
T COG0679         157 SLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLK  234 (311)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHH
Confidence            445555667789999999999998875533333333 222 788899999999999999965553  2345555566679


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071          147 LLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFI  221 (287)
Q Consensus       147 ~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~  221 (287)
                      ++++|++++.+.++++++++....+++..++|++.++++ +++++++|.+++...+.+||+++.+++|.+...+.
T Consensus       235 ll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v-~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~  308 (311)
T COG0679         235 LLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYV-LARQYGGDPRLAASTILLSTLLSLLTLPLLILLLL  308 (311)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988889999999999999996 99999999999999999999999999999988774

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=99.27  E-value=1.7e-10  Score=110.23  Aligned_cols=140  Identities=24%  Similarity=0.276  Sum_probs=117.1

Q ss_pred             HHHhhHHHHHHHHHHHHHhhcCccc----cchhhh-c-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHH
Q 023071           76 IAADNFLPLALIGGVAFGFANPSLG----CLADKY-Q-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLF  149 (287)
Q Consensus        76 ~l~~n~l~lail~gi~lg~~~P~~~----~~~~~~-~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl  149 (287)
                      ...+||..++.++|+++++..+...    .+.... + ++...+|+.|+.+|.++.....+... +++......+.++++
T Consensus       240 ~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rlii  318 (385)
T PF03547_consen  240 KLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRLII  318 (385)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHHHH
Confidence            3446888899999999999876655    444432 2 77889999999999999876544332 333444568899999


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          150 TPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSI  217 (287)
Q Consensus       150 ~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l  217 (287)
                      +|++++.+...++++++....+++.+++|++..+.+ ++.+++.|.+.+...+..+++++++++|+|+
T Consensus       319 ~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~-~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  319 LPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFV-IASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999998899999999999999996 9999999999999999999999999999984

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.58  E-value=0.0031  Score=59.21  Aligned_cols=173  Identities=16%  Similarity=0.178  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhhcCccccchhhhc--h---hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071           82 LPLALIGGVAFGFANPSLGCLADKYQ--L---SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL  156 (287)
Q Consensus        82 l~lail~gi~lg~~~P~~~~~~~~~~--l---~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~  156 (287)
                      +++=+++|.++.-++|+.......++  +   ....+.+.++++|.+++.++..+.+||-..   .++.|+++-=+++++
T Consensus        15 mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~---ll~~K~~~~~~lgl~   91 (314)
T PF03812_consen   15 MVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGV---LLLVKFIIGALLGLL   91 (314)
T ss_pred             eHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhH---HHHHHHHHHHHHHHH
Confidence            55778889999999998866433332  1   123455678999999999999998875433   457899999999999


Q ss_pred             HHHHhcCChh-----H-HHHHHHhccC-chhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceec
Q 023071          157 ILQVQLQPQE-----F-VTGLALFSCM-PTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISV  229 (287)
Q Consensus       157 l~~l~~l~~~-----~-~~Glvl~~a~-P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i  229 (287)
                      +.++++.++.     + ...+.+.+++ -+-..-+..++++||-+.+-++ ...+    +...-|+.-.+.+|.....++
T Consensus        92 ~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA-~~i~----sl~~GPf~tMl~LG~sG~a~i  166 (314)
T PF03812_consen   92 VGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGA-FSIL----SLNDGPFFTMLALGASGLANI  166 (314)
T ss_pred             HHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHH-HHHH----HhhhhHHHHHHHHhhccccCC
Confidence            9999876642     1 1122233332 2222223346777865555443 3333    344455555555554445678


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhcccc
Q 023071          230 PTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQN  269 (287)
Q Consensus       230 ~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~  269 (287)
                      |+..+     +-.++|+++|+++-..-++..+  +.++..
T Consensus       167 p~~~l-----v~~llP~iiG~iLGNLD~~~r~--fl~~~~  199 (314)
T PF03812_consen  167 PWMSL-----VAALLPIIIGMILGNLDPDFRK--FLAPGV  199 (314)
T ss_pred             CHHHH-----HHHHHHHHHHHHHhcCCHHHHH--HHhcCC
Confidence            86443     4677899999999877666554  555533

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=97.37  E-value=0.054  Score=49.49  Aligned_cols=143  Identities=15%  Similarity=0.119  Sum_probs=77.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHH
Q 023071           72 PLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFT  150 (287)
Q Consensus        72 ~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~  150 (287)
                      .+.+.++.+..+.-++.|+++|-..-+.-...+... +..+.....+|..|++++.+++++..|   .........++ .
T Consensus         9 ~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~---~~~~~~~~~~~-~   84 (273)
T TIGR00932         9 PLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRK---AAFGVGVLQVL-V   84 (273)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHHHHH-H
Confidence            344455566677788889888732111100001111 566778889999999999999987543   33322333333 3


Q ss_pred             HH--HHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHHHHHHc--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          151 PY--FSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLA--GGN-SALALAMTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       151 Pl--la~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~a--gGn-~ala~~~~~lstlls~~~iPl~l~ll  220 (287)
                      |.  +++.....++.+.  ....|..+....|.... .+ +.++-  +.+ ..+......++.+++.+..-+.....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~-~i-l~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~  159 (273)
T TIGR00932        85 PGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVV-QV-LKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLA  159 (273)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHH-HH-HHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            42  2333455565542  23334444333322222 22 33322  223 34566677788999988876665443

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.32  E-value=0.028  Score=53.27  Aligned_cols=135  Identities=21%  Similarity=0.231  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071           82 LPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ  161 (287)
Q Consensus        82 l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~  161 (287)
                      ++-.++..++.+...+....+-..  +.+....++=..+|.+++.+.+.+...++...+...+...+..-+.+|.+.+..
T Consensus         2 llG~~ia~~~~~~~~~~~~~~p~~--~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~   79 (318)
T PF05145_consen    2 LLGPMIAVIIAALFGPLPLRVPRR--LRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRIS   79 (318)
T ss_pred             chHHHHHHHHHHHhCCCccCCCHH--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            445666666777666444332222  223334444468899999999999888887777777777888888888888887


Q ss_pred             cCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023071          162 LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIA  222 (287)
Q Consensus       162 ~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~  222 (287)
                      +.|..    --+++++|++.+.-+++++..|+|...-+....+=-++-++++|+....+.+
T Consensus        80 ~~d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~  136 (318)
T PF05145_consen   80 GLDRA----TAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGG  136 (318)
T ss_pred             CCChh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77643    2357899999998888999999999999999999999999999999988764

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=97.30  E-value=0.025  Score=48.04  Aligned_cols=133  Identities=19%  Similarity=0.248  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 023071           81 FLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQV  160 (287)
Q Consensus        81 ~l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l  160 (287)
                      |++-.++.+..++.........  +..+....--++-...|.+++.+++++..+.+...+...+....+.=..++.+.+.
T Consensus        23 ~llG~mi~~~~~~~~~~~~~~~--P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~  100 (156)
T TIGR03082        23 WLLGPLLAGAVLSLAGGLEITL--PPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARL  100 (156)
T ss_pred             HHHHHHHHHHHHHhcCCccCCC--CHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666543221111  11122333444557889999999999988877766665666666666677778887


Q ss_pred             hcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          161 QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISK  219 (287)
Q Consensus       161 ~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~l  219 (287)
                      .+.|..-    .+++++|+|...-..+++..|.|...-+....+=.++-.+..|++..+
T Consensus       101 ~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       101 TGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7777433    257899999987777899999999999999988888888888886653

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=96.99  E-value=0.11  Score=49.77  Aligned_cols=101  Identities=19%  Similarity=0.347  Sum_probs=87.5

Q ss_pred             HHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHH
Q 023071          118 IVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSAL  197 (287)
Q Consensus       118 ~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~al  197 (287)
                      ..+|.+++.+++....++|...+...+......=+.+|.+.+.-..|++-+    +.+++|++.+.-+.+++-+|.|.++
T Consensus        69 ~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd~~~  144 (352)
T COG3180          69 IMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGADLRL  144 (352)
T ss_pred             HHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCCChhH
Confidence            577889999999998888988888888888888888999988765664332    4789999998888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023071          198 ALAMTIISNLLGIMIVPFSISKFIA  222 (287)
Q Consensus       198 a~~~~~lstlls~~~iPl~l~ll~~  222 (287)
                      .+.+..+=-+.-..+.|+...++.+
T Consensus       145 VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         145 VALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999874

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=96.80  E-value=0.051  Score=51.24  Aligned_cols=136  Identities=14%  Similarity=0.089  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHh-hcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 023071           81 FLPLALIGGVAFGF-ANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL  158 (287)
Q Consensus        81 ~l~lail~gi~lg~-~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~  158 (287)
                      ..++++++|++++- ....+..+..... .....+-.....+|.+++..|+.+.-  ++.++. .+......=.+++.++
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G--~~~~~~-~~~~v~~~~~~~~~lg  104 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALG--WKGLLI-IIIVVILTFLLTYWLG  104 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhC--ccHHHH-HHHHHHHHHHHHHHHH
Confidence            45699999999984 3322222211111 12344566667899999999998743  333332 3334444445667777


Q ss_pred             -HHhcCChhHHHHHHHhccCchhhhHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          159 -QVQLQPQEFVTGLALFSCMPTTLSSGVAL---THLAGGNSALALAMTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       159 -~l~~l~~~~~~Glvl~~a~P~a~~s~V~~---t~~agGn~ala~~~~~lstlls~~~iPl~l~ll  220 (287)
                       +.+++|++.. -++-.+.+=||.++.++.   .+.-+-|.++++..+.+-+.++++.+|.+-..+
T Consensus       105 ~r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l  169 (305)
T PF03601_consen  105 RRLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL  169 (305)
T ss_pred             HHHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence             9999986542 233333444444433322   334456788999999999999999999998775

; GO: 0016021 integral to membrane

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.65  E-value=0.29  Score=50.51  Aligned_cols=133  Identities=16%  Similarity=0.097  Sum_probs=73.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHhhcCccccchh---hh-chhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHH
Q 023071           73 LLKIAADNFLPLALIGGVAFGFANPSLGCLAD---KY-QLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL  148 (287)
Q Consensus        73 l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~---~~-~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~v  148 (287)
                      +.+.++-...+.-+++|+++|   |....+..   .. .+..+.+.++||..|+.++.+++++..|   ..+..-..+.+
T Consensus        23 l~~rl~lp~vlgyilaGillG---P~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~---~~~~~g~~qv~   96 (621)
T PRK03562         23 IAVRLGLGSVLGYLIAGCIIG---PWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRR---SIFGGGALQMV   96 (621)
T ss_pred             HHHHhCCChHHHHHHHHHHhC---cccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHH---HHHHHHHHHHH
Confidence            444444455666677788876   32222211   11 1456777789999999999999986533   33333344555


Q ss_pred             HHHHHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHH
Q 023071          149 FTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLAGGNSA---LALAMTIISNLLGIMIV  213 (287)
Q Consensus       149 l~Plla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~agGn~a---la~~~~~lstlls~~~i  213 (287)
                      +.-++++.++..++.+.  .+..|..+..+. ++....+ +.++-.-+.+   .+.....+.-++++.++
T Consensus        97 ~~~~~~~~~~~~~g~~~~~al~ig~~la~SS-taiv~~~-L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ll  164 (621)
T PRK03562         97 ACGGLLGLFCMLLGLRWQVALLIGLGLALSS-TAIAMQA-MNERNLMVTQMGRSAFAILLFQDIAAIPLV  164 (621)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHH-HHHhccccCchHHHHHHHHHHHHHHHHHHH
Confidence            44445556666666553  344455444433 3444554 6665433333   44555566666555433

>PRK05326 potassium/proton antiporter; Reviewed

Probab=96.63  E-value=0.38  Score=48.84  Aligned_cols=177  Identities=13%  Similarity=0.029  Sum_probs=83.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhcCccccchh--hh-chhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHH
Q 023071           72 PLLKIAADNFLPLALIGGVAFGFANPSLGCLAD--KY-QLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL  148 (287)
Q Consensus        72 ~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~--~~-~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~v  148 (287)
                      .+.+.+.-..++.-+++|+++|-..+..-...+  .. .+..+.+++++|..|++++.+++++..+   ..+.......+
T Consensus        23 ~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~---~~~~la~~gv~   99 (562)
T PRK05326         23 RLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALG---PALSLATLGVL   99 (562)
T ss_pred             HHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHH---HHHHHHHHHHH
Confidence            344444445666777888888753322111111  11 2567888899999999999999996553   22222222222


Q ss_pred             HHHHH--HHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHH--cC--CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 023071          149 FTPYF--SKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHL--AG--GNSALALAM---TIISNLLGIMIVPFSISK  219 (287)
Q Consensus       149 l~Pll--a~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~--ag--Gn~ala~~~---~~lstlls~~~iPl~l~l  219 (287)
                       .|.+  ++...++++.+  +..++++-++.-.+....+ ..-+  .|  =|..+...+   ..++..++++++=+.+.+
T Consensus       100 -~t~~~~g~~~~~l~g~~--~~~alllgai~s~Td~a~v-~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~  175 (562)
T PRK05326        100 -ITAGLTGLFAHWLLGLD--WLEGLLLGAIVGSTDAAAV-FSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIEL  175 (562)
T ss_pred             -HHHHHHHHHHHHHhcCC--HHHHHHHhhhhccCchHHH-HHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHH
Confidence             2322  23334455554  2333333333333322222 2222  22  233433333   234556666655554444


Q ss_pred             HhhcCCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023071          220 FIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITG  258 (287)
Q Consensus       220 l~~~~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~  258 (287)
                      ..+ +. .+.+. ..+..+...+.+-.++|.+..+....
T Consensus       176 ~~~-~~-~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~  211 (562)
T PRK05326        176 ITG-GE-TGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQ  211 (562)
T ss_pred             HhC-CC-CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432 11 12222 22333444445555555555444433

>COG2855 Predicted membrane protein [Function unknown]

Probab=96.57  E-value=0.31  Score=46.41  Aligned_cols=137  Identities=15%  Similarity=0.093  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 023071           81 FLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ  159 (287)
Q Consensus        81 ~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~  159 (287)
                      .+.+++++|++++.+...........+ -.+..+.......|.+++..|+.+.=  .+.+ ..........=++++.+++
T Consensus        39 al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G--~~~v-~~~~~~l~~t~~~~~~lg~  115 (334)
T COG2855          39 ALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVG--GSGV-LIIAITLSSTFLFAYFLGK  115 (334)
T ss_pred             HHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcC--ccHH-HHHHHHHHHHHHHHHHHHH
Confidence            567999999999944333322222211 23445666667899999999998753  2222 2333344444467788999


Q ss_pred             HhcCChhHHHHHHHhccCchhhhHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071          160 VQLQPQEFVTGLALFSCMPTTLSSGVALTHL---AGGNSALALAMTIISNLLGIMIVPFSISKFI  221 (287)
Q Consensus       160 l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~---agGn~ala~~~~~lstlls~~~iPl~l~ll~  221 (287)
                      .+++|...+. ++-+++.=||.++..+..-.   -+-|.+.++..+++-..++.+.+|.+-.++.
T Consensus       116 ~lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~  179 (334)
T COG2855         116 LLGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG  179 (334)
T ss_pred             HhCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence            9999975533 44455555655554323222   3345778888888888889999999877763

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=96.46  E-value=0.029  Score=52.61  Aligned_cols=174  Identities=12%  Similarity=0.083  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHhhcCccccchhhhc--h-h--HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071           82 LPLALIGGVAFGFANPSLGCLADKYQ--L-S--KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL  156 (287)
Q Consensus        82 l~lail~gi~lg~~~P~~~~~~~~~~--l-~--~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~  156 (287)
                      +++=+++|.++.-++|+.......++  + +  ...+.+.++++|.+++.++-.+.++|-..   .+..|+++-=+++++
T Consensus        15 MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~---l~~~K~~i~~~~g~~   91 (314)
T TIGR00793        15 MLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGT---LVVTKIAVAWVVAAI   91 (314)
T ss_pred             eHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcce---eeeHHHHHHHHHHHH
Confidence            34456788888888898865433332  1 1  12345568999999999999888875532   345789888889999


Q ss_pred             HHHHhcCCh-----hH-HHHHHHhccCc-hhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceec
Q 023071          157 ILQVQLQPQ-----EF-VTGLALFSCMP-TTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISV  229 (287)
Q Consensus       157 l~~l~~l~~-----~~-~~Glvl~~a~P-~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i  229 (287)
                      ++++++.++     .. ...+.+.+++- +-..-+..++++||-+.+-++ ....+.-    -=|+...+.+|...-.++
T Consensus        92 ~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA-~~i~sl~----~GPf~TMi~LG~sGlA~i  166 (314)
T TIGR00793        92 ASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGA-FVLMSLE----SGPLMTMVILGTAGIASF  166 (314)
T ss_pred             HHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhh-hhhhhhc----cCcHHHHHHHhhccCCCC
Confidence            999988665     11 11122222222 111222235888865544433 3333333    335555555554444578


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccc
Q 023071          230 PTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNF  270 (287)
Q Consensus       230 ~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~  270 (287)
                      |+..+     +-.++|+++|+++-..-+++.+  +.++..+
T Consensus       167 p~~~l-----v~~ilPlliG~ilGNLD~~~r~--fl~~~~~  200 (314)
T TIGR00793       167 EPHVF-----VGAVLPFLVGFALGNLDPELRD--FFSKAVQ  200 (314)
T ss_pred             CHHHH-----HHHHHHHHHHHHHhcCCHHHHH--HhccCCC
Confidence            86443     4677899999999877666554  5555433

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.37  E-value=0.63  Score=47.80  Aligned_cols=132  Identities=14%  Similarity=0.138  Sum_probs=69.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHhhcCccccch---hhh-chhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHH
Q 023071           74 LKIAADNFLPLALIGGVAFGFANPSLGCLA---DKY-QLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLF  149 (287)
Q Consensus        74 ~~~l~~n~l~lail~gi~lg~~~P~~~~~~---~~~-~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl  149 (287)
                      .+.++-...+.-+++|+++|   |....+.   +.. .+..+.+.++||..|+.++.+++++..+   ..+..-..+.++
T Consensus        24 ~~rl~~p~ilg~ilaGillG---P~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~---~~~~~g~~~v~~   97 (601)
T PRK03659         24 AQRLGIGAVLGYLLAGIAIG---PWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRR---SIFGVGAAQVLL   97 (601)
T ss_pred             HHHhCCChHHHHHHHHHHhc---cccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHHHHHHHHH
Confidence            33444455666677788776   3221111   111 1456778889999999999999986433   233333344444


Q ss_pred             HHHHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHH
Q 023071          150 TPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLAGGNSA---LALAMTIISNLLGIMIV  213 (287)
Q Consensus       150 ~Plla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~agGn~a---la~~~~~lstlls~~~i  213 (287)
                      .-++...+...++.+.  .+..|+. ++.+.++....+ +.++-.-|.+   ++.....+..+.++.++
T Consensus        98 t~~~~~~~~~~~g~~~~~a~~~g~~-la~SSTaiv~~i-L~e~~~~~t~~G~~~l~vll~~Di~~i~ll  164 (601)
T PRK03659         98 SAAVLAGLLMLTDFSWQAAVVGGIG-LAMSSTAMALQL-MREKGMNRSESGQLGFSVLLFQDLAVIPAL  164 (601)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHHHHHHH-HHHcccccCchHHHHHHHHHHHHHHHHHHH
Confidence            3334444455555553  2333433 233444555554 6665443443   44445555665444333

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.33  E-value=0.66  Score=47.03  Aligned_cols=139  Identities=17%  Similarity=0.149  Sum_probs=73.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHH
Q 023071           73 LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTP  151 (287)
Q Consensus        73 l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~P  151 (287)
                      +.+.++....+.-+++|+++|-.........+... +..+.+.++||..|+.++.+++++.   ++....+...++++.-
T Consensus        24 l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~---~~~~~~~~~~~~~~~~  100 (558)
T PRK10669         24 LANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV---KSIAIPGAIAQIAVAT  100 (558)
T ss_pred             HHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH---hhHHHHHHHHHHHHHH
Confidence            33334445566677888887643222211111111 5667788899999999999999854   2334444555666555


Q ss_pred             HHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHH
Q 023071          152 YFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLAGGN---SALALAMTIISNLLGIMIVPFS  216 (287)
Q Consensus       152 lla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~agGn---~ala~~~~~lstlls~~~iPl~  216 (287)
                      ++++++...++.+.  .+..|..+.. ..++....+ +.++-.-|   ..++.....+..+.+++++-+.
T Consensus       101 ~~~~~~~~~~~~~~~~al~lg~~ls~-tS~~vv~~~-L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~~  168 (558)
T PRK10669        101 LLGMALSAVLGWSLMTGIVFGLCLST-ASTVVLLRA-LEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLL  168 (558)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHH-HHhcCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666542  2233332221 222222222 22222222   2355666677777665555443

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=96.12  E-value=0.48  Score=50.10  Aligned_cols=51  Identities=14%  Similarity=0.014  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHhhcCcc---ccch--hhh--chhHHHHHHHHHHhcCCCChhHHHHhh
Q 023071           83 PLALIGGVAFGFANPSL---GCLA--DKY--QLSKFSTFAIFIVSGLTLRSGEIGAAA  133 (287)
Q Consensus        83 ~lail~gi~lg~~~P~~---~~~~--~~~--~l~~~~l~lim~~~Gl~l~~~~l~~~~  133 (287)
                      ++.+++|+++|...-..   ..+.  +..  .++.+++.+.+|..|+.++.+.+++..
T Consensus        42 ~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~w   99 (810)
T TIGR00844        42 MVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHW   99 (810)
T ss_pred             HHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhH
Confidence            47778888877543111   1111  111  145567888999999999999998543

This model is specific for the fungal members of this family.

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=96.03  E-value=0.074  Score=50.20  Aligned_cols=173  Identities=18%  Similarity=0.117  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHhhcCccccchhhhc--hh----HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 023071           82 LPLALIGGVAFGFANPSLGCLADKYQ--LS----KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSK  155 (287)
Q Consensus        82 l~lail~gi~lg~~~P~~~~~~~~~~--l~----~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~  155 (287)
                      +++=+++|.++.-++|+.... ..++  +.    ...+.+.++++|.+++.++..+.+++-..   .+..|+++-=++++
T Consensus        15 m~vPl~lga~inTf~P~~l~i-G~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~---l~~~K~~~~~~~g~   90 (312)
T PRK12460         15 MVVPLLIGALINTFFPQALEI-GGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGV---LTITKLGVAIVIGL   90 (312)
T ss_pred             eHHHHHHHHHHHhccCcchhh-CcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhh---hhhHHHHHHHHHHH
Confidence            345567888888889988543 2221  11    12345568999999999999988875432   35679998888999


Q ss_pred             HHHHHhcCChhHHH-HHHHhccCc-hhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHH
Q 023071          156 LILQVQLQPQEFVT-GLALFSCMP-TTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQ  233 (287)
Q Consensus       156 ~l~~l~~l~~~~~~-Glvl~~a~P-~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~  233 (287)
                      +++++++.++..-. .+.+.+++- +-..-+..++++||-+.+ .......+.--+++.+=+    -++...-.++|+. 
T Consensus        91 ~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d-~gA~~~~sl~~GPf~tm~----aLga~gLA~ip~~-  164 (312)
T PRK12460         91 LVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDERD-VGAISILSLNDGPFFTML----ALGAAGLANIPIM-  164 (312)
T ss_pred             HHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhh-hhHHhhhhhccCcHHHHH----HHHHHHHhcCChH-
Confidence            99999887653211 222222222 111222235788854444 444444444444544422    2221112245543 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccc
Q 023071          234 LFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNF  270 (287)
Q Consensus       234 l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~  270 (287)
                         ++ .-+++|+++|++++...++..+  +.++-.+
T Consensus       165 ---~l-v~lilpILiGmilGNld~~~~~--~l~~Gi~  195 (312)
T PRK12460        165 ---AL-VAALLPLVLGMILGNLDPDMRK--FLTKGGP  195 (312)
T ss_pred             ---HH-HHHHHHHHHHHHHhccchhhHH--HHhccce
Confidence               33 3488999999999986665444  4555433

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=95.81  E-value=0.68  Score=43.84  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=82.2

Q ss_pred             HHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCH
Q 023071          116 IFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNS  195 (287)
Q Consensus       116 im~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~  195 (287)
                      +=...|.+++.+++++..|.....+...+.-+...=+.++.+.++.+.|.    .-.+++.+|+|...-...+...|.|.
T Consensus       213 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~A~~l~~d~  288 (318)
T PF05145_consen  213 IGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALIALALGADV  288 (318)
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHHHHHcCCCh
Confidence            44688999999999987776666655666666666677888888887763    34567889999977766899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071          196 ALALAMTIISNLLGIMIVPFSISKFI  221 (287)
Q Consensus       196 ala~~~~~lstlls~~~iPl~l~ll~  221 (287)
                      ++-+...++=.+.-.++.|++..++.
T Consensus       289 ~~V~~~q~~Rl~~v~~~~p~~~r~~~  314 (318)
T PF05145_consen  289 AFVAAHQVVRLLFVLLLAPFIARWLR  314 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888775

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=95.77  E-value=0.33  Score=43.89  Aligned_cols=90  Identities=17%  Similarity=0.265  Sum_probs=68.8

Q ss_pred             HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023071          128 EIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNL  207 (287)
Q Consensus       128 ~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstl  207 (287)
                      +.+...|+++.++.+...--++.-..++.+++.++.+++....+.-= +.=++.+..  .++..|||.++++..++++-+
T Consensus        79 ~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pk-SvTtpiAm~--vs~~iGG~~sLta~~vvitGi  155 (226)
T TIGR00659        79 QLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPK-SVTTPIAMH--VSEMIGGIPAVTAVFVILTGL  155 (226)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhH-HhhHHHHHH--HHHHhCChHHHHHHHHHHHHH
Confidence            33444467787877777766677788899999999998776644322 222333333  699999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023071          208 LGIMIVPFSISKF  220 (287)
Q Consensus       208 ls~~~iPl~l~ll  220 (287)
                      ++.++-|.++.++
T Consensus       156 ~Ga~~g~~ll~~~  168 (226)
T TIGR00659       156 LGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999998886

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=95.75  E-value=1.2  Score=43.48  Aligned_cols=170  Identities=17%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHh-hcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHH
Q 023071           73 LLKIAADNFLPLALIGGVAFGF-ANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFT  150 (287)
Q Consensus        73 l~~~l~~n~l~lail~gi~lg~-~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~  150 (287)
                      +.+.++-.+.+--++.|+++|- ..-......+..+ ++...+-+.||..|+..+.+++++..|+.   ..+...--+..
T Consensus        24 l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~  100 (397)
T COG0475          24 LFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTA  100 (397)
T ss_pred             HHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHH
Confidence            4444545666677888888874 1111111111222 56777888999999999999999766543   22233333334


Q ss_pred             H-HHHHHHHH-HhcCCh--hHHHHHHHhccCchhhhHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023071          151 P-YFSKLILQ-VQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLAGGNS---ALALAMTIISNLLGIMIVPFSISKFIAA  223 (287)
Q Consensus       151 P-lla~~l~~-l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~agGn~---ala~~~~~lstlls~~~iPl~l~ll~~~  223 (287)
                      | .++..... .++.+.  ....|.. ++..-++..+-+ +.++-+=+.   ........+..+.+.....+...+-.  
T Consensus       101 ~~~l~~~~~~~~~g~~~~~al~lg~~-l~~sS~~i~~~i-L~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~--  176 (397)
T COG0475         101 PFLLGLLLLLGILGLSLIAALFLGAA-LALSSTAIVLKI-LMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAG--  176 (397)
T ss_pred             HHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHHHHH-HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence            4 34322222 355552  3333333 333444455554 666433333   35556666777777777766555432  


Q ss_pred             CCceecC-HHHHHHHHHHHHHHHHHHH
Q 023071          224 GVGISVP-TKQLFKSLVLTLLIPLILG  249 (287)
Q Consensus       224 ~~~v~i~-~~~l~~~L~~~vllPl~lG  249 (287)
                      +...+.+ ...+...+.....+=+..|
T Consensus       177 ~g~~~~~~~~~~~~~~~~f~~~~l~~g  203 (397)
T COG0475         177 GGSGSVGFILGLLLAILAFLALLLLLG  203 (397)
T ss_pred             CCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence            2222222 2444445555555555555

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=95.75  E-value=0.29  Score=43.93  Aligned_cols=89  Identities=18%  Similarity=0.278  Sum_probs=70.0

Q ss_pred             HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023071          129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLL  208 (287)
Q Consensus       129 l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstll  208 (287)
                      .+...|+++.++.+....-++.-+..+.+++.++++++....+.-=+ .=++.+..  .++..|||.++++..++++-++
T Consensus        70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS-VTtpiAi~--is~~iGG~~sLta~~VvitGi~  146 (215)
T PF04172_consen   70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKS-VTTPIAIE--ISEQIGGIPSLTAVFVVITGIL  146 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-hhHHHHHH--HHHHhCChHHHHHHHHHHHhhH
Confidence            34444678888888888777777888899999999988766554332 22333333  6999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023071          209 GIMIVPFSISKF  220 (287)
Q Consensus       209 s~~~iPl~l~ll  220 (287)
                      +.+.-|.++.++
T Consensus       147 Ga~~g~~llk~~  158 (215)
T PF04172_consen  147 GAVLGPPLLKLL  158 (215)
T ss_pred             HHHhHHHHHhHc
Confidence            999999999886

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=95.68  E-value=2.2  Score=43.15  Aligned_cols=163  Identities=7%  Similarity=0.066  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHH--HHH
Q 023071           80 NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFS--KLI  157 (287)
Q Consensus        80 n~l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla--~~l  157 (287)
                      ...+.-+++|+++|...-......++-.+..+.++.++|..|.+++.+++++..   +.+.. +..--++.+.+.  +..
T Consensus        23 P~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~---~~i~~-la~~~vlit~~~v~~~~   98 (525)
T TIGR00831        23 PYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENF---RPIAL-IAFLLVVVTTVVVGFSL   98 (525)
T ss_pred             CHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHH
Confidence            344566777888885321111112221133467888999999999999998644   44432 222222233322  222


Q ss_pred             HHHhcCC--hhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCCceecCHH
Q 023071          158 LQVQLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA---MTIISNLLGIMIVPFSISKFIAAGVGISVPTK  232 (287)
Q Consensus       158 ~~l~~l~--~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~---~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~  232 (287)
                      .++++.+  ..+..|.++...-|.++.+   ..+..+=+..+...   -..++...+++..=+.+.+..+++   +.+..
T Consensus        99 ~~~~~l~~~~alllGails~TDpvav~~---il~~~~~p~rl~~il~gESllND~~alvlf~~~~~~~~~~~---~~~~~  172 (525)
T TIGR00831        99 NWILGIPLALALILGAVLSPTDAVAVLG---TFKSIRAPKKLSILLEGESLLNDGAALVVFAIAVAVALGKG---VFDPL  172 (525)
T ss_pred             HHHhcccHHHHHHHHHHhCCCCHHHHHH---HHhcCCCCHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCC---CCcHH
Confidence            2344443  2334444443333333222   23333434444432   256777777766555444443211   23344


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 023071          233 QLFKSLVLTLLIPLILGKVL  252 (287)
Q Consensus       233 ~l~~~L~~~vllPl~lG~ll  252 (287)
                      ....+++...+.-.++|.++
T Consensus       173 ~~~~~f~~~~~~gi~vG~~~  192 (525)
T TIGR00831       173 NAALDFAVVCVGGIAAGLAV  192 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33334333433344444443

This model is specific for the bacterial members of this family.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=95.55  E-value=1.5  Score=39.75  Aligned_cols=90  Identities=16%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023071          128 EIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNL  207 (287)
Q Consensus       128 ~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstl  207 (287)
                      +.+...|+|+.++.+.+.--++-=..++++++.++.+++....++= =+.-+..+..  .++..||-.++++..+.++-+
T Consensus        82 q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~P-kSvTTpiAm~--vs~~iGGip~ltav~Vi~tGi  158 (230)
T COG1346          82 QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLP-KSVTTPIAME--VSESIGGIPALTAVFVILTGI  158 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcc-cccccHHHHH--HHHhcCCchHHHHHHHHHHHH
Confidence            3444457888888887776666667889999999999876554432 1222333333  599999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023071          208 LGIMIVPFSISKF  220 (287)
Q Consensus       208 ls~~~iPl~l~ll  220 (287)
                      ++.++-|.++..+
T Consensus       159 ~Gavlg~~llk~~  171 (230)
T COG1346         159 LGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999887

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=95.55  E-value=0.48  Score=43.02  Aligned_cols=88  Identities=9%  Similarity=0.068  Sum_probs=69.3

Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 023071          130 GAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLG  209 (287)
Q Consensus       130 ~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls  209 (287)
                      +...|+++.++.+...--++.-+.++.++++++.|++....+.==+ .=+..+..  .++..||+.++++..++++-+++
T Consensus        87 ~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKS-VTtPIAm~--is~~iGG~psLtA~~ViitGi~G  163 (232)
T PRK04288         87 DVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQA-ATTAIALP--VSAGIGGIKEITSFAVIFNAVII  163 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHh-hhHHHHHH--HHHHhCCcHHHHHHHHHHHHHHH
Confidence            3334678888888888777777888999999999987766544322 22333333  69999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023071          210 IMIVPFSISKF  220 (287)
Q Consensus       210 ~~~iPl~l~ll  220 (287)
                      .++-|.++.++
T Consensus       164 ai~g~~llk~~  174 (232)
T PRK04288        164 YALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHc
Confidence            99999999886

>TIGR00698 conserved hypothetical integral membrane protein

Probab=95.20  E-value=0.83  Score=43.73  Aligned_cols=137  Identities=15%  Similarity=0.045  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHhhc-Cccccchh-hhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 023071           81 FLPLALIGGVAFGFAN-PSLGCLAD-KYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLI  157 (287)
Q Consensus        81 ~l~lail~gi~lg~~~-P~~~~~~~-~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l  157 (287)
                      .+++++++|++++-.. +......+ ..+ .....+-.....+|.+++..|+.+.-  ++.+..... .....=++++.+
T Consensus        33 ~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G--~~~l~~~~~-~v~~~~~~~~~~  109 (335)
T TIGR00698        33 ALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVG--PNEIVADTL-ILTSTFFLTVFL  109 (335)
T ss_pred             HHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhh--HHHHHHHHH-HHHHHHHHHHHH
Confidence            4457888888877533 22222211 111 12233455567899999999997643  223322222 222222344556


Q ss_pred             H-HHhcCChhHHHHHHHhccCchhhhHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071          158 L-QVQLQPQEFVTGLALFSCMPTTLSSGVALTH---LAGGNSALALAMTIISNLLGIMIVPFSISKFI  221 (287)
Q Consensus       158 ~-~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~---~agGn~ala~~~~~lstlls~~~iPl~l~ll~  221 (287)
                      + +.+++|++.. -++-.+..=||.++.++.+.   .-+-|.++++..+.+-+.++++.+|++-.++.
T Consensus       110 g~k~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       110 GSSRLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             HHHHhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence            6 6888886542 23333444444444433333   33446889999999999999999999987663

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PRK10711 hypothetical protein; Provisional

Probab=95.02  E-value=0.71  Score=41.93  Aligned_cols=88  Identities=14%  Similarity=0.096  Sum_probs=69.4

Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 023071          130 GAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLG  209 (287)
Q Consensus       130 ~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls  209 (287)
                      +...++++.++.+...--++.-..++.+++.++.|++....+.==+ .=+..+..  .++..||+.++++..++++-+++
T Consensus        82 ~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkS-VTtPIAm~--is~~iGG~~sLta~~ViitGi~G  158 (231)
T PRK10711         82 HQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKS-VTTPIAMA--VGGSIGGIPAISAVCVIFVGILG  158 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhh-hhHHHHHH--HHHHhCCcHHHHHHHHHHHHHHH
Confidence            3333678888888888777777888999999999988766554332 22333333  69999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023071          210 IMIVPFSISKF  220 (287)
Q Consensus       210 ~~~iPl~l~ll  220 (287)
                      .+.-|.++.++
T Consensus       159 a~~g~~llk~~  169 (231)
T PRK10711        159 AVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHc
Confidence            99999999886

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=94.95  E-value=0.51  Score=44.64  Aligned_cols=133  Identities=16%  Similarity=0.093  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071           82 LPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ  161 (287)
Q Consensus        82 l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~  161 (287)
                      .++.+++|+++|-..++.....++-  .++.+++.-|.+|.+++.+++.+.  -++.++.+.+ ..++.=.+.+.+.+++
T Consensus       169 lilpILiGmilGNld~~~~~~l~~G--i~f~I~f~~f~LG~~lnl~~I~~~--G~~GIlL~v~-vv~~t~~~~~~i~rll  243 (312)
T PRK12460        169 ALLPLVLGMILGNLDPDMRKFLTKG--GPLLIPFFAFALGAGINLSMLLQA--GLAGILLGVL-VTIVTGFFNIFADRLV  243 (312)
T ss_pred             HHHHHHHHHHHhccchhhHHHHhcc--ceEeHHHHHHHhcCCeeHHHHHHh--ChHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            3466666666665444443333332  123577777899999999999764  2334433333 3333445667777888


Q ss_pred             cCChhHHHHHHHh---ccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071          162 LQPQEFVTGLALF---SCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFI  221 (287)
Q Consensus       162 ~l~~~~~~Glvl~---~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~  221 (287)
                      +.++..  |..+-   +..=|+.+......-..+..++.|...+..+.++..++.|++..++.
T Consensus       244 g~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~  304 (312)
T PRK12460        244 GGTGIA--GAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA  304 (312)
T ss_pred             CCChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777554  33322   22222222222234455567777788888888888888888887764

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=94.81  E-value=0.04  Score=52.96  Aligned_cols=144  Identities=19%  Similarity=0.116  Sum_probs=101.7

Q ss_pred             HHHHHhhHHHHHHHHHHHHHhhcCcccc------ch----hhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHH
Q 023071           74 LKIAADNFLPLALIGGVAFGFANPSLGC------LA----DKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFG  142 (287)
Q Consensus        74 ~~~l~~n~l~lail~gi~lg~~~P~~~~------~~----~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~  142 (287)
                      ++-+...+ .++.++++++|..-|.-..      .+    +... ++..++|++++..|-++...-=+.. .+.+.+.-.
T Consensus       242 L~~i~~Pp-tia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~-~~~~~iigi  319 (408)
T KOG2722|consen  242 LKEIFAPP-TIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSA-LKTSVIIGI  319 (408)
T ss_pred             HHHhcCch-HHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcc-cCceEEEEE
Confidence            33343444 4888888888876553321      11    1222 5678899999999998876643333 345555556


Q ss_pred             HHHHHHHHHHHHHHHHHHh------c-CChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 023071          143 LFSILLFTPYFSKLILQVQ------L-QPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPF  215 (287)
Q Consensus       143 ~~~~~vl~Plla~~l~~l~------~-l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl  215 (287)
                      .+.+++++|+.+..+....      . .||-+...+++..++|++.... .+|++.|--.+-++....-+-.++.+..-+
T Consensus       320 ii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg-~itqL~g~~e~Ecs~il~W~y~va~l~ltv  398 (408)
T KOG2722|consen  320 IIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLG-TITQLNGVAERECSVILFWTYAVASLSLTV  398 (408)
T ss_pred             EEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHH-HHHHHhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            7779999999998887542      1 4577888999999999999999 599999987777777777777777766666


Q ss_pred             HHHHH
Q 023071          216 SISKF  220 (287)
Q Consensus       216 ~l~ll  220 (287)
                      |..++
T Consensus       399 w~~~f  403 (408)
T KOG2722|consen  399 WSVFF  403 (408)
T ss_pred             HHHHH
Confidence            66554

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=93.22  E-value=6.3  Score=37.97  Aligned_cols=107  Identities=13%  Similarity=0.178  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHH
Q 023071          111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHL  190 (287)
Q Consensus       111 ~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~  190 (287)
                      .+-.++....|.+++...+++..|.-...+...+..+.+.=..++.+.+..+.|..    -.+++..|+|...-...+..
T Consensus       241 va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma~~A~~  316 (352)
T COG3180         241 VAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMAAIAAA  316 (352)
T ss_pred             HHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHHHHHHH
Confidence            33445667889999999999876655555555555556666677777777776632    34678899999887667777


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071          191 AGGNSALALAMTIISNLLGIMIVPFSISKFI  221 (287)
Q Consensus       191 agGn~ala~~~~~lstlls~~~iPl~l~ll~  221 (287)
                      .+-|.++-.++.++=-++-.++.|.+...+.
T Consensus       317 l~ad~a~V~a~q~lRll~il~i~p~l~r~l~  347 (352)
T COG3180         317 LGADPAFVMALQVLRLLFILLLGPALARFLS  347 (352)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7779999999999988888888888877764

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=92.76  E-value=7.5  Score=37.80  Aligned_cols=146  Identities=13%  Similarity=0.043  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHhhc----Cccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHH-HH
Q 023071           69 WAKPLLKIAADNFLPLALIGGVAFGFAN----PSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGI-FG  142 (287)
Q Consensus        69 ~~~~l~~~l~~n~l~lail~gi~lg~~~----P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l-~~  142 (287)
                      ++.++.+++.  ..+++.+.+.+++-..    |...+   -|+ +..+.+|++.+.+=++.|.+++.+.-++.-... .+
T Consensus        17 ~~~~~f~~l~--~~vl~~~~~~~lsnlgli~~p~~s~---~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~   91 (378)
T PF05684_consen   17 TKWGFFKYLP--GAVLCYLLGMLLSNLGLIDSPASSP---VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG   91 (378)
T ss_pred             hhhhhHhhcC--HHHHHHHHHHHHHHCCCcCCCCcch---HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH
Confidence            3334556663  4457777777755432    22222   222 456667776666666888888876443221111 12


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          143 LFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       143 ~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll  220 (287)
                      .+...+-. .+++.+..-...+..+...-.+.+.-=+|....+++.+..+-+.++-....+.+++.+.+.+.+++.+-
T Consensus        92 ~~g~viG~-~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l~  168 (378)
T PF05684_consen   92 AVGTVIGA-VVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLALP  168 (378)
T ss_pred             HHHHHHHH-HHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222223 334444433312334455555555555555555679999999999999999999999988888776653

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=92.73  E-value=13  Score=38.03  Aligned_cols=135  Identities=10%  Similarity=0.051  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHhhc---Cccc-cchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchh-HHHHHHHHHHHHHHHHHHHH
Q 023071           83 PLALIGGVAFGFAN---PSLG-CLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWP-VGIFGLFSILLFTPYFSKLI  157 (287)
Q Consensus        83 ~lail~gi~lg~~~---P~~~-~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~-~~l~~~~~~~vl~Plla~~l  157 (287)
                      .+.+++|+++|...   +... ..+++-....+.+|.++|-.|.+++.+++++.++.-- ....+.+++.++.-...+.+
T Consensus        39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~  118 (559)
T TIGR00840        39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI  118 (559)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888642   2111 1122211345678889999999999999997664311 11223344444444444444


Q ss_pred             HHHhcC-----C--hhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 023071          158 LQVQLQ-----P--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA---MTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       158 ~~l~~l-----~--~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~---~~~lstlls~~~iPl~l~ll  220 (287)
                      ....+.     +  ..+..|.++.+.=|.++.+   .-+..+-+..+...   -..++...++++.=+...+.
T Consensus       119 ~~~~~~~~~~l~~~~allfGAiiSaTDPVAVla---i~~~~~v~~~L~~ll~gESllNDavaIVLf~~~~~~~  188 (559)
T TIGR00840       119 CLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLA---VFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFH  188 (559)
T ss_pred             HhhccccccCCCHHHHHHHhHHhcCCchHHHHH---HHHhcCCCcchhhheehhhhhhccHHHHHHHHHHHHH
Confidence            332221     2  2345555555555555553   23444445444433   35556666666655444433

This model is specific for the eukaryotic members members of this family.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=91.80  E-value=6.2  Score=40.80  Aligned_cols=104  Identities=14%  Similarity=0.038  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHH
Q 023071          109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVA  186 (287)
Q Consensus       109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~  186 (287)
                      ....+++.|+..|++++...+.+   +|..++...+..++.-++..+..++.++.+.  ....|+.+.   +.|-.+.+ 
T Consensus       270 ~~lll~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~---~~Gef~~v-  342 (621)
T PRK03562        270 KGLLLGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLG---QGGEFAFV-  342 (621)
T ss_pred             HHHHHHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHh---ccccHHHH-
Confidence            34567778889999999987763   3444444445567777788888888888763  355555443   34444444 


Q ss_pred             HHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          187 LTHLAGG----NSALALAMTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       187 ~t~~agG----n~ala~~~~~lstlls~~~iPl~l~ll  220 (287)
                      ....+..    |.+....++ +..+++.+++|++..++
T Consensus       343 l~~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~~  379 (621)
T PRK03562        343 VFGAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVLL  379 (621)
T ss_pred             HHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence            3332211    344444433 46678888888876553

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=91.77  E-value=6.4  Score=40.49  Aligned_cols=105  Identities=13%  Similarity=0.060  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChh--HHHHHHHhccCchhhhHHHH
Q 023071          109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQE--FVTGLALFSCMPTTLSSGVA  186 (287)
Q Consensus       109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~--~~~Glvl~~a~P~a~~s~V~  186 (287)
                      ....+++.|...|++++...+.+   +|..++...+..++.-++..++.++.++.+..  ...|+.+   .|.|-.+.+ 
T Consensus       267 ~~lll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L---~~~Gef~~v-  339 (601)
T PRK03659        267 KGLLLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVL---SQGGEFAFV-  339 (601)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH---hccccHHHH-
Confidence            34567788899999999987764   45555545555677778888888888887743  3445443   455555554 


Q ss_pred             HHHHc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          187 LTHLA---GGNSALALAMTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       187 ~t~~a---gGn~ala~~~~~lstlls~~~iPl~l~ll  220 (287)
                      +...+   |-=.+-.....+...+++.+++|++..++
T Consensus       340 l~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~  376 (601)
T PRK03659        340 LFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI  376 (601)
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33222   21112222333566677777888776653

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=91.50  E-value=9.3  Score=33.64  Aligned_cols=129  Identities=22%  Similarity=0.278  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChh--HHHHhh-hchhHHHHHHHHHHHHHHHHHHHHHHH
Q 023071           84 LALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSG--EIGAAA-EAWPVGIFGLFSILLFTPYFSKLILQV  160 (287)
Q Consensus        84 lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~--~l~~~~-~~~~~~l~~~~~~~vl~Plla~~l~~l  160 (287)
                      .++++|+++|+.........+.  ...+.+.+++|.+|+++..+  .+++.. -+++.... -+...+-.=+.++....+
T Consensus         3 ~~li~Gi~lG~~~~~~~~~~~~--~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Lli-pl~tIlGSllgg~l~~~l   79 (191)
T PF03956_consen    3 IALILGILLGYFLRPPFSLIDK--ISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLI-PLATILGSLLGGLLASLL   79 (191)
T ss_pred             eeHHHHHHHHHHhccccccccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            4678899999988655332222  55677888899999988765  333333 22333322 222222222334444455


Q ss_pred             hcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 023071          161 QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISN----LLGIMIVPFSISKF  220 (287)
Q Consensus       161 ~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lst----lls~~~iPl~l~ll  220 (287)
                      ++.+  ...++.+.+..===+.|.+.+++..  |.++.+ +..++|    +++.+.+|++...+
T Consensus        80 l~~~--~~~~lav~sG~GwYSlsg~~i~~~~--~~~~G~-iafl~n~~RE~~a~~~~P~~~r~~  138 (191)
T PF03956_consen   80 LGLS--LKESLAVASGFGWYSLSGVLITQLY--GPELGT-IAFLSNLFREILAIILIPLLARYF  138 (191)
T ss_pred             hcCC--HHHHHHHHccCcHHHhHHHHHHhhh--CHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444  4555655555544455565355543  444444 334444    57999999998844

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=90.29  E-value=29  Score=37.28  Aligned_cols=106  Identities=9%  Similarity=0.240  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHH-HHHHHHHHhcCC----hh----HHHHHHHhccCc
Q 023071          108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY-FSKLILQVQLQP----QE----FVTGLALFSCMP  178 (287)
Q Consensus       108 l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Pl-la~~l~~l~~l~----~~----~~~Glvl~~a~P  178 (287)
                      ++.+.+.+.||..|+.++.+++++..|   ..+...+..++ .|+ ++++++..++..    ..    +..|+.+. ..-
T Consensus       107 la~lGlillmFliGLE~Dl~~lr~~~k---~a~~ia~~~~i-lpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS-~Ts  181 (832)
T PLN03159        107 MANLGLLYFLFLVGVEMDISVIRRTGK---KALAIAIAGMA-LPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALS-VTA  181 (832)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHhcch---HHHHHHHHHHH-HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-Hhh
Confidence            456667778999999999999986433   22222222332 344 334444433211    11    12222221 111


Q ss_pred             hhhhHHHHHHHHc--CCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          179 TTLSSGVALTHLA--GGN-SALALAMTIISNLLGIMIVPFSISK  219 (287)
Q Consensus       179 ~a~~s~V~~t~~a--gGn-~ala~~~~~lstlls~~~iPl~l~l  219 (287)
                      .++.+.+ ++++-  +.+ ..+++...+++.+++.+++-+...+
T Consensus       182 ~pVv~ri-L~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l  224 (832)
T PLN03159        182 FPVLARI-LAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL  224 (832)
T ss_pred             HHHHHHH-HHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1123332 44333  222 4566777788888888777665443

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=89.49  E-value=0.029  Score=53.43  Aligned_cols=167  Identities=17%  Similarity=0.191  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHHhhcCccccc-hhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHH-HHH
Q 023071           80 NFLPLALIGGVAFGFANPSLGCL-ADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYF-SKL  156 (287)
Q Consensus        80 n~l~lail~gi~lg~~~P~~~~~-~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Pll-a~~  156 (287)
                      ...+.-++.|+++|...-...+. .+.++ +..+.+..+||..|.++|.+++++..++   ........+.+.=.+ ++.
T Consensus        21 P~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~   97 (380)
T PF00999_consen   21 PSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRR---ALALGLVGFLLPFILVGFL   97 (380)
T ss_dssp             ---------------------------S-SSHHHHS--SSHHHHTTGGGG------------------------------
T ss_pred             CHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccc---ccccccceeeehhhHHHHH
Confidence            44556677777777554221110 12222 5677888899999999999999865543   222222222222122 333


Q ss_pred             HHH---HhcCC--hhHHHHHHHhccCchhhhHHHHHHHHcC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcee
Q 023071          157 ILQ---VQLQP--QEFVTGLALFSCMPTTLSSGVALTHLAG--G-NSALALAMTIISNLLGIMIVPFSISKFIAAGVGIS  228 (287)
Q Consensus       157 l~~---l~~l~--~~~~~Glvl~~a~P~a~~s~V~~t~~ag--G-n~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~  228 (287)
                      +..   ..+.+  .....|..+....|..+...  +.+..+  + ..........++.+++.+...+.....   +...+
T Consensus        98 ~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~--l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~---~~~~~  172 (380)
T PF00999_consen   98 LSFFLFILGLSWAEALLLGAILSATSPAIVSPV--LKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA---QASGQ  172 (380)
T ss_dssp             ----------------TTHHHHTT--HHHHHHH--H-HHHT-SSTTHHHHTTTTTTTTTTTTTTT---------------
T ss_pred             HHHhhccchhhhHHHhhhHHhhhcccccchhhh--hhhhhcccccccchhhhhchhhccchhhhhhhhhhhh---ccccc
Confidence            332   22332  34555666666666655543  333333  2 355566778888888888888777665   12233


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          229 VPTKQLFKSLVLTLLIPLILGKVLRE  254 (287)
Q Consensus       229 i~~~~l~~~L~~~vllPl~lG~llr~  254 (287)
                      .+.......+...+..=.+.|...++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (380)
T PF00999_consen  173 SSLGQLLLSFLWIILIGIVIGLLFGW  198 (380)
T ss_dssp             --------------------------
T ss_pred             ccccchhcchhhhhhhheeeecccch
Confidence            44444444444444444444444443

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=88.47  E-value=27  Score=34.44  Aligned_cols=172  Identities=12%  Similarity=0.136  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHH-HHHHHHHHhcCChhHHHHHHHhc-cCchhhhHHHH
Q 023071          109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY-FSKLILQVQLQPQEFVTGLALFS-CMPTTLSSGVA  186 (287)
Q Consensus       109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Pl-la~~l~~l~~l~~~~~~Glvl~~-a~P~a~~s~V~  186 (287)
                      ....++.++|.-|.+++.+++++..   +.+..-...-.++.=+ .++...++++ +-++..++.+-+ .+||...+...
T Consensus        63 ~~l~l~ilLf~~g~~l~~~~l~~~~---~~I~~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l~gAilspTDPv~v~~  138 (429)
T COG0025          63 LVLFLAILLFAGGLELDLRELRRVW---RSILVLALPLVLITALGIGLLAHWLLP-GIPLAAAFLLGAILSPTDPVAVSP  138 (429)
T ss_pred             HHHHHHHHHHHhHhcCCHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHhHHhcCCCchhhHH
Confidence            3567788899999999999999654   3332211111111111 2222222222 223333333333 34555544444


Q ss_pred             HHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCc-eecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh
Q 023071          187 LTHLAGGNSALALAM---TIISNLLGIMIVPFSISKFIAAGVG-ISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLN  262 (287)
Q Consensus       187 ~t~~agGn~ala~~~---~~lstlls~~~iPl~l~ll~~~~~~-v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~  262 (287)
                      ..+..+=+......+   ..++.-.+++..=+.+....+++.. .+....+.+.....-+++=+.+|++.++......++
T Consensus       139 i~~~~~vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~  218 (429)
T COG0025         139 IFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRR  218 (429)
T ss_pred             HHhcCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            566677776666655   5778888888877777776532221 122233344444455556666666666554443321


Q ss_pred             hhhccccchhHHHHHHHHHHhh
Q 023071          263 IFIRPQNFLFFLFSMSYVSRLF  284 (287)
Q Consensus       263 ~~~~~~~~~~s~i~~~~v~~~~  284 (287)
                      .|.++.......++..+...++
T Consensus       219 ~~~~~~~~~~i~L~~~~~~~~~  240 (429)
T COG0025         219 GWTSPLLETLLTLLLAFAAYLL  240 (429)
T ss_pred             cccchHHHHHHHHHHHHHHHHH
Confidence            1223333444455555555443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.07  E-value=18  Score=36.67  Aligned_cols=107  Identities=9%  Similarity=0.030  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHhccCchhhhHHHHH
Q 023071          110 KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVTGLALFSCMPTTLSSGVAL  187 (287)
Q Consensus       110 ~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~--~~~~~Glvl~~a~P~a~~s~V~~  187 (287)
                      ....|+.|...|++++...+.+   ++...+...+..++.-.+..+..+..++.+  .....|+.+..--.-+....- .
T Consensus       279 ~~f~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~-~  354 (558)
T PRK10669        279 DAFAVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAG-L  354 (558)
T ss_pred             HHHHHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHH-H
Confidence            4557778889999999987753   333333334445555566666666666655  345556655433333322221 2


Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071          188 THLAGGNSALALAMTIISNLLGIMIVPFSISKF  220 (287)
Q Consensus       188 t~~agGn~ala~~~~~lstlls~~~iPl~l~ll  220 (287)
                      ....|==.+-....+++.++++.+++|++....
T Consensus       355 ~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~  387 (558)
T PRK10669        355 GMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL  387 (558)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222221122233346666778888888776553

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=88.03  E-value=27  Score=33.83  Aligned_cols=187  Identities=17%  Similarity=0.266  Sum_probs=102.2

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccc--hh-hhc--hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHH
Q 023071           68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCL--AD-KYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFG  142 (287)
Q Consensus        68 ~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~--~~-~~~--l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~  142 (287)
                      ++.|+=.++++|...|-.++.|.+..+..+.....  .+ +++  +.+......|-.+|++-+.+.+++.-|+-......
T Consensus        20 ~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~   99 (368)
T PF03616_consen   20 KFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLI   99 (368)
T ss_pred             HHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHH
Confidence            35666778899999999999998855553222211  11 111  22222223345788888888887644322222111


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHH----hccCchhhh--HHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH-H
Q 023071          143 LFSILLFTPYFSKLILQVQLQPQEFVTGLAL----FSCMPTTLS--SGVALTHLA--GGNSALALAMTIISNLLGIMI-V  213 (287)
Q Consensus       143 ~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl----~~a~P~a~~--s~V~~t~~a--gGn~ala~~~~~lstlls~~~-i  213 (287)
                      ......+.=+++..++.+++.+|.+  |++.    +.-=+++.+  ... +.+.+  .+-.+++....++..+.+.+. .
T Consensus       100 ~~~~~~~Q~~vG~~la~l~gl~p~~--Gll~Gsi~f~GGhGTAaa~g~~-fe~~~G~~~a~~vg~a~AT~Glv~G~liGg  176 (368)
T PF03616_consen  100 AIILAFLQNIVGLGLAKLLGLDPLF--GLLAGSIGFTGGHGTAAAFGPT-FEELYGWEGATSVGMAAATFGLVVGGLIGG  176 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchH--HHHhccccccCCccHHHHHHHH-HHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence            1122334445667777888888754  4422    112233332  232 44442  344577777778888776544 6


Q ss_pred             HHHHHHHhhc----C------------------CceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023071          214 PFSISKFIAA----G------------------VGISVPTKQLFKSLVLTLLIPLILGKVLRESITG  258 (287)
Q Consensus       214 Pl~l~ll~~~----~------------------~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~  258 (287)
                      |+.=++.-..    .                  ..-+++..+++..+ ..+.+.+.+|..++.+..+
T Consensus       177 pi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l-~~i~i~~~~G~~i~~~l~~  242 (368)
T PF03616_consen  177 PIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHL-ALILIAIGLGYIISALLKK  242 (368)
T ss_pred             HHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            7654443210    0                  00123445565555 4678888899888887665

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=87.11  E-value=0.061  Score=52.00  Aligned_cols=99  Identities=16%  Similarity=0.084  Sum_probs=78.3

Q ss_pred             HHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHH-HHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCC
Q 023071          115 AIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL-FTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG  193 (287)
Q Consensus       115 lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~v-l~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agG  193 (287)
                      ..|+..|++++...+.+..+++..+......++- ++|...+.....+..++....-.+...++|.+..+++ ++.-.++
T Consensus        52 ~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~-ls~g~~~  130 (371)
T KOG2718|consen   52 FVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNM-LSFGIKL  130 (371)
T ss_pred             HhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHH-HHHhcCc
Confidence            4456777777777777666555455556667777 9999999999888888767788899999999999996 9999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q 023071          194 NSALALAMTIISNLLGIMIVP  214 (287)
Q Consensus       194 n~ala~~~~~lstlls~~~iP  214 (287)
                      |.+....++.-.+.+.+..+|
T Consensus       131 ~~~~~~~~~~rP~~~~lG~v~  151 (371)
T KOG2718|consen  131 DMDLFAGMIKRPTPLALGFVP  151 (371)
T ss_pred             cHHHHhhHhhCCcceeehHHH
Confidence            999999998766665555555

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=86.12  E-value=25  Score=33.59  Aligned_cols=163  Identities=15%  Similarity=0.098  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHhhcCccccchhhhc--hh----HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071           83 PLALIGGVAFGFANPSLGCLADKYQ--LS----KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL  156 (287)
Q Consensus        83 ~lail~gi~lg~~~P~~~~~~~~~~--l~----~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~  156 (287)
                      ++=+++|..+.-+.|+.... ..++  +.    ...+.+.++++|.+++.++....++|-..+   ++.|+.+--++++.
T Consensus        18 ~vpl~~g~~i~tf~P~~~~~-g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l---~~~k~~~~~~~~~~   93 (326)
T PRK05274         18 LVPLLLGALINTFAPGALYF-GSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTL---LLTKFAVAALVGVI   93 (326)
T ss_pred             eHHHHHHHHHHHhCCcceee-CcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhH---HHHHHHHHHHHHHH
Confidence            34466788888888986432 2221  11    123445689999999999998887655333   45677777777787


Q ss_pred             HHHHhcCCh---hHHHHH------HHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce
Q 023071          157 ILQVQLQPQ---EFVTGL------ALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGI  227 (287)
Q Consensus       157 l~~l~~l~~---~~~~Gl------vl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v  227 (287)
                      +.++++.+.   ....|.      -.+.-.=.+..... + ..++-+ .-.-....++.=-    -|.....++++....
T Consensus        94 ~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~-~-~~~g~~-~d~ga~i~lsl~~----Gp~~tM~lL~aagla  166 (326)
T PRK05274         94 AGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAAL-M-GQYGTK-EDAGAFVLMSLED----GPFMTMLALGAAGLA  166 (326)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-H-HHhCCC-CCcchHHHHHHhh----hHHHHHHHHHhhCcc
Confidence            877765432   111111      12222233333332 2 333222 1111122222222    244434444322223


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 023071          228 SVPTKQLFKSLVLTLLIPLILGKVLRESITGECL  261 (287)
Q Consensus       228 ~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~  261 (287)
                      +++..++.     -.++|+++|+.++.+.++..+
T Consensus       167 ~~p~~~li-----~allplliG~~lgnl~~~l~~  195 (326)
T PRK05274        167 SFPPPALV-----GAVLPLLVGFILGNLDPELRQ  195 (326)
T ss_pred             cCCCchhh-----HHHHHHHHHHHHHhHHHhhHH
Confidence            45554442     222999999999987665443

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=85.94  E-value=3.3  Score=39.53  Aligned_cols=130  Identities=15%  Similarity=0.055  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023071           84 LALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQ  163 (287)
Q Consensus        84 lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l  163 (287)
                      +.++.|..+|-+.+......++-  .++.++..-+..|.+++.+++.+.  .++.++ ..+.+.++.+.+.+.+.+++..
T Consensus       178 lplliG~~lgnl~~~l~~~~~~G--i~~lLp~~~~~lG~~l~lq~i~~~--G~~Gil-L~~~~~~~t~~~~~~~~Rl~~~  252 (326)
T PRK05274        178 LPLLVGFILGNLDPELRQFLGKA--VPVLIPFFAFALGNGIDLGTIITA--GLSGIL-LGVAVVAVTGIPLYLADRLIGG  252 (326)
T ss_pred             HHHHHHHHHHhHHHhhHHHhcCC--cEEEHHHHHHHHhcceeHhHHHhc--CCcchh-hhhhHhhccchhhHhHhheeec
Confidence            44555555554444333332221  123566666778888888877643  222332 2334555566667777787754


Q ss_pred             Chh---HHHHHH--HhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071          164 PQE---FVTGLA--LFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFI  221 (287)
Q Consensus       164 ~~~---~~~Glv--l~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~  221 (287)
                      ++.   .+.+.-  -..|-|.+++   ...-..++..+-++..+....+++.++.|++..++.
T Consensus       253 ~~g~~g~a~~ttaG~aic~pAAva---a~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~  312 (326)
T PRK05274        253 GNGVAGAAAGSTAGNAVATPAAVA---AADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWS  312 (326)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHH---hhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433   111111  1112222221   223344556666666666666677777777666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	5e-12

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 11/179 (6%)

Query: 78  ADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIV---SGLTLRSGEIGAAAE 134
                 L      A  F  P             +  + + I+    GLTL+  +     +
Sbjct: 16  IGKTFSLWAALFAAAAFFAPDTFK-----WAGPYIPWLLGIIMFGMGLTLKPSDFDILFK 70

Query: 135 AWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGN 194
              V I G+ +     P  +  + ++   P E   G+ L  C P   +S V +T+LA GN
Sbjct: 71  HPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV-MTYLARGN 129

Query: 195 SALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLR 253
            AL++A+T +S L   ++ P      + AG  + +    +  S+V  +L+P++LG ++ 
Sbjct: 130 VALSVAVTSVSTLTSPLLTPAIF--LMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVH 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=7e-32  Score=253.57  Aligned_cols=210  Identities=21%  Similarity=0.270  Sum_probs=187.6

Q ss_pred             hhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHH
Q 023071           65 KGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLF  144 (287)
Q Consensus        65 ~~~~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~  144 (287)
                      +.|+..+++.+|+.|+ +++++++++++|++.|+.+.+.+.+  .+..++++||.+|++++.+|+++.+++||.+..+++
T Consensus         4 ~~m~~l~~~~~~l~~~-~~l~i~~~~~lg~~~P~~~~~~~~~--i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~   80 (332)
T 3zux_A            4 ASMNILSKISSFIGKT-FSLWAALFAAAAFFAPDTFKWAGPY--IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVI   80 (332)
T ss_dssp             ---CHHHHHHHHHHHT-HHHHHHHHHHHHHHCGGGTGGGGGG--HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcchhhhhhHHH--HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHH
Confidence            4567889999999655 6799999999999999998887753  456889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023071          145 SILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAG  224 (287)
Q Consensus       145 ~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~  224 (287)
                      .|++++|+++++++++++++++++.|+++++||||+.+|++ ||+++|||.++++.++.+||+++++++|+++.++.  |
T Consensus        81 ~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v-~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~--g  157 (332)
T 3zux_A           81 AQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA--G  157 (332)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--C
Confidence            99999999999999999999999999999999999999997 99999999999999999999999999999999997  4


Q ss_pred             CceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHHHHH
Q 023071          225 VGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSR  282 (287)
Q Consensus       225 ~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~v~~  282 (287)
                      +.+++|+.+++.+++..+++|+++|+++|++.|++.+  +.++..+.++.+++.+++.
T Consensus       158 ~~~~v~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~--~~~~~l~~~s~~~illiv~  213 (332)
T 3zux_A          158 EMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTE--KLTDALPLVSVAAIVLIIG  213 (332)
T ss_dssp             GGGHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGH--HHHTTHHHHHHHHHHHHHH
T ss_pred             CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHhH
Confidence            5688999999999999999999999999999999876  5666666677666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00