Citrus Sinensis ID: 023087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ
Secondary Structure (PSIPRED)
cccccccEEEEccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEccccccccccHHHccHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHcccccEEEEEEcccccEEEEEEccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHcccEEEEEccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccHHHccccccHHHHHHHHHHHHccccccccEEEEEEccccHHcccHHHHHHHHHHHccccEEEEEEEcccccccEccHHHHHHcccEEEEEccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccEEEEEEcccccEEEEEEccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlrcgfgllmygfgskkALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQckskrktpsgnlpraqqpfnsrsmDDLFAfldgselkendYFVCVVIHnidgpglrdsetqqHLGRIAFCSHIRMIASidhvnapllwdkkmvhtqfnwhwyhvptfapykvegMFFPLilahgssaqTAKTAAIVLQSLTPNAQSVFKILAEYqlshpdeegmpidtlyATSRERFLVSSQVTLNshltefkdhelvktrrhsdgqdcfyIPLASEALEKLLSEINQ
Flexible Loop (DISEMBL)
MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKskrktpsgnlpraqqpfnsrSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTlnshltefkdhelvktrrhsdgqDCFYIPLASEALEKLLSEINQ
Low Complexity Region (SEG)
MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPlasealekllseINQ
Disordered region (IsUnstruct)
**RCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQC************************DLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHP**EGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEA**********
Disordered Region (DISOPRED)
MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK******************SRSMDDLF*FLD*****ENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGM********************VLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEI**
Disordered Region (DISEMBL)
MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ
Disordered Region (DISPRO)
MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKS******GNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEIN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q38899	363	Origin recognition comple	yes	no	0.993	0.785	0.730	1e-122
Q13416	577	Origin recognition comple	yes	no	0.923	0.459	0.339	3e-43
Q75PQ8	576	Origin recognition comple	yes	no	0.916	0.456	0.348	7e-43
Q60862	576	Origin recognition comple	no	no	0.923	0.460	0.339	8e-42
A6QNM3	577	Origin recognition comple	yes	no	0.912	0.454	0.338	2e-41
Q91628	558	Origin recognition comple	N/A	no	0.885	0.455	0.349	5e-41
Q24168	618	Origin recognition comple	yes	no	0.923	0.428	0.336	9e-40
Q09142	535	Origin recognition comple	yes	no	0.926	0.497	0.283	3e-25
Q55CU7	391	Origin recognition comple	yes	no	0.951	0.698	0.307	5e-25
P32833	620	Origin recognition comple	yes	no	0.951	0.440	0.265	5e-25

>sp|Q38899|ORC2_ARATH Origin recognition complex subunit 2 OS=Arabidopsis thaliana GN=ORC2 PE=1 SV=1

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/286 (73%), Positives = 247/286 (86%), Gaps = 1/286 (0%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKKAL+EDFAS +LT+YSVVVINGYL S+N+KQV++ LAE+L    K
Sbjct: 79  LRCGFGLLMYGFGSKKALVEDFASASLTDYSVVVINGYLPSVNLKQVLLALAELLSELLK 138

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
            KRK+ SG+L + Q+ F SRSMDD+ +FL G +  + D F+CVV+HNIDGP LRD E+QQ
Sbjct: 139 CKRKS-SGSLSKGQETFPSRSMDDILSFLHGPQSGDKDCFICVVVHNIDGPALRDPESQQ 197

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            L R++ CSHIR++ASIDHVNAPLLWDKKMVH QFNW W+HVPTFAPY VEG+FFPL+LA
Sbjct: 198 TLARLSSCSHIRLVASIDHVNAPLLWDKKMVHKQFNWLWHHVPTFAPYNVEGVFFPLVLA 257

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
            GS+AQTAKTAAIVLQSLTPN Q+VFKILAEYQLSHPDE+GMP D LY+ SRERF VSSQ
Sbjct: 258 QGSTAQTAKTAAIVLQSLTPNGQNVFKILAEYQLSHPDEDGMPTDDLYSASRERFFVSSQ 317

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ 287
           VTLNSHLTEFKDHELVKT+R+SDGQ+C  IPL S+A+ +LL ++NQ
Sbjct: 318 VTLNSHLTEFKDHELVKTKRNSDGQECLNIPLTSDAIRQLLLDLNQ 363

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q13416|ORC2_HUMAN Origin recognition complex subunit 2 OS=Homo sapiens GN=ORC2 PE=1 SV=2

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 161/286 (56%), Gaps = 21/286 (7%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           L  GF +++YG GSK+ LLE F +T L +   VVING+   I++K V+ ++ E + +   
Sbjct: 305 LHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVLDHMG 364

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           +                  RS+ D   ++     +++   + ++IHN+D   LR  ++QQ
Sbjct: 365 T-----------------FRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQ 407

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            +G+++   +I +IASIDH+NAPL+WD     + FNW WY   T++PY  E  +   +L 
Sbjct: 408 IIGQLSSLHNIYLIASIDHLNAPLMWDHAK-QSLFNWLWYETTTYSPYTEETSYENSLLV 466

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLV 238
             S +    +   VL+SLTPNA+ +F++L +YQL + D     G+     Y   RE FLV
Sbjct: 467 KQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLV 526

Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSE 284
           +S +TL + LTEF+DH+L++T++ +DG +   IP+ +  L   L +
Sbjct: 527 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEK 572

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Homo sapiens (taxid: 9606)

>sp|Q75PQ8|ORC2_RAT Origin recognition complex subunit 2 OS=Rattus norvegicus GN=Orc2 PE=2 SV=1

 Score =  174 bits (441), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 160/284 (56%), Gaps = 21/284 (7%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LR GF +++YG GSK+ LLE F +T L +   VVING+   I++K ++ ++ E + +   
Sbjct: 303 LRLGFNIVLYGLGSKRDLLEKFRTTMLQDSIHVVINGFFPGISVKSILNSITEDVLSHMG 362

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           +            Q   + R    +  F + S L+     + ++IHN+D   LR   +QQ
Sbjct: 363 T-----------FQSVLDQRDWI-MNRFKEDSSLE-----LFLLIHNLDSQMLRGDNSQQ 405

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            LG+++   ++ +IASIDH+NAPL+WD     + +NW WY   T++PY  E  +   +L 
Sbjct: 406 ILGQLSSLRNVYLIASIDHLNAPLMWDHAK-QSLYNWLWYETTTYSPYTEETSYENSLLV 464

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSH---PDEEGMPIDTLYATSRERFLV 238
             S +    +   VL+SLTPNA+ +F++L +YQL +   P   G+     Y   RE FLV
Sbjct: 465 KQSGSLPLSSLIHVLRSLTPNARGIFRLLMKYQLDNQDCPSYIGLSFQDFYQQCREAFLV 524

Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLL 282
           +S +TL + LTEF+DH+L++T++ +DG +   IP+ S  L   L
Sbjct: 525 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDSGTLADFL 568

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Rattus norvegicus (taxid: 10116)

>sp|Q60862|ORC2_MOUSE Origin recognition complex subunit 2 OS=Mus musculus GN=Orc2 PE=1 SV=1

 Score =  170 bits (431), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 160/286 (55%), Gaps = 21/286 (7%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           L  GF +++YG GSK+ LLE F +T L +   VVINGY   +++K ++ ++ E + +   
Sbjct: 304 LHLGFNIVLYGLGSKRDLLEKFRTTMLQDSIHVVINGYFPGVSVKSILNSITEDVLSHVG 363

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           +            Q   + R    +  F + S L+     + ++IHN+D   LR   +QQ
Sbjct: 364 T-----------FQSVLDQRDWI-INRFKEDSSLE-----LFLLIHNLDSQMLRGDNSQQ 406

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            LG+++   ++ +IASIDH+NAPL+WD     + +NW WY   T++PY  E  +   +L 
Sbjct: 407 ILGQLSSLHNVYLIASIDHLNAPLMWDHAK-QSLYNWLWYETTTYSPYTEETSYENSLLV 465

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLV 238
             S +    +   VL+SLTPNA+ +F++L ++QL + D     G+     Y   RE FLV
Sbjct: 466 KQSGSLPLSSLIHVLRSLTPNARGIFRLLMKFQLDNQDSPSYIGLSFQDFYQQCREAFLV 525

Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSE 284
           +S +TL + LTEF+DH+L++T++ +DG +   IP+ S  L   L +
Sbjct: 526 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDSGILADFLEK 571

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Mus musculus (taxid: 10090)

>sp|A6QNM3|ORC2_BOVIN Origin recognition complex subunit 2 OS=Bos taurus GN=ORC2 PE=2 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 158/284 (55%), Gaps = 22/284 (7%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           L  GF +++YG GSK+ LLE F +T L +   +VING+   I++K V+ ++ EVL     
Sbjct: 306 LHLGFNIVLYGLGSKRDLLERFRTTMLQDCIHIVINGFFPGISVKSVLNSVTEVL----- 360

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
                              RS+ D   ++     +++   + ++IHN+D   LR  ++QQ
Sbjct: 361 -------------DHVGTFRSVLDQLEWITNKFKEDSSLELFLLIHNLDSQMLRGDKSQQ 407

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            +G+++   +I +IASIDH+NAPL+WD     + +NW WY   T++ Y  E  +   +L 
Sbjct: 408 IIGQLSSLRNIYLIASIDHLNAPLMWDHAK-QSLYNWLWYETTTYSHYTEETSYENSLLV 466

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLV 238
             S +    +   VL+SLTPNA+ +F++L +YQL + D     G+     Y   RE FLV
Sbjct: 467 KQSGSLPLSSLIHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLCFQDFYQQCREAFLV 526

Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLL 282
           +S +TL + LTEF+DH+L++T++ +DG +   IP+ +  L   L
Sbjct: 527 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGILTDFL 570

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Bos taurus (taxid: 9913)

>sp|Q91628|ORC2_XENLA Origin recognition complex subunit 2 OS=Xenopus laevis GN=orc2 PE=2 SV=1

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 153/275 (55%), Gaps = 21/275 (7%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           L  GF ++++G GSK++L+E F ++ L +   +VIN +  SI  K ++ ++ E       
Sbjct: 286 LHLGFNIILFGLGSKQSLIEKFRTSLLQDSLHIVINEFFPSITAKSILNSITEEALGHPG 345

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           + R       P  Q  F       L  F D   L+     + ++IHN+D   LR  + QQ
Sbjct: 346 AFRS------PLDQMDFI------LQRFKDDPSLE-----LYLLIHNLDSQMLRGEKCQQ 388

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            LG++A   ++ ++AS+DH+NAPL+WD+    + +NW WY   TF  Y  E  +   +L 
Sbjct: 389 VLGQLASIPNLHLLASVDHINAPLMWDQSK-QSLYNWLWYETTTFGSYIEETSYENSLLV 447

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDE---EGMPIDTLYATSRERFLV 238
             S A    +   VL+SLTPNA+ +F++LAEYQ+++ D     G+     Y   RE FLV
Sbjct: 448 KRSGALALSSLTHVLRSLTPNARGIFRLLAEYQMANKDNPSYTGLSFQDFYQQCREAFLV 507

Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPL 273
           +S +TL + LTEF+DH+L++T++  DG +   IPL
Sbjct: 508 NSDLTLRAQLTEFRDHKLIRTKKGMDGVEYLLIPL 542

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Xenopus laevis (taxid: 8355)

>sp|Q24168|ORC2_DROME Origin recognition complex subunit 2 OS=Drosophila melanogaster GN=Orc2 PE=1 SV=2

 Score =  164 bits (414), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 156/288 (54%), Gaps = 23/288 (7%)

Query: 1   MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQC 60
           +L  GF +L+YG GSK  LL+ F    L + +V+V+NG+  S+ IK ++ ++   + +  
Sbjct: 346 ILNEGFNILLYGLGSKHQLLQSFHREVLHKQTVLVVNGFFPSLTIKDMLDSITSDILD-- 403

Query: 61  KSKRKTPSGNLPRAQQPFNSRSM-DDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSET 119
                  +G  P    P  +  M ++ FA +  + L        +++HN+DG  LR+ + 
Sbjct: 404 -------AGISP--ANPHEAVDMIEEEFALIPETHL-------FLIVHNLDGAMLRNVKA 447

Query: 120 QQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLI 179
           Q  L R+A   +I ++ASIDH+N PLLWD+  +   FN+ W+   T  PY  E  F   +
Sbjct: 448 QAILSRLARIPNIHLLASIDHINTPLLWDQGKL-CSFNFSWWDCTTMLPYTNETAFENSL 506

Query: 180 LAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDE---EGMPIDTLYATSRERF 236
           L   S      +   V  SLT N++ ++ ++ +YQL +      +GMP   LY++ RE F
Sbjct: 507 LVQNSGELALSSMRSVFSSLTTNSRGIYMLIVKYQLKNKGNATYQGMPFRDLYSSCREAF 566

Query: 237 LVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSE 284
           LVSS + L + LTEF DH+LVK++R  DG +   IP+    L++ L E
Sbjct: 567 LVSSDLALRAQLTEFLDHKLVKSKRSVDGSEQLTIPIDGALLQQFLEE 614

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Drosophila melanogaster (taxid: 7227)

>sp|Q09142|ORC2_SCHPO Origin recognition complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=orc2 PE=1 SV=1

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 30/296 (10%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           L   F LL YGFGSK+  L  F    L  + + V+ GY   + +K V+ +  E L     
Sbjct: 254 LVNNFNLLFYGFGSKEHFLSSFVEKKLPCFPIFVVKGYFPQLQLKNVLSSFLEFL----- 308

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
               TP+ ++  +     S S+ +  +F  G         +  ++HNIDG  L D   Q 
Sbjct: 309 --EVTPAASV--SDMLIQSLSIINSPSFSLGK--------IVFLVHNIDGESLIDERFQS 356

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMF-FPLIL 180
            L  IA   ++  IAS+DHVN  LLWD  +  + FN+  +   TFA Y  E  +   L +
Sbjct: 357 ALAAIASSKNVYFIASVDHVNFALLWDTSL-ESSFNFVMHDATTFARYYNETTYENSLGI 415

Query: 181 AHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLS-----------HPDEEGMPIDTLY 229
              + +   K    VL SL  N++ +FK L  +QL              ++ G+   + +
Sbjct: 416 GRANVSNKEKAIKHVLYSLPANSRGIFKFLLIHQLERMMDTQDFDARQGEKVGIEYRSFF 475

Query: 230 ATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEI 285
                 FL S++    S LTEF DH +++++R     +  ++P     LE LL ++
Sbjct: 476 QKCSAEFLCSNEPNFRSQLTEFFDHNIIESKRDVSNSEILWVPYPKNLLEILLEDM 531

Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. ORC binds to multiple sites within the ars1 origin of DNA replication in an ATP-independent manner.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55CU7|ORC2_DICDI Origin recognition complex subunit 2 OS=Dictyostelium discoideum GN=orcB PE=3 SV=1

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 151/306 (49%), Gaps = 33/306 (10%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           L+  + +L+ GFGSK  L+E F     T+   +   GYL +++++ ++  +   L+   K
Sbjct: 92  LKFDYSVLVSGFGSKIQLIETFVKEFCTDGPSLHFKGYLPNLSVRDLLYKITFSLFGIDK 151

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKEN-----DY----FVCVVIHNIDGP 112
            K  +P  +    +  F S SMD        +++++      DY     V VVIHNIDG 
Sbjct: 152 -KIASPIAHCNFIKSIFESGSMD-------INKMRQTFGGRFDYGIPDHVYVVIHNIDGY 203

Query: 113 GLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVE 172
            LR+  +Q  L  +A    + MIA+ID + A LLWD +M+ + FNW  Y +PT+ PY +E
Sbjct: 204 SLRNETSQLTLALLATIPQVHMIATIDAIGAQLLWDNRML-SNFNWTTYSMPTYQPYDLE 262

Query: 173 GMF--------FPLILAHGSSAQTAK-----TAAIVLQSLTPNAQSVFKILAEYQLSHPD 219
             +            +   SS+ T K     T   VL+SLT  +  +FK L  Y L    
Sbjct: 263 LSYDTNTKGGGGGGGIGSKSSSGTNKNLQPSTILTVLKSLTEISTDIFKELLTY-LIKKK 321

Query: 220 EEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALE 279
           +  M    L+   R+ FLVSS+  L + L EF DH+++  +   D      IP+ +  +E
Sbjct: 322 KNKMEFKILFDICRDAFLVSSESGLKTQLREFIDHKIIIQKEIGDTT-FLIIPIETSVME 380

Query: 280 KLLSEI 285
            +LS++
Sbjct: 381 IILSQL 386

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Dictyostelium discoideum (taxid: 44689)

>sp|P32833|ORC2_YEAST Origin recognition complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ORC2 PE=1 SV=2

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 147/320 (45%), Gaps = 47/320 (14%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTE---YS------------------VVVINGYL 40
           L  GF LL YG GSK+  LE+FA   L+    YS                   +++NGY 
Sbjct: 308 LTQGFSLLFYGVGSKRNFLEEFAIDYLSPKIAYSQLAYENELQQNKPVNSIPCLILNGYN 367

Query: 41  QSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPF-NSRSMDDLFAFLDGSELKEND 99
            S N + V   + ++L              L R++  +  +  +  +   +D  + +  D
Sbjct: 368 PSCNYRDVFKEITDLLV----------PAELTRSETKYWGNHVILQIQKMIDFYKNQPLD 417

Query: 100 YFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWH 159
             + +V+HN+DGP +R +  Q  L  ++    I ++AS DH+ APLLWD  M    +N+ 
Sbjct: 418 IKLILVVHNLDGPSIRKNTFQTMLSFLSVIRQIAIVASTDHIYAPLLWD-NMKAQNYNFV 476

Query: 160 WYHVPTFAPYKVEGMFFPLI-LAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHP 218
           ++ +  F P  VE  F  ++ +    ++  A+ A  VLQSLT N++ ++K+L E Q+ + 
Sbjct: 477 FHDISNFEPSTVESTFQDVMKMGKSDTSSGAEGAKYVLQSLTVNSKKMYKLLIETQMQNM 536

Query: 219 DEEGMPIDTLYATSRE-------------RFLVSSQVTLNSHLTEFKDHELVKTRRHSDG 265
                       T R               F+ S+++ L S L EF +H++    +++ G
Sbjct: 537 GNLSANTGPKRGTQRTGVELKLFNHLCAADFIASNEIALRSMLREFIEHKMANITKNNSG 596

Query: 266 QDCFYIPLASEALEKLLSEI 285
            +  ++P     LEKLL  +
Sbjct: 597 MEIIWVPYTYAELEKLLKTV 616

Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the ARS consensus sequence (ACS) of origins of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
225458581	362	PREDICTED: origin recognition complex su	0.993	0.787	0.807	1e-140
255573645	363	plant origin recognition complex subunit	0.996	0.787	0.818	1e-138
449470053	360	PREDICTED: origin recognition complex su	0.986	0.786	0.789	1e-134
356552198	366	PREDICTED: origin recognition complex su	0.989	0.775	0.757	1e-129
356562287	370	PREDICTED: LOW QUALITY PROTEIN: origin r	0.986	0.764	0.742	1e-126
357437889	361	Origin recognition complex subunit [Medi	0.968	0.770	0.740	1e-123
15224316	363	origin recognition complex subunit 2 [Ar	0.993	0.785	0.730	1e-121
297823599	361	ATORC2/ORC2 [Arabidopsis lyrata subsp. l	0.993	0.789	0.727	1e-120
356552200	347	PREDICTED: origin recognition complex su	0.923	0.763	0.722	1e-119
42571101	345	origin recognition complex subunit 2 [Ar	0.930	0.773	0.699	1e-117

>gi|225458581|ref|XP_002282636.1| PREDICTED: origin recognition complex subunit 2-like [Vitis vinifera]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/286 (80%), Positives = 262/286 (91%), Gaps = 1/286 (0%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKKAL+EDFASTALTE +V+VINGYLQSINIKQ V  +AE LW+Q K
Sbjct: 78  LRCGFGLLMYGFGSKKALIEDFASTALTECAVLVINGYLQSINIKQAVTAIAEALWDQLK 137

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           ++R TPSG+ P+ QQPFNSRSMDDL AF+DGS  ++ND FVCVVIHNIDGPGLRDS+TQQ
Sbjct: 138 TRR-TPSGDFPKVQQPFNSRSMDDLLAFMDGSHSEKNDCFVCVVIHNIDGPGLRDSDTQQ 196

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
           +L R+A CSHIRM+ASIDHVNAPLLWDKKMVHTQFNW WYHVPTF PYK EG+F+PLILA
Sbjct: 197 YLARVAACSHIRMVASIDHVNAPLLWDKKMVHTQFNWCWYHVPTFVPYKAEGIFYPLILA 256

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
           HG +AQ+AKTAAIVLQSLTPNAQSVFK+LAE+QL+HPDEEGMP++ LY+  RERFLVSSQ
Sbjct: 257 HGGTAQSAKTAAIVLQSLTPNAQSVFKVLAEHQLAHPDEEGMPVNNLYSICRERFLVSSQ 316

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ 287
           +TLNSHLTEFKDHEL+KTRRHSDGQDC YIPLA+EALEKLL +I+Q
Sbjct: 317 ITLNSHLTEFKDHELIKTRRHSDGQDCLYIPLATEALEKLLQDISQ 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573645|ref|XP_002527745.1| plant origin recognition complex subunit, putative [Ricinus communis] gi|223532886|gb|EEF34658.1| plant origin recognition complex subunit, putative [Ricinus communis]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/286 (81%), Positives = 259/286 (90%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKKAL+EDFASTALT+Y V+V+NGYLQSIN+KQV+I LAE+  +Q K
Sbjct: 78  LRCGFGLLMYGFGSKKALIEDFASTALTKYPVMVVNGYLQSINLKQVIIALAELWSDQLK 137

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           +KR+T S  LP+  QPF+SRSMDDL AFLD S ++ ND FVCVVIHNIDGPGLRDSE Q 
Sbjct: 138 TKRRTSSSILPKVLQPFSSRSMDDLLAFLDASHVEGNDSFVCVVIHNIDGPGLRDSENQH 197

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
           +L RIA CSHIR+IASIDHVNAPLLWDKKMVHTQFNW+WYHVPTFAPYKVEG+FFPLILA
Sbjct: 198 YLARIASCSHIRIIASIDHVNAPLLWDKKMVHTQFNWYWYHVPTFAPYKVEGIFFPLILA 257

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
           H S+AQ+AKTAAIVLQSLTPNAQSVFKILAEYQLSH +EEGMPID LYA SRE FLVSSQ
Sbjct: 258 HSSTAQSAKTAAIVLQSLTPNAQSVFKILAEYQLSHLEEEGMPIDNLYAVSREHFLVSSQ 317

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ 287
           VTLNSHLTEFKDHELVKTRR +DGQDC YIPL ++ALEKLLSEI+Q
Sbjct: 318 VTLNSHLTEFKDHELVKTRRRNDGQDCLYIPLTADALEKLLSEISQ 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470053|ref|XP_004152733.1| PREDICTED: origin recognition complex subunit 2-like [Cucumis sativus] gi|449496004|ref|XP_004160009.1| PREDICTED: origin recognition complex subunit 2-like [Cucumis sativus]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/285 (78%), Positives = 255/285 (89%), Gaps = 2/285 (0%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKK+L+EDFASTAL +YSV+V+NGYLQS+NIKQV+I +AE L +Q K
Sbjct: 78  LRCGFGLLMYGFGSKKSLIEDFASTALMDYSVIVVNGYLQSVNIKQVIIAIAEELSDQLK 137

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           S+ K  SG+     Q F+SRSMDDLF FL+GS  ++ D FVCVVIHNIDGPGLRDSETQ+
Sbjct: 138 SRPKNASGS--NVHQTFSSRSMDDLFVFLNGSNEEDKDCFVCVVIHNIDGPGLRDSETQE 195

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
           +L R+A CSH+R+IAS+DHVNAPLLWDKKMVHTQFNW WYHVPTFAPYK+EGMFFPLILA
Sbjct: 196 YLARVAACSHVRIIASVDHVNAPLLWDKKMVHTQFNWLWYHVPTFAPYKIEGMFFPLILA 255

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
           HG +AQ+AKTA IVLQSLTPNAQSVFK+L E+QLSHPDEEGMPID LYA  RERFLVSSQ
Sbjct: 256 HGGTAQSAKTATIVLQSLTPNAQSVFKVLIEHQLSHPDEEGMPIDKLYAICRERFLVSSQ 315

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEIN 286
           +TLNSHLTEFKDHELVKTRRHSDGQDC YIPL SEALEKLL+E++
Sbjct: 316 ITLNSHLTEFKDHELVKTRRHSDGQDCLYIPLPSEALEKLLTELS 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552198|ref|XP_003544456.1| PREDICTED: origin recognition complex subunit 2-like isoform 1 [Glycine max]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/285 (75%), Positives = 252/285 (88%), Gaps = 1/285 (0%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKK L+EDFAST LTEYSVVVINGYLQ+IN+KQVVI LAEVLW+Q K
Sbjct: 83  LRCGFGLLMYGFGSKKVLIEDFASTELTEYSVVVINGYLQTINLKQVVIALAEVLWDQMK 142

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           +K++    +LP++QQP NS+SMDDL  FLD +E+++ D+FVCVVIHNIDGPGLRDSETQ+
Sbjct: 143 AKQRVSHRDLPKSQQPSNSQSMDDLLTFLDQAEIEDGDFFVCVVIHNIDGPGLRDSETQR 202

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
           +L R+A C+ IR++ASIDHVNAPL WDK M HTQFNW WYHVPTFAPYKVEGMF+P+ILA
Sbjct: 203 YLARLAACARIRVVASIDHVNAPLFWDKNMAHTQFNWCWYHVPTFAPYKVEGMFYPMILA 262

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
           HGS++QT KTA IVL SLT NAQSVFKILAE+QLSHPD EGMPI  LY+  RERFLVSSQ
Sbjct: 263 HGSASQTVKTATIVLLSLTRNAQSVFKILAEHQLSHPD-EGMPISDLYSVCRERFLVSSQ 321

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEIN 286
           +TLNSHLTEFKDHELVK ++HSDGQDC +IPL +EAL+K++ EIN
Sbjct: 322 ITLNSHLTEFKDHELVKIKKHSDGQDCLHIPLTAEALQKVVLEIN 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562287|ref|XP_003549403.1| PREDICTED: LOW QUALITY PROTEIN: origin recognition complex subunit 2-like [Glycine max]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/284 (74%), Positives = 247/284 (86%), Gaps = 1/284 (0%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LR GFGLLMYGFGSKK L+EDFASTALTEYSVVVINGYLQ+IN+KQVVI LAE+LW Q K
Sbjct: 87  LRNGFGLLMYGFGSKKVLIEDFASTALTEYSVVVINGYLQTINLKQVVIALAEILWEQVK 146

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           +K++    +LP++QQ FNS+SM+DL  FLD +E++   +FVCVVIHNIDG GLRDSETQQ
Sbjct: 147 TKQRVSYRDLPKSQQSFNSKSMEDLLTFLDQAEIEAGAFFVCVVIHNIDGSGLRDSETQQ 206

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
           +L R+A C+ IR++ASIDHVNAPL WDK M HTQFNW WYHVPTFAPYKVEGMF+P+ILA
Sbjct: 207 YLARLAACAQIRVVASIDHVNAPLFWDKNMAHTQFNWCWYHVPTFAPYKVEGMFYPMILA 266

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
           HGS++QT KTA IVL SLT NAQSVFK+LAE+QLSHPD EGMPI  LY+  RERFLVSSQ
Sbjct: 267 HGSASQTVKTATIVLSSLTRNAQSVFKVLAEHQLSHPD-EGMPISDLYSVCRERFLVSSQ 325

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEI 285
           +TLNSHLTEFKDHELVK ++HSDGQDC +IPL +EAL+K++ EI
Sbjct: 326 ITLNSHLTEFKDHELVKIKKHSDGQDCLHIPLTAEALQKVVLEI 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437889|ref|XP_003589220.1| Origin recognition complex subunit [Medicago truncatula] gi|355478268|gb|AES59471.1| Origin recognition complex subunit [Medicago truncatula]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/285 (74%), Positives = 249/285 (87%), Gaps = 7/285 (2%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGF LLMYGFGSKKAL+EDFAS  LTEYSVVVINGYLQ+IN+KQV+I LAE+L +Q K
Sbjct: 84  LRCGFALLMYGFGSKKALIEDFASKTLTEYSVVVINGYLQTINLKQVLIALAELLCDQVK 143

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
           +KRK  SG     +QP +++S++DL   L   E++++D FVCVVIHNIDGPGLRDSETQQ
Sbjct: 144 AKRKV-SG-----RQPSSTQSIEDLLTLLYEVEVEDSDSFVCVVIHNIDGPGLRDSETQQ 197

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
           +L R+A C+HIR++ASIDHVNAPL WDK M HTQFNW W+HVPTF+PYK+EGMF+PLILA
Sbjct: 198 YLARLASCTHIRIVASIDHVNAPLFWDKNMAHTQFNWCWHHVPTFSPYKIEGMFYPLILA 257

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
           HGS++Q+ KTAAIVLQSLTPNAQSVFK+LAEYQ+SHPD EGMPI  LY+  RERFLVSSQ
Sbjct: 258 HGSASQSVKTAAIVLQSLTPNAQSVFKVLAEYQISHPD-EGMPISDLYSVCRERFLVSSQ 316

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEIN 286
           VTLNSHLTEFKDHELVKT+RHSDGQDC +IPL +EAL+K+L EI+
Sbjct: 317 VTLNSHLTEFKDHELVKTKRHSDGQDCLHIPLTTEALQKVLLEIS 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224316|ref|NP_181292.1| origin recognition complex subunit 2 [Arabidopsis thaliana] gi|2498706|sp|Q38899.1|ORC2_ARATH RecName: Full=Origin recognition complex subunit 2 gi|1113103|gb|AAC49131.1| atOrc2p [Arabidopsis thaliana] gi|3236239|gb|AAC23627.1| origin recognition complex protein [Arabidopsis thaliana] gi|17979313|gb|AAL49882.1| putative origin recognition complex protein [Arabidopsis thaliana] gi|20465531|gb|AAM20248.1| putative origin recognition complex [Arabidopsis thaliana] gi|21593764|gb|AAM65731.1| origin recognition complex protein [Arabidopsis thaliana] gi|330254322|gb|AEC09416.1| origin recognition complex subunit 2 [Arabidopsis thaliana]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/286 (73%), Positives = 247/286 (86%), Gaps = 1/286 (0%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKKAL+EDFAS +LT+YSVVVINGYL S+N+KQV++ LAE+L    K
Sbjct: 79  LRCGFGLLMYGFGSKKALVEDFASASLTDYSVVVINGYLPSVNLKQVLLALAELLSELLK 138

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
            KRK+ SG+L + Q+ F SRSMDD+ +FL G +  + D F+CVV+HNIDGP LRD E+QQ
Sbjct: 139 CKRKS-SGSLSKGQETFPSRSMDDILSFLHGPQSGDKDCFICVVVHNIDGPALRDPESQQ 197

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            L R++ CSHIR++ASIDHVNAPLLWDKKMVH QFNW W+HVPTFAPY VEG+FFPL+LA
Sbjct: 198 TLARLSSCSHIRLVASIDHVNAPLLWDKKMVHKQFNWLWHHVPTFAPYNVEGVFFPLVLA 257

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
            GS+AQTAKTAAIVLQSLTPN Q+VFKILAEYQLSHPDE+GMP D LY+ SRERF VSSQ
Sbjct: 258 QGSTAQTAKTAAIVLQSLTPNGQNVFKILAEYQLSHPDEDGMPTDDLYSASRERFFVSSQ 317

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ 287
           VTLNSHLTEFKDHELVKT+R+SDGQ+C  IPL S+A+ +LL ++NQ
Sbjct: 318 VTLNSHLTEFKDHELVKTKRNSDGQECLNIPLTSDAIRQLLLDLNQ 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823599|ref|XP_002879682.1| ATORC2/ORC2 [Arabidopsis lyrata subsp. lyrata] gi|297325521|gb|EFH55941.1| ATORC2/ORC2 [Arabidopsis lyrata subsp. lyrata]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/286 (72%), Positives = 249/286 (87%), Gaps = 1/286 (0%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKKAL+EDFAS +LTEYSV+VINGYL S+N+KQV++ LAE+L    K
Sbjct: 77  LRCGFGLLMYGFGSKKALIEDFASASLTEYSVIVINGYLPSVNLKQVLLALAELLSELLK 136

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
            KRK+ SG+L + Q+ F SRS+DD+ +FL G + ++ D F+C+V+HNIDGP LRD E+QQ
Sbjct: 137 CKRKS-SGSLSKGQETFPSRSIDDILSFLHGPQSEDKDCFICLVVHNIDGPALRDPESQQ 195

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            L R+A CSHIR++ASIDHVN+PLLWDKKMVH QFNW W+HVPTFAPY VEG+FFPL+LA
Sbjct: 196 TLARLASCSHIRIVASIDHVNSPLLWDKKMVHKQFNWLWHHVPTFAPYNVEGVFFPLVLA 255

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
            GS+AQTAKTAAIVLQSLTPNAQ+VFKILAEYQLSHPDE+GMP D LY+ SR RF VSSQ
Sbjct: 256 QGSTAQTAKTAAIVLQSLTPNAQNVFKILAEYQLSHPDEDGMPTDDLYSASRSRFFVSSQ 315

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ 287
           VTLNSHLTEFKDHELVKT+R+SDGQ+C  IPL+S+AL +LL ++NQ
Sbjct: 316 VTLNSHLTEFKDHELVKTKRNSDGQECLNIPLSSDALRQLLLDLNQ 361

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552200|ref|XP_003544457.1| PREDICTED: origin recognition complex subunit 2-like isoform 2 [Glycine max]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/285 (72%), Positives = 238/285 (83%), Gaps = 20/285 (7%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKK L+EDFAST LTEYSVVVINGYLQ+IN+KQV             
Sbjct: 83  LRCGFGLLMYGFGSKKVLIEDFASTELTEYSVVVINGYLQTINLKQVC------------ 130

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
               +P   LP++QQP NS+SMDDL  FLD +E+++ D+FVCVVIHNIDGPGLRDSETQ+
Sbjct: 131 ----SP---LPKSQQPSNSQSMDDLLTFLDQAEIEDGDFFVCVVIHNIDGPGLRDSETQR 183

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
           +L R+A C+ IR++ASIDHVNAPL WDK M HTQFNW WYHVPTFAPYKVEGMF+P+ILA
Sbjct: 184 YLARLAACARIRVVASIDHVNAPLFWDKNMAHTQFNWCWYHVPTFAPYKVEGMFYPMILA 243

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
           HGS++QT KTA IVL SLT NAQSVFKILAE+QLSHPD EGMPI  LY+  RERFLVSSQ
Sbjct: 244 HGSASQTVKTATIVLLSLTRNAQSVFKILAEHQLSHPD-EGMPISDLYSVCRERFLVSSQ 302

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEIN 286
           +TLNSHLTEFKDHELVK ++HSDGQDC +IPL +EAL+K++ EIN
Sbjct: 303 ITLNSHLTEFKDHELVKIKKHSDGQDCLHIPLTAEALQKVVLEIN 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571101|ref|NP_973624.1| origin recognition complex subunit 2 [Arabidopsis thaliana] gi|330254323|gb|AEC09417.1| origin recognition complex subunit 2 [Arabidopsis thaliana]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/286 (69%), Positives = 234/286 (81%), Gaps = 19/286 (6%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
           LRCGFGLLMYGFGSKKAL+EDFAS +LT+YSVVVINGYL S+N+KQ              
Sbjct: 79  LRCGFGLLMYGFGSKKALVEDFASASLTDYSVVVINGYLPSVNLKQ-------------- 124

Query: 62  SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
                 SG+L + Q+ F SRSMDD+ +FL G +  + D F+CVV+HNIDGP LRD E+QQ
Sbjct: 125 -----SSGSLSKGQETFPSRSMDDILSFLHGPQSGDKDCFICVVVHNIDGPALRDPESQQ 179

Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
            L R++ CSHIR++ASIDHVNAPLLWDKKMVH QFNW W+HVPTFAPY VEG+FFPL+LA
Sbjct: 180 TLARLSSCSHIRLVASIDHVNAPLLWDKKMVHKQFNWLWHHVPTFAPYNVEGVFFPLVLA 239

Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
            GS+AQTAKTAAIVLQSLTPN Q+VFKILAEYQLSHPDE+GMP D LY+ SRERF VSSQ
Sbjct: 240 QGSTAQTAKTAAIVLQSLTPNGQNVFKILAEYQLSHPDEDGMPTDDLYSASRERFFVSSQ 299

Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ 287
           VTLNSHLTEFKDHELVKT+R+SDGQ+C  IPL S+A+ +LL ++NQ
Sbjct: 300 VTLNSHLTEFKDHELVKTKRNSDGQECLNIPLTSDAIRQLLLDLNQ 345

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2040706	363	ORC2 "origin recognition compl	0.993	0.785	0.713	6.1e-110
UNIPROTKB|Q9XFD6	379	OsORC2 "Origin recognition com	0.937	0.709	0.672	3.8e-101
ZFIN|ZDB-GENE-061013-682	553	zgc:153041 "zgc:153041" [Danio	0.592	0.307	0.402	5.1e-45
UNIPROTKB|F1NDM4	569	ORC2 "Uncharacterized protein"	0.665	0.335	0.389	4.8e-44
UNIPROTKB|Q13416	577	ORC2 "Origin recognition compl	0.665	0.331	0.369	1.9e-42
RGD|1311844	576	Orc2 "origin recognition compl	0.585	0.291	0.395	4.7e-42
UNIPROTKB|A6QNM3	577	ORC2 "Origin recognition compl	0.665	0.331	0.358	1.1e-41
UNIPROTKB|F1N230	577	ORC2 "Origin recognition compl	0.665	0.331	0.358	1.1e-41
MGI|MGI:1328306	576	Orc2 "origin recognition compl	0.585	0.291	0.389	1.3e-41
UNIPROTKB|E2RSR0	577	ORC2 "Uncharacterized protein"	0.881	0.438	0.357	5.9e-41

TAIR|locus:2040706 ORC2 "origin recognition complex second largest subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 204/286 (71%), Positives = 238/286 (83%)

Query:     2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
             LRCGFGLLMYGFGSKKAL+EDFAS +LT+YSVVVINGYL S+N+KQV++ LAE+L    K
Sbjct:    79 LRCGFGLLMYGFGSKKALVEDFASASLTDYSVVVINGYLPSVNLKQVLLALAELLSELLK 138

Query:    62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
              KRK+ SG+L + Q+ F SRSMDD+ +FL G +  + D F+CVV+HNIDGP LRD E+QQ
Sbjct:   139 CKRKS-SGSLSKGQETFPSRSMDDILSFLHGPQSGDKDCFICVVVHNIDGPALRDPESQQ 197

Query:   122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
              L R++ CSHIR++ASIDHVNAPLLWDKKMVH QFNW W+HVPTFAPY VEG+FFPL+LA
Sbjct:   198 TLARLSSCSHIRLVASIDHVNAPLLWDKKMVHKQFNWLWHHVPTFAPYNVEGVFFPLVLA 257

Query:   182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
              GS+AQTAKTAAIVLQSLTPN Q+VFKILAEYQLSHPDE+GMP D LY+ SRERF VSSQ
Sbjct:   258 QGSTAQTAKTAAIVLQSLTPNGQNVFKILAEYQLSHPDEDGMPTDDLYSASRERFFVSSQ 317

Query:   242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPXXXXXXXXXXXXINQ 287
             VTLNSHLTEFKDHELVKT+R+SDGQ+C  IP            +NQ
Sbjct:   318 VTLNSHLTEFKDHELVKTKRNSDGQECLNIPLTSDAIRQLLLDLNQ 363

GO:0000808 "origin recognition complex" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006260 "DNA replication" evidence=IEA;ISS

GO:0003688 "DNA replication origin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9XFD6 OsORC2 "Origin recognition complex subunit 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 183/272 (67%), Positives = 224/272 (82%)

Query:     2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
             LRCGFGLLMYGFGSKK LLEDFAST L++++V+V+NGYL SIN+KQV++T+AE+ W Q K
Sbjct:    96 LRCGFGLLMYGFGSKKMLLEDFASTTLSDFTVIVVNGYLPSINLKQVIVTVAEIFWEQTK 155

Query:    62 SKRKTPSGNLPRAQ-QPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQ 120
              KRK  +    R+Q QPF S+S+DD+ +FL+       D  VC++IHNIDGP LRD+E+Q
Sbjct:   156 LKRKRQTAT--RSQLQPFASQSIDDIISFLNDQTSDNGDDNVCLLIHNIDGPALRDAESQ 213

Query:   121 QHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLIL 180
             Q+L +++ C  + ++AS+DHVNAPLLWDKK+VHTQF W WYHVPTFAPYKVEG+F+PLIL
Sbjct:   214 QYLAQVSCCPQVHVVASVDHVNAPLLWDKKLVHTQFKWSWYHVPTFAPYKVEGVFYPLIL 273

Query:   181 AHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSS 240
             A G  AQT KTA +VLQSLTPNAQSVF++LAEYQL+H  EEGM   +LY   RERFLVSS
Sbjct:   274 ASGGHAQTMKTALVVLQSLTPNAQSVFRVLAEYQLAHEKEEGMHFSSLYTKCRERFLVSS 333

Query:   241 QVTLNSHLTEFKDHELVKTRRHSDGQDCFYIP 272
             QVTLNSHLTEFKDH+LVK R+HSDGQDC +IP
Sbjct:   334 QVTLNSHLTEFKDHDLVKIRKHSDGQDCLHIP 365

GO:0003688 "DNA replication origin binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005656 "pre-replicative complex" evidence=ISS

GO:0005664 "nuclear origin of replication recognition complex" evidence=ISS

GO:0006267 "pre-replicative complex assembly" evidence=ISS

GO:0006270 "DNA replication initiation" evidence=ISS

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=ISS

ZFIN|ZDB-GENE-061013-682 zgc:153041 "zgc:153041" [Danio rerio (taxid:7955)]

 Score = 363 (132.8 bits), Expect = 5.1e-45, Sum P(2) = 5.1e-45
 Identities = 70/174 (40%), Positives = 108/174 (62%)

Query:   102 VCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWY 161
             V ++I+NIDGP LR    QQ LG++A   ++ ++ASIDH+NAPL+WD   + + FNW W+
Sbjct:   365 VFLIINNIDGPMLRGDRNQQALGQLAALPNMHLLASIDHINAPLVWDHAKM-SMFNWLWF 423

Query:   162 HVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDE- 220
                T+  Y  E  +   +L   + A    +   VL+SLTPNA+ +F++LAE+QL + D  
Sbjct:   424 ESTTYRSYTEETSYENSLLVQQTGALALSSLTHVLRSLTPNARGIFRLLAEFQLENKDNP 483

Query:   221 --EGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIP 272
                G+     Y   RE FLV+S +TL + LTEF+DH+L++ ++ +DG +   IP
Sbjct:   484 AYSGLSFQDFYQRCRESFLVNSDITLRTQLTEFRDHKLIRNKKGADGVEYLLIP 537

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000808 "origin recognition complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NDM4 ORC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 368 (134.6 bits), Expect = 4.8e-44, Sum P(2) = 4.8e-44
 Identities = 76/195 (38%), Positives = 116/195 (59%)

Query:    81 RSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDH 140
             RS  D   F+     +++   + V+IHN+D   LR   +QQ L +++    I +IASIDH
Sbjct:   359 RSPLDQLEFIMKRFKEDSSLELYVLIHNLDSQMLRGERSQQILAQLSSLPSIYLIASIDH 418

Query:   141 VNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLT 200
             +NAPL+WD+    + +NW WY   TF+PY  E  +   +L   S +    +   VL+SLT
Sbjct:   419 INAPLMWDQAK-QSLYNWLWYETTTFSPYVEETSYENSLLVQQSGSLALSSLTHVLRSLT 477

Query:   201 PNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELV 257
             PNA+ +F++LA+YQL + D     G+     Y   RE FLV+S +TL + LTEF+DH+L+
Sbjct:   478 PNARGIFRLLAQYQLENKDNASYPGLSFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLI 537

Query:   258 KTRRHSDGQDCFYIP 272
             +T+R +DG +   IP
Sbjct:   538 RTKRGADGVEYLLIP 552

GO:0006260 "DNA replication" evidence=IEA

GO:0000792 "heterochromatin" evidence=IEA

GO:0000939 "condensed chromosome inner kinetochore" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

UNIPROTKB|Q13416 ORC2 "Origin recognition complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 358 (131.1 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
 Identities = 72/195 (36%), Positives = 118/195 (60%)

Query:    81 RSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDH 140
             RS+ D   ++     +++   + ++IHN+D   LR  ++QQ +G+++   +I +IASIDH
Sbjct:   367 RSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYLIASIDH 426

Query:   141 VNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLT 200
             +NAPL+WD     + FNW WY   T++PY  E  +   +L   S +    +   VL+SLT
Sbjct:   427 LNAPLMWDHAK-QSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHVLRSLT 485

Query:   201 PNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELV 257
             PNA+ +F++L +YQL + D     G+     Y   RE FLV+S +TL + LTEF+DH+L+
Sbjct:   486 PNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLI 545

Query:   258 KTRRHSDGQDCFYIP 272
             +T++ +DG +   IP
Sbjct:   546 RTKKGTDGVEYLLIP 560

GO:0000792 "heterochromatin" evidence=IEA

GO:0000939 "condensed chromosome inner kinetochore" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005664 "nuclear origin of replication recognition complex" evidence=IDA

GO:0000808 "origin recognition complex" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0006270 "DNA replication initiation" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

RGD|1311844 Orc2 "origin recognition complex, subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 350 (128.3 bits), Expect = 4.7e-42, Sum P(2) = 4.7e-42
 Identities = 68/172 (39%), Positives = 107/172 (62%)

Query:   104 VVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHV 163
             ++IHN+D   LR   +QQ LG+++   ++ +IASIDH+NAPL+WD     + +NW WY  
Sbjct:   388 LLIHNLDSQMLRGDNSQQILGQLSSLRNVYLIASIDHLNAPLMWDHAK-QSLYNWLWYET 446

Query:   164 PTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSH---PDE 220
              T++PY  E  +   +L   S +    +   VL+SLTPNA+ +F++L +YQL +   P  
Sbjct:   447 TTYSPYTEETSYENSLLVKQSGSLPLSSLIHVLRSLTPNARGIFRLLMKYQLDNQDCPSY 506

Query:   221 EGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIP 272
              G+     Y   RE FLV+S +TL + LTEF+DH+L++T++ +DG +   IP
Sbjct:   507 IGLSFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIP 558

GO:0000785 "chromatin" evidence=ISO

GO:0000792 "heterochromatin" evidence=IEA;ISO

GO:0000808 "origin recognition complex" evidence=IEA;ISO

GO:0000939 "condensed chromosome inner kinetochore" evidence=IEA;ISO

GO:0003688 "DNA replication origin binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA;ISO

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|A6QNM3 ORC2 "Origin recognition complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 346 (126.9 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
 Identities = 70/195 (35%), Positives = 117/195 (60%)

Query:    81 RSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDH 140
             RS+ D   ++     +++   + ++IHN+D   LR  ++QQ +G+++   +I +IASIDH
Sbjct:   367 RSVLDQLEWITNKFKEDSSLELFLLIHNLDSQMLRGDKSQQIIGQLSSLRNIYLIASIDH 426

Query:   141 VNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLT 200
             +NAPL+WD     + +NW WY   T++ Y  E  +   +L   S +    +   VL+SLT
Sbjct:   427 LNAPLMWDHAK-QSLYNWLWYETTTYSHYTEETSYENSLLVKQSGSLPLSSLIHVLRSLT 485

Query:   201 PNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELV 257
             PNA+ +F++L +YQL + D     G+     Y   RE FLV+S +TL + LTEF+DH+L+
Sbjct:   486 PNARGIFRLLIKYQLDNQDNPSYIGLCFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLI 545

Query:   258 KTRRHSDGQDCFYIP 272
             +T++ +DG +   IP
Sbjct:   546 RTKKGTDGVEYLLIP 560

GO:0005664 "nuclear origin of replication recognition complex" evidence=ISS

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|F1N230 ORC2 "Origin recognition complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 346 (126.9 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
 Identities = 70/195 (35%), Positives = 117/195 (60%)

Query:    81 RSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDH 140
             RS+ D   ++     +++   + ++IHN+D   LR  ++QQ +G+++   +I +IASIDH
Sbjct:   367 RSVLDQLEWITNKFKEDSSLELFLLIHNLDSQMLRGDKSQQIIGQLSSLRNIYLIASIDH 426

Query:   141 VNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLT 200
             +NAPL+WD     + +NW WY   T++ Y  E  +   +L   S +    +   VL+SLT
Sbjct:   427 LNAPLMWDHAK-QSLYNWLWYETTTYSHYTEETSYENSLLVKQSGSLPLSSLIHVLRSLT 485

Query:   201 PNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELV 257
             PNA+ +F++L +YQL + D     G+     Y   RE FLV+S +TL + LTEF+DH+L+
Sbjct:   486 PNARGIFRLLIKYQLDNQDNPSYTGLCFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLI 545

Query:   258 KTRRHSDGQDCFYIP 272
             +T++ +DG +   IP
Sbjct:   546 RTKKGTDGVEYLLIP 560

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0000939 "condensed chromosome inner kinetochore" evidence=IEA

GO:0000792 "heterochromatin" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

MGI|MGI:1328306 Orc2 "origin recognition complex, subunit 2" [Mus musculus (taxid:10090)]

 Score = 348 (127.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
 Identities = 67/172 (38%), Positives = 107/172 (62%)

Query:   104 VVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHV 163
             ++IHN+D   LR   +QQ LG+++   ++ +IASIDH+NAPL+WD     + +NW WY  
Sbjct:   389 LLIHNLDSQMLRGDNSQQILGQLSSLHNVYLIASIDHLNAPLMWDHAK-QSLYNWLWYET 447

Query:   164 PTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEE-- 221
              T++PY  E  +   +L   S +    +   VL+SLTPNA+ +F++L ++QL + D    
Sbjct:   448 TTYSPYTEETSYENSLLVKQSGSLPLSSLIHVLRSLTPNARGIFRLLMKFQLDNQDSPSY 507

Query:   222 -GMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIP 272
              G+     Y   RE FLV+S +TL + LTEF+DH+L++T++ +DG +   IP
Sbjct:   508 IGLSFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIP 559

GO:0000785 "chromatin" evidence=IDA

GO:0000792 "heterochromatin" evidence=IDA

GO:0000808 "origin recognition complex" evidence=ISO

GO:0000939 "condensed chromosome inner kinetochore" evidence=IDA

GO:0003688 "DNA replication origin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2RSR0 ORC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 98/274 (35%), Positives = 157/274 (57%)

Query:     2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
             LR GF +++YG GSK+ LLE F +T L +   VVING+   I++K ++ ++ E + N   
Sbjct:   305 LRLGFNIVLYGLGSKRDLLERFRTTVLQDSIHVVINGFFPGISVKSILNSITEEVLNHMG 364

Query:    62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
             + R      L +     N         F + S L+     + ++IHN+D   LR  ++QQ
Sbjct:   365 TFRSV----LDQLDWIVNK--------FKEDSSLE-----LFLLIHNLDSQMLRGDKSQQ 407

Query:   122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
              +G+++   +I +IASIDH+NAPL+WD     + +NW WY   T++PY  E  +   +L 
Sbjct:   408 IIGQLSSLRNIYLIASIDHLNAPLMWDHAK-QSLYNWLWYETTTYSPYTEETSYENSLLV 466

Query:   182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLV 238
               S +    +   VL+SLTPNA+ +F++L +YQL + D     G+     Y   RE FLV
Sbjct:   467 KQSGSLPLSSLIHVLRSLTPNARGIFRLLIKYQLDNLDNPSYIGLSFQDFYQQCREAFLV 526

Query:   239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIP 272
             +S +TL + LTEF+DH+L++T++ +DG +   IP
Sbjct:   527 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIP 560

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000808 "origin recognition complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38899	ORC2_ARATH	No assigned EC number	0.7307	0.9930	0.7851	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014796001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (351 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00030431001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (426 aa)					•	•	•		0.774
	GSVIVG00036984001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (288 aa)				•	•	•	•		0.755
	GSVIVG00017884001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (524 aa)					•	•	•		0.711
	GSVIVG00013958001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (664 aa)					•	•	•		0.688
	GSVIVG00018925001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (592 aa)				•	•	•	•		0.637
	GSVIVG00024619001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (810 aa)				•	•	•	•		0.619
	GSVIVG00017548001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (527 aa)						•	•		0.617
	GSVIVG00036116001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (297 aa)						•	•		0.518
	GSVIVG00024137001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (490 aa)						•	•		0.516
	GSVIVG00024801001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (611 aa)				•	•	•	•		0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam04084	318	pfam04084, ORC2, Origin recognition complex subuni	2e-92
COG5575	535	COG5575, ORC2, Origin recognition complex, subunit	2e-33

>gnl|CDD|217882 pfam04084, ORC2, Origin recognition complex subunit 2

 Score =  275 bits (706), Expect = 2e-92
 Identities = 113/284 (39%), Positives = 162/284 (57%), Gaps = 23/284 (8%)

Query: 2   LRCGFGLLMYGFGSKKALLEDFASTALT-EYSVVVINGYLQSINIKQVVITLAEVLWNQC 60
           L  GF LL YG GSK+ LLEDFA   L+ +  VVV+NG+  S+NIK ++  + E+L    
Sbjct: 51  LLQGFNLLFYGLGSKRNLLEDFAKEYLSDKGPVVVVNGFFPSLNIKDILNEITELLLEAT 110

Query: 61  KSKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQ 120
             K  + S  L        S+                    + ++IHNIDGP LR+ +TQ
Sbjct: 111 DKKPNSVSEQLDFIVSYLKSQPAPP---------------KLYLIIHNIDGPSLRNEKTQ 155

Query: 121 QHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLIL 180
             L ++A   +I +IASIDH+NAPLLWD   + + FN+ W+ V TFAPY VE  F   +L
Sbjct: 156 TLLSQLASIPNIHLIASIDHINAPLLWDSSKL-SSFNFVWHDVTTFAPYTVETSFEDSLL 214

Query: 181 AHGSSAQ-TAKTAAIVLQSLTPNAQSVFKILAEYQLS-----HPDEEGMPIDTLYATSRE 234
              S     A+ A  VL+SLT NA+++FK+LAEYQL         + G+    LY   RE
Sbjct: 215 LGKSGKSLGAEGAKYVLKSLTENARNLFKLLAEYQLETGNKDGKSKPGVEFKDLYQKCRE 274

Query: 235 RFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEAL 278
            F+VSS++TL + LTEF DH+L+++++ +DG +  +IP +   L
Sbjct: 275 EFIVSSEITLRTQLTEFVDHKLIESKKDADGVEFLWIPFSKGEL 318

All DNA replication initiation is driven by a single conserved eukaryotic initiator complex termed he origin recognition complex (ORC). The ORC is a six protein complex. The function of ORC is reviewed in. Length = 318

>gnl|CDD|227862 COG5575, ORC2, Origin recognition complex, subunit 2 [DNA replication, recombination, and repair]

 Score =  127 bits (321), Expect = 2e-33
 Identities = 73/295 (24%), Positives = 133/295 (45%), Gaps = 33/295 (11%)

Query: 5   GFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKR 64
            F LL YG+GSK A L  F  +AL  + +  +NGY   ++ ++V+  + E L ++ K + 
Sbjct: 256 SFNLLFYGYGSKTAFLRKFFPSALPCFPIFYLNGYCPIMSRREVLAEIMEALRHRSKLEA 315

Query: 65  KTP-SGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHL 123
           +   S      +    S                         +HN DG  +  +  Q  L
Sbjct: 316 QDEVSKAPTIREIDSFSLGEKIGS-----------------RVHNEDGKSVMANRFQFGL 358

Query: 124 GRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILAHG 183
              +   +  ++AS+DH+   LLWD  +  + FN+ ++ + TF PY+ E   +   L  G
Sbjct: 359 LEFSSLRNFAILASVDHIGIRLLWD-DVERSSFNFVFHDLTTFEPYEEEAT-YENSLGMG 416

Query: 184 SSAQTAKTAAI--VLQSLTPNAQSVFKILAEYQLSH-----------PDEEGMPIDTLYA 230
              ++ +  A   VL+SL  N++ V K L  +QL              ++ G+ +   + 
Sbjct: 417 IHLRSTRAEASKRVLRSLPRNSRLVLKELLSHQLERMMCNADFDARQGEKVGVELGEFFE 476

Query: 231 TSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEI 285
             + +F +S++ ++ S L EF DH L+K +R+    +  ++P     LE LL ++
Sbjct: 477 KCKAKFFLSNETSVRSMLNEFIDHGLLKIKRNGSEIEICWVPYERNELEGLLDQM 531

Length = 535

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PF04084	326	ORC2: Origin recognition complex subunit 2 ; Inter	100.0
KOG2928	518	consensus Origin recognition complex, subunit 2 [R	100.0
COG5575	535	ORC2 Origin recognition complex, subunit 2 [DNA re	100.0
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.79
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.31
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	84.24
PF13730	55	HTH_36: Helix-turn-helix domain	83.91
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	83.79
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	80.03

>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []

Probab=100.00  E-value=1.1e-90  Score=654.00  Aligned_cols=260  Identities=42%  Similarity=0.700  Sum_probs=231.0

Q ss_pred             ccCCccEEEEeccchHHHHHHHHHhhcCC---CcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC
Q 023087            2 LRCGFGLLMYGFGSKKALLEDFASTALTE---YSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPF   78 (287)
Q Consensus         2 L~~GFnlL~YG~GSKr~lL~~Fa~~~l~~---~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~   78 (287)
                      |.+||||||||+||||+||++|+++++.+   +++||||||+|++++|+||++|++++....         .       .
T Consensus        51 L~~GFnlL~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvnGy~p~~~~k~il~~I~~~l~~~~---------~-------~  114 (326)
T PF04084_consen   51 LSQGFNLLFYGYGSKRKLLNDFAEKYLSDWGDGPVVVVNGYFPSLSIKDILNTIEEALLPEP---------S-------K  114 (326)
T ss_pred             HhCCCeEEEEecChHHHHHHHHHHHHhhccCCCcEEEEEccCCCCcHHHHHHHHHHHHhhhc---------c-------c
Confidence            68999999999999999999999999999   999999999999999999999999998741         0       0


Q ss_pred             CCCcHHHHHHHHhcccccC-CCceEEEEEEcCCCcCCCChhHHHHHHHHhcCCCeEEEEeecCCCCccccCccccccccc
Q 023087           79 NSRSMDDLFAFLDGSELKE-NDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFN  157 (287)
Q Consensus        79 ~~~~~~~l~~~i~~~~~~~-~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~~~I~lIaSiDhinaplLWd~~~~~~~fn  157 (287)
                      ...++.+.++.+.+..... .++++||||||||||+||++++|++||+||++|+||+||||||||||||||..+. .+||
T Consensus       115 ~~~~~~~~~~~i~~~l~~~~~~~~l~lvIHnIDg~~LR~~~~Q~~La~LA~~p~I~lIASiDhinapLLWd~~~~-~~fn  193 (326)
T PF04084_consen  115 KPKSPSEQLDFIISYLESRPSPPPLYLVIHNIDGPSLRNEKAQSLLAQLASIPNIHLIASIDHINAPLLWDSSKL-SRFN  193 (326)
T ss_pred             ccCCHHHHHHHHHHHHhccCCCCceEEEEECCCChhhcChHHHHHHHHHHcCCCeEEEEeccCCCcccccChhhH-hhCC
Confidence            1123333444443322222 3889999999999999999999999999999999999999999999999999998 9999


Q ss_pred             EEEEeCCCCCCcccccccchhh--hhcCC-cc-chhhHHHHHHhhcCHhHHHHHHHHHHHHhc--------CCCCCCCCH
Q 023087          158 WHWYHVPTFAPYKVEGMFFPLI--LAHGS-SA-QTAKTAAIVLQSLTPNAQSVFKILAEYQLS--------HPDEEGMPI  225 (287)
Q Consensus       158 f~~~d~tT~~pY~~E~~~~~~l--~~~~~-~~-~~~~g~~~VL~SLt~nar~lf~lLa~~QL~--------~~~~~gv~~  225 (287)
                      |+|||||||+||++|+++.+++  +.+++ +. .+.+|+.+||+|||+|||+||++||++||+        .....||+|
T Consensus       194 f~~hd~tT~~pY~~E~~~~~~l~~~~g~s~~~~~~~~~~~~VL~SLt~nar~lf~lL~~~QL~~~~~~~~~~~~~~gv~~  273 (326)
T PF04084_consen  194 FLWHDVTTFAPYTEETSFEDSLHSLLGKSGSRVGGLSGAKHVLKSLTPNARNLFKLLAEHQLEEAAGADKDGSEYQGVEF  273 (326)
T ss_pred             EEEEeCCCCCCHHHHhccccchhhhhcccccccccHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccccccCCCCCCCccH
Confidence            9999999999999999998865  44443 32 789999999999999999999999999999        223479999


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCHHHH
Q 023087          226 DTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEAL  278 (287)
Q Consensus       226 ~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~~l  278 (287)
                      ++||++|+++||||||++||++|+||+||+||+++|+++|+|+|+||+++++|
T Consensus       274 ~~Ly~~~~e~Fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~L~IP~~~~~m  326 (326)
T PF04084_consen  274 RDLYNKCREEFIVSSEMALRALLTEFIDHKLIKSKKDADGTEYLWIPFDKEEM  326 (326)
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHcccceeeEeCCCCCEEEEEecCcCcC
Confidence            99999999999999999999999999999999999999999999999999875

ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus

>KOG2928 consensus Origin recognition complex, subunit 2 [Replication, recombination and repair]

Probab=100.00  E-value=1e-82  Score=606.25  Aligned_cols=267  Identities=45%  Similarity=0.729  Sum_probs=245.6

Q ss_pred             ccCCccEEEEeccchHHHHHHHHHhhcCCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCC
Q 023087            2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSR   81 (287)
Q Consensus         2 L~~GFnlL~YG~GSKr~lL~~Fa~~~l~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (287)
                      |.+|||||||||||||.||++|+..++.+++++|||||+|++++|++|.+|.+.+...+.+++..               
T Consensus       246 L~~gFNiLfYG~GSKr~lLe~F~~~~L~~~~~~ving~~p~ln~K~vl~si~e~l~~~~~sk~~~---------------  310 (518)
T KOG2928|consen  246 LARGFNILFYGVGSKRALLEEFAPEALYDYTVLVINGYFPSLNVKDVLVSITELLEDAEVSKRST---------------  310 (518)
T ss_pred             HhccccEEEEecCcHHHHHHHHHHHhcccceEEEEeccCccchHHHHHHHHHHHHHHhhccCCcc---------------
Confidence            67999999999999999999999999999999999999999999999999999998866443221               


Q ss_pred             cHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcCCCeEEEEeecCCCCccccCcccccccccEEEE
Q 023087           82 SMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWY  161 (287)
Q Consensus        82 ~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~~~I~lIaSiDhinaplLWd~~~~~~~fnf~~~  161 (287)
                       .+.+-..+. .+..+...+++|||||||||+||++++|++|+.|+++++|+|||||||||+|||||..++ .+|||+||
T Consensus       311 -~~~~~~~i~-~~k~~~~~kl~LvVhNiDg~~Lr~~~~Q~~L~~Lss~~nI~liASvDHInapllWD~~~~-ssfNFv~~  387 (518)
T KOG2928|consen  311 -SRILDEIII-SFKEDSSQKLILVVHNIDGPMLRDEKFQAILARLSSIDNIALIASVDHINAPLLWDDVKL-SSFNFVWH  387 (518)
T ss_pred             -hhhhhhhhh-ccccCCCceEEEEEeccCchhhcchHHHHHHHHhhcCCceEEEEeecccCcceecchhhh-cccceEEe
Confidence             121222222 223456779999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             eCCCCCCcccccccchhhhhcCCccchhhHHHHHHhhcCHhHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHhh
Q 023087          162 HVPTFAPYKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDE---EGMPIDTLYATSRERFLV  238 (287)
Q Consensus       162 d~tT~~pY~~E~~~~~~l~~~~~~~~~~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~~---~gv~~~~L~~~~~e~fi~  238 (287)
                      |+|||+||++|++|.++++.+++.+.+.+++.+||+|||+|+|+||++|+++|+++++.   .||+|++||++|+++|+|
T Consensus       388 d~tTFepy~~Et~~~~s~l~~~s~s~~~ss~~~Vl~SLt~NSr~ifkll~~~qld~~~n~~~~Gl~~~dlf~~cr~~Fl~  467 (518)
T KOG2928|consen  388 DITTFEPYTEETMFENSLLVGASTSLTASSLKHVLRSLTVNSRGIFKLLLEYQLDNKGNTQYTGLEFRDLFQKCREDFLV  467 (518)
T ss_pred             ecccccccchhhhccchhhhcccccchhhHHHHHHHhcCcchhHHHHHHHHHHHhcCCCccccCccHHHHHHHHHHHHhh
Confidence            99999999999999999999998888899999999999999999999999999999863   599999999999999999


Q ss_pred             ccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCHHHHHHHHHHhh
Q 023087          239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEIN  286 (287)
Q Consensus       239 sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~~l~~iLe~l~  286 (287)
                      |||.+||+||+||+||+|++++|+.+|.|+||||++.+.++++||+.+
T Consensus       468 Ssd~alrSqLtEF~DHkllk~krg~dg~e~L~ip~~~~ll~~lLe~~~  515 (518)
T KOG2928|consen  468 SSDLALRSQLTEFIDHKLLKIKRGSDGVECLSIPVTNALLTELLEDDN  515 (518)
T ss_pred             cchHHHHHHHHHHhhccceeeecCCCCceEEeecccHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999865

>COG5575 ORC2 Origin recognition complex, subunit 2 [DNA replication, recombination, and repair]

Probab=100.00  E-value=3.9e-67  Score=488.95  Aligned_cols=268  Identities=26%  Similarity=0.441  Sum_probs=236.1

Q ss_pred             ccCCccEEEEeccchHHHHHHHHHhhcCCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCC
Q 023087            2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSR   81 (287)
Q Consensus         2 L~~GFnlL~YG~GSKr~lL~~Fa~~~l~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (287)
                      |.+||||||||||||+.+|++|+..+++..||+++|||+|.++.|+||.+|.+++....+......+.+.         .
T Consensus       253 L~~~FnLLFYG~GSK~~fL~~f~~~~LP~~P~~~lnGY~p~~~~r~Vl~ei~e~l~~~~~~~~~~~~~~~---------~  323 (535)
T COG5575         253 LARSFNLLFYGYGSKTAFLRKFFPSALPCFPIFYLNGYCPIMSRREVLAEIMEALRHRSKLEAQDEVSKA---------P  323 (535)
T ss_pred             HhhhceEEEEecCchHHHHHHHhHHhcCCcceeeecccCccccHHHHHHHHHHHhccchhhhhhhHhhcC---------c
Confidence            5789999999999999999999999999999999999999999999999999998654322111111111         1


Q ss_pred             cHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcCCCeEEEEeecCCCCccccCcccccccccEEEE
Q 023087           82 SMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWY  161 (287)
Q Consensus        82 ~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~~~I~lIaSiDhinaplLWd~~~~~~~fnf~~~  161 (287)
                      ++.       .........++.+++||+||+++|..++|..|+.++++.||.+|||+|||++|||||..+. ++|||++|
T Consensus       324 ~I~-------~i~~~~~~~ki~~~vHN~dg~sv~~n~Fq~~l~~~ss~rn~ai~aSvdhI~~~llwd~~~~-~sfNFVfh  395 (535)
T COG5575         324 TIR-------EIDSFSLGEKIGSRVHNEDGKSVMANRFQFGLLEFSSLRNFAILASVDHIGIRLLWDDVER-SSFNFVFH  395 (535)
T ss_pred             eEE-------eccchhhhhheeEEeecccchHHHHHHHHHHHHHHHhhcceEEEEeecccceeeehhhhhh-cccceEee
Confidence            111       0001112368999999999999999999999999999999999999999999999999997 99999999


Q ss_pred             eCCCCCCcccccccchhhhhcCC-ccchhhHHHHHHhhcCHhHHHHHHHHHHHHhcCCC-----------CCCCCHHHHH
Q 023087          162 HVPTFAPYKVEGMFFPLILAHGS-SAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPD-----------EEGMPIDTLY  229 (287)
Q Consensus       162 d~tT~~pY~~E~~~~~~l~~~~~-~~~~~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~-----------~~gv~~~~L~  229 (287)
                      |+|||+||.+|..|.+++-+|.. .+.+++|+++||+|||.|+|.+||.|+.+||++|.           ..||+++.+|
T Consensus       396 D~ttFepy~~E~T~en~l~mG~~~~S~~aea~k~Vl~slp~NSr~v~K~Ll~~Qle~M~~~~d~~~R~~ek~gVel~~ff  475 (535)
T COG5575         396 DLTTFEPYEEEATYENSLGMGIHLRSTRAEASKRVLRSLPRNSRLVLKELLSHQLERMMCNADFDARQGEKVGVELGEFF  475 (535)
T ss_pred             cccccccccchhhhhhhhhhcccccccHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhccchhhhhhccceeceeHHHHH
Confidence            99999999999999999877665 45678999999999999999999999999999973           2489999999


Q ss_pred             HHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCHHHHHHHHHHhh
Q 023087          230 ATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEIN  286 (287)
Q Consensus       230 ~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~~l~~iLe~l~  286 (287)
                      ++|..+|+||||.++|++|+||+||+|+.++|+..|.|++|+|+++.+||.+|++++
T Consensus       476 ~kc~a~f~~Sne~~~rSmL~EFidH~l~~i~rn~S~~eI~wvpy~~nele~lL~~m~  532 (535)
T COG5575         476 EKCKAKFFLSNETSVRSMLNEFIDHGLLKIKRNGSEIEICWVPYERNELEGLLDQMD  532 (535)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHhcchhheeccCCccEEEEeeccHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999875

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.79  E-value=0.0051  Score=59.00  Aligned_cols=255  Identities=16%  Similarity=0.188  Sum_probs=153.3

Q ss_pred             ccEEEEecc--chHHHHHHHHHhhcC---CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC
Q 023087            6 FGLLMYGFG--SKKALLEDFASTALT---EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNS   80 (287)
Q Consensus         6 FnlL~YG~G--SKr~lL~~Fa~~~l~---~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      -|+++||--  -|..+++.++++.-.   +..++.||+..- .+.++++..|...+....          .     +...
T Consensus        56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~-~~~~~~~~~i~~~l~~~~----------~-----~~~~  119 (394)
T PRK00411         56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID-RTRYAIFSEIARQLFGHP----------P-----PSSG  119 (394)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC-CCHHHHHHHHHHHhcCCC----------C-----CCCC
Confidence            579999874  299999998876533   356888999754 367788888877664310          0     1112


Q ss_pred             CcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHH----hcCC--CeEEEEeecCCCCccccCcccccc
Q 023087           81 RSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRI----AFCS--HIRMIASIDHVNAPLLWDKKMVHT  154 (287)
Q Consensus        81 ~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~L----a~~~--~I~lIaSiDhinaplLWd~~~~~~  154 (287)
                      .+.+++++.+..... ....+++|||-.+|-.. ++ +.+..|..|    ...+  ++.+|+..-..+.+-..+.... .
T Consensus       120 ~~~~~~~~~~~~~l~-~~~~~~viviDE~d~l~-~~-~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~-s  195 (394)
T PRK00411        120 LSFDELFDKIAEYLD-ERDRVLIVALDDINYLF-EK-EGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVK-S  195 (394)
T ss_pred             CCHHHHHHHHHHHHH-hcCCEEEEEECCHhHhh-cc-CCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHH-h
Confidence            234555555543221 24567999999999754 22 122333333    2233  5667777655554444455444 4


Q ss_pred             cccEEEEeCCCCCCcccccc----------------cchhh-------hhc----------------------CCccc--
Q 023087          155 QFNWHWYHVPTFAPYKVEGM----------------FFPLI-------LAH----------------------GSSAQ--  187 (287)
Q Consensus       155 ~fnf~~~d~tT~~pY~~E~~----------------~~~~l-------~~~----------------------~~~~~--  187 (287)
                      +|.+...   .|.||+.|-.                +.+..       ..+                      +....  
T Consensus       196 ~~~~~~i---~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~  272 (394)
T PRK00411        196 VFRPEEI---YFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTE  272 (394)
T ss_pred             cCCccee---ecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence            5554333   5788876621                00000       000                      00000  


Q ss_pred             ----------hhhHHHHHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH---HHhhc--cHHHHHHHhhhhc
Q 023087          188 ----------TAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRE---RFLVS--SQVTLNSHLTEFK  252 (287)
Q Consensus       188 ----------~~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e---~fi~s--se~~lr~~L~EF~  252 (287)
                                .......++++||.++|.+...++...-.  +...+++.++|+.-.+   .+=++  +...+...|.++.
T Consensus       273 ~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~--~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~  350 (394)
T PRK00411        273 EDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKK--GGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLD  350 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHH
Confidence                      01223457899999999999999876522  2245788888765333   22221  5688999999999


Q ss_pred             ccceEEEeeC---C-CCceEEEEeCCHHHHHHHHHHh
Q 023087          253 DHELVKTRRH---S-DGQDCFYIPLASEALEKLLSEI  285 (287)
Q Consensus       253 DH~li~~~k~---~-~G~e~l~Ip~~~~~l~~iLe~l  285 (287)
                      +.++|..++.   . +.+..+..+++.+++.+.+.+.
T Consensus       351 ~~glI~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK00411        351 MLGIINTRYSGKGGRGRTRLISLSYDPEDVLERLLED  387 (394)
T ss_pred             hcCCeEEEEecCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence            9999997653   2 2257788999999888777653

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.31  E-value=0.026  Score=53.50  Aligned_cols=232  Identities=19%  Similarity=0.248  Sum_probs=134.2

Q ss_pred             ccEEEEec-cc-hHHHHHHHHHhhc---CC----CcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCC
Q 023087            6 FGLLMYGF-GS-KKALLEDFASTAL---TE----YSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQ   76 (287)
Q Consensus         6 FnlL~YG~-GS-Kr~lL~~Fa~~~l---~~----~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~   76 (287)
                      -|+++||- |+ |..+++.|++..-   .+    ..++.||+.. ..+..+++..|.+.+.. ..       .+.+    
T Consensus        41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-~~~~~~~~~~i~~~l~~-~~-------~~~~----  107 (365)
T TIGR02928        41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-LDTLYQVLVELANQLRG-SG-------EEVP----  107 (365)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-CCCHHHHHHHHHHHHhh-cC-------CCCC----
Confidence            47999997 44 8888888876532   11    3577899875 34677888888888753 00       0001    


Q ss_pred             CCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcC--------CCeEEEEeecCCCCccccC
Q 023087           77 PFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFC--------SHIRMIASIDHVNAPLLWD  148 (287)
Q Consensus        77 ~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~--------~~I~lIaSiDhinaplLWd  148 (287)
                       ....+.+++++.+.... .....+++|||-.+|--. +  ..+..|..|...        +++.+|+..-.+..+--.+
T Consensus       108 -~~~~~~~~~~~~l~~~l-~~~~~~~vlvIDE~d~L~-~--~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~  182 (365)
T TIGR02928       108 -TTGLSTSEVFRRLYKEL-NERGDSLIIVLDEIDYLV-G--DDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLD  182 (365)
T ss_pred             -CCCCCHHHHHHHHHHHH-HhcCCeEEEEECchhhhc-c--CCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcC
Confidence             11112333333332211 114567899999999864 2  224455555443        5688888886655432234


Q ss_pred             cccccccccEEEEeCCCCCCcccccc----------------cchh---hh----h--cC--------------------
Q 023087          149 KKMVHTQFNWHWYHVPTFAPYKVEGM----------------FFPL---IL----A--HG--------------------  183 (287)
Q Consensus       149 ~~~~~~~fnf~~~d~tT~~pY~~E~~----------------~~~~---l~----~--~~--------------------  183 (287)
                      .... ++|..  ..+ .|.||+.|-.                +.+.   +.    .  .+                    
T Consensus       183 ~~~~-s~~~~--~~i-~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~  258 (365)
T TIGR02928       183 PRVK-SSLCE--EEI-IFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREG  258 (365)
T ss_pred             HHHh-ccCCc--cee-eeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence            4433 45532  222 4788876511                0011   00    0  00                    


Q ss_pred             Cccch------------hhHHHHHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH---HHHh--hccHHHHHH
Q 023087          184 SSAQT------------AKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSR---ERFL--VSSQVTLNS  246 (287)
Q Consensus       184 ~~~~~------------~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~---e~fi--~sse~~lr~  246 (287)
                      ....+            .+.....+++|+..++.++..++... +. +...+...++|+.-.   +.+=  --+...++.
T Consensus       259 ~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~-~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~  336 (365)
T TIGR02928       259 AERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLA-AN-DEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISD  336 (365)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hc-CCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence            00000            12223567999999999999887653 22 345578888877333   2222  257899999


Q ss_pred             HhhhhcccceEEEee
Q 023087          247 HLTEFKDHELVKTRR  261 (287)
Q Consensus       247 ~L~EF~DH~li~~~k  261 (287)
                      .|.++.+.++|..+.
T Consensus       337 ~l~~l~~~gli~~~~  351 (365)
T TIGR02928       337 LLNELDMLGLVEAEE  351 (365)
T ss_pred             HHHHHHhcCCeEEEE
Confidence            999999999999864

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=84.24  E-value=42  Score=32.55  Aligned_cols=250  Identities=20%  Similarity=0.207  Sum_probs=151.7

Q ss_pred             CccEEEEec-cchHHHHHHHHHhhcCC----CcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 023087            5 GFGLLMYGF-GSKKALLEDFASTALTE----YSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFN   79 (287)
Q Consensus         5 GFnlL~YG~-GSKr~lL~~Fa~~~l~~----~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~   79 (287)
                      ..|+++||- |+=+...-+|+-+.+.+    ..++-||+..- -|..+|+..|.+.+.+.                 |..
T Consensus        42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-~t~~~i~~~i~~~~~~~-----------------p~~  103 (366)
T COG1474          42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-RTPYQVLSKILNKLGKV-----------------PLT  103 (366)
T ss_pred             CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC-CCHHHHHHHHHHHcCCC-----------------CCC
Confidence            458999985 66566666666655532    23788999884 46788888888766421                 111


Q ss_pred             CCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcCC-----CeEEEEeecCCCCccccCcccccc
Q 023087           80 SRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCS-----HIRMIASIDHVNAPLLWDKKMVHT  154 (287)
Q Consensus        80 ~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~~-----~I~lIaSiDhinaplLWd~~~~~~  154 (287)
                      ..+..+.++.+.+.... ....+++|+.-+|.-.=++   +..|-.|...+     +|-+|+-.-..+..-..|.... +
T Consensus       104 g~~~~~~~~~l~~~~~~-~~~~~IvvLDEid~L~~~~---~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~-s  178 (366)
T COG1474         104 GDSSLEILKRLYDNLSK-KGKTVIVILDEVDALVDKD---GEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK-S  178 (366)
T ss_pred             CCchHHHHHHHHHHHHh-cCCeEEEEEcchhhhcccc---chHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh-h
Confidence            12234445444432222 5678999999999743333   26666665443     2346665555555545566654 5


Q ss_pred             cccEEEEeCCCCCCccccccc-----------c-----hh---hh----h--cC--------------------Cccch-
Q 023087          155 QFNWHWYHVPTFAPYKVEGMF-----------F-----PL---IL----A--HG--------------------SSAQT-  188 (287)
Q Consensus       155 ~fnf~~~d~tT~~pY~~E~~~-----------~-----~~---l~----~--~~--------------------~~~~~-  188 (287)
                      +|.-.-   =-|.||+.|=.+           .     +.   +.    .  ++                    ++..+ 
T Consensus       179 ~l~~~~---I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~  255 (366)
T COG1474         179 SLGPSE---IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSE  255 (366)
T ss_pred             ccCcce---eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCH
Confidence            555433   358899887321           0     00   00    0  00                    00000 


Q ss_pred             -----------hhHHHHHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceE
Q 023087          189 -----------AKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELV  257 (287)
Q Consensus       189 -----------~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li  257 (287)
                                 ..=...++++||.++|-+.+.+++..  .....|--|..+-..|.+-..  ++..+...++|+..=++|
T Consensus       256 ~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~--~~~~~~~ii~~L~~lgiv  331 (366)
T COG1474         256 DHVREAQEEIERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT--SQRRFSDIISELEGLGIV  331 (366)
T ss_pred             HHHHHHHHHhhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc--hHHHHHHHHHHHHhcCeE
Confidence                       11123689999999999999998887  222344446666666666555  888999999999999999


Q ss_pred             EEeeCCCC----ceEEEEeCCHHHHHHHHHH
Q 023087          258 KTRRHSDG----QDCFYIPLASEALEKLLSE  284 (287)
Q Consensus       258 ~~~k~~~G----~e~l~Ip~~~~~l~~iLe~  284 (287)
                      ..+....|    +..+.+-.+.+.+.+.+++
T Consensus       332 ~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~  362 (366)
T COG1474         332 SASLISRGERGRTREISLDLDPEVIREILKL  362 (366)
T ss_pred             EeeeccCCCcCceeEeeecCCHHHHHHHHHh
Confidence            88755433    3556666666666666554

>PF13730 HTH_36: Helix-turn-helix domain

Probab=83.91  E-value=2.8  Score=28.65  Aligned_cols=52  Identities=27%  Similarity=0.424  Sum_probs=37.8

Q ss_pred             hcCHhHHHHHHHHHHHHhcCCCCCC--CCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceE
Q 023087          198 SLTPNAQSVFKILAEYQLSHPDEEG--MPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELV  257 (287)
Q Consensus       198 SLt~nar~lf~lLa~~QL~~~~~~g--v~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li  257 (287)
                      .|+++++.||-.|+.+-  + +..+  .+.+.|-+.|     =-|+.+++..++|+.|+++|
T Consensus         2 ~Ls~~~~~v~~~l~~~~--~-~~~~~~pS~~~la~~~-----g~s~~Tv~~~i~~L~~~G~I   55 (55)
T PF13730_consen    2 NLSPTAKLVYLYLASYA--N-KNGGCFPSQETLAKDL-----GVSRRTVQRAIKELEEKGLI   55 (55)
T ss_pred             CCCHHHHHHHHHHHHhc--C-CCCCCCcCHHHHHHHH-----CcCHHHHHHHHHHHHHCcCC
Confidence            58999999999999885  1 1223  1345554444     23699999999999999875

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=83.79  E-value=4.7  Score=31.74  Aligned_cols=110  Identities=21%  Similarity=0.175  Sum_probs=71.8

Q ss_pred             cEEEEec-cc-hHHHHHHHHHhhcC------CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC
Q 023087            7 GLLMYGF-GS-KKALLEDFASTALT------EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPF   78 (287)
Q Consensus         7 nlL~YG~-GS-Kr~lL~~Fa~~~l~------~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~   78 (287)
                      .++++|- || |..+++.+++.+..      +.+++.++.-.+. +.+++...|.+.+.....                 
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~-----------------   67 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLK-----------------   67 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSS-----------------
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCcccc-----------------
Confidence            4555653 33 99999999988765      5667777777665 899999999988754210                 


Q ss_pred             CCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcCCCeEEEEee
Q 023087           79 NSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASI  138 (287)
Q Consensus        79 ~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~~~I~lIaSi  138 (287)
                      ...+.+++.+.+......  ....+|||-++|--.  +......|..|+..+++.+|-+-
T Consensus        68 ~~~~~~~l~~~~~~~l~~--~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G  123 (131)
T PF13401_consen   68 SRQTSDELRSLLIDALDR--RRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVG  123 (131)
T ss_dssp             STS-HHHHHHHHHHHHHH--CTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHh--cCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEE
Confidence            012334444444332111  223899999999843  47788888888888899887654

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=80.03  E-value=18  Score=34.31  Aligned_cols=137  Identities=18%  Similarity=0.265  Sum_probs=87.1

Q ss_pred             cEEEEecc--chHHHHHHHHHhhcCC-------CcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCC
Q 023087            7 GLLMYGFG--SKKALLEDFASTALTE-------YSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQP   77 (287)
Q Consensus         7 nlL~YG~G--SKr~lL~~Fa~~~l~~-------~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~   77 (287)
                      |+|++|=.  -|..++++|.+.+-..       .|||+|.. -|+-+.+.+...|.+.+.-..          .+.    
T Consensus        63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~-P~~p~~~~~Y~~IL~~lgaP~----------~~~----  127 (302)
T PF05621_consen   63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM-PPEPDERRFYSAILEALGAPY----------RPR----  127 (302)
T ss_pred             ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec-CCCCChHHHHHHHHHHhCccc----------CCC----
Confidence            67888743  4999999999877532       26888883 577888999999998875421          000    


Q ss_pred             CCCCcHHH-HHHHHhcccccCCCceEEEE--EEcC-CCcCCCChhHHHHHHHHhcCCCeEEE--EeecCCCCccccCccc
Q 023087           78 FNSRSMDD-LFAFLDGSELKENDYFVCVV--IHNI-DGPGLRDSETQQHLGRIAFCSHIRMI--ASIDHVNAPLLWDKKM  151 (287)
Q Consensus        78 ~~~~~~~~-l~~~i~~~~~~~~~~~l~lv--IHnI-Dg~~LR~~~~q~~La~La~~~~I~lI--aSiDhinaplLWd~~~  151 (287)
                      ......+. .+..++.     -..++.+|  |||+ .|..-+...+-.+|..|++-=+|-+|  ++-|-.++ +-=|...
T Consensus       128 ~~~~~~~~~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a-l~~D~QL  201 (302)
T PF05621_consen  128 DRVAKLEQQVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA-LRTDPQL  201 (302)
T ss_pred             CCHHHHHHHHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH-hccCHHH
Confidence            01111222 2344443     46678888  9995 88888778888889999875555555  45555553 4445555


Q ss_pred             ccccccEEEEeCCCCC
Q 023087          152 VHTQFNWHWYHVPTFA  167 (287)
Q Consensus       152 ~~~~fnf~~~d~tT~~  167 (287)
                      . .+|.  -+.++.|.
T Consensus       202 a-~RF~--~~~Lp~W~  214 (302)
T PF05621_consen  202 A-SRFE--PFELPRWE  214 (302)
T ss_pred             H-hccC--CccCCCCC
Confidence            4 5543  34445554

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.08
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.07
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.62
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.02
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	86.07
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	82.37

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.08  E-value=0.077  Score=48.12  Aligned_cols=255  Identities=17%  Similarity=0.155  Sum_probs=153.6

Q ss_pred             CCccEEEEecc--chHHHHHHHHHhhcC-------CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 023087            4 CGFGLLMYGFG--SKKALLEDFASTALT-------EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRA   74 (287)
Q Consensus         4 ~GFnlL~YG~G--SKr~lL~~Fa~~~l~-------~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~   74 (287)
                      .+-++++||-.  -|..+++.+++....       +.+++.||+... .+..+++..+...+...           .   
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~l~~~-----------~---  107 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR-ETPYRVASAIAEAVGVR-----------V---  107 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS-CSHHHHHHHHHHHHSCC-----------C---
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC-CCHHHHHHHHHHHhCCC-----------C---
Confidence            45689999864  388999998876533       456788998653 46788888887766220           0   


Q ss_pred             CCCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhc-------CCCeEEEEeecCCCCcccc
Q 023087           75 QQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAF-------CSHIRMIASIDHVNAPLLW  147 (287)
Q Consensus        75 ~~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~-------~~~I~lIaSiDhinaplLW  147 (287)
                        +....+..++.+.+..... ....+.+|+|-.+|.-.-.. ..|..|..|..       .+++.+|++......+-..
T Consensus       108 --~~~~~~~~~~~~~l~~~l~-~~~~~~vlilDEi~~l~~~~-~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l  183 (387)
T 2v1u_A          108 --PFTGLSVGEVYERLVKRLS-RLRGIYIIVLDEIDFLPKRP-GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENL  183 (387)
T ss_dssp             --CSSCCCHHHHHHHHHHHHT-TSCSEEEEEEETTTHHHHST-THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSS
T ss_pred             --CCCCCCHHHHHHHHHHHHh-ccCCeEEEEEccHhhhcccC-CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhh
Confidence              1112234444444433221 24568899999998743211 15677766643       4578888888766433334


Q ss_pred             CcccccccccEEEEeCCCCCCccccccc----------------chhh---h---hc---CC------------------
Q 023087          148 DKKMVHTQFNWHWYHVPTFAPYKVEGMF----------------FPLI---L---AH---GS------------------  184 (287)
Q Consensus       148 d~~~~~~~fnf~~~d~tT~~pY~~E~~~----------------~~~l---~---~~---~~------------------  184 (287)
                      +.... .+|+...   -.+.||+.|-..                .+..   +   ..   +.                  
T Consensus       184 ~~~l~-~r~~~~~---i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~  259 (387)
T 2v1u_A          184 EPRVK-SSLGEVE---LVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERR  259 (387)
T ss_dssp             CHHHH-TTTTSEE---CCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHH-hcCCCeE---EeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHc
Confidence            55555 6776532   346677655210                0000   0   00   10                  


Q ss_pred             --ccch------------hhHHHHHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH---H--hhccHHHHH
Q 023087          185 --SAQT------------AKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRER---F--LVSSQVTLN  245 (287)
Q Consensus       185 --~~~~------------~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~---f--i~sse~~lr  245 (287)
                        ...+            ......++++|++.++.++..++...  . ++.++...++|+..++-   .  -..+...+.
T Consensus       260 ~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (387)
T 2v1u_A          260 REERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLE--D-GGRPASTGEIYERYKELTSTLGLEHVTLRRVS  336 (387)
T ss_dssp             TCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHS--S-SSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHh--c-CCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence              0000            11233467889999999988887653  2 23467788777655441   1  123568999


Q ss_pred             HHhhhhcccceEEEeeC---CCC-ceEEEEeCCHHHHHHHHHH
Q 023087          246 SHLTEFKDHELVKTRRH---SDG-QDCFYIPLASEALEKLLSE  284 (287)
Q Consensus       246 ~~L~EF~DH~li~~~k~---~~G-~e~l~Ip~~~~~l~~iLe~  284 (287)
                      ..|.++.+.++|..+..   ..| ...+.+.++.+++.+.|++
T Consensus       337 ~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~i~~~l~~  379 (387)
T 2v1u_A          337 GIISELDMLGIVKSRVVSRGRYGKTREVSLDADRLAVENALSE  379 (387)
T ss_dssp             HHHHHHHHTTSEEEEEEECGGGCEEEEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCeEEEeecCCCCCceeEEEecCCHHHHHHHHhc
Confidence            99999999999998542   234 3457789999999998875

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.07  E-value=1.3  Score=40.06  Aligned_cols=248  Identities=15%  Similarity=0.160  Sum_probs=137.0

Q ss_pred             CccEEEEecc-c-hHHHHHHHHHhhcC---------CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 023087            5 GFGLLMYGFG-S-KKALLEDFASTALT---------EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPR   73 (287)
Q Consensus         5 GFnlL~YG~G-S-Kr~lL~~Fa~~~l~---------~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~   73 (287)
                      +-++++||-. + |..+++.++.....         +.+++.+|+.....+..+++..+...+.+..          .+ 
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~----------~~-  113 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFS----------VP-  113 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSC----------CC-
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCC----------CC-
Confidence            4479999863 3 88999998876422         5678889987654478888888887765421          00 


Q ss_pred             CCCCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHH-HHHHhcC-CCeEEEEeecCCCCccccCccc
Q 023087           74 AQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQH-LGRIAFC-SHIRMIASIDHVNAPLLWDKKM  151 (287)
Q Consensus        74 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~-La~La~~-~~I~lIaSiDhinaplLWd~~~  151 (287)
                          ....+..++++.+.....  ...+ +|+|.++|.-.-.  ..+.. |..|... +++.+|++.......-..+...
T Consensus       114 ----~~~~~~~~~~~~l~~~l~--~~~~-vlilDEi~~l~~~--~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l  184 (384)
T 2qby_B          114 ----KHGINLGEYIDKIKNGTR--NIRA-IIYLDEVDTLVKR--RGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRV  184 (384)
T ss_dssp             ----SSSSCTHHHHHHHHHHHS--SSCE-EEEEETTHHHHHS--TTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHH
T ss_pred             ----CCCCCHHHHHHHHHHHhc--cCCC-EEEEECHHHhccC--CCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHH
Confidence                011122334444332211  1223 8889988864221  12455 6666655 7999999987764333335554


Q ss_pred             ccccccEEEEeCCCCCCccccccc----------------chhh---h---hc---CC------------------ccch
Q 023087          152 VHTQFNWHWYHVPTFAPYKVEGMF----------------FPLI---L---AH---GS------------------SAQT  188 (287)
Q Consensus       152 ~~~~fnf~~~d~tT~~pY~~E~~~----------------~~~l---~---~~---~~------------------~~~~  188 (287)
                      . .+|.. .+   .+.||+.|-..                .+..   +   .+   +.                  ...+
T Consensus       185 ~-sr~~~-~i---~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~  259 (384)
T 2qby_B          185 L-SSLGP-SV---IFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIR  259 (384)
T ss_dssp             H-HTCCC-EE---EECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCC
T ss_pred             H-hcCCC-eE---EECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence            4 56654 33   35566544210                0000   0   00   00                  0011


Q ss_pred             hhHHHH----HH--------hhcCHhHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHH--hhccHHHHHHHhhhhcc
Q 023087          189 AKTAAI----VL--------QSLTPNAQSVFKILAEYQLSHPDEE-GMPIDTLYATSRERF--LVSSQVTLNSHLTEFKD  253 (287)
Q Consensus       189 ~~g~~~----VL--------~SLt~nar~lf~lLa~~QL~~~~~~-gv~~~~L~~~~~e~f--i~sse~~lr~~L~EF~D  253 (287)
                      .+-+..    +.        ++|++.++.++..++. .     .. | +....|....+..  -..+...+...|.++.+
T Consensus       260 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~-~-----~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~  332 (384)
T 2qby_B          260 KEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIE-S-----EDVM-SAHKMYTDLCNKFKQKPLSYRRFSDIISELDM  332 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHT-C-----CBHH-HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHH-h-----cccC-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence            111111    22        3455666666665554 1     11 1 2223333333322  12467889999999999


Q ss_pred             cceEEEeeC---CCC-ceEEEEeCCHHHHHHHHHH
Q 023087          254 HELVKTRRH---SDG-QDCFYIPLASEALEKLLSE  284 (287)
Q Consensus       254 H~li~~~k~---~~G-~e~l~Ip~~~~~l~~iLe~  284 (287)
                      .++|..+..   ..| ...+...++.+++.+.|++
T Consensus       333 ~gli~~~~~~~g~~g~~~~~~l~~~~~~v~~~l~~  367 (384)
T 2qby_B          333 FGIVKIRIINRGRAGGVKKYALVEDKEKVLRALNE  367 (384)
T ss_dssp             TTSEEEEEECCTTTTCCEEEEEESSSHHHHHHHHH
T ss_pred             CCCEEEEeccCCCCCceEEEEecCCHHHHHHHHHH
Confidence            999987542   223 3468889999998888775

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.62  E-value=1.2  Score=39.96  Aligned_cols=256  Identities=18%  Similarity=0.209  Sum_probs=138.0

Q ss_pred             CccEEEEecc--chHHHHHHHHHhhcC----CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC
Q 023087            5 GFGLLMYGFG--SKKALLEDFASTALT----EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPF   78 (287)
Q Consensus         5 GFnlL~YG~G--SKr~lL~~Fa~~~l~----~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~   78 (287)
                      |-++++||-.  -|..+++.++...-.    +.+++.+|+... .+..+++..+...+..           ..     +.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~i~~~l~~-----------~~-----~~  107 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI-DTPYRVLADLLESLDV-----------KV-----PF  107 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH-CSHHHHHHHHTTTTSC-----------CC-----CS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC-CCHHHHHHHHHHHhCC-----------CC-----CC
Confidence            5689999863  399999999976543    567888997643 2556666655433210           00     01


Q ss_pred             CCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCC-ChhHHHHHHHHh---cCCCeEEEEeecCCCCccccCcccccc
Q 023087           79 NSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLR-DSETQQHLGRIA---FCSHIRMIASIDHVNAPLLWDKKMVHT  154 (287)
Q Consensus        79 ~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR-~~~~q~~La~La---~~~~I~lIaSiDhinaplLWd~~~~~~  154 (287)
                      ...+..++.+.+..... ....+.+|+|-.+|.-.-. +......|..+.   .-.++.+|++.-.....-..+.... +
T Consensus       108 ~~~~~~~~~~~l~~~l~-~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~-~  185 (386)
T 2qby_A          108 TGLSIAELYRRLVKAVR-DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVK-S  185 (386)
T ss_dssp             SSCCHHHHHHHHHHHHH-TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHH-H
T ss_pred             CCCCHHHHHHHHHHHHh-ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHh-c
Confidence            11233444444332211 1344788998888764211 123333333333   3447888888765543222344433 4


Q ss_pred             cccEEEEeCCCCCCcccccc----------------cchh---hh---hc---CC-c-------------------cch-
Q 023087          155 QFNWHWYHVPTFAPYKVEGM----------------FFPL---IL---AH---GS-S-------------------AQT-  188 (287)
Q Consensus       155 ~fnf~~~d~tT~~pY~~E~~----------------~~~~---l~---~~---~~-~-------------------~~~-  188 (287)
                      +|....+   .+.||+.|-.                +.+.   .+   ..   +. +                   ..+ 
T Consensus       186 r~~~~~i---~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~  262 (386)
T 2qby_A          186 SLSEEEI---IFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKE  262 (386)
T ss_dssp             TTTTEEE---EECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred             cCCCeeE---EeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCH
Confidence            5543333   3445554411                0000   00   00   10 0                   000 


Q ss_pred             -----------hhHHHHHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH---HH--hhccHHHHHHHhhhhc
Q 023087          189 -----------AKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRE---RF--LVSSQVTLNSHLTEFK  252 (287)
Q Consensus       189 -----------~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e---~f--i~sse~~lr~~L~EF~  252 (287)
                                 .......++.+|+.++.++..++...-.  +...+...++|+.-.+   ..  -.-+...+...|.++.
T Consensus       263 ~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~--g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~  340 (386)
T 2qby_A          263 EYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSE--ENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELD  340 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-------CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhc--CCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence                       0123345678999999999999865311  2234567766554333   22  1124588999999999


Q ss_pred             ccceEEEee---CCCC-ceEEEEeCCHHHHHHHHHH
Q 023087          253 DHELVKTRR---HSDG-QDCFYIPLASEALEKLLSE  284 (287)
Q Consensus       253 DH~li~~~k---~~~G-~e~l~Ip~~~~~l~~iLe~  284 (287)
                      +.++|..+.   +..| ...+....+.+++.+.|++
T Consensus       341 ~~gli~~~~~~~~~~g~y~~~~l~~~~~~v~~~l~~  376 (386)
T 2qby_A          341 MVGILTAKVVNRGRYGKTKEIGLAVDKNIIVRSLIE  376 (386)
T ss_dssp             HHTSEEEEECCCTTSCCCEEEEESSCSHHHHHHHHH
T ss_pred             hCCCEEEEeecCCCCCCeEEEEeCCCHHHHHHHHhc
Confidence            999997743   2334 2457788899999988876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.02  E-value=3.3  Score=37.26  Aligned_cols=252  Identities=15%  Similarity=0.168  Sum_probs=145.1

Q ss_pred             cEEEEec-cc-hHHHHHHHHHhhcCC--CcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCc
Q 023087            7 GLLMYGF-GS-KKALLEDFASTALTE--YSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRS   82 (287)
Q Consensus         7 nlL~YG~-GS-Kr~lL~~Fa~~~l~~--~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ++++||- |+ |..+++.++...-..  ..++.+|+.. ..+..+++..+...+...           .+     ....+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~l~~~-----------~~-----~~~~~  108 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI-YRNFTAIIGEIARSLNIP-----------FP-----RRGLS  108 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT-CCSHHHHHHHHHHHTTCC-----------CC-----SSCCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc-CCCHHHHHHHHHHHhCcc-----------CC-----CCCCC
Confidence            7999974 22 999999999776553  5678899743 456778887776654210           00     01122


Q ss_pred             HHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcC------CCeEEEEeecCCCCccccCcccccccc
Q 023087           83 MDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFC------SHIRMIASIDHVNAPLLWDKKMVHTQF  156 (287)
Q Consensus        83 ~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~------~~I~lIaSiDhinaplLWd~~~~~~~f  156 (287)
                      ..++.+.+...... ...+.+|+|-.+|.-   ++..+..|..+...      .++.+|++......+-.++.... ++|
T Consensus       109 ~~~~~~~l~~~l~~-~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~-~r~  183 (389)
T 1fnn_A          109 RDEFLALLVEHLRE-RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTR-GIM  183 (389)
T ss_dssp             HHHHHHHHHHHHHH-TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHH-HHH
T ss_pred             HHHHHHHHHHHHhh-cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhh-hcC
Confidence            34444444322111 345788999988875   66777777666542      48899988655432223444444 556


Q ss_pred             cEEEEeCCCCCCcccccc----------------cchh----hh--h---------cCC--------------------c
Q 023087          157 NWHWYHVPTFAPYKVEGM----------------FFPL----IL--A---------HGS--------------------S  185 (287)
Q Consensus       157 nf~~~d~tT~~pY~~E~~----------------~~~~----l~--~---------~~~--------------------~  185 (287)
                      +...   -.|.||+.|-.                +.+.    +.  .         .+.                    .
T Consensus       184 ~~~~---i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~  260 (389)
T 1fnn_A          184 GKYV---IRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRK  260 (389)
T ss_dssp             TTCE---EECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCce---EEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            5422   23556665411                1010    00  1         110                    0


Q ss_pred             cchh------------hHHHHHHhhcCHhHHHHHHHHHHHHh-cCCCCCCCCHHHHHHHHHHH---H--hhccHHHHHHH
Q 023087          186 AQTA------------KTAAIVLQSLTPNAQSVFKILAEYQL-SHPDEEGMPIDTLYATSRER---F--LVSSQVTLNSH  247 (287)
Q Consensus       186 ~~~~------------~g~~~VL~SLt~nar~lf~lLa~~QL-~~~~~~gv~~~~L~~~~~e~---f--i~sse~~lr~~  247 (287)
                      ....            .-+..++++|+++.+.+...++...- ++.  ..+...++++...+-   .  ---+...+...
T Consensus       261 ~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  338 (389)
T 1fnn_A          261 HIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHT--PYITFGDAEESYKIVCEEYGERPRVHSQLWSY  338 (389)
T ss_dssp             SCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCS--SCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccC--CCccHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence            0000            11234689999999999998887642 121  156777777654441   0  11267899999


Q ss_pred             hhhhcccceEEEeeC-----CCC-ceEEEEeCCHHHHH-HHHHHh
Q 023087          248 LTEFKDHELVKTRRH-----SDG-QDCFYIPLASEALE-KLLSEI  285 (287)
Q Consensus       248 L~EF~DH~li~~~k~-----~~G-~e~l~Ip~~~~~l~-~iLe~l  285 (287)
                      |.++.+.++|.....     ..| ...+.+..+.+++. .+++++
T Consensus       339 l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~  383 (389)
T 1fnn_A          339 LNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKL  383 (389)
T ss_dssp             HHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHH
T ss_pred             HHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHH
Confidence            999999999988653     123 34566776666554 455554

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=86.07  E-value=1.2  Score=31.80  Aligned_cols=66  Identities=20%  Similarity=0.286  Sum_probs=52.5

Q ss_pred             cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEE
Q 023087          199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCF  269 (287)
Q Consensus       199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l  269 (287)
                      +|+....|+..|.+.     +...++..+|++.++++..--|..++...|..|.+.++|....+.+|.-.+
T Consensus        15 ~t~~r~~IL~~l~~~-----~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y   80 (83)
T 2fu4_A           15 VTLPRLKILEVLQEP-----DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF   80 (83)
T ss_dssp             CCHHHHHHHHHHTSG-----GGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred             cCHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence            688888888877543     114588999999999987767999999999999999999887765555444

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=82.37  E-value=6.9  Score=35.45  Aligned_cols=87  Identities=17%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             hhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH---HHh-h--ccHHHHHHHhhhhcccceEEEeeC---CCC-c
Q 023087          197 QSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRE---RFL-V--SSQVTLNSHLTEFKDHELVKTRRH---SDG-Q  266 (287)
Q Consensus       197 ~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e---~fi-~--sse~~lr~~L~EF~DH~li~~~k~---~~G-~  266 (287)
                      ..||+..+.++..++..-- . +...++..++|+...+   +.+ .  -++..+...|.++.++++|.....   ..| .
T Consensus       304 ~~l~~~~~~~l~aia~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~  381 (412)
T 1w5s_A          304 EALSIHELIILRLIAEATL-G-GMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRT  381 (412)
T ss_dssp             SSSCHHHHHHHHHHHHHHH-T-TCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------C
T ss_pred             HcCCHHHHHHHHHHHHHHh-c-CCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCce
Confidence            5789999999998886431 1 2235667777765544   111 1  246778899999999999987542   222 2


Q ss_pred             eEEEEe--CCHHHHHHHHHHh
Q 023087          267 DCFYIP--LASEALEKLLSEI  285 (287)
Q Consensus       267 e~l~Ip--~~~~~l~~iLe~l  285 (287)
                      ..+.+.  ++.+++.+.|+++
T Consensus       382 ~~~~l~~~~~~~~~~~~~~~~  402 (412)
T 1w5s_A          382 TLFRLAPHLPADRLIEVVDNI  402 (412)
T ss_dssp             CEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEeCCCCCHHHHHHHHHHH
Confidence            357788  8999998888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1w5sa1	110	CDC6-like protein APE0152, C-terminal domain {Aero	92.92
d1fnna1	112	CDC6, C-terminal domain {Archaeon Pyrobaculum aero	92.56
d1stza1	87	Heat-inducible transcription repressor HrcA, N-ter	85.47
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	83.22
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	81.3

>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Helicase DNA-binding domain
domain: CDC6-like protein APE0152, C-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.92  E-value=0.24  Score=36.98  Aligned_cols=89  Identities=17%  Similarity=0.245  Sum_probs=61.4

Q ss_pred             HHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HHhh--ccHHHHHHHhhhhcccceEEEeeCCC----
Q 023087          195 VLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRE----RFLV--SSQVTLNSHLTEFKDHELVKTRRHSD----  264 (287)
Q Consensus       195 VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e----~fi~--sse~~lr~~L~EF~DH~li~~~k~~~----  264 (287)
                      .+++||..++-+...++..-...  ...+...++|+.=.+    ++=+  -+-..|..+|+|+-+-++|..+....    
T Consensus         3 ~l~~L~~H~~lvL~~I~~~~~~~--~~~~~tGei~~~Y~ev~c~~~~~~P~~~t~~~~~l~~Le~lGiI~~r~~~~G~rG   80 (110)
T d1w5sa1           3 ELEALSIHELIILRLIAEATLGG--MEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRG   80 (110)
T ss_dssp             SSSSSCHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC------
T ss_pred             hhhccCHhHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCCeEEEeccCCCCC
Confidence            36899999999999988843222  244555444443332    2222  48999999999999999998764322    


Q ss_pred             CceEEEEe--CCHHHHHHHHHHh
Q 023087          265 GQDCFYIP--LASEALEKLLSEI  285 (287)
Q Consensus       265 G~e~l~Ip--~~~~~l~~iLe~l  285 (287)
                      .+..+++|  .+.+.++++++++
T Consensus        81 rt~~isl~~~~p~d~~~~~~~~~  103 (110)
T d1w5sa1          81 RTTLFRLAPHLPADRLIEVVDNI  103 (110)
T ss_dssp             -CCEEEECTTSCHHHHHHHHHHH
T ss_pred             CeeEEeeCCCCchHHHHHHHHHH
Confidence            24677766  6788888888876

>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Helicase DNA-binding domain
domain: CDC6, C-terminal domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.56  E-value=0.31  Score=36.27  Aligned_cols=91  Identities=15%  Similarity=0.172  Sum_probs=62.1

Q ss_pred             HHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHH---HHH-HHHH-HhhccHHHHHHHhhhhcccceEEEeeCC-----
Q 023087          194 IVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTL---YAT-SRER-FLVSSQVTLNSHLTEFKDHELVKTRRHS-----  263 (287)
Q Consensus       194 ~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L---~~~-~~e~-fi~sse~~lr~~L~EF~DH~li~~~k~~-----  263 (287)
                      -++++||..+|-+...|+...-.+. ...+.-.++   |.. |.+. .=.-+...|..+|+|+-..++|..+...     
T Consensus         4 e~i~~Lp~h~klvL~ai~~~~~~~~-~~~ittgevy~~Y~~lc~~~~~~pls~rr~~~~l~~Le~lGiI~~r~~~~g~G~   82 (112)
T d1fnna1           4 EVLIGLPLHEKLFLLAIVRSLKISH-TPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGV   82 (112)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHC-SSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC------
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCC-CCCccHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHhCCCeeeeecccCCCC
Confidence            4799999999999888876543332 234554444   333 3221 1123688999999999999999876531     


Q ss_pred             -CCceEEEEeC-CHHHHHHHHHHh
Q 023087          264 -DGQDCFYIPL-ASEALEKLLSEI  285 (287)
Q Consensus       264 -~G~e~l~Ip~-~~~~l~~iLe~l  285 (287)
                       +-+..+++|. +.+.+++.++++
T Consensus        83 rGrt~~Isl~~~~~~~l~~~i~~~  106 (112)
T d1fnna1          83 RGRTTLISIGTEPLDTLEAVITKL  106 (112)
T ss_dssp             ---CEEEECCSSCHHHHHHHHHHH
T ss_pred             CCcceEEeecCChHHHHHHHHHHH
Confidence             2256899999 577888888875

>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-inducible transcription repressor HrcA, N-terminal domain
domain: Heat-inducible transcription repressor HrcA, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.47  E-value=0.49  Score=33.69  Aligned_cols=69  Identities=13%  Similarity=0.182  Sum_probs=53.1

Q ss_pred             cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCHH
Q 023087          199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASE  276 (287)
Q Consensus       199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~  276 (287)
                      ||++++.||+.|.+..++..  ..+..+++-+.+   -+--|..++|+.|.++-+.++|.....+.|    .||=+++
T Consensus         2 Lt~Rq~~IL~~Ive~y~~~g--~Pv~s~~i~~~~---~l~~S~aTIRn~m~~LE~~G~l~~~h~s~G----riPT~~g   70 (87)
T d1stza1           2 LNDRQRKVLYCIVREYIENK--KPVSSQRVLEVS---NIEFSSATIRNDMKKLEYLGYIYQPHTSAG----RIPTDKG   70 (87)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC--SCBCHHHHHHHS---CCCSCHHHHHHHHHHHHHTTSEECCSSCSC----BEECHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcC--CccCHHHHHHHh---CCCCCHHHHHHHHHHHHHCCcccCCCCCCC----CcccHHH
Confidence            79999999999999988864  446677764331   244599999999999999999977555566    4676655

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=83.22  E-value=1.6  Score=29.42  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=49.2

Q ss_pred             hhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeC
Q 023087          197 QSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRH  262 (287)
Q Consensus       197 ~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~  262 (287)
                      ++||++++.++..|.++..++.  ...+++++-+    .|=..|..+.+.+|+-+.+=+.|....+
T Consensus         1 ~~LT~rQ~~vL~~I~~~~~~~G--~~Ps~rei~~----~~g~~S~stv~~~l~~Le~kG~I~r~~~   60 (71)
T d1jhfa1           1 KALTARQQEVFDLIRDHISQTG--MPPTRAEIAQ----RLGFRSPNAAEEHLKALARKGVIEIVSG   60 (71)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHS--SCCCHHHHHH----HTTCSSHHHHHHHHHHHHHTTSEEECSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHhC--CCCCHHHHHH----HcCCCCHHHHHHHHHHHHHCcCeecCCC
Confidence            4799999999999999998764  3357888743    4556799999999999999999987543

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.30  E-value=0.98  Score=33.03  Aligned_cols=82  Identities=13%  Similarity=0.222  Sum_probs=53.9

Q ss_pred             hhHHHHHHhhcCHhHH-HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCce
Q 023087          189 AKTAAIVLQSLTPNAQ-SVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD  267 (287)
Q Consensus       189 ~~g~~~VL~SLt~nar-~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e  267 (287)
                      ...+.-++++|....| +|+..|+..       +++...+|-+.     +=-+..++-.+|+.+.+.++|..+|  +|..
T Consensus        18 ~~~~~~~~kaLadp~Rl~Il~~L~~~-------~~~~v~ela~~-----l~~s~s~vS~HL~~L~~aGlv~~~r--~G~~   83 (108)
T d1u2wa1          18 ISGVSQILKAIADENRAKITYALCQD-------EELCVCDIANI-----LGVTIANASHHLRTLYKQGVVNFRK--EGKL   83 (108)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHHHS-------SCEEHHHHHHH-----HTCCHHHHHHHHHHHHHTTSEEEC------C
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhC-------CCccHHHHHHH-----HccChhHHHHHHHHHHHCCeeEEEE--ECCE
Confidence            4556678888876665 777777542       33566666433     2348899999999999999999987  5654


Q ss_pred             EEEEeCCHHHHHHHHHHh
Q 023087          268 CFYIPLASEALEKLLSEI  285 (287)
Q Consensus       268 ~l~Ip~~~~~l~~iLe~l  285 (287)
                       .+--+..+.+.++++..
T Consensus        84 -~~Y~l~~~~i~~ll~~~  100 (108)
T d1u2wa1          84 -ALYSLGDEHIRQIMMIA  100 (108)
T ss_dssp             -CEEEESCHHHHHHHHHH
T ss_pred             -EEEEECHHHHHHHHHHH
Confidence             23344566777776653