Citrus Sinensis ID: 023091

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWRGVTVVVSSAKTSENTSTAKTDESTEESSSEKSTLRSPIFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccEEEEccEEEEEEccccccccccccccccccEEccccEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccHHEccccccccccEEccccccccccccccccEEEEcccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEEEccccccccccccEEEcccEEccccEEEEEHHHHHccccHHccccEEEEEEEEccccEcccccEEEEcccccccc
Coil and Loop (DISEMBL)
massaalrSFHYSVGavaksgssferpgivlpvrnsswpsaasksfnlvtppvwRGVTVVVSSaktsentstaktdesteesssekstlrspifpsGFEALMLEVCDETEIAELKLKVGDFEMHlkrnvgapkapaplsnispttpppiptepmevsdpvspppppsppkpysekaapfinhsfgkssKLAALEAsgsngyvlvfsptvgsfrrnrtvkgkkqspickegdvikegqtigyldqfgtelpvksdVAGEVLKLLfddgdavgfgdpliavlpsfhdik
Flexible Loop (DISEMBL)
massaalrsFHYSVGAVaksgssferPGIVLPVRNSSWPSAASksfnlvtppvWRGVTVVVssaktsentstaktdesteesssekstlrspiFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVgapkapaplsniSPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSptvgsfrrnrtvkgkkqspickegdvikeGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK
Low Complexity Region (SEG)
MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWRGVTVVVSSAKTSENtstaktdesteesssekstLRSPIFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISpttpppiptepmevsdpvspppppsppkpysekaapFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK
Disordered region (IsUnstruct)
**********HYSVGA***********GIVLPVRN**W**AASKSFNLVTPPVWRGVTVVV*******************************IFPSGFEALMLEVCDETEIAELKLKVGDFEMHL************************************************************************SNGYVLVFSPTVGSFRRNRT*******PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF****
Disordered Region (DISOPRED)
**********HY*************************************************************************************FEALMLEVCDETEIAELKLKVGDFEMHLKRNVGA*********************************************************************YVLVFSPTVGSFRRNR*********ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFH***
Disordered Region (DISEMBL)
********SFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWRGVTVVVSS**************************RSPIFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPT*********************SEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRN**********ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK
Disordered Region (DISPRO)
************SVG*VAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWRGVTVVVS***************************RSPIFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNV*********************************************************************NGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWRGVTVVVSSAKTSENTSTAKTDESTEESSSEKSTLRSPIFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q06881	182	Biotin carboxyl carrier p	yes	no	0.574	0.906	0.274	1e-09
Q58628	567	Pyruvate carboxylase subu	yes	no	0.181	0.091	0.423	0.0002

>sp|Q06881|BCCP_NOSS1 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 21/186 (11%)

Query: 102 MLEVCDETEIAELKLKVGDFEMHLKRNVGA-----PKAPAPLSNISPTTPPPIPTEPMEV 156
           +L    +T+IAE+ LK  DFE+ +++ VG      P   APLS +  +  P         
Sbjct: 11  LLTTIAQTDIAEVTLKSDDFELTVRKAVGVNNSVVPVVTAPLSGVVGSGLPS-------- 62

Query: 157 SDPVSPPPPPSP-PKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRN 215
           + P+     PSP P+P + +AA     S G       ++   +     V SP VG+F R 
Sbjct: 63  AIPIVAHAAPSPSPEPGTSRAADHAVTSSGSQPGAKIIDQKLAE----VASPMVGTFYR- 117

Query: 216 RTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDP 275
                  ++   + GD I++GQT+  ++       +++DV+G+V+++L  +G+ V +  P
Sbjct: 118 --APAPGEAVFVEVGDRIRQGQTVCIIEAMKLMNEIEADVSGQVIEILVQNGEPVEYNQP 175

Query: 276 LIAVLP 281
           L+ + P
Sbjct: 176 LMRIKP 181

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q58628|PYCB_METJA Pyruvate carboxylase subunit B OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pycB PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
           KEGD +K+G  I  L+    E P++S V G V ++L D+GDAV  GD ++ +
Sbjct: 515 KEGDKVKKGDVIVVLEAMKMEHPIESPVEGTVERILIDEGDAVNVGDVIMII 566

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
255559567	258	Biotin carboxyl carrier protein of acety	0.801	0.891	0.724	3e-81
224098738	260	predicted protein [Populus trichocarpa]	0.898	0.992	0.646	6e-81
388509402	288	unknown [Lotus japonicus]	0.972	0.968	0.608	9e-80
357461439	274	Biotin carboxyl carrier protein of acety	0.937	0.981	0.606	1e-79
297816934	281	biotin/lipoyl attachment domain-containi	0.947	0.967	0.561	2e-79
359486366	288	PREDICTED: biotin carboxyl carrier prote	0.979	0.975	0.564	9e-79
388502566	274	unknown [Medicago truncatula]	0.937	0.981	0.602	9e-79
255639127	291	unknown [Glycine max]	0.968	0.955	0.6	4e-78
359806799	291	uncharacterized protein LOC100792471 [Gl	0.968	0.955	0.603	2e-77
224112427	251	predicted protein [Populus trichocarpa]	0.815	0.932	0.698	7e-77

>gi|255559567|ref|XP_002520803.1| Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis] gi|223539934|gb|EEF41512.1| Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/236 (72%), Positives = 193/236 (81%), Gaps = 6/236 (2%)

Query: 52  PVWRGVTVVVSSAKTSENTSTAKTDESTEESSSEKSTLRSPIFPSGFEALMLEVCDETEI 111
           P  R   + VS  K  E  +TAK+D +  + + EK+  R+  FPSGFEALMLEVCDETE+
Sbjct: 29  PKMRRNVMSVSCVKAPEVGATAKSDAA--DGAVEKTRPRTATFPSGFEALMLEVCDETEV 86

Query: 112 AELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKP 171
           AELKLKVGDFEMHL+RNVGA KAP  LS+ISP  PPPIPT+PM+V  P +   P SPPKP
Sbjct: 87  AELKLKVGDFEMHLRRNVGATKAP--LSHISPIEPPPIPTKPMDV--PATVAAPASPPKP 142

Query: 172 YSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGD 231
            SEKA PF N SFGKS+KLAALEASG+ GYVLV SPTVGSFRRNR+VKGK+Q PI KEGD
Sbjct: 143 SSEKATPFTNVSFGKSAKLAALEASGATGYVLVASPTVGSFRRNRSVKGKRQPPIFKEGD 202

Query: 232 VIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
           +IKEGQ IGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVG+GDPL+AVLPSFH I+
Sbjct: 203 LIKEGQVIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGYGDPLVAVLPSFHGIQ 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098738|ref|XP_002311250.1| predicted protein [Populus trichocarpa] gi|222851070|gb|EEE88617.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (784), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 185/286 (64%), Positives = 209/286 (73%), Gaps = 28/286 (9%)

Query: 1   MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWRGVTVV 60
           M SS  LRSF  ++ A  +        G+ +  +  S+PS   ++  LV           
Sbjct: 1   MESSVLLRSFQCNLLAQGQ--------GLTVGRKLISYPS--KRNLRLV----------- 39

Query: 61  VSSAKTSENTSTAKTDESTEESSSEKSTLRSPIFPSGFEALMLEVCDETEIAELKLKVGD 120
            S  KTSE  + AK+D+  ++ S EK++LR+  FP+GFEAL+LEVCDETEIAELKLKVGD
Sbjct: 40  -SCVKTSEAPAIAKSDDGNKQGSLEKNSLRNATFPNGFEALVLEVCDETEIAELKLKVGD 98

Query: 121 FEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYSEKAAPFI 180
           FEMHLKRNVGA KAP     IS T  PPIPT PMEVS   +  P PSP K   EK  PF 
Sbjct: 99  FEMHLKRNVGAAKAPL----ISSTPLPPIPTPPMEVS--AAVSPSPSPSKSSVEKTTPFT 152

Query: 181 NHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIG 240
           N SFGKSSKLAALEASG++GYVLV SPTVGSFRRNRTVKGKKQ PICKEGDVIKEGQ IG
Sbjct: 153 NVSFGKSSKLAALEASGASGYVLVASPTVGSFRRNRTVKGKKQPPICKEGDVIKEGQVIG 212

Query: 241 YLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDI 286
           YLDQFGTELPVKSDVAGEVLKLLF+DGDAVG+GDPLIAVLPSFH I
Sbjct: 213 YLDQFGTELPVKSDVAGEVLKLLFNDGDAVGYGDPLIAVLPSFHGI 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509402|gb|AFK42767.1| unknown [Lotus japonicus]

 Score =  302 bits (774), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 180/296 (60%), Positives = 214/296 (72%), Gaps = 17/296 (5%)

Query: 1   MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAAS------KSFNLVTPPVW 54
           M SSAA+RSFH +V  V    SSFE+  +V P  N+ W S +        +  ++     
Sbjct: 1   MESSAAIRSFHCTVPHVR---SSFEKVAVV-PCHNARWNSKSGLFIQRLANDRMLINSQA 56

Query: 55  RGVTVVVSSAKTSENTSTAKTD---ESTEESSSEKSTLRSPIFPSGFEALMLEVCDETEI 111
           +G   +VS AK  E  +TAK+D   +ST + S EK  L+S  FP+G EAL+LEVCDETEI
Sbjct: 57  KGRKTLVSCAKAVEAINTAKSDASLDSTSQDSVEKKALQSATFPNGLEALVLEVCDETEI 116

Query: 112 AELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKP 171
           AELK+KVG+FEMHLKRN+GA KAP  LSNISPTTPPPIP++PM+ S P +P   P  PK 
Sbjct: 117 AELKVKVGEFEMHLKRNIGATKAP--LSNISPTTPPPIPSKPMDESAPSTPQSLP--PKS 172

Query: 172 YSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGD 231
             EK  PF+N S  KSSKLA LEASG+N YV++ SPTVG FRR RTVKGK+Q P  KEGD
Sbjct: 173 SPEKTNPFVNASVQKSSKLAQLEASGTNNYVIISSPTVGLFRRGRTVKGKRQPPTYKEGD 232

Query: 232 VIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
           +IKEGQ IGYLDQFGT LPVKSDVAGEVLKLL +DG+ VG+GD LIAVLPSFHDIK
Sbjct: 233 LIKEGQVIGYLDQFGTGLPVKSDVAGEVLKLLVEDGEPVGYGDNLIAVLPSFHDIK 288

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461439|ref|XP_003601001.1| Biotin carboxyl carrier protein of acetyl-CoA carboxylase [Medicago truncatula] gi|355490049|gb|AES71252.1| Biotin carboxyl carrier protein of acetyl-CoA carboxylase [Medicago truncatula]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 177/292 (60%), Positives = 208/292 (71%), Gaps = 23/292 (7%)

Query: 1   MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWRGVTVV 60
           M SSAA+RSFHY +G ++   SS ER  +V P     W S              RG   +
Sbjct: 1   MDSSAAIRSFHYPIGTISHVRSSIERAAVV-PCHKIRWNSN-------------RGKKAL 46

Query: 61  VSSAKTSENTSTAKTD---ESTEESSSEKSTLRSPIFPSGFEALMLEVCDETEIAELKLK 117
           VS AK  E  +T K+D   +ST++   EK  L++  FP GFEAL+L+VCDETEIAELKLK
Sbjct: 47  VSCAKAVEAINTTKSDASLDSTQQDKLEKKPLQTATFPDGFEALILDVCDETEIAELKLK 106

Query: 118 VGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYSEKAA 177
           VG+FEMHLKRN+GA KAP  LSNISPTTPPPIP++PM+ S P +  P   PP   SEK  
Sbjct: 107 VGEFEMHLKRNIGATKAP--LSNISPTTPPPIPSKPMDESAPTTAQP--LPPTSSSEKTN 162

Query: 178 PFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQ 237
           PF N S  KSSKL ALEASG++ Y LV SPTVGSFRR RTVKG+K  PICKEGDVI+EGQ
Sbjct: 163 PFANVSSQKSSKLIALEASGTSTYALVSSPTVGSFRRGRTVKGQKHPPICKEGDVIREGQ 222

Query: 238 TIGYLDQFGT--ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
            IGYLDQFG    +P+KSDVAGEVLKLL ++GD VGFGDP++AVLPSFHDIK
Sbjct: 223 VIGYLDQFGVGAGIPIKSDVAGEVLKLLLEEGDPVGFGDPILAVLPSFHDIK 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816934|ref|XP_002876350.1| biotin/lipoyl attachment domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322188|gb|EFH52609.1| biotin/lipoyl attachment domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/292 (56%), Positives = 200/292 (68%), Gaps = 20/292 (6%)

Query: 1   MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWR----- 55
           MASSAAL S H ++     S S            + +W ++ +        P WR     
Sbjct: 1   MASSAALGSLHQTLVCAINSQSEVHS-------LSGNWSASGNSCV-----PRWRLSNRN 48

Query: 56  GVTVVVSSAKTSENTSTAKTDESTEES-SSEKSTLRSPIFPSGFEALMLEVCDETEIAEL 114
               +V  AK +++++  K+D+S+E S S+ K T+R   FP   EAL+ E+CDETE+A L
Sbjct: 49  SKYTLVLRAKAAKSSTATKSDDSSEASVSNGKKTVRRITFPKEVEALVHEMCDETEVAVL 108

Query: 115 KLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYSE 174
           +LKVGDFEM+LKR +GA   P P+ +ISPT  PPIP+EPM  S  VS  P PS  KP SE
Sbjct: 109 QLKVGDFEMNLKRKIGAATNPIPMVDISPTIAPPIPSEPMNKS--VSSAPSPSKAKPSSE 166

Query: 175 KAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIK 234
           K +PF N S+GK +KLAALEASGSN YVLV SP VG F+R+RTVKGKKQSP CKEGD IK
Sbjct: 167 KVSPFKNTSYGKPAKLAALEASGSNNYVLVTSPAVGKFQRSRTVKGKKQSPSCKEGDAIK 226

Query: 235 EGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDI 286
           EGQ IGYL Q GTELPV SDVAGEVLKLL DDGD+VG+GDPL+A+LPSFHDI
Sbjct: 227 EGQVIGYLHQLGTELPVTSDVAGEVLKLLSDDGDSVGYGDPLVAILPSFHDI 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486366|ref|XP_002278151.2| PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase-like [Vitis vinifera] gi|297736542|emb|CBI25413.3| unnamed protein product [Vitis vinifera]

 Score =  299 bits (766), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 166/294 (56%), Positives = 207/294 (70%), Gaps = 13/294 (4%)

Query: 1   MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFN-------LVTPPV 53
           M S A LRS HYSVGA++   S  ERP +V P+ N++WP++ +           L++ P+
Sbjct: 1   MESVAVLRSVHYSVGAISNVRSFIERPTMV-PMYNATWPTSNTLHVQGLTVGGKLISSPI 59

Query: 54  WRGVTVVVSSAKTSENTSTAKTDESTEESSSEKSTLRSPIFPSGFEALMLEVCDETEIAE 113
            +  T++ S  KT E   TAK D+   +   +K TL S  FP+GFEAL+LEVCDET++AE
Sbjct: 60  KQKGTLI-SCVKTPETAGTAKCDDGNPQGLLQKDTLPSATFPNGFEALILEVCDETDVAE 118

Query: 114 LKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYS 173
           LKLKVGDFEMHL+RNVG    P P+  I+PT PP +  +P    +     PP  PPKP  
Sbjct: 119 LKLKVGDFEMHLRRNVGVTNPPMPV--IAPTAPPTVSAKPP--VESAPAAPPSLPPKPSQ 174

Query: 174 EKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVI 233
           EK +PF      K SKL ALEASG+N YVLV SPTVGSFR  RT+KGK+Q P+CKEGDVI
Sbjct: 175 EKISPFTKSLLEKPSKLRALEASGANAYVLVSSPTVGSFRTGRTLKGKRQPPVCKEGDVI 234

Query: 234 KEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
           KEGQ IGYLDQFG+ELPVKSD AGEVLK++F+DG+AVG+GDPL+AVLPSFH I+
Sbjct: 235 KEGQVIGYLDQFGSELPVKSDTAGEVLKVIFNDGEAVGYGDPLVAVLPSFHGIE 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502566|gb|AFK39349.1| unknown [Medicago truncatula]

 Score =  299 bits (766), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 176/292 (60%), Positives = 207/292 (70%), Gaps = 23/292 (7%)

Query: 1   MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWRGVTVV 60
           M SSAA+RSFHY +G ++   SS ER  +V P     W S              RG   +
Sbjct: 1   MDSSAAIRSFHYPIGTISHVRSSIERAAVV-PCHKIRWNSN-------------RGKKAL 46

Query: 61  VSSAKTSENTSTAKTD---ESTEESSSEKSTLRSPIFPSGFEALMLEVCDETEIAELKLK 117
           VS AK  E  +T K+D   +ST++   EK  L++  FP GFEAL+L+VCDETEIAELKLK
Sbjct: 47  VSCAKAVEAINTTKSDASLDSTQQDKLEKKPLQTATFPDGFEALILDVCDETEIAELKLK 106

Query: 118 VGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYSEKAA 177
           VG+FEMHLKRN+GA KAP  LSNISPTTPPPIP++PM+ S P +  P    P   SEK  
Sbjct: 107 VGEFEMHLKRNIGATKAP--LSNISPTTPPPIPSKPMDESAPTTAQPLS--PTSSSEKTN 162

Query: 178 PFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQ 237
           PF N S  KSSKL ALEASG++ Y LV SPTVGSFRR RTVKG+K  PICKEGDVI+EGQ
Sbjct: 163 PFANVSSQKSSKLIALEASGTSTYALVSSPTVGSFRRGRTVKGQKHPPICKEGDVIREGQ 222

Query: 238 TIGYLDQFGT--ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
            IGYLDQFG    +P+KSDVAGEVLKLL ++GD VGFGDP++AVLPSFHDIK
Sbjct: 223 VIGYLDQFGVGAGIPIKSDVAGEVLKLLLEEGDPVGFGDPILAVLPSFHDIK 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639127|gb|ACU19863.1| unknown [Glycine max]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 180/300 (60%), Positives = 217/300 (72%), Gaps = 22/300 (7%)

Query: 1   MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAA----------SKSFNLVT 50
           M SSAA+RSFHY +G ++   +S E+  +V P+ N+ W S +           K  N  T
Sbjct: 1   MESSAAIRSFHYPIGTMSHVRASLEKQAVV-PIHNAGWNSKSRLFIQHLAYGQKHINSHT 59

Query: 51  PPVWRGVTVVVSSAKTSENTSTAKTDESTE---ESSSEKSTLRSPIFPSGFEALMLEVCD 107
               +G   ++S  KT+E  + +K+D S++   + S EK  L++  FP+GFEAL+LEVCD
Sbjct: 60  ----KGKNTLISCGKTAEAINASKSDASSDNTPQGSLEKKPLQTATFPNGFEALVLEVCD 115

Query: 108 ETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPS 167
           ETEIAELK+KVGDFEMH+KRN+GA K P  LSNISPTTPPPIP++PM+  +      PPS
Sbjct: 116 ETEIAELKVKVGDFEMHIKRNIGATKVP--LSNISPTTPPPIPSKPMD--ESAPGSLPPS 171

Query: 168 PPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPIC 227
           PPK   EK  PF N S  KS +LAALEASG+N YVLV SPTVG FRR RTVKGKKQ PIC
Sbjct: 172 PPKSSPEKNNPFANVSKEKSPRLAALEASGTNTYVLVSSPTVGLFRRGRTVKGKKQPPIC 231

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
           KEGDVIKEGQ IGYLDQFGT LP+KSDVAGEVLKLL +DG+ VG+GDPLIAVL SFHDIK
Sbjct: 232 KEGDVIKEGQVIGYLDQFGTGLPIKSDVAGEVLKLLVEDGEPVGYGDPLIAVLSSFHDIK 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806799|ref|NP_001241051.1| uncharacterized protein LOC100792471 [Glycine max] gi|255637418|gb|ACU19037.1| unknown [Glycine max]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/300 (60%), Positives = 216/300 (72%), Gaps = 22/300 (7%)

Query: 1   MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSA----------ASKSFNLVT 50
           M SS A+RSFHY +G ++   +  E+   VLP+ N+ W S             K  N   
Sbjct: 1   MESSPAIRSFHYPMGTMSHVRACLEKQA-VLPIHNARWNSKRRLFIQHLAYGQKHIN--- 56

Query: 51  PPVWRGVTVVVSSAKTSENTSTAKTDESTE---ESSSEKSTLRSPIFPSGFEALMLEVCD 107
               +G + +VSSAKT+E  +T+ +D S++   + S EK  L++  FP+GFEAL+LEVCD
Sbjct: 57  -SHMKGKSTLVSSAKTAEAINTSNSDASSDNTPQGSLEKKPLQTATFPNGFEALVLEVCD 115

Query: 108 ETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPS 167
           ETEIAELK+KVGDFEMH+KRN+GA K P  LSNISPTTPPPIP++PM+  +      PPS
Sbjct: 116 ETEIAELKVKVGDFEMHIKRNIGATKVP--LSNISPTTPPPIPSKPMD--ESAPNSLPPS 171

Query: 168 PPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPIC 227
           PPK   EK  PF N S  KS KLAALEASG+N YVLV SPTVG FRR RTVKGKKQ PIC
Sbjct: 172 PPKSSPEKNNPFANVSKEKSPKLAALEASGTNTYVLVTSPTVGLFRRGRTVKGKKQPPIC 231

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
           KEGDVIKEGQ IGYLDQFGT LP++SDVAGEVLKLL +DG+ VG+GD LIAVLPSFHDIK
Sbjct: 232 KEGDVIKEGQVIGYLDQFGTGLPIRSDVAGEVLKLLVEDGEPVGYGDRLIAVLPSFHDIK 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112427|ref|XP_002316186.1| predicted protein [Populus trichocarpa] gi|222865226|gb|EEF02357.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 167/239 (69%), Positives = 193/239 (80%), Gaps = 5/239 (2%)

Query: 48  LVTPPVWRGVTVVVSSAKTSENTSTAKTDESTEESSSEKSTLRSPIFPSGFEALMLEVCD 107
           L++ PV R   +V S  KTSE  + AKTD+S ++ S EK++ R+  FP+GFEAL+L+VCD
Sbjct: 16  LISYPVKRDRRLV-SCVKTSEAPAIAKTDDSNKQGSLEKNSQRNATFPNGFEALILDVCD 74

Query: 108 ETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPS 167
           ETE+AELKLKVGDFEMHLK+N+G  KAP   ++ +P +PPPIPT PME+S  VSP P PS
Sbjct: 75  ETEVAELKLKVGDFEMHLKQNIGVAKAP--FTSSTPLSPPPIPTPPMELSAAVSPAPSPS 132

Query: 168 PPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPIC 227
                 EK  PF N SF KSSKLA LEASG++GYVLV SPTVGSFRRNRTVKGKKQ  IC
Sbjct: 133 KSSV--EKTTPFTNVSFRKSSKLAVLEASGASGYVLVASPTVGSFRRNRTVKGKKQPLIC 190

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDI 286
           KEGDVIKEGQ IGYLDQFGTELPVKSDVAGEVLKLLF+DGDAVG+GDPL+AVLPSFH I
Sbjct: 191 KEGDVIKEGQVIGYLDQFGTELPVKSDVAGEVLKLLFNDGDAVGYGDPLVAVLPSFHAI 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2078401	281	AT3G56130 [Arabidopsis thalian	0.947	0.967	0.469	5.3e-56
TAIR|locus:2035149	274	AT1G52670 [Arabidopsis thalian	0.320	0.335	0.532	6.1e-31
TAIR|locus:2093237	263	AT3G15690 [Arabidopsis thalian	0.372	0.406	0.458	2.6e-30
UNIPROTKB|Q881H5	135	PSPTO_2918 "Uncharacterized pr	0.195	0.414	0.403	6.1e-05
UNIPROTKB|Q9KV61	196	VC_0296 "Acetyl-CoA carboxylas	0.254	0.372	0.276	0.00018
TIGR_CMR|VC_0296	196	VC_0296 "acetyl-CoA carboxylas	0.254	0.372	0.276	0.00018
UNIPROTKB|Q81Q84	70	BA_2549 "Uncharacterized prote	0.174	0.714	0.36	0.00032
TIGR_CMR|BA_2549	70	BA_2549 "conserved hypothetica	0.174	0.714	0.36	0.00032

TAIR|locus:2078401 AT3G56130 [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 137/292 (46%), Positives = 164/292 (56%)

Query:     1 MASSAALRSFHYSVGAVAKSGSSFERPGIVLPVRNSSWPSAASKSFNLVTPPVWR----- 55
             MASSAAL S H ++G+   S S            + +W SA+  S      P WR     
Sbjct:     1 MASSAALGSLHQTLGSAINSQSEVHS-------LSGNW-SASGNS----CVPRWRLSNRN 48

Query:    56 -GVTVVVSSAKTSENXXXXXXXXXXXXXXXXXXXLRSPIFPSGFEALMLEVCDETEIAEL 114
                 +V+ +     +                   +R   FP   EAL+ E+CDETE+A L
Sbjct:    49 SNYRLVLRAKAAKSSTTTISDGSSDASVSDGKKTVRRITFPKEVEALVHEMCDETEVAVL 108

Query:   115 KLKVGDFEMHLKRNVGAPKAPAPLSNISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 174
             +LKVGDFEM+LKR +GA   P P+++IS                                
Sbjct:   109 QLKVGDFEMNLKRKIGAATNPIPVADISPTVAPPIPSEPMNKSASSAPSPSQAKPSSEKV 168

Query:   175 XXXXFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIK 234
                 F N S+GK +KLAALEASGS  YVLV SP VG F+R+RTVKGKKQSP CKEGD IK
Sbjct:   169 SP--FKNTSYGKPAKLAALEASGSTNYVLVTSPAVGKFQRSRTVKGKKQSPSCKEGDAIK 226

Query:   235 EGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDI 286
             EGQ IGYL Q GTELPV SDVAGEVLKLL DDGD+VG+GDPL+AVLPSFHDI
Sbjct:   227 EGQVIGYLHQLGTELPVTSDVAGEVLKLLSDDGDSVGYGDPLVAVLPSFHDI 278

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2035149 AT1G52670 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
 Identities = 49/92 (53%), Positives = 71/92 (77%)

Query:   196 SGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDV 255
             +   G V++ SPTVG FRR++T+KGK+   ICKE D++KEGQ + Y++Q G ++PV+SDV
Sbjct:   180 AADQGLVILQSPTVGYFRRSKTIKGKRTPTICKEKDIVKEGQVLCYIEQLGGQIPVESDV 239

Query:   256 AGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
             +GE++K+L +DG+ VG+ D LI VLPSF  IK
Sbjct:   240 SGEIVKILREDGEPVGYNDALITVLPSFPGIK 271

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2093237 AT3G15690 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 50/109 (45%), Positives = 74/109 (67%)

Query:   181 NHSFGKSSKLAALEASGS--NGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQT 238
             N S   +S   +  AS +   G +++ SP VG FRR++T+KGK+    CKE D +KEGQ 
Sbjct:   152 NGSASSTSLAISKPASSAADQGLMILQSPKVGFFRRSKTIKGKRLPSSCKEKDQVKEGQI 211

Query:   239 IGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFHDIK 287
             + Y++Q G + P++SDV GEV+K+L +DG+ VG+ D LI++LPSF  IK
Sbjct:   212 LCYIEQLGGQFPIESDVTGEVVKILREDGEPVGYNDALISILPSFPGIK 260

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

UNIPROTKB|Q881H5 PSPTO_2918 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 94 (38.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query:   221 KKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
             +K S + K GD +  GQ +G L      LPV+S  AG V++ L  + + VG+G PLI
Sbjct:    76 EKNSYV-KPGDRVAAGQLLGLLRIGRLYLPVRSSQAGRVVRFLAAEHERVGYGQPLI 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KV61 VC_0296 "Acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 86 (35.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 21/76 (27%), Positives = 37/76 (48%)

Query:   204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263
             V SP VG+F R+ +   K      + G  +  G T+  ++       +++D +G V  +L
Sbjct:   123 VLSPMVGTFYRSPSPDAKA---FIEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAIL 179

Query:   264 FDDGDAVGFGDPLIAV 279
              +DG  V F  PL+ +
Sbjct:   180 VEDGQTVEFDQPLVVI 195

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|VC_0296 VC_0296 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 86 (35.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 21/76 (27%), Positives = 37/76 (48%)

Query:   204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263
             V SP VG+F R+ +   K      + G  +  G T+  ++       +++D +G V  +L
Sbjct:   123 VLSPMVGTFYRSPSPDAKA---FIEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAIL 179

Query:   264 FDDGDAVGFGDPLIAV 279
              +DG  V F  PL+ +
Sbjct:   180 VEDGQTVEFDQPLVVI 195

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

UNIPROTKB|Q81Q84 BA_2549 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 93 (37.8 bits), Expect = 0.00032, P = 0.00032
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query:   230 GDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
             GD ++E Q +  L+    E+P+ S+ AG V+K+   +GD V  GD L+ +
Sbjct:    20 GDTVEEEQDVVILESMKMEIPIVSEEAGTVMKINVQEGDFVNEGDVLLEI 69

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2549 BA_2549 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 93 (37.8 bits), Expect = 0.00032, P = 0.00032
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query:   230 GDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
             GD ++E Q +  L+    E+P+ S+ AG V+K+   +GD V  GD L+ +
Sbjct:    20 GDTVEEEQDVVILESMKMEIPIVSEEAGTVMKINVQEGDFVNEGDVLLEI 69


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      287       232   0.00085  113 3  11 22  0.44    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.53u 0.14s 16.67t   Elapsed:  00:00:01
  Total cpu time:  16.53u 0.14s 16.67t   Elapsed:  00:00:01
  Start:  Sat May 11 10:13:27 2013   End:  Sat May 11 10:13:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0010006502	hypothetical protein (261 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00161050	SubName- Full=Putative uncharacterized protein; (760 aa)			•						0.410
	eugene3.00060828	acetyl-CoA carboxylase (EC-6.4.1.2) (753 aa)			•						0.406
	gw1.XIV.1152.1	acetyl-CoA carboxylase (587 aa)			•						0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	3e-14
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	2e-11
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	2e-10
TIGR00531	156	TIGR00531, BCCP, acetyl-CoA carboxylase, biotin ca	3e-10
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	1e-06
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	1e-06
PRK05889	71	PRK05889, PRK05889, putative acetyl-CoA carboxylas	6e-06
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	1e-05
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	1e-05
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	5e-05
PRK07051	80	PRK07051, PRK07051, hypothetical protein; Validate	0.003

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 43/173 (24%)

Query: 107 DETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPP 166
            E++  E ++KV + E+ L R     +            P    +     + P +  P P
Sbjct: 9   VESDGTEFEVKVEEGEVRLSRKTPVVQDVPAP------APIEASSPSAAAAQPAASAPAP 62

Query: 167 SPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPI 226
           +P                                   V SP VG+  +          P 
Sbjct: 63  APAAAAGGTQ---------------------------VTSPMVGTVYK----------PF 85

Query: 227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
            + GD +K GQT+  ++    E  +++   G V ++L  +GD V +GDPL  +
Sbjct: 86  VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138

Length = 140

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263
           V +P  G+  +           + KEGD ++ GQ +  L+    E  V + VAG V ++L
Sbjct: 2   VTAPMPGTVVK----------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEIL 51

Query: 264 FDDGDAVGFGDPLIAV 279
             +GD V  G  L+ +
Sbjct: 52  VKEGDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 32/171 (18%)

Query: 107 DETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPP 166
           DE+ I+E ++K G+  + + R   AP AP                     + PV+  P  
Sbjct: 14  DESGISEFEIKEGEESVRISRAAAAPVAPVA---------------QQAAAAPVAAAPAA 58

Query: 167 SPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPI 226
           +     +  AAP             A  A+ + G+V V SP VG+F R  +       P 
Sbjct: 59  AAAAAAAPAAAP-------------AAAAAEAEGHV-VTSPMVGTFYRAPS-PDAP--PF 101

Query: 227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
            + GD +KEGQT+  ++       +++D +G V ++L ++G  V FG PL 
Sbjct: 102 VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLF 152

Length = 155

>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier protein

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 33/179 (18%)

Query: 102 MLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPM-EVSDPV 160
           ++++ +E+ I EL+LK  +FE+ L +   A K  A     +P    P           P 
Sbjct: 9   LIKLIEESGITELELKEEEFEVRLSKAAAAAKKSAVQQAAAP---VPAQVPAAPSAQAPA 65

Query: 161 SPPPPPSPPKPYSEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKG 220
                P+P K                       +  G      V SP VG+F R  +   
Sbjct: 66  PAVCAPAPAK----------------------ADKKGH----FVRSPMVGTFYRAPSPDA 99

Query: 221 KKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
           K   P  + GD +K+GQ +  ++       ++++VAG+V+++L ++G  V +G PLI +
Sbjct: 100 K---PFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVI 155

This model is designed to identify biotin carboxyl carrier protein as a peptide of acetyl-CoA carboxylase. Scoring below the trusted cutoff is a related protein encoded in a region associated with polyketide synthesis in the prokaryote Saccharopolyspora hirsuta, and a reported chloroplast-encoded biotin carboxyl carrier protein that may be highly derived from the last common ancestral sequence. Scoring below the noise cutoff are biotin carboxyl carrier domains of other enzymes such as pyruvate carboxylase.The gene name is accB or fabE [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 156

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 37/165 (22%), Positives = 55/165 (33%), Gaps = 24/165 (14%)

Query: 127 RNVGAPKAPAPLSNISPTTPPPIPTEPMEVS----------DPVSPPPPPSPPKPYSEKA 176
           R  G  K        +      IPTE  +V           + V                
Sbjct: 442 REAGELKPEPEPKEAAAAGAEGIPTE-FKVEVDGEKYEVKIEGVKAEGKRPFYLRVDGMP 500

Query: 177 APFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEG 236
              +     +        AS       V SP  G+  +   VK        KEGD +K G
Sbjct: 501 EEVVVEPLKEIVVGGRPRASAPGA---VTSPMPGTVVK---VK-------VKEGDKVKAG 547

Query: 237 QTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281
            T+  L+    E  +++ V G V ++L  +GD V  GD L+ + P
Sbjct: 548 DTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592

Length = 592

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 206 SPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFD 265
           SP +G   +  T +        K GD +K GQ +  ++    E+ + + VAG V ++L  
Sbjct: 5   SPMIGESVKEGTAEWLV-----KVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59

Query: 266 DGDAVGFGDPLI 277
           +GD V  GDPL 
Sbjct: 60  EGDTVEVGDPLA 71

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280
           +  EGD I +G T+  L+    E+PV ++VAG V K+    GD +  GD LIAV+
Sbjct: 17  VVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGD-LIAVI 70

Length = 71

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
           K GD ++EGQ +  L+    E+P+ ++ AG V K+   +GD V  GD L+
Sbjct: 18  KVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLL 67

Length = 70

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 23/225 (10%)

Query: 63  SAKTSENTSTAKTDESTEESSSEKSTLRSPIFPSGFEALMLEVC------DETEIAELKL 116
           SAK+ +  S     E  +E  S  S+  +          M +V       D  +I EL+L
Sbjct: 67  SAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDIVELQL 126

Query: 117 KVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPYSEKA 176
           K  D E+ +++    P+ P P   +    PPP    P         P  P+   P +  +
Sbjct: 127 KQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPAS 186

Query: 177 APFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEG 236
            P         S    L+           SP  G+F R+       + P  K GD +++G
Sbjct: 187 PPPAKAP---KSSHPPLK-----------SPMAGTFYRS---PAPGEPPFVKVGDKVQKG 229

Query: 237 QTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP 281
           Q +  ++       +++D +G ++++L +DG  V    PL  + P
Sbjct: 230 QVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274

Length = 274

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 12/96 (12%)

Query: 186  KSSKLAALEASG--SNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD 243
                  A E       G   V S   G+F +           + + GD ++ GQ +  L+
Sbjct: 1115 AEEVTEAPEEEADLPEGAEQVESEYAGNFWK----------VLVEVGDRVEAGQPLVILE 1164

Query: 244  QFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
                E+PV + VAG+V K+L   GD V  GD +  +
Sbjct: 1165 AMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVL 1200

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263
           + SP  G+F R  +       P  + GD +  G  +G ++       V+++ AG V++ L
Sbjct: 6   IVSPLPGTFYRRPS---PDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFL 62

Query: 264 FDDGDAVGFGDPL 276
            +DG+ V  G  L
Sbjct: 63  VEDGEPVEAGQVL 75

Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.97
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.97
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.95
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.93
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.73
PRK07051	80	hypothetical protein; Validated	99.68
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.68
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.63
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.63
PRK06748	83	hypothetical protein; Validated	99.61
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.59
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.48
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.37
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.33
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.32
PRK09282	592	pyruvate carboxylase subunit B; Validated	99.3
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.29
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.27
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.26
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.25
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.22
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.22
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	99.21
PRK12999	1146	pyruvate carboxylase; Reviewed	99.2
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.14
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.1
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	99.07
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.02
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.02
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.01
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	98.97
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.97
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	98.97
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	98.85
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	98.84
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.8
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.76
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.75
PRK01202	127	glycine cleavage system protein H; Provisional	98.72
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	98.69
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	98.65
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.63
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	98.63
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.6
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.57
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	98.55
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	98.54
PRK00624	114	glycine cleavage system protein H; Provisional	98.49
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	98.44
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	98.31
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.27
PRK13380	144	glycine cleavage system protein H; Provisional	98.26
PRK09783	409	copper/silver efflux system membrane fusion protei	98.18
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	98.14
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	98.05
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.98
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	97.91
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	97.85
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	97.85
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.85
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.8
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.79
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.78
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.65
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.64
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.64
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.64
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.62
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.52
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	97.5
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.43
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.38
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	97.33
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.25
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	97.25
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.21
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	97.17
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	97.1
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	97.05
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	97.05
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.92
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	96.91
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.79
PRK06748	83	hypothetical protein; Validated	96.67
PRK12784	84	hypothetical protein; Provisional	96.55
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	96.45
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	95.97
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.96
PF13437	105	HlyD_3: HlyD family secretion protein	95.93
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	95.89
COG3608	331	Predicted deacylase [General function prediction o	95.77
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	95.76
PRK09439	169	PTS system glucose-specific transporter subunit; P	95.73
PRK10476	346	multidrug resistance protein MdtN; Provisional	95.65
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	95.51
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	95.24
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	95.21
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	95.21
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.1
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	95.08
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	94.95
PRK15136	390	multidrug efflux system protein EmrA; Provisional	94.84
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.83
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	94.83
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	94.81
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	94.8
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	94.77
PRK09859	385	multidrug efflux system protein MdtE; Provisional	94.74
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	94.68
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	94.6
PRK03598	331	putative efflux pump membrane fusion protein; Prov	94.6
PRK11578	370	macrolide transporter subunit MacA; Provisional	94.59
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	94.48
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	94.45
PRK07051	80	hypothetical protein; Validated	94.41
COG2190	156	NagE Phosphotransferase system IIA components [Car	94.39
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	94.36
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	94.31
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	93.85
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	93.8
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	93.75
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	93.7
PF13437	105	HlyD_3: HlyD family secretion protein	93.63
PRK05035	695	electron transport complex protein RnfC; Provision	93.36
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	93.34
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	93.31
PRK09783	409	copper/silver efflux system membrane fusion protei	92.4
PF00529	305	HlyD: HlyD family secretion protein the correspond	91.84
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	91.75
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	91.59
PRK14042	596	pyruvate carboxylase subunit B; Provisional	91.32
PRK10255	648	PTS system N-acetyl glucosamine specific transport	91.2
PRK09824	627	PTS system beta-glucoside-specific transporter sub	91.18
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	90.94
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	90.86
PRK14040	593	oxaloacetate decarboxylase; Provisional	90.36
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	90.14
PRK05305	206	phosphatidylserine decarboxylase; Provisional	90.08
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	89.38
PRK09282	592	pyruvate carboxylase subunit B; Validated	89.37
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	88.83
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	88.75
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	88.71
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	87.78
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	87.71
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	87.56
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	86.93
PF02666	202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	86.67
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	86.57
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	86.41
PRK12784	84	hypothetical protein; Provisional	86.21
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	85.81
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	85.03
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	84.72
PRK09439	169	PTS system glucose-specific transporter subunit; P	84.38
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	84.11
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	83.94
PRK12999	1146	pyruvate carboxylase; Reviewed	83.88
PRK09824	627	PTS system beta-glucoside-specific transporter sub	82.31
COG2190	156	NagE Phosphotransferase system IIA components [Car	80.72

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.97  E-value=3.2e-30  Score=222.61  Aligned_cols=156  Identities=29%  Similarity=0.555  Sum_probs=109.9

Q ss_pred             CChhHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023091           93 IFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPY  172 (287)
Q Consensus        93 ~~~~~i~~LLie~~d~S~l~Elel~~~d~~L~L~R~~~~~~~~~p~~~~sp~~~~~~~~~p~~~~a~~a~~~~~~~~~~~  172 (287)
                      |..++|++| +++|++|+|+||+|+.+|++|+|+|+......  +..+ + . .++.. .+    ++....  ..++.+ 
T Consensus         1 Md~~~Ik~L-i~~~~~s~l~elei~~~~~~l~l~k~~~~~~~--~~~~-~-~-~~~~~-~~----~~~~~~--~~~~~~-   66 (156)
T TIGR00531         1 MNIREIKEL-IKLIEESGITELELKEEEFEVRLSKAAAAAKK--SAVQ-Q-A-AAPVP-AQ----VPAAPS--AQAPAP-   66 (156)
T ss_pred             CCHHHHHHH-HHHHHHCCCcEEEEEeCCEEEEEEecCCCCcc--cccc-c-c-CCCcc-cc----CCCCCC--CCCCCC-
Confidence            346789998 69999999999999999999999996421111  0000 0 0 00000 00    000000  000000 


Q ss_pred             CcccCCccccccCcchhhhhhhhcCCCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeee
Q 023091          173 SEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVK  252 (287)
Q Consensus       173 ~e~~~p~~~~~~~~~~~~~a~~a~~~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~  252 (287)
                       ....+             + ....+.+...|+|||+|+||+.|+   |+.+|||++||.|++||+||+||+||++++|+
T Consensus        67 -~~~~~-------------~-~~~~~~~~~~v~sp~~G~~~~~~~---P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~  128 (156)
T TIGR00531        67 -AVCAP-------------A-PAKADKKGHFVRSPMVGTFYRAPS---PDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIE  128 (156)
T ss_pred             -CCCCC-------------C-cccccCCCCEEeCCCCEEEEecCC---CCCCccccCCCEeCCCCEEEEEEecccceEEe
Confidence             00000             0 000112335799999999999976   79999999999999999999999999999999


Q ss_pred             cCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          253 SDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      |+++|+|++|++++|+.|+|||+||+|+
T Consensus       129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       129 AEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            9999999999999999999999999984

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.97  E-value=2.2e-29  Score=217.12  Aligned_cols=155  Identities=30%  Similarity=0.540  Sum_probs=109.6

Q ss_pred             CChhHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023091           93 IFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPY  172 (287)
Q Consensus        93 ~~~~~i~~LLie~~d~S~l~Elel~~~d~~L~L~R~~~~~~~~~p~~~~sp~~~~~~~~~p~~~~a~~a~~~~~~~~~~~  172 (287)
                      |..++|++| +++|++|+|+||+|+.+|++|+|+|+......  +... .+. ..+....+.    + .++  . ...+.
T Consensus         1 Md~~~I~~L-i~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~--~~~~-~~~-~~p~~~~~~----~-~~~--~-~~~~~   67 (155)
T PRK06302          1 MDIRKIKKL-IELVDESGISEFEIKEGEESVRISRAAAAPVA--PVAQ-QAA-AAPVAAAPA----A-AAA--A-AAAPA   67 (155)
T ss_pred             CCHHHHHHH-HHHHHHCCCeEEEEEcCCEEEEEEeCCCCCcc--cccc-ccc-cCCCCCCCC----C-CCc--c-ccCCC
Confidence            346789998 69999999999999999999999996421100  0000 000 000000000    0 000  0 00000


Q ss_pred             CcccCCccccccCcchhhhhhhhcCCCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeee
Q 023091          173 SEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVK  252 (287)
Q Consensus       173 ~e~~~p~~~~~~~~~~~~~a~~a~~~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~  252 (287)
                         ..+             ..+. ...+...|+|||+|+||++|+   |+.+|||++||.|++||+||+||+||++++|+
T Consensus        68 ---~~~-------------~~~~-~~~~~~~v~sp~~G~~~~~~s---P~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~  127 (155)
T PRK06302         68 ---AAP-------------AAAA-AEAEGHVVTSPMVGTFYRAPS---PDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIE  127 (155)
T ss_pred             ---CCC-------------CCCc-cCCCCCEEeCCcCEEEEecCC---CCCCcccCCCCEeCCCCEEEEEEecccceEEe
Confidence               000             0000 011235799999999999976   79999999999999999999999999999999


Q ss_pred             cCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          253 SDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      |+++|+|+++++++|+.|+|||+||+|+
T Consensus       128 a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        128 ADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             cCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            9999999999999999999999999984

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.95  E-value=2.6e-27  Score=201.02  Aligned_cols=71  Identities=32%  Similarity=0.586  Sum_probs=68.0

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|+|||+|+||+.          ||++||+|++||+||+||+|||+|+|.||.+|+|.+|++++||.|+|||+|++|+
T Consensus        70 ~~~V~SPm~Gtv~~~----------~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          70 GTQVTSPMVGTVYKP----------FVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             CceEecCcceEEEEE----------eeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            467999999999983          9999999999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 023091          281 P  281 (287)
Q Consensus       281 p  281 (287)
                      +
T Consensus       140 ~  140 (140)
T COG0511         140 P  140 (140)
T ss_pred             C
Confidence            4

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.93  E-value=8.7e-25  Score=202.36  Aligned_cols=171  Identities=25%  Similarity=0.480  Sum_probs=115.2

Q ss_pred             CChhHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023091           93 IFPSGFEALMLEVCDETEIAELKLKVGDFEMHLKRNVGAPKAPAPLSNISPTTPPPIPTEPMEVSDPVSPPPPPSPPKPY  172 (287)
Q Consensus        93 ~~~~~i~~LLie~~d~S~l~Elel~~~d~~L~L~R~~~~~~~~~p~~~~sp~~~~~~~~~p~~~~a~~a~~~~~~~~~~~  172 (287)
                      .|..++..| ++++|..||.||+|++-|++|-|||.......+.+.....-..+.+....|....+ ..++  +.++...
T Consensus       104 ~f~~qv~~l-v~lv~~~di~e~~lk~~~~e~~irkkeal~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~--~~~~~~~  179 (274)
T PLN02983        104 EFMTQVSSL-VKLVDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASPPA-AQPA--PSAPASS  179 (274)
T ss_pred             HHHHHHHHH-HhhhccccceeeeccccceEEEEecccccCCCCCCCceEEecCCCcccCCCCCCcc-cCCC--CCCCCCC
Confidence            488889998 69999999999999999999999998654332101000000000000000100000 0000  0000000


Q ss_pred             CcccCCccccccCcchhhhhhhhcCCCCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeee
Q 023091          173 SEKAAPFINHSFGKSSKLAALEASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVK  252 (287)
Q Consensus       173 ~e~~~p~~~~~~~~~~~~~a~~a~~~~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~  252 (287)
                       ...++        .  ..+......+....|+|||.|+||+.|.   ++..|+|++||.|++||+||+||+||++++|+
T Consensus       180 -~~~~~--------~--~~~~~~~~~s~~~~V~APmaGtf~r~p~---pge~w~VkvGDsVkkGQvLavIEAMKmeieV~  245 (274)
T PLN02983        180 -PPPTP--------A--SPPPAKAPKSSHPPLKSPMAGTFYRSPA---PGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIE  245 (274)
T ss_pred             -CCCCC--------C--CCCCCCCCcCCCCeEeCCcCeEEEeccC---CCCcceeCCCCEecCCCEEEEEEeeceeeEEe
Confidence             00000        0  0000112334567899999999999875   67899999999999999999999999999999


Q ss_pred             cCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          253 SDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      |+++|+|++|++++||.|.+||+||+|++
T Consensus       246 AP~sGtV~eIlVkeGD~V~vGqpL~~IEP  274 (274)
T PLN02983        246 ADQSGTIVEILAEDGKPVSVDTPLFVIEP  274 (274)
T ss_pred             cCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence            99999999999999999999999999975

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.73  E-value=8.6e-18  Score=127.78  Aligned_cols=73  Identities=23%  Similarity=0.473  Sum_probs=69.3

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      .|++|+.|.+++.+    ...+|+|++||.|++||+||.||+||+..+|+||.+|+|.++++++|+.|.+|++|++|
T Consensus         2 ~i~~P~~G~~~~~~----~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    2 EIKAPMLGEVMEEG----TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEESSSSEEEEEE----EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             EEECCCCccEEEec----ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            69999999999964    46789999999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK07051 hypothetical protein; Validated

Probab=99.68  E-value=3.8e-16  Score=120.51  Aligned_cols=76  Identities=26%  Similarity=0.513  Sum_probs=71.9

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|+||+.|+||+.+.   +..++++++||.|++||+||.||+||+..+|+|+.+|+|.++++++|+.|..||+|++|.
T Consensus         4 ~~~~ap~~g~~~~~~~---~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051          4 HEIVSPLPGTFYRRPS---PDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             cEEeCCCceEEEecCC---CCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            4699999999999865   578999999999999999999999999999999999999999999999999999999984

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.68  E-value=2.8e-16  Score=118.35  Aligned_cols=68  Identities=32%  Similarity=0.455  Sum_probs=65.5

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      .|+||+.|+++++          +|++||.|++||+||.||+||+..+|+||.+|+|.++++++|+.|..|++|++|.
T Consensus         4 ~v~a~~~G~i~~~----------~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889          4 DVRAEIVASVLEV----------VVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             EEeCCCCEEEEEE----------EeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            5999999999986          8999999999999999999999999999999999999999999999999999873

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.63  E-value=1.7e-15  Score=113.34  Aligned_cols=68  Identities=31%  Similarity=0.549  Sum_probs=65.5

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      .|.||+.|+|+++          ++++||.|++||+||.||+||+..+|.++.+|+|.++++++|+.|..||+|++|+
T Consensus         3 ~i~a~~~G~i~~~----------~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          3 KVYASMAGNVWKI----------VVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             eEeCCCCEEEEEE----------EeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            5899999999986          8999999999999999999999999999999999999999999999999999985

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.63  E-value=1.9e-14  Score=121.56  Aligned_cols=71  Identities=27%  Similarity=0.353  Sum_probs=67.2

Q ss_pred             CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      +...|+||+.|+++++          +|++||.|++||.|++||+|||.++|.||++|+|.++++++||.|..|++|++|
T Consensus        60 ~~~~v~Ap~~G~V~~i----------~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         60 GADAMPSPMPGTILKV----------LVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CCcEEECCCCEEEEEE----------EeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            3467999999999986          899999999999999999999999999999999999999999999999999987


Q ss_pred             e
Q 023091          280 L  280 (287)
Q Consensus       280 ~  280 (287)
                      .
T Consensus       130 ~  130 (130)
T PRK06549        130 G  130 (130)
T ss_pred             C
Confidence            3

>PRK06748 hypothetical protein; Validated

Probab=99.61  E-value=4.4e-15  Score=116.72  Aligned_cols=71  Identities=20%  Similarity=0.293  Sum_probs=66.8

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe-cCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ-FGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa-mK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      +..|+|||.|++.+|          ++++||.|++||+|+.||+ +|.+.+|+||.+|+|.+++++.||.|..|++|++|
T Consensus         4 ~~~v~sp~~G~I~~w----------~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I   73 (83)
T PRK06748          4 IEGVYSPCYGKVEKL----------FVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITV   73 (83)
T ss_pred             eeEEecCCcEEEEEE----------EeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence            457999999999986          8999999999999999999 67888999999999999999999999999999999


Q ss_pred             ec
Q 023091          280 LP  281 (287)
Q Consensus       280 ~p  281 (287)
                      +.
T Consensus        74 ~~   75 (83)
T PRK06748         74 RD   75 (83)
T ss_pred             EC
Confidence            74

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.59  E-value=4.3e-14  Score=122.33  Aligned_cols=69  Identities=32%  Similarity=0.485  Sum_probs=66.2

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|+||+.|++++|          +|++||.|++||.|++||+|||.++|+|+.+|+|.++++++|+.|..||+|++|.
T Consensus        85 ~~v~ap~~G~I~~~----------~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I~  153 (153)
T PRK05641         85 NVVTAPMPGKILRI----------LVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIELG  153 (153)
T ss_pred             CEEECCCCeEEEEE----------EeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEeC
Confidence            57999999999986          8999999999999999999999999999999999999999999999999999873

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.48  E-value=1.8e-13  Score=98.72  Aligned_cols=66  Identities=33%  Similarity=0.555  Sum_probs=63.2

Q ss_pred             EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      |+||+.|.|.++          +++.||.|++||.|+.|+++|+..+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus         2 v~a~~~G~v~~~----------~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           2 VTAPMPGTVVKV----------LVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             ccCCccEEEEEE----------EeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            789999999875          899999999999999999999999999999999999999999999999999975

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.37  E-value=2.1e-12  Score=132.08  Aligned_cols=69  Identities=28%  Similarity=0.336  Sum_probs=66.8

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      .|.|||.|+++++          +|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+.
T Consensus       527 ~v~apm~G~V~~~----------~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        527 DITVAIPGSIIAI----------HVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             eEecCcceEEEEE----------EeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            6999999999986          89999999999999999999999999999999999999999999999999999974

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.33  E-value=6.4e-12  Score=93.81  Aligned_cols=61  Identities=25%  Similarity=0.427  Sum_probs=57.2

Q ss_pred             ceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          209 VGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       209 vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      .|.|+++          ++++||.|++||.|+.||+||+..+|+||++|+|+++++++|+.|..|++|++|
T Consensus        13 ~g~~~~~----------~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          13 DGTVVKW----------LKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             CEEEEEE----------EcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            4667764          899999999999999999999999999999999999999999999999999975

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.32  E-value=2.9e-12  Score=118.76  Aligned_cols=60  Identities=18%  Similarity=0.299  Sum_probs=57.0

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+|++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..||+|++|.+.
T Consensus        20 ~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~   79 (371)
T PRK14875         20 AGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA   79 (371)
T ss_pred             EEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            346999999999999999999999999999999999999999999999999999999753

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=99.30  E-value=8.6e-12  Score=127.57  Aligned_cols=70  Identities=34%  Similarity=0.512  Sum_probs=67.4

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|+||+.|+|+++          +|++||.|++||+|+.||+|||.++|+||.+|+|.++++++|+.|++|++|++|+|
T Consensus       523 ~~V~Ap~~G~v~~~----------~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~  592 (592)
T PRK09282        523 GAVTSPMPGTVVKV----------KVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP  592 (592)
T ss_pred             ceEeCCCcEEEEEE----------EeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence            57999999999986          79999999999999999999999999999999999999999999999999999975

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.29  E-value=9.6e-12  Score=127.28  Aligned_cols=68  Identities=29%  Similarity=0.503  Sum_probs=65.8

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      ..|+|||.|+++++          +|++||.|++||+||.||+|||.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus       525 ~~V~Ap~~G~I~~~----------~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        525 EPVTAPLAGNIFKV----------IVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             ceEECCccEEEEEE----------EeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            47999999999986          899999999999999999999999999999999999999999999999999987

>TIGR02712 urea_carbox urea carboxylase

Probab=99.27  E-value=1.3e-11  Score=134.74  Aligned_cols=72  Identities=33%  Similarity=0.503  Sum_probs=68.2

Q ss_pred             CCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091          199 NGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA  278 (287)
Q Consensus       199 ~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~  278 (287)
                      .+...|.|||.|+++++          +|++||.|++||+||+||+|||.++|.||.+|+|+++++++|+.|..||+|+.
T Consensus      1130 ~~~~~v~a~~~G~v~~~----------~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~ 1199 (1201)
T TIGR02712      1130 EGAEQVESEYAGNFWKV----------LVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAV 1199 (1201)
T ss_pred             CCCcEEeCCceEEEEEE----------EeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEE
Confidence            34578999999999986          89999999999999999999999999999999999999999999999999998


Q ss_pred             Ee
Q 023091          279 VL  280 (287)
Q Consensus       279 I~  280 (287)
                      |+
T Consensus      1200 i~ 1201 (1201)
T TIGR02712      1200 LE 1201 (1201)
T ss_pred             eC
Confidence            74

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.26  E-value=1.2e-11  Score=126.40  Aligned_cols=65  Identities=32%  Similarity=0.490  Sum_probs=62.6

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPL  276 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL  276 (287)
                      ..|.|||+|+++++          +|++||.|++||+|++||+|||.++|.||.+|+|.++++++|+.|+.|++|
T Consensus       518 ~~v~ap~~G~v~~~----------~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       518 TPVTAPIAGSIVKV----------KVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             CeEeCCccEEEEEE----------EeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            46999999999986          899999999999999999999999999999999999999999999999976

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.25  E-value=1.5e-11  Score=122.51  Aligned_cols=77  Identities=19%  Similarity=0.338  Sum_probs=66.0

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|+-|..|.-...    +....|+|++||.|++||+||+||+||+.++|+||++|+|.+|++++||.|..|++|++|+.
T Consensus        92 ~~i~mP~lg~~~~e----G~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~  167 (463)
T PLN02226         92 VEAVVPHMGESITD----GTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK  167 (463)
T ss_pred             eEEecCCCCCCcce----EEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence            46777777742221    23445799999999999999999999999999999999999999999999999999999974


Q ss_pred             C
Q 023091          282 S  282 (287)
Q Consensus       282 ~  282 (287)
                      .
T Consensus       168 ~  168 (463)
T PLN02226        168 S  168 (463)
T ss_pred             C
Confidence            3

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.22  E-value=3e-11  Score=131.30  Aligned_cols=70  Identities=17%  Similarity=0.301  Sum_probs=66.6

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|.|||.|+++.+          +|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|+.|++|+.|+
T Consensus      1074 ~~~I~a~~~G~v~~~----------~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1074 PAHVGAPMPGVIIEV----------KVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             CceeecCCCcEEEEE----------EeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            357999999999985          8999999999999999999999999999999999999999999999999999884

This enzyme plays a role in gluconeogensis but not glycolysis.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.22  E-value=1.8e-11  Score=120.73  Aligned_cols=78  Identities=23%  Similarity=0.374  Sum_probs=68.4

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|+-|..|.-...    +....|+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|++|.
T Consensus        44 i~~i~~P~lg~~~~e----g~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~  119 (418)
T PTZ00144         44 IKVIKVPTMGDSISE----GTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID  119 (418)
T ss_pred             ceEEecCCCCCCcce----EEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence            357888887764332    2456689999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 023091          281 PS  282 (287)
Q Consensus       281 p~  282 (287)
                      ..
T Consensus       120 ~~  121 (418)
T PTZ00144        120 TG  121 (418)
T ss_pred             CC
Confidence            54

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=99.21  E-value=2.4e-11  Score=122.70  Aligned_cols=70  Identities=24%  Similarity=0.364  Sum_probs=66.7

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..+++||.|++...          .|++|+.|.+||+|+++|+|||.|.|+||.+|+|.++.+..|+.|..|++|+++++
T Consensus       576 ~~l~aPMpG~v~~v----------~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~  645 (645)
T COG4770         576 GELLAPMPGTVVSV----------AVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE  645 (645)
T ss_pred             CceecCCCceEEEE----------EecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence            46999999999986          79999999999999999999999999999999999999999999999999999863

>PRK12999 pyruvate carboxylase; Reviewed

Probab=99.20  E-value=5e-11  Score=129.67  Aligned_cols=70  Identities=31%  Similarity=0.496  Sum_probs=67.1

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|.|||.|++..+          +|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|+.||.|+.|++
T Consensus      1077 ~~v~apm~G~v~~i----------~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999       1077 GHVGAPMPGSVVTV----------LVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred             ceEeCCceEEEEEE----------EcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence            57999999999985          89999999999999999999999999999999999999999999999999999864

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.14  E-value=6.3e-11  Score=116.27  Aligned_cols=78  Identities=23%  Similarity=0.321  Sum_probs=68.3

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      +.|+-|..|.-+..    |....|++++||.|++||+|+.||++|...||.||++|+|.+|++++|+.|..|++|++|..
T Consensus         3 ~ei~mP~lge~~~E----G~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~   78 (404)
T COG0508           3 IEIKMPDLGETMTE----GTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE   78 (404)
T ss_pred             ceEecCCCCCccce----EEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence            35777777763332    35667899999999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 023091          282 SF  283 (287)
Q Consensus       282 ~~  283 (287)
                      ..
T Consensus        79 ~~   80 (404)
T COG0508          79 EG   80 (404)
T ss_pred             CC
Confidence            64

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.10  E-value=2.9e-10  Score=111.76  Aligned_cols=59  Identities=24%  Similarity=0.271  Sum_probs=56.5

Q ss_pred             CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      |+|++||.|++||.||.||+||+.++|+||++|+|.++++++|+.|..|++|++|+...
T Consensus        22 w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704         22 WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            59999999999999999999999999999999999999999999999999999998643

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=99.07  E-value=1.7e-10  Score=120.26  Aligned_cols=70  Identities=26%  Similarity=0.401  Sum_probs=66.3

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      -..|-|||.|++...          +|+.||.|++||+|.+||+|||...|.||++|+|.+++|.+|+.|+.|+.|+.++
T Consensus      1079 p~higApmpG~Vv~v----------~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1079 PGHIGAPMPGVVVEV----------KVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             ccccCCCCCCceEEE----------EEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            357999999999876          8999999999999999999999999999999999999999999999999999875

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.02  E-value=5.4e-10  Score=115.09  Aligned_cols=76  Identities=20%  Similarity=0.216  Sum_probs=68.6

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|+-|..| ...     +....|+|++||.|++||.||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus       206 ~~~~~~p~lg-~~e-----g~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~  279 (633)
T PRK11854        206 VKDVNVPDIG-GDE-----VEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE  279 (633)
T ss_pred             ceEEecCCCc-ccc-----eEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            3678899988 322     4567899999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 023091          281 PS  282 (287)
Q Consensus       281 p~  282 (287)
                      ..
T Consensus       280 ~~  281 (633)
T PRK11854        280 VE  281 (633)
T ss_pred             cC
Confidence            53

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.02  E-value=5.5e-10  Score=113.33  Aligned_cols=77  Identities=21%  Similarity=0.265  Sum_probs=70.8

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|+.|..|. ...    +....|+|++||.|++||.||.||+||+.++|+|+++|+|.+++++.|+.|..|++|+.|.
T Consensus       116 ~~~~~~P~~g~-~~e----g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~  190 (546)
T TIGR01348       116 VQEVTVPDIGD-IEK----VTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS  190 (546)
T ss_pred             ceEEeCCCCCC-cce----eEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence            36899999998 543    4678999999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 023091          281 PS  282 (287)
Q Consensus       281 p~  282 (287)
                      ..
T Consensus       191 ~~  192 (546)
T TIGR01348       191 VA  192 (546)
T ss_pred             cC
Confidence            54

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.01  E-value=1.1e-09  Score=107.69  Aligned_cols=58  Identities=28%  Similarity=0.329  Sum_probs=55.9

Q ss_pred             CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      |+|++||.|++||.||.||+||+.++|+|+++|+|.++++++|+.|..|++|++|+..
T Consensus        20 w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        20 WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            5999999999999999999999999999999999999999999999999999999754

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=98.97  E-value=1.5e-09  Score=111.11  Aligned_cols=77  Identities=21%  Similarity=0.273  Sum_probs=65.3

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|+-|..|.-...    +....|+|++||.|++||.||.||+||+.++|+|+++|+|.+|++++|+.|..|++|++|..
T Consensus       136 ~~~~~P~lg~~~~e----g~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~  211 (590)
T TIGR02927       136 TDIEMPELGESVTE----GTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGD  211 (590)
T ss_pred             eEEEcCCCCCCcce----EEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence            56777776632111    13345699999999999999999999999999999999999999999999999999999975


Q ss_pred             C
Q 023091          282 S  282 (287)
Q Consensus       282 ~  282 (287)
                      .
T Consensus       212 ~  212 (590)
T TIGR02927       212 A  212 (590)
T ss_pred             C
Confidence            3

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.97  E-value=1e-09  Score=111.16  Aligned_cols=77  Identities=25%  Similarity=0.311  Sum_probs=71.4

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|+.|..|. +..    +....|++++||.|++||.||.||+||+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus       119 ~~~~~~P~~g~-~~e----g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~  193 (547)
T PRK11855        119 VVEVKVPDIGE-ITE----VEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE  193 (547)
T ss_pred             ceEEecCCCCC-cce----eEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            46899999999 764    5678999999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 023091          281 PS  282 (287)
Q Consensus       281 p~  282 (287)
                      ..
T Consensus       194 ~~  195 (547)
T PRK11855        194 VA  195 (547)
T ss_pred             cC
Confidence            53

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=98.97  E-value=1e-09  Score=112.99  Aligned_cols=74  Identities=20%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|+.|-.| +..     +....|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|..|++|+.|+..
T Consensus         4 ~i~~P~lg-~~e-----g~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854          4 EIKVPDIG-ADE-----VEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             eEeeCCCC-Cce-----EEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            46777777 221     245668999999999999999999999999999999999999999999999999999999765

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=98.85  E-value=1.8e-09  Score=104.58  Aligned_cols=76  Identities=28%  Similarity=0.373  Sum_probs=65.0

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ++|.-|-.|.-...    |...+|..++||.|++++.||.||++|+..+|.||.+|+|+++||++||.|+.||.||.|++
T Consensus        73 vtv~vP~faESite----G~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~  148 (457)
T KOG0559|consen   73 VTVEVPPFAESITE----GDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP  148 (457)
T ss_pred             eEEecCCccccccc----chHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence            44555544443332    34566999999999999999999999999999999999999999999999999999999987

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=98.84  E-value=1.2e-08  Score=100.72  Aligned_cols=58  Identities=26%  Similarity=0.409  Sum_probs=55.7

Q ss_pred             CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      |+|++||.|++||.||.+|+||+.+++.|+.+|+|.++++++|+.|..|++|++|...
T Consensus        18 w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~   75 (416)
T PLN02528         18 WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVE   75 (416)
T ss_pred             EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecc
Confidence            5999999999999999999999999999999999999999999999999999999743

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.80  E-value=3.7e-08  Score=69.67  Aligned_cols=64  Identities=28%  Similarity=0.490  Sum_probs=58.5

Q ss_pred             CCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          206 SPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       206 AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      ++..|.+..+          +++.|+.+..|+.++.++++|+...+.++.+|+|.+..+.+|+.+..|++|++|
T Consensus        11 ~~~~g~i~~~----------~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          11 SMTEGTIVEW----------LVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             CCcEEEEEEE----------EECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            4555777664          899999999999999999999999999999999999999999999999999975

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.76  E-value=1.2e-08  Score=103.39  Aligned_cols=74  Identities=23%  Similarity=0.308  Sum_probs=63.0

Q ss_pred             EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      |+.|..|. ...    +....|+|++||.|++||+||.||+||+..+|.|+++|+|.++++++|+.|..|++|+.|.+.
T Consensus         5 i~~p~~g~-~~~----g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~   78 (547)
T PRK11855          5 FKVPDIGE-VVE----VEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAA   78 (547)
T ss_pred             eecCCcCC-Cce----EEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccc
Confidence            45555554 221    234457999999999999999999999999999999999999999999999999999999743

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.75  E-value=2.6e-08  Score=101.30  Aligned_cols=64  Identities=22%  Similarity=0.322  Sum_probs=59.8

Q ss_pred             cceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          208 TVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       208 ~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|++.+          |+|++||.|++||+||.||+||+.++|.|+++|+|.+++++.|+.|..|++|++|..
T Consensus        12 ~~g~i~~----------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~   75 (546)
T TIGR01348        12 EEGEVIE----------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV   75 (546)
T ss_pred             CceEEEE----------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence            4567766          499999999999999999999999999999999999999999999999999999975

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK01202 glycine cleavage system protein H; Provisional

Probab=98.72  E-value=3.1e-08  Score=83.20  Aligned_cols=58  Identities=29%  Similarity=0.501  Sum_probs=53.5

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEE---ecCCCCeec---CCC-eEEEEecCC
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL---LFDDGDAVG---FGD-PLIAVLPSF  283 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vvei---lv~dGd~Ve---~Gq-pL~~I~p~~  283 (287)
                      +.++|+.|++||++|.||++|.+.+|.||++|+|+++   +.++.+.|+   ||+ +|++|++..
T Consensus        44 lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~  108 (127)
T PRK01202         44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD  108 (127)
T ss_pred             cCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence            3468999999999999999999999999999999999   788999998   987 999999754

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=98.69  E-value=6.2e-08  Score=94.71  Aligned_cols=59  Identities=32%  Similarity=0.493  Sum_probs=56.2

Q ss_pred             CCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          224 SPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       224 ~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|+|++||.|++||.||.||+||+.++|.||.+|+|.++++++|+.|..|++|++|...
T Consensus        21 ~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~   79 (411)
T PRK11856         21 EWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE   79 (411)
T ss_pred             EEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecC
Confidence            35999999999999999999999999999999999999999999999999999999753

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.65  E-value=8.1e-08  Score=95.29  Aligned_cols=58  Identities=21%  Similarity=0.363  Sum_probs=55.6

Q ss_pred             CCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCe-ecCCCeEEEEec
Q 023091          224 SPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDA-VGFGDPLIAVLP  281 (287)
Q Consensus       224 ~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~-Ve~GqpL~~I~p  281 (287)
                      .|++++||.|++||.||.||++|+.++|.|+.+|+|.+++++.|+. |..|++|++|..
T Consensus        18 ~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~   76 (435)
T TIGR01349        18 KWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVE   76 (435)
T ss_pred             EEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEec
Confidence            3599999999999999999999999999999999999999999999 999999999964

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.63  E-value=3.9e-08  Score=101.53  Aligned_cols=70  Identities=27%  Similarity=0.335  Sum_probs=66.1

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|-|||.|++...          .|++|++|++||.||.+.+|||..-|.||.+|+|.++.+.+|+.|+.|+.++.|+.
T Consensus      1107 g~igAPMpG~viei----------kvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEI----------KVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred             ccccCCCCCceEEE----------EEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence            46999999999876          69999999999999999999999999999999999999999999999999998863

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=98.63  E-value=7.7e-08  Score=97.90  Aligned_cols=74  Identities=16%  Similarity=0.267  Sum_probs=62.2

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCCeEEEEe
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGDPLIAVL  280 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~GqpL~~I~  280 (287)
                      .|+-|-.|.-...    +....|++++||.|++||+||.||++|..++|+++.+|+|.+|++++|+ .|..|++|++|.
T Consensus       114 ei~mP~lg~~m~e----g~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~  188 (539)
T PLN02744        114 EIGMPSLSPTMTE----GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV  188 (539)
T ss_pred             eEeCCCCCCCcce----eEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence            4566665542221    2345579999999999999999999999999999999999999999996 799999999884

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.60  E-value=3.5e-08  Score=99.27  Aligned_cols=69  Identities=28%  Similarity=0.423  Sum_probs=65.2

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..+.+||.|.+...          +|+.||+|++||.+|.+++|||.+-++||.+|+|..+.++.|+.|.-|.+|++++
T Consensus       602 ~v~~aPMpG~Iekv----------~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  602 GVIVAPMPGIIEKV----------LVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CceecCCCCeeeee----------eccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            46899999998875          9999999999999999999999999999999999999999999999999999863

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.57  E-value=1.7e-07  Score=77.31  Aligned_cols=58  Identities=26%  Similarity=0.340  Sum_probs=50.7

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEE---ecCCCCeec---CCC-eEEEEecCC
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL---LFDDGDAVG---FGD-PLIAVLPSF  283 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vvei---lv~dGd~Ve---~Gq-pL~~I~p~~  283 (287)
                      +-++|+.|++||.||.||++|+..+|.||++|+|+++   +.++-+.++   ||+ +|++|++..
T Consensus        37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~~  101 (110)
T TIGR03077        37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLDE  101 (110)
T ss_pred             CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECC
Confidence            4478999999999999999999999999999999999   566666665   776 999999654

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=98.55  E-value=2.1e-07  Score=93.13  Aligned_cols=62  Identities=24%  Similarity=0.356  Sum_probs=57.1

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCCeEEEEecCCC
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGDPLIAVLPSFH  284 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~GqpL~~I~p~~~  284 (287)
                      ..|++++||.|++||.|+.||++|+..+|.|+.+|+|.+++++.|+ .|..|++|++|.....
T Consensus        20 ~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~   82 (464)
T PRK11892         20 AKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE   82 (464)
T ss_pred             EEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence            3469999999999999999999999999999999999999999995 7999999999976443

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=98.54  E-value=1e-07  Score=97.79  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=62.3

Q ss_pred             EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      |+.|-.|.-...    +....|+|++||.|+.||+||.||+||+.++|.|+.+|+|.++++++|+.|..|+.|++|..
T Consensus         5 i~~P~lg~~~~e----g~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~   78 (590)
T TIGR02927         5 VEMPALGESVTE----GTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE   78 (590)
T ss_pred             EECCCCCCCccE----EEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence            556666631111    12345799999999999999999999999999999999999999999999999999998864

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK00624 glycine cleavage system protein H; Provisional

Probab=98.49  E-value=3.2e-07  Score=76.18  Aligned_cols=58  Identities=26%  Similarity=0.327  Sum_probs=51.5

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEE---ecCCCCeec---CCC-eEEEEecCC
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL---LFDDGDAVG---FGD-PLIAVLPSF  283 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vvei---lv~dGd~Ve---~Gq-pL~~I~p~~  283 (287)
                      +-++|+.|++||.||.||++|...+|.||++|+|+++   +.++-+.+.   ||+ +|++|++..
T Consensus        39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~  103 (114)
T PRK00624         39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDE  103 (114)
T ss_pred             CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECC
Confidence            3488999999999999999999999999999999999   677777765   777 999999754

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=98.44  E-value=3.1e-07  Score=91.31  Aligned_cols=64  Identities=25%  Similarity=0.386  Sum_probs=59.0

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCC-CeecCCCeEEEEecCCCCC
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDG-DAVGFGDPLIAVLPSFHDI  286 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dG-d~Ve~GqpL~~I~p~~~~~  286 (287)
                      ..|..++||++.+||+||.||++|...++++..+|.+.+||+++| ..|..|.+|+.|-....||
T Consensus        56 vsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e~di  120 (470)
T KOG0557|consen   56 VSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDEDDI  120 (470)
T ss_pred             eeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEecccccH
Confidence            345889999999999999999999999999999999999999999 8899999999998766655

>TIGR00527 gcvH glycine cleavage system H protein

Probab=98.31  E-value=1.2e-06  Score=73.70  Aligned_cols=56  Identities=21%  Similarity=0.299  Sum_probs=46.6

Q ss_pred             cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecC---CCCeec---CCC-eEEEEecCC
Q 023091          228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFD---DGDAVG---FGD-PLIAVLPSF  283 (287)
Q Consensus       228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~---dGd~Ve---~Gq-pL~~I~p~~  283 (287)
                      ++|+.|++||++|.||+||+..+|.||++|+|++++-.   +-+.+.   ||+ +|++|++..
T Consensus        45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~  107 (127)
T TIGR00527        45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSD  107 (127)
T ss_pred             CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCC
Confidence            68999999999999999999999999999999999732   223332   555 999999754

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.27  E-value=1.5e-06  Score=69.07  Aligned_cols=54  Identities=20%  Similarity=0.245  Sum_probs=47.2

Q ss_pred             CCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC
Q 023091          206 SPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD  268 (287)
Q Consensus       206 AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd  268 (287)
                      ..+.|.++..         ++.++|+.|++||.||.||++|+..+|.||.+|+|++++.+-++
T Consensus        25 ~~~lG~i~~i---------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~   78 (96)
T cd06848          25 QDLLGDIVFV---------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD   78 (96)
T ss_pred             HhhCCCEEEE---------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence            3578888876         47788999999999999999999999999999999999865554

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>PRK13380 glycine cleavage system protein H; Provisional

Probab=98.26  E-value=2.1e-06  Score=73.90  Aligned_cols=71  Identities=18%  Similarity=0.251  Sum_probs=56.5

Q ss_pred             EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCC---Ceec---CCC-eE
Q 023091          204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDG---DAVG---FGD-PL  276 (287)
Q Consensus       204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dG---d~Ve---~Gq-pL  276 (287)
                      ....+.|.+...-         +-++|+.|++||.++.||+||+..+|.||++|+|++++.+-.   +.++   ||+ +|
T Consensus        38 ~aq~~lG~I~~v~---------lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl  108 (144)
T PRK13380         38 YAQTMAGDVVFVR---------LKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWF  108 (144)
T ss_pred             HHHHhcCCEEEEE---------cCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeE
Confidence            3456788876652         346899999999999999999999999999999999985433   2332   665 99


Q ss_pred             EEEecCC
Q 023091          277 IAVLPSF  283 (287)
Q Consensus       277 ~~I~p~~  283 (287)
                      ++|++.+
T Consensus       109 ~~v~~~d  115 (144)
T PRK13380        109 FRFKPAN  115 (144)
T ss_pred             EEEEECC
Confidence            9998764

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=98.18  E-value=1.1e-05  Score=79.04  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=62.1

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCc-ccCCCEEcCCCEEEEEEec----------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPI-CKEGDVIKEGQTIGYLDQF----------------------------------  245 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~-V~vGd~Vk~GqvL~iIEam----------------------------------  245 (287)
                      ...|.++..|.+.+.          + +++||.|++||+|+.|+.-                                  
T Consensus       123 ~~~v~arv~G~V~~l----------~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i  192 (409)
T PRK09783        123 YAIVQARAAGFIDKV----------YPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGM  192 (409)
T ss_pred             eEEEeCCcCEEEEEE----------EecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Confidence            467999999998875          5 8999999999999999821                                  


Q ss_pred             --------------CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          246 --------------GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       246 --------------K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                                    .....|+||++|+|.+..++.|+.|..|++||.|...
T Consensus       193 ~~~~i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~  243 (409)
T PRK09783        193 PEADIRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM  243 (409)
T ss_pred             CHHHHHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcC
Confidence                          0124799999999999999999999999999999654

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=98.14  E-value=9.2e-06  Score=76.00  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=32.2

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      ..|+||++|+|..+.++.|+.|..|++|+.|.+.+
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~  239 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE  239 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence            36999999999999999999999999999998653

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=98.05  E-value=1.3e-05  Score=73.61  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe----------------------------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT----------------------------------  247 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~----------------------------------  247 (287)
                      ..|.+|..|.+...          +|++||.|++||+|..|+.-..                                  
T Consensus        27 ~~v~a~~~G~V~~i----------~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~   96 (322)
T TIGR01730        27 ADLAAEVAGKITKI----------SVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKR   96 (322)
T ss_pred             EEEEccccEEEEEE----------EcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            57999999999864          7999999999999999974211                                  


Q ss_pred             -------------------------------------eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 -------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 -------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                                                           ...|+||++|+|..+.+..|+.|..|++|+.|...
T Consensus        97 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~  168 (322)
T TIGR01730        97 NAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL  168 (322)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence                                                 23699999999999999999999999999998754

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.98  E-value=2.4e-05  Score=74.42  Aligned_cols=35  Identities=17%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      ..|+||++|+|.++.++.|+.|..|++|+.|.+.+
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~  243 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD  243 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence            36999999999999999999999999999997653

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=97.91  E-value=2.3e-05  Score=66.74  Aligned_cols=58  Identities=19%  Similarity=0.417  Sum_probs=50.3

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCC
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSF  283 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~  283 (287)
                      +-++|+.|++|+.+|.||+-|.-.+|+||++|+|++++   .++-+.|+   ||+ +||+|++.+
T Consensus        46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk~~d  110 (131)
T COG0509          46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLKPAD  110 (131)
T ss_pred             cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhcChhhhccCCCCCceEEEEeeCC
Confidence            45899999999999999999999999999999999997   44445555   786 999999875

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=97.85  E-value=7.3e-06  Score=79.69  Aligned_cols=80  Identities=19%  Similarity=0.245  Sum_probs=68.3

Q ss_pred             CCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091          199 NGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA  278 (287)
Q Consensus       199 ~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~  278 (287)
                      .+.+.++--..|.-.+.-    ...+|||++||.|.+=|.||.++++|...+|++-++|.|.+|.-+-+|....|++|..
T Consensus        62 ~gvv~f~LsdiGEGI~Ev----~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd  137 (474)
T KOG0558|consen   62 SGVVQFKLSDIGEGIAEV----TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVD  137 (474)
T ss_pred             cceEEEEhhhccccceee----eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceee
Confidence            344556666667644432    3578999999999999999999999999999999999999999999999999999999


Q ss_pred             EecC
Q 023091          279 VLPS  282 (287)
Q Consensus       279 I~p~  282 (287)
                      ++..
T Consensus       138 ~eve  141 (474)
T KOG0558|consen  138 LEVE  141 (474)
T ss_pred             eeec
Confidence            8754

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=97.85  E-value=7e-05  Score=70.13  Aligned_cols=67  Identities=24%  Similarity=0.274  Sum_probs=59.7

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|+||..|.|+.           +++.||.|++||+|+.|..    ++|+||.+|+|. =++.||-.|..|.-|..|.
T Consensus       164 Er~IrAp~~Gi~~~-----------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dID  227 (256)
T TIGR03309       164 ERVLRAPADGIVTP-----------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVD  227 (256)
T ss_pred             eEEEECCCCeEEee-----------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEEC
Confidence            36899999999985           6899999999999999975    799999999875 5578999999999999998


Q ss_pred             cCC
Q 023091          281 PSF  283 (287)
Q Consensus       281 p~~  283 (287)
                      |-.
T Consensus       228 PR~  230 (256)
T TIGR03309       228 PRG  230 (256)
T ss_pred             CCC
Confidence            754

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.85  E-value=5.6e-05  Score=71.55  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=62.0

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC----------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG----------------------------------  246 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK----------------------------------  246 (287)
                      ...|.++..|.+...          +|++||.|++||+|+.|+.-.                                  
T Consensus        47 ~v~i~~~v~G~V~~v----------~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~  116 (310)
T PRK10559         47 VVAIAPDVSGLITQV----------NVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGV  116 (310)
T ss_pred             EEEEccCCceEEEEE----------EeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            467999999999875          799999999999999998521                                  


Q ss_pred             ------------------------------------eeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          247 ------------------------------------TELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       247 ------------------------------------~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                                                          -...|+||++|+|.++.++.|+.|..|++|+.|-..
T Consensus       117 ~aiS~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~  188 (310)
T PRK10559        117 QAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ  188 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence                                                024699999999999999999999999999987643

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.80  E-value=7e-05  Score=72.31  Aligned_cols=71  Identities=23%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---------------------------------  247 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---------------------------------  247 (287)
                      ...|.+++.|.+...          +|++||.|++||+|+.|+....                                 
T Consensus        63 ~~~l~~~v~G~V~~v----------~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~  132 (385)
T PRK09578         63 QAEVRARVAGIVTAR----------TYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVR  132 (385)
T ss_pred             EEEEeccCcEEEEEE----------ECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999775          7999999999999999985211                                 


Q ss_pred             --------------------------------------eeeeecCCCeEEEEEecCCCCeecCC--CeEEEEec
Q 023091          248 --------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFG--DPLIAVLP  281 (287)
Q Consensus       248 --------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~G--qpL~~I~p  281 (287)
                                                            ...|+||++|+|.+.+++.|+.|..|  ++|+.|..
T Consensus       133 ~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~  206 (385)
T PRK09578        133 DRAVSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQ  206 (385)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEe
Confidence                                                  13799999999999999999999885  58998864

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.79  E-value=7.5e-05  Score=72.81  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+||++|+|..+.++.|+.|..|++||.|-+.
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~  249 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPA  249 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeC
Confidence            3699999999999999999999999999998764

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.78  E-value=7.1e-05  Score=70.63  Aligned_cols=34  Identities=12%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+||++|+|..+.+..|+.|..|++|+.|.+.
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~  237 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT  237 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence            4799999999999999999999999999999754

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.65  E-value=0.00017  Score=69.70  Aligned_cols=71  Identities=20%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC----------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG----------------------------------  246 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK----------------------------------  246 (287)
                      ...|.++..|.+.+.          ++++||.|++||+|+.|+.-.                                  
T Consensus        61 ~~~l~~~v~G~V~~i----------~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~  130 (385)
T PRK09859         61 VAEIRPQVGGIIIKR----------NFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLK  130 (385)
T ss_pred             EEEEeccCcEEEEEE----------EcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457999999998874          799999999999999998420                                  


Q ss_pred             -------------------------------------eeeeeecCCCeEEEEEecCCCCeecCCC--eEEEEec
Q 023091          247 -------------------------------------TELPVKSDVAGEVLKLLFDDGDAVGFGD--PLIAVLP  281 (287)
Q Consensus       247 -------------------------------------~~~eV~Ap~sG~Vveilv~dGd~Ve~Gq--pL~~I~p  281 (287)
                                                           -...|+||++|+|.+.+++.|+.|..|+  +||.|..
T Consensus       131 ~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~  204 (385)
T PRK09859        131 TNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQR  204 (385)
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEe
Confidence                                                 1147999999999999999999999985  6888753

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.64  E-value=0.00019  Score=69.93  Aligned_cols=71  Identities=24%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---------------------------------  247 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---------------------------------  247 (287)
                      ...|.+...|.+.+.          +|++||.|++||+|+.|+....                                 
T Consensus        65 ~~~l~a~vsG~V~~v----------~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~  134 (397)
T PRK15030         65 IAEVRPQVSGIILKR----------NFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG  134 (397)
T ss_pred             EEEEEecCcEEEEEE----------EcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999875          7999999999999999974210                                 


Q ss_pred             --------------------------------------eeeeecCCCeEEEEEecCCCCeecCCCe--EEEEec
Q 023091          248 --------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDP--LIAVLP  281 (287)
Q Consensus       248 --------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~Gqp--L~~I~p  281 (287)
                                                            ...|+||++|+|.+..++.|+.|..|++  ||.|..
T Consensus       135 ~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~  208 (397)
T PRK15030        135 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ  208 (397)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence                                                  1359999999999999999999999985  787753

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.64  E-value=9.7e-05  Score=52.40  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=31.6

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.++++|+|.++++++|+.|..||+|+++...
T Consensus         3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~   36 (50)
T PF13533_consen    3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP   36 (50)
T ss_pred             EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence            4689999999999999999999999999999864

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.64  E-value=8.9e-05  Score=82.15  Aligned_cols=73  Identities=19%  Similarity=0.392  Sum_probs=65.4

Q ss_pred             CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      +-..+++|..|++.+.          .|+.|+.|.+||+-+.||.|||..++.|..+|+| ..+.++|+.++.|+.|+++
T Consensus       684 Dpt~LrsPs~GKLl~y----------lVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL  752 (2196)
T KOG0368|consen  684 DPTVLRSPSPGKLLQY----------LVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKL  752 (2196)
T ss_pred             CcceecCCCCccceEE----------EecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEe
Confidence            3457899999999885          8999999999999999999999999999999976 5678999999999999998


Q ss_pred             ecCC
Q 023091          280 LPSF  283 (287)
Q Consensus       280 ~p~~  283 (287)
                      .-.+
T Consensus       753 ~lDd  756 (2196)
T KOG0368|consen  753 TLDD  756 (2196)
T ss_pred             ecCC
Confidence            7443

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.62  E-value=0.00018  Score=60.05  Aligned_cols=58  Identities=22%  Similarity=0.350  Sum_probs=43.4

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---C-CCeEEEEecCC
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---F-GDPLIAVLPSF  283 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~-GqpL~~I~p~~  283 (287)
                      +-++|+.|++|+.+|.||+.|...++.||++|+|++++   .++-+.+.   | ..+|+.|++.+
T Consensus        38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~~d  102 (122)
T PF01597_consen   38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKPSD  102 (122)
T ss_dssp             -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEESC
T ss_pred             EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChHHhccCCCCCCeEEEEEeCC
Confidence            45889999999999999999999999999999999997   33333332   5 44899999864

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.52  E-value=0.00028  Score=67.71  Aligned_cols=72  Identities=21%  Similarity=0.231  Sum_probs=59.9

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---------------------------------  247 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---------------------------------  247 (287)
                      ...|.+++.|.+...          ++++||.|++||+|+.|+....                                 
T Consensus        61 ~~~l~a~~~G~V~~v----------~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~  130 (370)
T PRK11578         61 KVDVGAQVSGQLKTL----------SVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLS  130 (370)
T ss_pred             EEEEecccceEEEEE----------EcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999875          7999999999999999986210                                 


Q ss_pred             ----------------------------------------------------eeeeecCCCeEEEEEecCCCCeecCCC-
Q 023091          248 ----------------------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGD-  274 (287)
Q Consensus       248 ----------------------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~Gq-  274 (287)
                                                                          ...|+||++|+|.++.+..|+.|..|+ 
T Consensus       131 r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~  210 (370)
T PRK11578        131 RQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ  210 (370)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccC
Confidence                                                                126999999999999999999997764 


Q ss_pred             --eEEEEecC
Q 023091          275 --PLIAVLPS  282 (287)
Q Consensus       275 --pL~~I~p~  282 (287)
                        +|+.|...
T Consensus       211 ~~~l~~i~~~  220 (370)
T PRK11578        211 APNILTLADM  220 (370)
T ss_pred             CceEEEEecC
Confidence              78887543

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.50  E-value=0.00064  Score=64.40  Aligned_cols=66  Identities=24%  Similarity=0.228  Sum_probs=56.2

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe---cCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ---FGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI  277 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa---mK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~  277 (287)
                      ...|+||..|.|+.           .++.||.|++||+|+.|=.   .....+|+||.+|+|.-+.  ..-.|..|++|+
T Consensus       229 ~~~v~A~~~Gl~~~-----------~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~  295 (298)
T cd06253         229 VVYVNAETSGIFVP-----------AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVA  295 (298)
T ss_pred             eEEEEcCCCeEEEE-----------CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEE
Confidence            56899999999985           6899999999999998854   2346789999999998665  557899999999


Q ss_pred             EE
Q 023091          278 AV  279 (287)
Q Consensus       278 ~I  279 (287)
                      +|
T Consensus       296 ~i  297 (298)
T cd06253         296 RI  297 (298)
T ss_pred             Ee
Confidence            87

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.43  E-value=0.00041  Score=68.24  Aligned_cols=72  Identities=21%  Similarity=0.267  Sum_probs=60.2

Q ss_pred             CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC---------------------------------
Q 023091          200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG---------------------------------  246 (287)
Q Consensus       200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK---------------------------------  246 (287)
                      +...|.++..|.+...          ++++||.|++||+|+.|+...                                 
T Consensus        86 ~~v~v~~~vsG~V~~i----------~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~  155 (415)
T PRK11556         86 NTVTVRSRVDGQLMAL----------HFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLA  155 (415)
T ss_pred             eEEEEEccccEEEEEE----------ECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468999999998875          799999999999999996421                                 


Q ss_pred             --------------------------------------eeeeeecCCCeEEEEEecCCCCeecCCC--eEEEEec
Q 023091          247 --------------------------------------TELPVKSDVAGEVLKLLFDDGDAVGFGD--PLIAVLP  281 (287)
Q Consensus       247 --------------------------------------~~~eV~Ap~sG~Vveilv~dGd~Ve~Gq--pL~~I~p  281 (287)
                                                            -...|+||++|+|..+.++.|+.|..|+  +|+.|..
T Consensus       156 ~~g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~  230 (415)
T PRK11556        156 KTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ  230 (415)
T ss_pred             hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence                                                  0237999999999999999999999984  7887753

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.38  E-value=0.00029  Score=64.87  Aligned_cols=32  Identities=41%  Similarity=0.529  Sum_probs=23.5

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD  243 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE  243 (287)
                      ...|.+|..|.+ ..          +|++||.|++||+|+.|+
T Consensus        21 ~~~v~~~~~G~v-~~----------~v~~G~~V~kG~~L~~ld   52 (328)
T PF12700_consen   21 EVSVSAPVSGRV-SV----------NVKEGDKVKKGQVLAELD   52 (328)
T ss_dssp             EEEE--SS-EEE-EE-----------S-TTSEEETT-EEEEEE
T ss_pred             EEEEECCCCEEE-EE----------EeCCcCEECCCCEEEEEE
Confidence            367999999999 65          899999999999999998

...

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.33  E-value=0.0014  Score=62.31  Aligned_cols=68  Identities=24%  Similarity=0.315  Sum_probs=55.9

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec----CeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPL  276 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL  276 (287)
                      ...|+||..|.|+.           +++.||.|++||+|+.|-..    ....+|+||.+|+|.-+.  ..-.|..|++|
T Consensus       244 ~~~v~A~~~G~~~~-----------~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l  310 (316)
T cd06252         244 RCYVFAPHPGLFEP-----------LVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCL  310 (316)
T ss_pred             cEEEEcCCCeEEEE-----------ecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEE
Confidence            36899999999984           69999999999999998653    345789999999998654  33569999999


Q ss_pred             EEEec
Q 023091          277 IAVLP  281 (287)
Q Consensus       277 ~~I~p  281 (287)
                      +.|-.
T Consensus       311 ~~i~~  315 (316)
T cd06252         311 AVLAA  315 (316)
T ss_pred             EEEec
Confidence            98753

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.25  E-value=0.00047  Score=48.88  Aligned_cols=36  Identities=28%  Similarity=0.400  Sum_probs=31.7

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT  247 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~  247 (287)
                      ..|.+|..|.+...          +|++||.|++||+|+.|+....
T Consensus         3 ~~I~~~~~G~V~~v----------~V~~G~~VkkGd~L~~ld~~~~   38 (50)
T PF13533_consen    3 VTIQAPVSGRVESV----------YVKEGQQVKKGDVLLVLDSPDL   38 (50)
T ss_pred             EEEeCCCCEEEEEE----------EecCCCEEcCCCEEEEECcHHH
Confidence            46999999999875          8999999999999999986544

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.25  E-value=0.0016  Score=61.23  Aligned_cols=65  Identities=31%  Similarity=0.387  Sum_probs=53.4

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec--CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF--GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam--K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      ..|+||..|.|+.           .++.||.|++||+|+.|...  ....+|+||.+|+|.-+.  ..-.|..|+.|+.|
T Consensus       220 ~~v~A~~~G~~~~-----------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i  286 (287)
T cd06251         220 VWVRAPQGGLLRS-----------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI  286 (287)
T ss_pred             eEEecCCCeEEEE-----------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence            5799999999985           58999999999999999642  223689999999996554  55578899999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.21  E-value=0.0013  Score=61.63  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             eeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      .|+||++|+|..+.+..|+.|.. ++|+.|.+..
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence            58999999999999999999985 8999887643

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=97.17  E-value=0.0008  Score=50.48  Aligned_cols=35  Identities=26%  Similarity=0.575  Sum_probs=31.9

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      +..|+||.+|+|.++++++||.|+.||+|+.++..
T Consensus         2 ~~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~   36 (71)
T PRK05889          2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESM   36 (71)
T ss_pred             CcEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEec
Confidence            44699999999999999999999999999998754

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=97.10  E-value=0.0025  Score=61.99  Aligned_cols=67  Identities=19%  Similarity=0.355  Sum_probs=53.5

Q ss_pred             CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe-cC-eeee--eecCCCeEEEEEecCCCCeecCCCe
Q 023091          200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ-FG-TELP--VKSDVAGEVLKLLFDDGDAVGFGDP  275 (287)
Q Consensus       200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa-mK-~~~e--V~Ap~sG~Vveilv~dGd~Ve~Gqp  275 (287)
                      +...|+||..|.|+.           +++.||.|++||.|+.|-. .. ...+  |+||.+|+|.-+.  ..-.|..|++
T Consensus       288 ~~~~v~Ap~~Gl~~~-----------~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~  354 (359)
T cd06250         288 GVEMLYAPAGGMVVY-----------RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDE  354 (359)
T ss_pred             CcEEEeCCCCeEEEE-----------ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCe
Confidence            346899999999985           6899999999999998853 21 1123  5999999997654  6678999999


Q ss_pred             EEEE
Q 023091          276 LIAV  279 (287)
Q Consensus       276 L~~I  279 (287)
                      |+.|
T Consensus       355 l~~I  358 (359)
T cd06250         355 LAKI  358 (359)
T ss_pred             EEEe
Confidence            9987

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=97.05  E-value=0.0033  Score=60.54  Aligned_cols=66  Identities=14%  Similarity=0.178  Sum_probs=54.7

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec----CeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPL  276 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL  276 (287)
                      ...|+||..|.|+.           .++.||.|++||.|+.|-..    ....+|+||.+|+|.-+.  ..-.|..|+.|
T Consensus       255 ~~~v~Ap~~Gi~~~-----------~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l  321 (325)
T TIGR02994       255 DCFIFAEDDGLIEF-----------MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCI  321 (325)
T ss_pred             CeEEEcCCCeEEEE-----------ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEE
Confidence            35799999999985           68999999999999988653    245789999999998754  45678889998


Q ss_pred             EEE
Q 023091          277 IAV  279 (287)
Q Consensus       277 ~~I  279 (287)
                      +.|
T Consensus       322 ~~i  324 (325)
T TIGR02994       322 AVL  324 (325)
T ss_pred             EEe
Confidence            876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=97.05  E-value=0.0008  Score=54.76  Aligned_cols=40  Identities=30%  Similarity=0.480  Sum_probs=35.5

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL  263 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil  263 (287)
                      ..+.|++||.|++||.|+..+. -+...|.|+++|+|+.|.
T Consensus        42 ~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   42 AEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             ceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence            5689999999999999999875 556799999999999985

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.92  E-value=0.0036  Score=59.84  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=29.9

Q ss_pred             eeecCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 023091          250 PVKSDVAGEVLKLLF-DDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       250 eV~Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|+||++|+|..+.+ ..|+.|..|++|+.|.+.
T Consensus       273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~  306 (423)
T TIGR01843       273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE  306 (423)
T ss_pred             EEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence            499999999999876 799999999999999864

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.91  E-value=0.0038  Score=58.60  Aligned_cols=65  Identities=28%  Similarity=0.374  Sum_probs=51.3

Q ss_pred             CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe--cCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091          200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ--FGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI  277 (287)
Q Consensus       200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa--mK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~  277 (287)
                      +...++||..|.|+.           +++.||.|++||+|+.|-.  .....+|+||.+|.|.-+..  .-.|..|++|+
T Consensus       222 ~~~~v~Ap~~G~~~~-----------~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~v~~G~~l~  288 (288)
T cd06254         222 DVYYVTSPASGLWYP-----------FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLPVRKGDPLA  288 (288)
T ss_pred             CCEEEecCCCeEEEE-----------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCccCCCCccC
Confidence            346899999999984           6899999999999998842  23457899999999987653  34667777663

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.79  E-value=0.0028  Score=47.10  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=32.3

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      |..|.||..|+|.+++++.|+.|+.||+|+.++..
T Consensus         1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~   35 (70)
T PRK08225          1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILESM   35 (70)
T ss_pred             CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            46799999999999999999999999999998854

>PRK06748 hypothetical protein; Validated

Probab=96.67  E-value=0.0041  Score=49.16  Aligned_cols=34  Identities=24%  Similarity=0.084  Sum_probs=31.9

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..-|+||..|+|.+++++.||.|+.||+|+.|+.
T Consensus         4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET   37 (83)
T PRK06748          4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIET   37 (83)
T ss_pred             eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            3459999999999999999999999999999997

>PRK12784 hypothetical protein; Provisional

Probab=96.55  E-value=0.01  Score=46.70  Aligned_cols=71  Identities=11%  Similarity=0.084  Sum_probs=63.7

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe-eeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT-ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~-~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|.||--|++-..          |+.+++.|-+.+.|..|+.|.. +..|.--++|.|.-+.|+.||.|..+..|+.++
T Consensus         6 e~iyS~~~G~Veki----------fi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e   75 (84)
T PRK12784          6 EEICSSYEGKVEEI----------FVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE   75 (84)
T ss_pred             hhhcCccccEEEEE----------EEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence            35899999999875          9999999999999999998874 456888999999999999999999999999998


Q ss_pred             cC
Q 023091          281 PS  282 (287)
Q Consensus       281 p~  282 (287)
                      ..
T Consensus        76 dD   77 (84)
T PRK12784         76 DD   77 (84)
T ss_pred             ec
Confidence            53

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=96.45  E-value=0.0052  Score=43.77  Aligned_cols=33  Identities=33%  Similarity=0.574  Sum_probs=30.3

Q ss_pred             eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|+||++|+|.+++++.|+.|+.||+|+.++..
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~   33 (67)
T cd06850           1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM   33 (67)
T ss_pred             CccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence            378999999999999999999999999999753

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=95.97  E-value=0.012  Score=44.55  Aligned_cols=34  Identities=35%  Similarity=0.615  Sum_probs=29.3

Q ss_pred             eeeecCCCeEEEE------EecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLK------LLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vve------ilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ++|++|..|...+      +++++|+.|+.||+|+.|+..
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~   40 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETM   40 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESS
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcC
Confidence            3688888887665      999999999999999999864

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.96  E-value=0.014  Score=49.70  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+||.+|+|.++++++||.|+.||+|+.++..
T Consensus        62 ~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam   95 (130)
T PRK06549         62 DAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM   95 (130)
T ss_pred             cEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            5689999999999999999999999999999854

>PF13437 HlyD_3: HlyD family secretion protein

Probab=95.93  E-value=0.014  Score=45.73  Aligned_cols=33  Identities=21%  Similarity=0.517  Sum_probs=30.7

Q ss_pred             eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|+||++|+|..+.++.|+.|..|++|+.|.+.
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            489999999999999999999999999999865

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=95.89  E-value=0.012  Score=50.18  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ...|+||..|++.+++|+.||.|..||.|+.|+.
T Consensus        70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA  103 (140)
T COG0511          70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA  103 (140)
T ss_pred             CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence            3679999999999999999999999999999984

>COG3608 Predicted deacylase [General function prediction only]

Probab=95.77  E-value=0.031  Score=54.41  Aligned_cols=66  Identities=20%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec---CeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF---GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA  278 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam---K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~  278 (287)
                      ..|+||..|.|.-           .|+.||.|++||+|+.|-.+   +...||+|+++|+|..+.  .--.|+.|+.|+.
T Consensus       257 ~~i~Ap~~G~v~~-----------~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~  323 (331)
T COG3608         257 EMIRAPAGGLVEF-----------LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKV  323 (331)
T ss_pred             ceeecCCCceEEE-----------eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeee
Confidence            3578888887753           69999999999999999876   566799999999998775  2234555655555


Q ss_pred             Ee
Q 023091          279 VL  280 (287)
Q Consensus       279 I~  280 (287)
                      +.
T Consensus       324 v~  325 (331)
T COG3608         324 VG  325 (331)
T ss_pred             ec
Confidence            43

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.76  E-value=0.041  Score=51.95  Aligned_cols=51  Identities=24%  Similarity=0.260  Sum_probs=42.5

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC--eeeeeecCCCeEEEEE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG--TELPVKSDVAGEVLKL  262 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK--~~~eV~Ap~sG~Vvei  262 (287)
                      ...|+||..|.|+.           .++.||.|++||.|+.|-..=  ...+++||.+|+|.-+
T Consensus       231 ~~~v~Ap~~Gi~~~-----------~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         231 RDWVAAIHGGLFEP-----------SVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             eEEEecCCCeEEEE-----------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            46899999999985           589999999999999885321  2357999999999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=95.73  E-value=0.044  Score=48.60  Aligned_cols=65  Identities=25%  Similarity=0.373  Sum_probs=50.4

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL-----------------  260 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv-----------------  260 (287)
                      ..|.||+.|++..           +-++-|.|=.    |+-+++.=.   ...|.||++|+|.                 
T Consensus        21 ~~i~aP~~G~vi~-----------L~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~   86 (169)
T PRK09439         21 IEIIAPLSGEIVN-----------IEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGV   86 (169)
T ss_pred             eEEEecCCeEEEE-----------hHHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCc
Confidence            5689999999885           3455555544    777776543   3679999999887                 


Q ss_pred             ------------------EEecCCCCeecCCCeEEEEe
Q 023091          261 ------------------KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 ------------------eilv~dGd~Ve~GqpL~~I~  280 (287)
                                        +.+++.||.|..||+|+++.
T Consensus        87 eiLIHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D  124 (169)
T PRK09439         87 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD  124 (169)
T ss_pred             EEEEEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence                              55688999999999999986

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=95.65  E-value=0.02  Score=54.51  Aligned_cols=41  Identities=32%  Similarity=0.513  Sum_probs=36.0

Q ss_pred             EEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       240 ~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ++|++.  ...|.++++|+|.++++++||.|..||+|++|.+.
T Consensus        42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   82 (346)
T PRK10476         42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR   82 (346)
T ss_pred             eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence            556653  57899999999999999999999999999999864

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.51  E-value=0.022  Score=49.61  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=31.4

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+||..|+|.++++++||.|+.||+|+.++..
T Consensus        85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam  118 (153)
T PRK05641         85 NVVTAPMPGKILRILVREGQQVKVGQGLLILEAM  118 (153)
T ss_pred             CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence            5689999999999999999999999999998754

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=95.24  E-value=0.025  Score=52.98  Aligned_cols=35  Identities=40%  Similarity=0.602  Sum_probs=32.5

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ...|.++.+|+|.++++++||.|..||+|++|.+.
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~   76 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT   76 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence            46799999999999999999999999999999864

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=95.21  E-value=0.03  Score=56.40  Aligned_cols=40  Identities=25%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             CCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEec
Q 023091          224 SPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLF  264 (287)
Q Consensus       224 ~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv  264 (287)
                      .+.|++||+|++||.|+.-+.. ....+.||++|+|++|..
T Consensus        42 k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        42 KMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             ceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            4689999999999999986543 568899999999999954

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=95.21  E-value=0.022  Score=50.42  Aligned_cols=56  Identities=21%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec----CCCeEEEEecCC
Q 023091          228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG----FGDPLIAVLPSF  283 (287)
Q Consensus       228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve----~GqpL~~I~p~~  283 (287)
                      ++|..|.+|+-+|-+|.-|...+|.+|++|+|++|+   .++-..|+    -+-+|++++.+.
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~  151 (172)
T KOG3373|consen   89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSS  151 (172)
T ss_pred             CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCC
Confidence            789999999999999999999999999999999997   44555555    355899888653

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.10  E-value=0.038  Score=52.88  Aligned_cols=43  Identities=26%  Similarity=0.309  Sum_probs=37.4

Q ss_pred             EEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       240 ~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      |.|...+....|.++.+|+|.+++|++||.|..|++|+.+...
T Consensus        35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~   77 (423)
T TIGR01843        35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDAT   77 (423)
T ss_pred             eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccc
Confidence            4555666667789999999999999999999999999999764

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=95.08  E-value=0.078  Score=48.99  Aligned_cols=66  Identities=24%  Similarity=0.305  Sum_probs=53.3

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEE--EEEEecC--eeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTI--GYLDQFG--TELPVKSDVAGEVLKLLFDDGDAVGFGDPLI  277 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL--~iIEamK--~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~  277 (287)
                      ..+.||..|.|+.           .++.||.|++||+|  +.+-..-  ...+|+||.+|+|.-+  ...-.|..|+.|+
T Consensus       221 ~~~~a~~~G~~~~-----------~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~--~~~~~v~~G~~l~  287 (292)
T PF04952_consen  221 EWVRAPAGGLFEP-----------EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFI--RESPYVEQGDALA  287 (292)
T ss_dssp             CEEESSSSEEEEE-----------TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESE--CTSSECTTTEEEE
T ss_pred             eeecCCccEEEEE-----------eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEe--CcccccCCCCeEE
Confidence            5799999999985           58999999999999  6554222  3358999999999654  4777899999999


Q ss_pred             EEe
Q 023091          278 AVL  280 (287)
Q Consensus       278 ~I~  280 (287)
                      .|.
T Consensus       288 ~v~  290 (292)
T PF04952_consen  288 KVA  290 (292)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            875

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=94.95  E-value=0.099  Score=44.56  Aligned_cols=65  Identities=25%  Similarity=0.348  Sum_probs=45.8

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEE----cCCCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVI----KEGQTIGYLDQFGTELPVKSDVAGEVL-----------------  260 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~V----k~GqvL~iIEamK~~~eV~Ap~sG~Vv-----------------  260 (287)
                      ..|.||+.|++..-           -++-|.+    --|+-+++.=..   ..|.||++|+|.                 
T Consensus         3 ~~i~aPv~G~vi~l-----------~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~   68 (132)
T PF00358_consen    3 ITIYAPVSGKVIPL-----------EEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGV   68 (132)
T ss_dssp             EEEE-SSSEEEEEG-----------GGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSE
T ss_pred             eEEEeeCCcEEEEh-----------hhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCC
Confidence            47999999999864           2344444    237778876433   478999999888                 


Q ss_pred             ------------------EEecCCCCeecCCCeEEEEe
Q 023091          261 ------------------KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 ------------------eilv~dGd~Ve~GqpL~~I~  280 (287)
                                        +.+++.||.|..||+|+.+.
T Consensus        69 eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D  106 (132)
T PF00358_consen   69 EILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD  106 (132)
T ss_dssp             EEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred             EEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence                              55678999999999999875

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=94.84  E-value=0.039  Score=53.99  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=32.8

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ...|.++++|.|.+++|++||.|..||+|++|.+.
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~   95 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT   95 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence            57899999999999999999999999999999864

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.83  E-value=0.053  Score=53.91  Aligned_cols=42  Identities=12%  Similarity=0.101  Sum_probs=35.2

Q ss_pred             EEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          241 YLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       241 iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|....-...|.+...|+|.+|+|++||.|..||+|+++.+.
T Consensus        52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~   93 (457)
T TIGR01000        52 TIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG   93 (457)
T ss_pred             EEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence            344343446799999999999999999999999999999864

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=94.83  E-value=0.046  Score=52.86  Aligned_cols=44  Identities=30%  Similarity=0.476  Sum_probs=37.6

Q ss_pred             EEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          238 TIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       238 vL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..+.|++.. ...|.++++|+|.++.++.||.|..||+|++|.+.
T Consensus        54 ~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~   97 (385)
T PRK09578         54 LPGRLDAYR-QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA   97 (385)
T ss_pred             EEEEEEEee-EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence            346666654 36899999999999999999999999999999764

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=94.81  E-value=0.099  Score=44.15  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=17.6

Q ss_pred             EEecCCCCeecCCCeEEEEe
Q 023091          261 KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 eilv~dGd~Ve~GqpL~~I~  280 (287)
                      +++++.||.|..||+|+++.
T Consensus        83 ~~~vk~Gd~V~~G~~l~~~D  102 (124)
T cd00210          83 TSHVEEGQRVKQGDKLLEFD  102 (124)
T ss_pred             EEEecCCCEEcCCCEEEEEc
Confidence            55688999999999999986

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=94.80  E-value=0.042  Score=54.15  Aligned_cols=44  Identities=30%  Similarity=0.533  Sum_probs=37.9

Q ss_pred             EEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          238 TIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       238 vL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..+.|++.. ...|.++++|.|.++++++|+.|..||+|++|.+.
T Consensus        78 ~~Gtv~a~~-~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~  121 (415)
T PRK11556         78 GLGTVTAAN-TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR  121 (415)
T ss_pred             EEEEEEeee-EEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence            456777754 37799999999999999999999999999999763

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=94.77  E-value=0.062  Score=49.35  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=34.2

Q ss_pred             EEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       240 ~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      +.|+..+ ...|.++.+|+|.++++++|+.|..||+|+.+..
T Consensus        19 G~v~~~~-~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~   59 (322)
T TIGR01730        19 GSLEAVD-EADLAAEVAGKITKISVREGQKVKKGQVLARLDD   59 (322)
T ss_pred             EEEEEee-EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence            3444433 3579999999999999999999999999999974

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=94.74  E-value=0.05  Score=52.70  Aligned_cols=45  Identities=27%  Similarity=0.433  Sum_probs=38.4

Q ss_pred             CEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          237 QTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       237 qvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      +..+.|++.. ...|.++++|.|.++.++.|+.|..||+|++|.+.
T Consensus        51 ~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~   95 (385)
T PRK09859         51 ELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA   95 (385)
T ss_pred             EEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence            3456676665 46799999999999999999999999999999864

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=94.68  E-value=0.1  Score=43.94  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=17.9

Q ss_pred             EEecCCCCeecCCCeEEEEe
Q 023091          261 KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 eilv~dGd~Ve~GqpL~~I~  280 (287)
                      +.+++.||.|..||+|+++.
T Consensus        83 ~~~v~~Gd~V~~G~~l~~~D  102 (121)
T TIGR00830        83 TSHVEEGQRVKKGDPLLEFD  102 (121)
T ss_pred             EEEecCCCEEcCCCEEEEEc
Confidence            66789999999999999986

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=94.60  E-value=0.053  Score=54.59  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=34.0

Q ss_pred             CCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEec
Q 023091          224 SPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLF  264 (287)
Q Consensus       224 ~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv  264 (287)
                      .+.|++||+|++||.|+.-+.. ....+.||++|+|++|..
T Consensus        43 ~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         43 KMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             ceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            4799999999999999965543 458899999999999953

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=94.60  E-value=0.076  Score=50.17  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ...|.++++|+|.++++++||.|+.||+|++|.+.
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~   77 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA   77 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            46899999999999999999999999999999753

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=94.59  E-value=0.06  Score=51.74  Aligned_cols=43  Identities=28%  Similarity=0.349  Sum_probs=36.3

Q ss_pred             EEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          238 TIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       238 vL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      .-|.|++... ..|.++++|.|.++.+++||.|..||+|+.|.+
T Consensus        52 ~~G~v~~~~~-~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         52 ATGKLDALRK-VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             EEEEEEeeeE-EEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            3455555543 579999999999999999999999999999975

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=94.48  E-value=0.07  Score=52.32  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=32.2

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ...|.++.+|+|.+++|++|+.|..||+|++|.+.
T Consensus        58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~   92 (421)
T TIGR03794        58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP   92 (421)
T ss_pred             eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence            35799999999999999999999999999999864

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=94.45  E-value=0.061  Score=52.45  Aligned_cols=42  Identities=26%  Similarity=0.449  Sum_probs=36.2

Q ss_pred             EEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          240 GYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       240 ~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      +.|++.. ...|.+.++|.|.++.++.||.|..||+|++|.+.
T Consensus        58 G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~   99 (397)
T PRK15030         58 GRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA   99 (397)
T ss_pred             EEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence            4556544 37899999999999999999999999999999864

>PRK07051 hypothetical protein; Validated

Probab=94.41  E-value=0.067  Score=41.10  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             eeeeeecCCCeEEEE-------EecCCCCeecCCCeEEEEecC
Q 023091          247 TELPVKSDVAGEVLK-------LLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       247 ~~~eV~Ap~sG~Vve-------ilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ++.+|+||..|++.+       +++++|+.|..|++|+.++..
T Consensus         2 ~~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~   44 (80)
T PRK07051          2 AQHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVM   44 (80)
T ss_pred             CccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEc
Confidence            356899999999999       999999999999999998864

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=94.39  E-value=0.15  Score=44.79  Aligned_cols=69  Identities=28%  Similarity=0.374  Sum_probs=46.5

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEE---------------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVL---------------------  260 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vv---------------------  260 (287)
                      ..|.||+.|.+..-...   ..+.| ..|   --||-+++.=   ....|.||++|+|.                     
T Consensus         6 ~~i~sP~~G~vv~Ls~V---pD~vF-s~k---~mGdGiAI~P---~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLi   75 (156)
T COG2190           6 EEIYSPLSGEVVPLSDV---PDPVF-SEK---MVGDGVAIKP---SEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILI   75 (156)
T ss_pred             EEEEccCCceEEEchhC---CchHh-hcc---cccCcEEEec---CCCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEE
Confidence            57999999998764211   01111 111   1266666543   33678888888776                     


Q ss_pred             --------------EEecCCCCeecCCCeEEEEe
Q 023091          261 --------------KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 --------------eilv~dGd~Ve~GqpL~~I~  280 (287)
                                    +.++++||.|..||+|+++.
T Consensus        76 HiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD  109 (156)
T COG2190          76 HIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD  109 (156)
T ss_pred             EeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence                          56689999999999999875

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=94.36  E-value=0.053  Score=53.14  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.+.++|.|++++|+|++.|..||+||+|.+.
T Consensus        54 v~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~   87 (352)
T COG1566          54 VPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPR   87 (352)
T ss_pred             EEEcCcCceEEEEEEecCCCEecCCCeEEEECcH
Confidence            4678899999999999999999999999999874

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=94.31  E-value=0.051  Score=54.14  Aligned_cols=40  Identities=30%  Similarity=0.440  Sum_probs=34.5

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL  263 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil  263 (287)
                      ..+.|++||+|+.||.|+..+ ......|.|+++|+|++|.
T Consensus        43 ~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        43 AEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            357999999999999999984 3356899999999999985

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=93.85  E-value=0.14  Score=57.15  Aligned_cols=72  Identities=24%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      +..+|...+.|..+..          .|+.|+.+..++.....+... ...|.||..|+|.+++++.||.|..||+|+.|
T Consensus      1037 g~r~v~fElNGq~reV----------~V~D~s~~~~~~~~~KAd~~~-~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~i 1105 (1143)
T TIGR01235      1037 GEREVFFELNGQPRRI----------KVPDRSHKAEAAVRRKADPGN-PAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVL 1105 (1143)
T ss_pred             CcEEEEEEECCeEEEE----------EecCccccccccccccccccc-CceeecCCCcEEEEEEeCCCCEeCCCCEEEEE
Confidence            3467778888887654          567777776666655443322 25699999999999999999999999999999


Q ss_pred             ecC
Q 023091          280 LPS  282 (287)
Q Consensus       280 ~p~  282 (287)
                      +..
T Consensus      1106 Eam 1108 (1143)
T TIGR01235      1106 EAM 1108 (1143)
T ss_pred             Eec
Confidence            853

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=93.80  E-value=0.083  Score=50.13  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.++++|.|.++++++||.|..||+|+++.+.
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~   81 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP   81 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence            5699999999999999999999999999999863

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=93.75  E-value=0.1  Score=49.19  Aligned_cols=41  Identities=27%  Similarity=0.290  Sum_probs=32.1

Q ss_pred             CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCC
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDD  266 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~d  266 (287)
                      ..|++||+|++||+|++=... --.-..||++|+|.+|...+
T Consensus        43 m~VkeGD~Vk~Gq~LF~dK~~-p~v~ftsPvsG~V~~I~RG~   83 (257)
T PF05896_consen   43 MLVKEGDRVKAGQPLFEDKKN-PGVKFTSPVSGTVKAINRGE   83 (257)
T ss_pred             EEeccCCEEeCCCeeEeeCCC-CCcEEecCCCeEEEEEecCC
Confidence            589999999999999973211 22458999999999997633

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=93.70  E-value=0.11  Score=45.42  Aligned_cols=39  Identities=33%  Similarity=0.627  Sum_probs=29.7

Q ss_pred             CcccCCCEEcCCCEEEEEEecCeee-eeecCCCeEEEEEe
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGTEL-PVKSDVAGEVLKLL  263 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~~~-eV~Ap~sG~Vveil  263 (287)
                      +.+.+||.|++||.|+.|.+.|... -++||++|+|+-+.
T Consensus        94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            4789999999999999999999764 69999999998776

; PDB: 3D4R_D.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=93.63  E-value=0.11  Score=40.63  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=29.5

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG  246 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK  246 (287)
                      +|+||..|.+...          +++.|+.|.+|+.|+.|..+.
T Consensus         1 ~i~AP~~G~V~~~----------~~~~G~~v~~g~~l~~i~~~~   34 (105)
T PF13437_consen    1 TIRAPFDGVVVSI----------NVQPGEVVSAGQPLAEIVDTD   34 (105)
T ss_pred             CEECCCCEEEEEE----------eCCCCCEECCCCEEEEEEccc
Confidence            3899999999875          579999999999999998654

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=93.36  E-value=0.1  Score=55.34  Aligned_cols=40  Identities=28%  Similarity=0.370  Sum_probs=33.6

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL  263 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil  263 (287)
                      ..+.|++||+|.+||.|+.-+. -+...|.||++|+|+.|.
T Consensus        49 ~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         49 GELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence            3579999999999999996532 245899999999999985

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=93.34  E-value=0.14  Score=46.12  Aligned_cols=34  Identities=24%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+||++|+|..+.+..|+.|..|++|+.|.+.
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~  122 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADL  122 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence            3689999999999999999999999999998754

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=93.31  E-value=0.068  Score=54.78  Aligned_cols=39  Identities=26%  Similarity=0.344  Sum_probs=35.4

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL  263 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil  263 (287)
                      ..++|++||.|.+||.|..=+.  .+.++.||++|+|.+|.
T Consensus        45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            4578999999999999998665  88999999999999998

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=92.40  E-value=0.25  Score=48.66  Aligned_cols=44  Identities=23%  Similarity=0.208  Sum_probs=36.5

Q ss_pred             EEEEEEecC-eeeeeecCCCeEEEEEe-cCCCCeecCCCeEEEEec
Q 023091          238 TIGYLDQFG-TELPVKSDVAGEVLKLL-FDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       238 vL~iIEamK-~~~eV~Ap~sG~Vveil-v~dGd~Ve~GqpL~~I~p  281 (287)
                      ..+.|+... -...|.+.++|.|.+++ +..||.|..||+|++|..
T Consensus       112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~s  157 (409)
T PRK09783        112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI  157 (409)
T ss_pred             EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence            456666443 23579999999999998 999999999999999974

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=91.84  E-value=0.16  Score=46.31  Aligned_cols=33  Identities=33%  Similarity=0.432  Sum_probs=22.5

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ  244 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa  244 (287)
                      ..|.++..|.+...          +|++||.|++||+|+.|+.
T Consensus         2 ~~Vq~~~~G~V~~i----------~V~eG~~VkkGq~L~~LD~   34 (305)
T PF00529_consen    2 KIVQSLVGGIVTEI----------LVKEGQRVKKGQVLARLDP   34 (305)
T ss_dssp             EEE--SS-EEEEEE-----------S-TTEEE-TTSECEEE--
T ss_pred             EEEeCCCCeEEEEE----------EccCcCEEeCCCEEEEEEe
Confidence            36889999999875          8999999999999999984

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=91.75  E-value=0.39  Score=43.55  Aligned_cols=44  Identities=30%  Similarity=0.433  Sum_probs=36.0

Q ss_pred             CEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          237 QTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       237 qvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ...+.+++ .....|.+...|.|.++++++||.|..||+|+.+.+
T Consensus        56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            34455555 333478888999999999999999999999999986

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=91.59  E-value=0.25  Score=48.41  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=30.8

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+||++|+|..+.+..|+.|..|++|+.|.+.
T Consensus       254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~  287 (421)
T TIGR03794       254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEVE  287 (421)
T ss_pred             CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEcc
Confidence            5699999999999999999999999999999653

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=91.32  E-value=0.27  Score=51.33  Aligned_cols=34  Identities=15%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .+|.||..|+|.+++++.||.|+.||+|+.|+..
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEam  559 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAM  559 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEec
Confidence            4699999999999999999999999999999853

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=91.20  E-value=0.64  Score=49.11  Aligned_cols=67  Identities=22%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE----------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL----------------  260 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv----------------  260 (287)
                      ...|.||+.|++..-           -++-|.|=.    |+-+++.=..   ..|.||++|+|.                
T Consensus       498 ~~~v~aP~~G~vi~l-----------~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G  563 (648)
T PRK10255        498 IAELVSPITGDVVAL-----------DQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKG  563 (648)
T ss_pred             ceEEEecCCcEEEEc-----------ccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCC
Confidence            356999999999863           334443332    6666665433   578999999887                


Q ss_pred             -------------------EEecCCCCeecCCCeEEEEec
Q 023091          261 -------------------KLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       261 -------------------eilv~dGd~Ve~GqpL~~I~p  281 (287)
                                         +.+|++||.|..||+|+++..
T Consensus       564 ~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~  603 (648)
T PRK10255        564 AEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDL  603 (648)
T ss_pred             CEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcH
Confidence                               455889999999999999863

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=91.18  E-value=0.45  Score=49.99  Aligned_cols=64  Identities=31%  Similarity=0.334  Sum_probs=49.9

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE------------------
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL------------------  260 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv------------------  260 (287)
                      .|.||+.|++..           .-++-|.|=.    ||-+++.=.   ...|.||++|+|.                  
T Consensus       480 ~i~aP~~G~v~~-----------L~~v~D~vFs~~~mG~G~AI~P~---~~~v~AP~~G~v~~vf~T~HAigi~t~~G~e  545 (627)
T PRK09824        480 GICSPMTGEVVP-----------LEQVADTTFASGLLGKGIAILPS---VGEVRSPVAGRVASLFATLHAIGLESDDGVE  545 (627)
T ss_pred             hcccccceEEee-----------HHHCCCccccccccCCceEecCC---CCeEEccCCeEEEEEcCCCcEEEEEeCCCcE
Confidence            589999999885           4566666655    676776433   3589999999887                  


Q ss_pred             -----------------EEecCCCCeecCCCeEEEEe
Q 023091          261 -----------------KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 -----------------eilv~dGd~Ve~GqpL~~I~  280 (287)
                                       +.++++||.|..||+|+++.
T Consensus       546 iLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D  582 (627)
T PRK09824        546 VLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD  582 (627)
T ss_pred             EEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence                             56688999999999999986

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=90.94  E-value=0.62  Score=48.67  Aligned_cols=65  Identities=28%  Similarity=0.341  Sum_probs=49.2

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE------------------
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL------------------  260 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv------------------  260 (287)
                      .|.||..|++..-           -++-|.|=.    ||-+++.=   ....|.||++|+|.                  
T Consensus       464 ~i~aP~~G~~~~l-----------~~v~D~vFs~~~~G~G~ai~P---~~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~e  529 (610)
T TIGR01995       464 SLYAPVAGEMLPL-----------NEVPDEVFSSGAMGKGIAILP---TEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIE  529 (610)
T ss_pred             eeccccceEEeeH-----------hhCCCccccccCcCCceEeeC---CCCEEECCCCeEEEEEcCCCCEEEEEECCCcE
Confidence            5899999998853           455555544    66666643   23678999999877                  


Q ss_pred             -----------------EEecCCCCeecCCCeEEEEec
Q 023091          261 -----------------KLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       261 -----------------eilv~dGd~Ve~GqpL~~I~p  281 (287)
                                       +.++++||.|..||+|+++..
T Consensus       530 iliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~  567 (610)
T TIGR01995       530 ILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDL  567 (610)
T ss_pred             EEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecH
Confidence                             566889999999999999863

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=90.86  E-value=0.6  Score=41.58  Aligned_cols=49  Identities=22%  Similarity=0.340  Sum_probs=39.7

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA  278 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~  278 (287)
                      ++++|+.+++||.++.++-. ....+.-|.+   .++.++.|+.|..||.|+-
T Consensus       135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli~  183 (189)
T TIGR00164       135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVLA  183 (189)
T ss_pred             ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEEE
Confidence            57899999999999999854 4455666765   3788999999999996653

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=90.36  E-value=0.39  Score=50.07  Aligned_cols=35  Identities=29%  Similarity=0.542  Sum_probs=32.0

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      -..|.||..|+|.++++++||.|+.||+|+.|+..
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEam  558 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAM  558 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            34799999999999999999999999999998753

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=90.14  E-value=0.4  Score=49.88  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=31.8

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.||..|+|.++++++||.|+.||+|+.|+..
T Consensus       518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEam  551 (582)
T TIGR01108       518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAM  551 (582)
T ss_pred             CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEec
Confidence            5799999999999999999999999999999853

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=90.08  E-value=0.72  Score=41.62  Aligned_cols=48  Identities=23%  Similarity=0.367  Sum_probs=39.0

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI  277 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~  277 (287)
                      ++++|+.+++||.++.++-. ....+.-|.+   .++.++.||.|..||.++
T Consensus       155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi  202 (206)
T PRK05305        155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL  202 (206)
T ss_pred             eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence            67899999999999999855 4456666665   378999999999999543

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=89.38  E-value=0.49  Score=45.05  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             eecCCCeEEEE-------EecCCCCeecCCCeEEEEecC
Q 023091          251 VKSDVAGEVLK-------LLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       251 V~Ap~sG~Vve-------ilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      |.||..|++.+       ++++.||.|+.||+|+.|+..
T Consensus       200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAM  238 (274)
T PLN02983        200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAM  238 (274)
T ss_pred             EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEee
Confidence            78999999999       599999999999999999854

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=89.37  E-value=0.51  Score=49.19  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=31.7

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.||..|+|.++++++|+.|+.||+|+.|+..
T Consensus       523 ~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieam  556 (592)
T PRK09282        523 GAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM  556 (592)
T ss_pred             ceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            5799999999999999999999999999998753

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=88.83  E-value=0.59  Score=46.43  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             CcccCCCEEcCCCEEEEEEecCe--eeeeecCCCeEEEEEecCCCC
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGT--ELPVKSDVAGEVLKLLFDDGD  268 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~--~~eV~Ap~sG~Vveilv~dGd  268 (287)
                      ..|++||.|++||+|+.   +|-  -.-++||++|+|++|...+-.
T Consensus        43 mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~KR   85 (447)
T COG1726          43 MKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEKR   85 (447)
T ss_pred             ceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccce
Confidence            57999999999999986   343  245899999999999865543

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=88.75  E-value=0.65  Score=40.39  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=29.8

Q ss_pred             eeeecCCCeEEEE-------EecCCCCeecCCCeEEEEec
Q 023091          249 LPVKSDVAGEVLK-------LLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       249 ~eV~Ap~sG~Vve-------ilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|+||..|++.+       ++++.||.|+.||.|+.|+.
T Consensus        81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEa  120 (156)
T TIGR00531        81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEA  120 (156)
T ss_pred             CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEe
Confidence            4589999999987       58999999999999999875

The gene name is accB or fabE.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=88.71  E-value=0.7  Score=42.91  Aligned_cols=36  Identities=22%  Similarity=0.437  Sum_probs=31.8

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG  246 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK  246 (287)
                      ...|+||..|++...          .+++||.|..||+|+.|+...
T Consensus        45 ~~~~~a~~~g~~~~~----------~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         45 TNEVEAPAAGTLRRQ----------VAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             eEEEecCCCeEEEEE----------EcCCCCEeCCCCEEEEEecCC
Confidence            367999999999875          799999999999999998654

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=87.78  E-value=0.75  Score=35.45  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             eCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091          205 FSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG  246 (287)
Q Consensus       205 ~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK  246 (287)
                      --|.+|...            +++.||.|++||+||.|-+..
T Consensus        28 ID~~vGi~l------------~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   28 IDPAVGIEL------------HKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             --TT-EEEE------------SS-TTSEEBTTSEEEEEEESS
T ss_pred             cCcCcCeEe------------cCcCcCEECCCCeEEEEEcCC
Confidence            446788765            589999999999999987654

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=87.71  E-value=1.1  Score=30.94  Aligned_cols=31  Identities=32%  Similarity=0.481  Sum_probs=27.6

Q ss_pred             ecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          252 KSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       252 ~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .++.+|.|.++.+.+|+.|.+|++|+.++..
T Consensus        10 ~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~   40 (74)
T cd06849          10 ESMTEGTIVEWLVKEGDSVEEGDVLAEVETD   40 (74)
T ss_pred             CCCcEEEEEEEEECCCCEEcCCCEEEEEEeC
Confidence            3678999999999999999999999998653

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=87.56  E-value=0.68  Score=48.31  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=30.2

Q ss_pred             eeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      .+.||..|+|+.++|++|+.|..||+|+.++.
T Consensus       577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA  608 (645)
T COG4770         577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA  608 (645)
T ss_pred             ceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence            49999999999999999999999999999874

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=86.93  E-value=0.93  Score=39.33  Aligned_cols=33  Identities=12%  Similarity=0.194  Sum_probs=29.8

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD  243 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE  243 (287)
                      ...|+||..|++...          +++.||.|..||.|+.|+
T Consensus       123 ~~eI~a~~~G~i~~i----------~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        123 MNEIEADKSGVVTEI----------LVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             ceEEecCCCeEEEEE----------EcCCCCEeCCCCEEEEeC
Confidence            458999999999886          899999999999999885

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria

Probab=86.67  E-value=1.2  Score=39.67  Aligned_cols=63  Identities=27%  Similarity=0.408  Sum_probs=46.8

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcc--cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPIC--KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI  277 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V--~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~  277 (287)
                      ..|.+-++|++...           +  ++|+.|++||.++.++= .-...+--|.+ .+.++.++.|+.|.+||.|.
T Consensus       137 v~Vga~~v~~I~~~-----------~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~-~~~~~~v~~g~~V~~Ge~i~  201 (202)
T PF02666_consen  137 VQVGALLVGSIVLT-----------VDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD-KIFEWSVKPGQKVRAGETIG  201 (202)
T ss_pred             EEeccceeceeEEE-----------ecccCCCEEecCcEeCEEec-CCeEEEEEeCC-CccccccCCCCEEEeeeEEe
Confidence            46667778877653           4  78999999999999985 43344433433 33389999999999999886

The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=86.57  E-value=0.82  Score=44.92  Aligned_cols=34  Identities=32%  Similarity=0.499  Sum_probs=31.3

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+||++|.|.+..+..|+.|..|++||.+-+.
T Consensus       209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~  242 (352)
T COG1566         209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPL  242 (352)
T ss_pred             CEEECCCCceEEeecccCCCeecCCCceEEEecc
Confidence            5799999999999999999999999999988764

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=86.41  E-value=1.1  Score=44.72  Aligned_cols=35  Identities=17%  Similarity=0.114  Sum_probs=30.0

Q ss_pred             eeeeecCCCeEEEEEecCCC-CeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDG-DAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dG-d~Ve~GqpL~~I~p~  282 (287)
                      ...|+||++|+|....+..| +.|..|++|+.|-|.
T Consensus       316 ~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~IvP~  351 (457)
T TIGR01000       316 KGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQIYPI  351 (457)
T ss_pred             CCEEECCCCeEEEecccCCCCcEeCCCCEEEEEecC
Confidence            46799999999997778888 589999999998765

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK12784 hypothetical protein; Provisional

Probab=86.21  E-value=0.92  Score=35.90  Aligned_cols=40  Identities=15%  Similarity=0.137  Sum_probs=34.7

Q ss_pred             cCee-eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCCC
Q 023091          245 FGTE-LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFH  284 (287)
Q Consensus       245 mK~~-~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~~  284 (287)
                      ||.+ -+|.||+-|+|.++++++++.|--=++||.|+..+.
T Consensus         1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg   41 (84)
T PRK12784          1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG   41 (84)
T ss_pred             CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence            5544 469999999999999999999999999999987654

>TIGR02712 urea_carbox urea carboxylase

Probab=85.81  E-value=1.1  Score=50.45  Aligned_cols=35  Identities=34%  Similarity=0.483  Sum_probs=31.9

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      ..|.||..|+|.+++++.||.|+.||+|+.|+..+
T Consensus      1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712      1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred             cEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence            45999999999999999999999999999987643

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=85.03  E-value=1.8  Score=31.81  Aligned_cols=28  Identities=36%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .+|++.+++++.|+.|+.|++|+.++..
T Consensus        12 ~~g~~~~~~v~~G~~v~~g~~l~~ie~~   39 (73)
T cd06663          12 GDGTVVKWLKKVGDKVKKGDVLAEIEAM   39 (73)
T ss_pred             cCEEEEEEEcCCcCEECCCCEEEEEEeC
Confidence            4789999999999999999999998753

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=84.72  E-value=1.2  Score=45.33  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=31.4

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF  245 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam  245 (287)
                      ...|.||..|++...          ++++||.|..||+||+|+..
T Consensus       134 ~~eI~Ap~~G~v~~i----------lv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        134 TIDIASPASGVIQEF----------LVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             eeEEecCCCeEEEEE----------EeCCCCEecCCCEEEEeccC
Confidence            468999999999875          89999999999999999753

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=84.38  E-value=2.3  Score=37.71  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=20.4

Q ss_pred             CCCCCcccCCCEEcCCCEEEEEEe
Q 023091          221 KKQSPICKEGDVIKEGQTIGYLDQ  244 (287)
Q Consensus       221 p~~~p~V~vGd~Vk~GqvL~iIEa  244 (287)
                      ..-..+|++||+|++||.|+.+.-
T Consensus       102 ~gF~~~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439        102 EGFKRIAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             CceEEEecCCCEEeCCCEEEEEcH
Confidence            445678999999999999999873

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=84.11  E-value=1.7  Score=45.42  Aligned_cols=59  Identities=25%  Similarity=0.319  Sum_probs=37.2

Q ss_pred             CCCCCcccCCCEEcCCCEEEEEEecCee-------eeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          221 KKQSPICKEGDVIKEGQTIGYLDQFGTE-------LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~-------~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      +.-..+|++||+|++||.|+.++-..+.       .+|--.-......+....+..|..|++++.+
T Consensus       544 ~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~  609 (610)
T TIGR01995       544 EGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL  609 (610)
T ss_pred             CCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence            4456789999999999999998843322       2222111122223344555678889988865

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=83.94  E-value=1.2  Score=44.69  Aligned_cols=63  Identities=19%  Similarity=0.157  Sum_probs=43.8

Q ss_pred             EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---eeeeecC------CCeEEEEEecCCCCeecCCC
Q 023091          204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---ELPVKSD------VAGEVLKLLFDDGDAVGFGD  274 (287)
Q Consensus       204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---~~eV~Ap------~sG~Vveilv~dGd~Ve~Gq  274 (287)
                      +.+-.-|.|+|..                +++-|.-|.+..-|-   +.+|+-|      ..|+|++|++++||.|+.||
T Consensus        13 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd   76 (418)
T PTZ00144         13 LLSSVKGMFRRFS----------------LRKLQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDE   76 (418)
T ss_pred             ccccchhHHHHHh----------------hhccchhhhhhcccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCC
Confidence            3455667776642                345555565554442   2344444      57899999999999999999


Q ss_pred             eEEEEecC
Q 023091          275 PLIAVLPS  282 (287)
Q Consensus       275 pL~~I~p~  282 (287)
                      +|+.|+..
T Consensus        77 ~L~~vEtd   84 (418)
T PTZ00144         77 VICIIETD   84 (418)
T ss_pred             EEEEEEEc
Confidence            99999864

>PRK12999 pyruvate carboxylase; Reviewed

Probab=83.88  E-value=1.4  Score=49.37  Aligned_cols=33  Identities=33%  Similarity=0.550  Sum_probs=31.2

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|.||..|+|++++++.||.|..||+|+.++.
T Consensus      1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999       1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred             ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc
Confidence            569999999999999999999999999999885

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=82.31  E-value=2.5  Score=44.60  Aligned_cols=59  Identities=20%  Similarity=0.275  Sum_probs=36.1

Q ss_pred             CCCCCcccCCCEEcCCCEEEEEEecCee-------eeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          221 KKQSPICKEGDVIKEGQTIGYLDQFGTE-------LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~-------~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      ..-..+|++||+|++||.|+..+-..+.       .+|--.-......+....+..|..|++|+.+
T Consensus       560 ~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~  625 (627)
T PRK09824        560 KFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSI  625 (627)
T ss_pred             CCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEe
Confidence            4457789999999999999998733321       1111111111122333445568899988876

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=80.72  E-value=3.1  Score=36.67  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=19.8

Q ss_pred             CCCCcccCCCEEcCCCEEEEEEec
Q 023091          222 KQSPICKEGDVIKEGQTIGYLDQF  245 (287)
Q Consensus       222 ~~~p~V~vGd~Vk~GqvL~iIEam  245 (287)
                      .-..+|++||+|++||.|+...-.
T Consensus        88 gF~~~v~~Gd~Vk~Gd~Li~fDl~  111 (156)
T COG2190          88 GFESLVKEGDKVKAGDPLLEFDLD  111 (156)
T ss_pred             ceEEEeeCCCEEccCCEEEEECHH
Confidence            344589999999999999988743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	2e-07
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	5e-06
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	6e-05
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	9e-05
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	1e-04
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	2e-04
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	2e-04
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	5e-04

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Length = 80

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL 263
           V SP VG+F R  +   K      + G  +  G T+  ++       +++D +G V  +L
Sbjct: 7   VRSPMVGTFYRTPSPDAK---AFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAIL 63

Query: 264 FDDGDAVGFGDPLIAV 279
            + G  V F +PL+ +
Sbjct: 64  VESGQPVEFDEPLVVI 79

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 227  CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL 280
               GD ++ G  +  ++   TE+ V +  +G+V K+L  +GD V  GD +  ++
Sbjct: 1183 AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV 1236

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282
           K GD I++GQ +  L+    E+P+ +D +G V ++   +GD V  GD L+ +  S
Sbjct: 16  KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
             G  + +GQ +  L     E  V S + G V K+       +   D ++ +
Sbjct: 666 VAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
           + GD ++ GQ +  L+    E  + S   G V ++L  +G+AV  G PLI +
Sbjct: 22  RVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
           KEGD +K GQT+  L+    E  + +   G+V K+L  + DAV  G  LI +
Sbjct: 25  KEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 228 KEGDVIKEGQTIGYL--DQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
           KEGD++++ Q +  +  D+   ++P  S V G+++K+L+ +G  V  G  L+ +
Sbjct: 24  KEGDMVEKDQDLVEVMTDKVTVKIP--SPVRGKIVKILYREGQVVPVGSTLLQI 75

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 228 KEGDVIKEGQTIGYL--DQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
           KEGD + +  +I  +  D+    +   S   G + KL ++  D    G PL+ +
Sbjct: 27  KEGDTVSQFDSICEVQSDKASVTIT--SRYDGVIKKLYYNLDDIAYVGKPLVDI 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.68
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.57
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.55
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.54
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.52
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.51
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.5
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.49
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.49
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.48
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.47
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.46
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.46
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.45
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.44
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.43
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.41
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.41
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.41
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.38
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.38
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.38
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	99.36
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.33
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.32
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	99.14
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	99.13
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.12
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.08
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	99.01
1hpc_A	131	H protein of the glycine cleavage system; transit	99.01
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	99.0
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.99
3klr_A	125	Glycine cleavage system H protein; antiparallel be	98.6
3mxu_A	143	Glycine cleavage system H protein; seattle structu	98.46
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	98.36
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.27
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.18
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.17
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	98.15
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	98.12
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.97
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	97.85
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	97.67
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	97.66
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	97.62
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.49
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	97.35
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	97.31
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	97.04
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	97.0
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.87
2qj8_A	332	MLR6093 protein; structural genomics, joint center	96.87
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	96.75
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	96.6
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	96.55
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	96.25
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	96.03
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	95.92
2xha_A	193	NUSG, transcription antitermination protein NUSG;	95.82
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	95.78
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	95.74
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	95.65
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	95.29
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	95.01
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	95.0
3our_B	183	EIIA, phosphotransferase system IIA component; exh	94.95
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	94.88
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	94.87
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	94.84
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	94.79
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	94.45
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	94.4
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	94.4
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	94.39
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	94.39
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	94.26
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	94.22
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	94.15
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	93.72
2xha_A	193	NUSG, transcription antitermination protein NUSG;	93.07
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	93.01
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	92.37
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	92.14
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	91.88
2bco_A	350	Succinylglutamate desuccinylase; NESG, VPR14, stru	90.71
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	89.34
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	89.0
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	88.68
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	87.85
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	87.37
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	86.23
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	85.58
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	84.74
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	84.36

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.68  E-value=3.3e-16  Score=117.88  Aligned_cols=76  Identities=25%  Similarity=0.489  Sum_probs=71.9

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|+||+.|+|++.+.   +...|++++||.|++||.|+.||+||+..+|+||++|+|.++++++|+.|..|++||.|+
T Consensus         5 ~~v~a~~~G~v~~~~~---~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPS---PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSSEEEESSSS---TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             eEEEcCCCeEEEEecc---cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            4799999999999754   688999999999999999999999999999999999999999999999999999999984

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.57  E-value=5.8e-15  Score=113.12  Aligned_cols=72  Identities=13%  Similarity=0.215  Sum_probs=67.6

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|+||+.|+++++          +|++||.|++||+||.||+||+..+|+||++|+|.+++ +.|+.|..|++|++|.+
T Consensus         6 ~~v~a~~~G~v~~~----------~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~   74 (84)
T 2kcc_A            6 TVLRSPSAGKLTQY----------TVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL   74 (84)
T ss_dssp             TEECCSSSCCEEEE----------SSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred             ceEECCCCEEEEEE----------ECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence            36999999999986          89999999999999999999999999999999999999 99999999999999986


Q ss_pred             CCC
Q 023091          282 SFH  284 (287)
Q Consensus       282 ~~~  284 (287)
                      ..+
T Consensus        75 ~~~   77 (84)
T 2kcc_A           75 DDL   77 (84)
T ss_dssp             SCS
T ss_pred             CCh
Confidence            543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.55  E-value=2e-14  Score=110.48  Aligned_cols=68  Identities=24%  Similarity=0.395  Sum_probs=62.5

Q ss_pred             cceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCCeEEEEecCCCC
Q 023091          208 TVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGDPLIAVLPSFHD  285 (287)
Q Consensus       208 ~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~GqpL~~I~p~~~~  285 (287)
                      ..|++.+|          +|++||.|++||+||.||+||+.++|+||++|+|.++++++|+ .|..|++|++|.....+
T Consensus        18 ~~G~v~~~----------~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~~~   86 (87)
T 3crk_C           18 TMGTVQRW----------EKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEAD   86 (87)
T ss_dssp             CEEEEEEE----------CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSSTT
T ss_pred             CcEEEEEE----------EcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcccCC
Confidence            46677765          8999999999999999999999999999999999999999999 89999999999976554

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.54  E-value=3.3e-14  Score=104.12  Aligned_cols=69  Identities=30%  Similarity=0.460  Sum_probs=65.8

Q ss_pred             EeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          204 VFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       204 V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      |+||+.|++.++          ++++||.|++||.|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|.+.
T Consensus         2 v~a~~~G~v~~~----------~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   70 (72)
T 1z6h_A            2 VSIQMAGNLWKV----------HVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS   70 (72)
T ss_dssp             EECCSSEEEEEE----------CCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred             EECcccEEEEEE----------EcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence            789999999885          899999999999999999999999999999999999999999999999999999754

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=6.5e-14  Score=110.33  Aligned_cols=71  Identities=13%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|.||+.|++.++          ++++||.|++||+|+.||+||+..+|+||++|+|. +++++|+.|..|++|++|.+
T Consensus        18 ~~v~a~~~G~v~~~----------~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           18 TVLRSPSAGKLTQY----------TVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             TEEECSSCEEEEEE----------SSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             cEEeCCCCEEEEEE----------EcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            47999999999986          89999999999999999999999999999999999 99999999999999999986


Q ss_pred             CC
Q 023091          282 SF  283 (287)
Q Consensus       282 ~~  283 (287)
                      ..
T Consensus        87 ~~   88 (100)
T 2dn8_A           87 DD   88 (100)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=8.7e-14  Score=110.04  Aligned_cols=81  Identities=14%  Similarity=0.279  Sum_probs=66.1

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCee-cCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAV-GFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~V-e~GqpL~~I~  280 (287)
                      ..|+.|..|.....    +....|+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.| ..|++|++|.
T Consensus         8 ~~i~~P~lg~~~~~----G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~   83 (98)
T 2dnc_A            8 IKILMPSLSPTMEE----GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV   83 (98)
T ss_dssp             EEEECCCCSTTCSE----ECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred             EEEECCCCCCCCcc----EEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence            45677764421111    122335999999999999999999999999999999999999999999998 9999999999


Q ss_pred             cCCCCC
Q 023091          281 PSFHDI  286 (287)
Q Consensus       281 p~~~~~  286 (287)
                      ....++
T Consensus        84 ~~~~~~   89 (98)
T 2dnc_A           84 EEGEDW   89 (98)
T ss_dssp             CTTSCS
T ss_pred             cCCCcc
Confidence            765544

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.50  E-value=1.5e-13  Score=100.77  Aligned_cols=69  Identities=30%  Similarity=0.467  Sum_probs=65.6

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|+||+.|++.++          ++++||.|++||.|+.|+++++..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus         6 ~~v~a~~~G~v~~~----------~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A            6 NVVSAPMPGKVLRV----------LVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             CEEECSSCEEEEEE----------CCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             eEEecCCCEEEEEE----------EcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            46999999999875          7999999999999999999999999999999999999999999999999999874

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.49  E-value=1e-13  Score=104.16  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=60.8

Q ss_pred             CcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          207 PTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       207 P~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ++.|++.+          |+|++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+.
T Consensus        13 ~~~G~i~~----------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (79)
T 1ghj_A           13 IADGTVAT----------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             CSCEEECC----------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             CCCEEEEE----------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence            45677665          5899999999999999999999999999999999999999999999999999999763

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.49  E-value=1.7e-13  Score=101.66  Aligned_cols=70  Identities=31%  Similarity=0.434  Sum_probs=66.3

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|+||+.|.+.++          ++++||.|++||+|+.|+.+|+..+|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus         8 ~~~v~a~~~G~v~~~----------~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKI----------LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SSEEEBSSSCEEEEE----------CCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CeEEECCCCEEEEEE----------EcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            357999999999875          7999999999999999999999999999999999999999999999999999884

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.48  E-value=1.2e-13  Score=107.94  Aligned_cols=66  Identities=20%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             cceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          208 TVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       208 ~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      ..|++.+|          +|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|++|.+..
T Consensus        17 ~~G~v~~~----------~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~   82 (93)
T 1k8m_A           17 REVTVKEW----------YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (93)
T ss_dssp             CCEEEEEE----------CCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             CCEEEEEE----------EcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            46677765          8999999999999999999999999999999999999999999999999999998653

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.47  E-value=1.4e-13  Score=148.71  Aligned_cols=71  Identities=27%  Similarity=0.495  Sum_probs=67.9

Q ss_pred             CCceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEE
Q 023091          199 NGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIA  278 (287)
Q Consensus       199 ~~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~  278 (287)
                      .+...|+|||.|+|+++          +|++||.|++||+||+||+|||+++|+||++|+|.+|++++|+.|++||+|++
T Consensus      1165 ~~~~~v~ap~~G~v~~~----------~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~ 1234 (1236)
T 3va7_A         1165 DDAELLYSEYTGRFWKP----------VAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAV 1234 (1236)
T ss_dssp             TTCEEEECSSCEEEEEE----------SSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEE
T ss_pred             CCCcEEeCCCcEEEEEE----------EcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEE
Confidence            45578999999999985          89999999999999999999999999999999999999999999999999998


Q ss_pred             E
Q 023091          279 V  279 (287)
Q Consensus       279 I  279 (287)
                      |
T Consensus      1235 i 1235 (1236)
T 3va7_A         1235 I 1235 (1236)
T ss_dssp             E
T ss_pred             e
Confidence            7

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.46  E-value=1.4e-13  Score=140.64  Aligned_cols=70  Identities=17%  Similarity=0.313  Sum_probs=66.9

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ...|+|||.|+++++          +|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|+.|++|++|+
T Consensus       612 ~~~v~ap~~G~v~~~----------~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKV----------DVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CSEEECCSCEEEEEE----------CCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCeEECCCcEEEEEE----------EeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            357999999999986          8999999999999999999999999999999999999999999999999999984

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.46  E-value=2.5e-13  Score=113.01  Aligned_cols=72  Identities=22%  Similarity=0.390  Sum_probs=64.4

Q ss_pred             eEEeCCcc------eEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCC
Q 023091          202 VLVFSPTV------GSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGD  274 (287)
Q Consensus       202 ~~V~AP~v------Gtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~Gq  274 (287)
                      ..|+.|..      |++.+          |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|+
T Consensus        28 ~~i~~P~lG~~~~~G~V~~----------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~   97 (128)
T 1y8o_B           28 MQVLLPALSPTMTMGTVQR----------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGT   97 (128)
T ss_dssp             EEEECCCSSTTCSEEEEEE----------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTC
T ss_pred             eeEEcCCCCCCcccEEEEE----------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCC
Confidence            45777765      55655          59999999999999999999999999999999999999999998 899999


Q ss_pred             eEEEEecCC
Q 023091          275 PLIAVLPSF  283 (287)
Q Consensus       275 pL~~I~p~~  283 (287)
                      +|++|....
T Consensus        98 ~L~~i~~~~  106 (128)
T 1y8o_B           98 PLCIIVEKE  106 (128)
T ss_dssp             EEEEEESSG
T ss_pred             EEEEEecCc
Confidence            999998653

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.45  E-value=1.8e-13  Score=102.10  Aligned_cols=65  Identities=26%  Similarity=0.416  Sum_probs=61.3

Q ss_pred             CCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          206 SPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       206 AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      +++.|++.++          ++++||.|++||.||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.
T Consensus        12 ~~~~G~v~~~----------~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A           12 GVTEGEIVRW----------DVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             SCCCEEEEEC----------SCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             CCccEEEEEE----------EeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            4678888875          8999999999999999999999999999999999999999999999999999986

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.44  E-value=2.6e-13  Score=109.25  Aligned_cols=58  Identities=24%  Similarity=0.241  Sum_probs=55.9

Q ss_pred             CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCCeEEEEecC
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGDPLIAVLPS  282 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~GqpL~~I~p~  282 (287)
                      |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|...
T Consensus        27 ~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~   85 (108)
T 2dne_A           27 WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK   85 (108)
T ss_dssp             CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred             EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence            59999999999999999999999999999999999999999999 89999999999864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.43  E-value=7e-13  Score=99.50  Aligned_cols=61  Identities=28%  Similarity=0.346  Sum_probs=57.8

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      ..|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|.+..
T Consensus        16 ~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~   76 (79)
T 1iyu_A           16 IELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             EEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence            4468999999999999999999999999999999999999999999999999999998754

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.41  E-value=5.8e-13  Score=104.83  Aligned_cols=73  Identities=22%  Similarity=0.349  Sum_probs=68.3

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|++|+.|++.++          ++++||.|++||+|+.||.+|+..+|+||++|+|.+++++.|+.|..|++|++|..
T Consensus        15 ~~v~a~~~G~v~~~----------~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~   84 (99)
T 2ejm_A           15 GGPLAPMTGTIEKV----------FVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE   84 (99)
T ss_dssp             SSCBCSSSEEEEEE----------CCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred             eEEecCCCEEEEEE----------ECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence            35899999999886          89999999999999999999999999999999999999999999999999999987


Q ss_pred             CCC
Q 023091          282 SFH  284 (287)
Q Consensus       282 ~~~  284 (287)
                      ...
T Consensus        85 ~~~   87 (99)
T 2ejm_A           85 EES   87 (99)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            544

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.41  E-value=7.5e-13  Score=99.23  Aligned_cols=59  Identities=22%  Similarity=0.228  Sum_probs=56.6

Q ss_pred             CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      |++++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+..
T Consensus        20 ~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   78 (80)
T 1qjo_A           20 VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence            58999999999999999999999999999999999999999999999999999998753

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.41  E-value=4e-14  Score=108.17  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=64.8

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|++|..|++.+          |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|...
T Consensus         4 ~i~~p~~G~v~~----------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A            4 EVNVPDIVEVTE----------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             CCCCCSCCCCCS----------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred             EEECCCeEEEEE----------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            367888887765          5899999999999999999999999999999999999999999999999999999864

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.38  E-value=7.7e-13  Score=142.11  Aligned_cols=71  Identities=18%  Similarity=0.305  Sum_probs=67.1

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|.|||.|+++++          +|++||.|++||+||+||+|||+++|+||++|+|.++++++|+.|..||+|+.|++
T Consensus      1078 ~~v~ap~~G~v~~~----------~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1078 SHIGAQMPGSVTEV----------KVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp             SEEECSSSEEEEEE----------CCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred             ceeecCceEEEEEE----------EeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            57999999999986          89999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 023091          282 S  282 (287)
Q Consensus       282 ~  282 (287)
                      .
T Consensus      1148 ~ 1148 (1150)
T 3hbl_A         1148 A 1148 (1150)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.38  E-value=1.8e-13  Score=103.04  Aligned_cols=69  Identities=20%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             eCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          205 FSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       205 ~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      .+++.|++.++          ++++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+..
T Consensus        11 g~~~~G~i~~~----------~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~~   79 (81)
T 1gjx_A           11 GGHENVDIIAV----------EVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG   79 (81)
T ss_dssp             SSCSSEEEEEE----------CCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred             CCCCcEEEEEE----------EcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEecC
Confidence            35678888775          8999999999999999999999999999999999999999999999999999998643

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.38  E-value=8e-14  Score=108.95  Aligned_cols=69  Identities=28%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|+||+.|++.++          ++++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus        26 ~~v~a~~~G~v~~~----------~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           26 SVLRSPMPGVVVAV----------SVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             CCCCCSSSCEEEEE----------CCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             eEEECCCCEEEEEE----------ECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            35899999999986          7999999999999999999999999999999999999999999999999999874

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=99.36  E-value=1.9e-13  Score=114.93  Aligned_cols=56  Identities=16%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEE---ecCCCCeec---CCC-eEEEEecCC
Q 023091          228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKL---LFDDGDAVG---FGD-PLIAVLPSF  283 (287)
Q Consensus       228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vvei---lv~dGd~Ve---~Gq-pL~~I~p~~  283 (287)
                      ++||.|++||+||+||+||++++|.||++|+|+++   ++++|+.|+   ||+ +||+|++.+
T Consensus        54 ~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~  116 (136)
T 1zko_A           54 EVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD  116 (136)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred             CCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence            99999999999999999999999999999999999   899999999   999 999999765

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.32  E-value=1e-13  Score=104.69  Aligned_cols=59  Identities=19%  Similarity=0.138  Sum_probs=56.1

Q ss_pred             CCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          223 QSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       223 ~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|+|++||.|++||+||.||+||+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus        20 ~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           20 ATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             EEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            34699999999999999999999999999999999999999999999999999999875

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=99.14  E-value=3e-11  Score=130.04  Aligned_cols=69  Identities=19%  Similarity=0.338  Sum_probs=59.7

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|.|||.|+++++          +|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus      1096 ~~v~ap~~G~v~~~----------~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1096 AHVGAPMPGVISRV----------FVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             TEEECSSCEEEEEE----------CCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             ceeeCCCCeEEEEE----------EcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            46999999999986          8999999999999999999999999999999999999999999999999999875

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=99.13  E-value=1.5e-11  Score=126.75  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=65.6

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|.|||.|+++++          +|++||.|++||+||+||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus       650 ~~v~ap~~G~V~~v----------~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  718 (718)
T 3bg3_A          650 GQIGAPMPGKVIDI----------KVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE  718 (718)
T ss_dssp             SCEECSSCEEEEEE----------CSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred             ceEeCCCCeEEEEE----------EeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence            35999999999986          8999999999999999999999999999999999999999999999999999763

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.12  E-value=5.7e-12  Score=122.79  Aligned_cols=77  Identities=22%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|+-|..|.-...    +....|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         4 ~i~mP~lg~~~~e----g~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~   79 (428)
T 3dva_I            4 EFKLPDIGEGIHE----GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   79 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEcCCCCCCCcc----EEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            4666777743222    356678999999999999999999999999999999999999999999999999999999864


Q ss_pred             C
Q 023091          283 F  283 (287)
Q Consensus       283 ~  283 (287)
                      .
T Consensus        80 ~   80 (428)
T 3dva_I           80 G   80 (428)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=99.01  E-value=6.7e-10  Score=88.48  Aligned_cols=72  Identities=25%  Similarity=0.326  Sum_probs=64.5

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCee-----------------------------eeee
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTE-----------------------------LPVK  252 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~-----------------------------~eV~  252 (287)
                      ..|.||+.|.+.+.          +|++||.|++||+|+.|+..+..                             ..|+
T Consensus         2 ~~v~a~~~G~V~~v----------~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~   71 (116)
T 2k32_A            2 VIIKPQVSGVIVNK----------LFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIK   71 (116)
T ss_dssp             EEECCSSCEEEEEE----------CSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEE
T ss_pred             eEEeCcCCEEEEEE----------ECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEE
Confidence            46899999999875          79999999999999999987544                             3899


Q ss_pred             cCCCeEEEEEecCCCCeecCC-CeEEEEecCC
Q 023091          253 SDVAGEVLKLLFDDGDAVGFG-DPLIAVLPSF  283 (287)
Q Consensus       253 Ap~sG~Vveilv~dGd~Ve~G-qpL~~I~p~~  283 (287)
                      ||++|+|.++.++.|+.|..| ++|+.|.+..
T Consensus        72 AP~~G~V~~~~~~~G~~v~~g~~~l~~i~~~~  103 (116)
T 2k32_A           72 APFDGTIGDALVNIGDYVSASTTELVRVTNLN  103 (116)
T ss_dssp             CSSSEEECCCSCCTTCEECTTTSCCEEEECSC
T ss_pred             cCCCEEEEEEECCCCCEEcCCCcEEEEEECCC
Confidence            999999999999999999999 9999998643

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=99.01  E-value=2.3e-10  Score=95.54  Aligned_cols=70  Identities=17%  Similarity=0.302  Sum_probs=59.7

Q ss_pred             eCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEE
Q 023091          205 FSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLI  277 (287)
Q Consensus       205 ~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~  277 (287)
                      ..|+.|.+...-         +.++||.|++||+||+||+||+.++|.||++|+|++++   .++.+.|+   ||+ +||
T Consensus        31 a~~~lG~i~~v~---------lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (131)
T 1hpc_A           31 AQDHLGEVVFVE---------LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI  101 (131)
T ss_dssp             HHHHHCSEEEEE---------CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             hcccCCCceEEE---------ecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence            357778655441         24999999999999999999999999999999999997   66778886   888 999


Q ss_pred             EEecCC
Q 023091          278 AVLPSF  283 (287)
Q Consensus       278 ~I~p~~  283 (287)
                      +|++.+
T Consensus       102 ~i~~~~  107 (131)
T 1hpc_A          102 KIKPTS  107 (131)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999765

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=99.00  E-value=4.5e-10  Score=93.33  Aligned_cols=71  Identities=13%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             eCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEE
Q 023091          205 FSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLI  277 (287)
Q Consensus       205 ~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~  277 (287)
                      ..|+.|.+...-         +.++||.|++||+||+||+||+.++|.||++|+|++++   .++.+.|+   ||+ +||
T Consensus        32 a~~~lG~i~~v~---------lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~  102 (128)
T 3a7l_A           32 AQELLGDMVFVD---------LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIF  102 (128)
T ss_dssp             HHHHHCSEEEEE---------CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred             HhccCCceEEEE---------ecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEE
Confidence            356777654431         24899999999999999999999999999999999996   58889999   998 999


Q ss_pred             EEecCCC
Q 023091          278 AVLPSFH  284 (287)
Q Consensus       278 ~I~p~~~  284 (287)
                      +|++.+.
T Consensus       103 ~i~~~~~  109 (128)
T 3a7l_A          103 KIKASDE  109 (128)
T ss_dssp             EEEESCG
T ss_pred             EEEECCH
Confidence            9997653

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.99  E-value=3.8e-10  Score=93.80  Aligned_cols=58  Identities=19%  Similarity=0.350  Sum_probs=53.0

Q ss_pred             ccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCee---cCCC-eEEEEecCCC
Q 023091          227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAV---GFGD-PLIAVLPSFH  284 (287)
Q Consensus       227 V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~V---e~Gq-pL~~I~p~~~  284 (287)
                      .++||.|++||+||+||+||++++|.||++|+|++++   .++.+.|   .||+ +||+|++.+.
T Consensus        44 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~  108 (128)
T 1onl_A           44 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDM  108 (128)
T ss_dssp             BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCG
T ss_pred             cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCH
Confidence            4999999999999999999999999999999999996   5688888   7998 9999997653

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=98.60  E-value=6.3e-08  Score=80.36  Aligned_cols=57  Identities=21%  Similarity=0.271  Sum_probs=51.2

Q ss_pred             cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCCC
Q 023091          228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSFH  284 (287)
Q Consensus       228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~~  284 (287)
                      ++|+.|++|+.+|.||++|+..+|.||++|+|++++   .++-+.|+   ||+ +||+|++.+.
T Consensus        41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~  104 (125)
T 3klr_A           41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNP  104 (125)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred             CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCH
Confidence            899999999999999999999999999999999995   66777776   887 9999997653

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=98.46  E-value=2.8e-07  Score=78.14  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=49.5

Q ss_pred             cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCCC
Q 023091          228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSFH  284 (287)
Q Consensus       228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~~  284 (287)
                      ++|+.|++||.+|.||++|...+|.||++|+|++++   .++-+.|+   ||+ +|++|++.+.
T Consensus        63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d~  126 (143)
T 3mxu_A           63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDE  126 (143)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSCT
T ss_pred             CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECCH
Confidence            899999999999999999999999999999999997   34444553   786 9999998653

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=98.36  E-value=2.3e-07  Score=78.15  Aligned_cols=55  Identities=20%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCee---cCCC-eEEEEecC
Q 023091          228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAV---GFGD-PLIAVLPS  282 (287)
Q Consensus       228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~V---e~Gq-pL~~I~p~  282 (287)
                      ++|+.|++||.+|.||++|+..+|.||++|+|++++   .++-+.|   .||+ +||+|++.
T Consensus        58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~  119 (137)
T 3tzu_A           58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT  119 (137)
T ss_dssp             CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE
T ss_pred             CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh
Confidence            899999999999999999999999999999999995   5666666   4886 99999864

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.27  E-value=2.2e-06  Score=79.14  Aligned_cols=73  Identities=25%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe--------------------------------
Q 023091          200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT--------------------------------  247 (287)
Q Consensus       200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~--------------------------------  247 (287)
                      ....|.++..|.+...          +|++||.|++||+|+.|+.-.+                                
T Consensus        56 ~~~~v~~~~~G~V~~v----------~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~  125 (359)
T 3lnn_A           56 KLVKVLPPLAGRIVSL----------NKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEI  125 (359)
T ss_dssp             SEEEECCSSCEEEEEC----------CSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred             cEEEEeccCCEEEEEE----------EcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4578999999999875          7999999999999999996542                                


Q ss_pred             --------------------------------------------eeeeecCCCeEEEEEecCCCCeecC-CCeEEEEecC
Q 023091          248 --------------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGF-GDPLIAVLPS  282 (287)
Q Consensus       248 --------------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~-GqpL~~I~p~  282 (287)
                                                                  ...|+||++|+|.++.++.|+.|.. |++|+.|...
T Consensus       126 ~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~  205 (359)
T 3lnn_A          126 AAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL  205 (359)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence                                                        2479999999999999999999999 9999998753

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.18  E-value=4e-06  Score=80.17  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=61.9

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcc-cCCCEEcCCCEEEEEEec----------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPIC-KEGDVIKEGQTIGYLDQF----------------------------------  245 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V-~vGd~Vk~GqvL~iIEam----------------------------------  245 (287)
                      ...|.++..|.+.+.          +| ++||.|++||+|+.|+.-                                  
T Consensus       121 ~~~v~a~~~G~V~~v----------~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~  190 (413)
T 3ne5_B          121 YAIVQARAAGFIDKV----------YPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGM  190 (413)
T ss_dssp             EEEECCSSCEEEEEE----------CSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred             eEEEecccCEEEEEE----------EeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Confidence            367899999998875          78 999999999999999941                                  


Q ss_pred             --------------CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          246 --------------GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       246 --------------K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                                    .....|+||++|+|.++.++.|+.|..|++||.|..
T Consensus       191 ~~~~~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~  240 (413)
T 3ne5_B          191 PEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG  240 (413)
T ss_dssp             CHHHHHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred             CHHHHHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence                          123579999999999999999999999999999863

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.17  E-value=1.1e-06  Score=78.49  Aligned_cols=72  Identities=24%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC----------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG----------------------------------  246 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK----------------------------------  246 (287)
                      ...|.++..|.+...          +|++||.|++||+|+.|+...                                  
T Consensus        22 ~~~v~a~~~G~V~~v----------~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~   91 (277)
T 2f1m_A           22 IAEVRPQVSGIILKR----------NFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG   91 (277)
T ss_dssp             EEEECCSSCEEEEEE----------CSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             EEEEEccccEEEEEE----------EcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367999999999875          799999999999999998531                                  


Q ss_pred             -------------------------------------eeeeeecCCCeEEEEEecCCCCeecCC--CeEEEEecC
Q 023091          247 -------------------------------------TELPVKSDVAGEVLKLLFDDGDAVGFG--DPLIAVLPS  282 (287)
Q Consensus       247 -------------------------------------~~~eV~Ap~sG~Vveilv~dGd~Ve~G--qpL~~I~p~  282 (287)
                                                           -...|+||++|+|..+.++.|+.|..|  ++|+.|...
T Consensus        92 ~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~  166 (277)
T 2f1m_A           92 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL  166 (277)
T ss_dssp             STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence                                                 024799999999999999999999999  599998653

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=98.15  E-value=2.7e-06  Score=73.05  Aligned_cols=56  Identities=16%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             cCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCC
Q 023091          228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSF  283 (287)
Q Consensus       228 ~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~  283 (287)
                      ++|+.|++|+.+|.||++|...+|.||++|+|++++   .++-+.|+   ||+ +|++|++.+
T Consensus        68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d  130 (155)
T 3hgb_A           68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDS  130 (155)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCT
T ss_pred             CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECC
Confidence            899999999999999999999999999999999997   34455554   776 999999875

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=98.12  E-value=4.7e-06  Score=76.42  Aligned_cols=71  Identities=21%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---------------------------------  247 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---------------------------------  247 (287)
                      ...|.++..|.+...          +|++||.|++||+|+.|+....                                 
T Consensus        31 ~~~v~~~~~G~V~~v----------~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~  100 (341)
T 3fpp_A           31 KVDVGAQVSGQLKTL----------SVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYS  100 (341)
T ss_dssp             EEECCCSSCEEEEEE----------CCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EEEEeccCCcEEEEE----------EeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999875          7999999999999999986311                                 


Q ss_pred             ----------------------------------------------------eeeeecCCCeEEEEEecCCCCeecCCCe
Q 023091          248 ----------------------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDP  275 (287)
Q Consensus       248 ----------------------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~Gqp  275 (287)
                                                                          ...|+||++|+|.++.++.|+.|..|++
T Consensus       101 r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~  180 (341)
T 3fpp_A          101 RQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ  180 (341)
T ss_dssp             HHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTS
T ss_pred             HHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCC
Confidence                                                                1359999999999999999999999997


Q ss_pred             ---EEEEec
Q 023091          276 ---LIAVLP  281 (287)
Q Consensus       276 ---L~~I~p  281 (287)
                         |+.|..
T Consensus       181 ~~~l~~i~~  189 (341)
T 3fpp_A          181 APNILTLAD  189 (341)
T ss_dssp             CCCCEEEEC
T ss_pred             CceEEEEec
Confidence               888764

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.97  E-value=6.5e-06  Score=77.17  Aligned_cols=72  Identities=22%  Similarity=0.256  Sum_probs=62.0

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe---------------------------------
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT---------------------------------  247 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~---------------------------------  247 (287)
                      ...|.++..|.+...          +|++||.|++||+|+.|+....                                 
T Consensus        43 ~~~v~a~v~G~V~~v----------~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~  112 (369)
T 1vf7_A           43 IAEVRPQVNGIILKR----------LFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQ  112 (369)
T ss_dssp             EEEECCSSCEEEEEC----------CSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred             EEEEEeeCceEEEEE----------EcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence            468999999999874          7999999999999999985321                                 


Q ss_pred             ------------------------eeeeecCCCeEEEEEecCCCCeecCC--CeEEEEecC
Q 023091          248 ------------------------ELPVKSDVAGEVLKLLFDDGDAVGFG--DPLIAVLPS  282 (287)
Q Consensus       248 ------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~G--qpL~~I~p~  282 (287)
                                              ...|+||++|+|.++.++.|+.|..|  ++|+.|...
T Consensus       113 ~~~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~  173 (369)
T 1vf7_A          113 QYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL  173 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence                                    24799999999999999999999995  899998753

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=97.85  E-value=6e-05  Score=70.70  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=58.3

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec----CeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPL  276 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL  276 (287)
                      ...|+||..|.|+.           +++.||.|++||+|+.|...    ....+|+||.+|+|....  ..-.|..|+.|
T Consensus       257 ~~~v~A~~~Gl~~~-----------~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l  323 (331)
T 3na6_A          257 DCYLFSEHDGLFEI-----------MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCA  323 (331)
T ss_dssp             CCCEECSSCEEEEE-----------SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEE
T ss_pred             cEEEeCCCCeEEEE-----------cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEE
Confidence            35789999998874           68999999999999999974    457899999999998765  45689999999


Q ss_pred             EEEec
Q 023091          277 IAVLP  281 (287)
Q Consensus       277 ~~I~p  281 (287)
                      |.|..
T Consensus       324 ~~Ia~  328 (331)
T 3na6_A          324 AVIGV  328 (331)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99864

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=97.67  E-value=0.00019  Score=67.70  Aligned_cols=68  Identities=22%  Similarity=0.302  Sum_probs=58.4

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec----CeeeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF----GTELPVKSDVAGEVLKLLFDDGDAVGFGDPL  276 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam----K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL  276 (287)
                      ...++||..|.|..           .++.||.|++||+|+.|+.+    ++..+|+||.+|+|..+.  ....|..|+.|
T Consensus       267 ~~~v~A~~~G~~~~-----------~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l  333 (354)
T 3cdx_A          267 DAYVMAPRTGLFEP-----------THYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAV  333 (354)
T ss_dssp             GGEEECSSCEEEEE-----------SCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEE
T ss_pred             cEEEECCCCEEEEE-----------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEE
Confidence            45789999997653           57899999999999999984    677899999999998775  67789999999


Q ss_pred             EEEec
Q 023091          277 IAVLP  281 (287)
Q Consensus       277 ~~I~p  281 (287)
                      |.|..
T Consensus       334 ~~ia~  338 (354)
T 3cdx_A          334 AVVME  338 (354)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99864

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=97.66  E-value=0.00015  Score=69.20  Aligned_cols=69  Identities=17%  Similarity=0.161  Sum_probs=59.1

Q ss_pred             CceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe------cCeeeeeecCCCeEEEEEecCCCCeecCC
Q 023091          200 GYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ------FGTELPVKSDVAGEVLKLLFDDGDAVGFG  273 (287)
Q Consensus       200 ~~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa------mK~~~eV~Ap~sG~Vveilv~dGd~Ve~G  273 (287)
                      +...|+||..|.|+.           .++.||.|++||+|+.|-.      .....+|+||.+|+|.-..  ..-.|..|
T Consensus       289 ~~~~v~A~~~Gl~~~-----------~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G  355 (368)
T 3fmc_A          289 NYRKFHAPKAGMVEY-----------LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQG  355 (368)
T ss_dssp             GEEEEECSSCEEEEE-----------CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTT
T ss_pred             CcEEEecCCCEEEEE-----------eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCC
Confidence            356899999999984           6999999999999999987      3466899999999997665  44789999


Q ss_pred             CeEEEEec
Q 023091          274 DPLIAVLP  281 (287)
Q Consensus       274 qpL~~I~p  281 (287)
                      +.|+.|-.
T Consensus       356 ~~l~~i~~  363 (368)
T 3fmc_A          356 TELYKVMT  363 (368)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEee
Confidence            99999864

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.62  E-value=2.6e-05  Score=60.85  Aligned_cols=46  Identities=15%  Similarity=0.206  Sum_probs=43.2

Q ss_pred             CCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          236 GQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       236 GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      |..+|.++.++....|.|+.+|+|.++++++||.|..||+|++|+.
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~   50 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV   50 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence            5677999999999999999999999999999999999999999985

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.49  E-value=6.9e-06  Score=75.96  Aligned_cols=69  Identities=22%  Similarity=0.309  Sum_probs=58.4

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe----------------------------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT----------------------------------  247 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~----------------------------------  247 (287)
                      ..|.++..|.+...          +|++||.|++||+|+.|+....                                  
T Consensus        33 ~~v~~~~~G~V~~v----------~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r  102 (369)
T 4dk0_A           33 VDVGAQVSGKITKL----------YVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQR  102 (369)
T ss_dssp             CCBCCCSCSBCCEE----------CCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred             EEEecCCCcEEEEE----------EECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999988664          7999999999999999986421                                  


Q ss_pred             ---------------------------------------------------eeeeecCCCeEEEEEecCCCCeecCCCe-
Q 023091          248 ---------------------------------------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDP-  275 (287)
Q Consensus       248 ---------------------------------------------------~~eV~Ap~sG~Vveilv~dGd~Ve~Gqp-  275 (287)
                                                                         ...|+||++|+|.++.++.|+.|..|++ 
T Consensus       103 ~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~  182 (369)
T 4dk0_A          103 LSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTT  182 (369)
T ss_dssp             HHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSC
T ss_pred             HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCc
Confidence                                                               1259999999999999999999999998 


Q ss_pred             --EEEEe
Q 023091          276 --LIAVL  280 (287)
Q Consensus       276 --L~~I~  280 (287)
                        |+.|.
T Consensus       183 ~~l~~i~  189 (369)
T 4dk0_A          183 PTIIKVA  189 (369)
T ss_dssp             CCCBBCC
T ss_pred             ceEEEEc
Confidence              76654

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=97.35  E-value=0.0004  Score=59.69  Aligned_cols=65  Identities=22%  Similarity=0.297  Sum_probs=54.4

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEEEE---------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVLKL---------------  262 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vvei---------------  262 (287)
                      ..|.||+.|++..-           -++.|.+-.    |+.+++....   ..|+||++|+|..+               
T Consensus        13 ~~i~aP~~G~vv~l-----------~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~   78 (161)
T 1f3z_A           13 IEIIAPLSGEIVNI-----------EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGV   78 (161)
T ss_dssp             EEEECSSCEEEEEG-----------GGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred             cEEEecCCeEEEEe-----------EECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCC
Confidence            46999999999864           355665555    8888887764   57899999999998               


Q ss_pred             --------------------ecCCCCeecCCCeEEEEe
Q 023091          263 --------------------LFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       263 --------------------lv~dGd~Ve~GqpL~~I~  280 (287)
                                          +|+.||.|..||+|+++.
T Consensus        79 evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           79 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence                                899999999999999886

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=97.31  E-value=0.00045  Score=58.88  Aligned_cols=65  Identities=18%  Similarity=0.257  Sum_probs=54.4

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEEE----------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVLK----------------  261 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vve----------------  261 (287)
                      ..|.||+.|++..-           -++.|.+-.    |+.+++....   ..++||++|+|..                
T Consensus         8 ~~i~aP~~G~vv~l-----------~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~   73 (154)
T 2gpr_A            8 LKVLAPCDGTIITL-----------DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGV   73 (154)
T ss_dssp             EEEECSSSEEEECG-----------GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSC
T ss_pred             CEEEecCCeEEEEe-----------eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCC
Confidence            46999999999864           466666655    8888888764   5899999999998                


Q ss_pred             -------------------EecCCCCeecCCCeEEEEe
Q 023091          262 -------------------LLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       262 -------------------ilv~dGd~Ve~GqpL~~I~  280 (287)
                                         ++|+.||.|..||+|+++.
T Consensus        74 evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           74 EILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             EEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence                               4899999999999999886

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=97.04  E-value=0.00041  Score=59.62  Aligned_cols=64  Identities=28%  Similarity=0.388  Sum_probs=53.3

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEEEE----------------
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVLKL----------------  262 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vvei----------------  262 (287)
                      .|.||+.|++..-           -++.|.+-.    |+.+++.-.   ...|+||++|+|..+                
T Consensus        14 ~i~aP~~G~vv~l-----------~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~e   79 (162)
T 1ax3_A           14 VFVSPITGEIHPI-----------TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGRE   79 (162)
T ss_dssp             SCCCCCSEEEEEG-----------GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCE
T ss_pred             EEEecCceEEEEe-----------EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCE
Confidence            4899999999864           456666555    888888776   357899999999988                


Q ss_pred             -------------------ecCCCCeecCCCeEEEEe
Q 023091          263 -------------------LFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       263 -------------------lv~dGd~Ve~GqpL~~I~  280 (287)
                                         +|+.||.|..||+|+++.
T Consensus        80 vLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           80 ILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             EEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred             EEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence                               899999999999999886

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=97.00  E-value=0.00091  Score=48.03  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .|.|+.+|+|.+++++.|+.|..||+|++|+..
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   33 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM   33 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence            478999999999999999999999999999854

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.87  E-value=0.0015  Score=46.96  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.|+.+|+|.+++++.|+.|..||+|++|+..
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   39 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM   39 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecc
Confidence            4689999999999999999999999999999853

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=96.87  E-value=0.0045  Score=57.50  Aligned_cols=67  Identities=16%  Similarity=0.281  Sum_probs=56.0

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe----cCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ----FGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI  277 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa----mK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~  277 (287)
                      ..++||..|.|+.           +++.|+.|++||+|+.|-.    +....+|+||.+|.|.-..  ..-.|..|+.||
T Consensus       258 ~~~~a~~~G~~~~-----------~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~  324 (332)
T 2qj8_A          258 DQLKSPSPGIFEP-----------RCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVA  324 (332)
T ss_dssp             GEEECSSSEEEEE-----------CSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEE
T ss_pred             eEEeCCCCeEEEE-----------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEE
Confidence            4789999998873           5889999999999999965    5567899999999997665  556788999999


Q ss_pred             EEec
Q 023091          278 AVLP  281 (287)
Q Consensus       278 ~I~p  281 (287)
                      .|-.
T Consensus       325 ~ia~  328 (332)
T 2qj8_A          325 ILAR  328 (332)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            8853

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=96.75  E-value=0.0018  Score=47.19  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.|+.+|+|.++++++|+.|..||+|+.|+..
T Consensus         9 ~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~   42 (77)
T 1dcz_A            9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM   42 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred             eEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence            5689999999999999999999999999999853

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=96.60  E-value=0.0025  Score=50.13  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.|+++|+|.++++++|+.|..||+|++|...
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            4689999999999999999999999999999864

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=96.55  E-value=0.0017  Score=49.02  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.||.+|+|.++++++|+.|+.||+|+.|+..
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   39 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM   39 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEECS
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEEec
Confidence            4699999999999999999999999999999853

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=96.25  E-value=0.005  Score=54.62  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=39.4

Q ss_pred             CCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          229 EGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       229 vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      .|+.-..=..-|.|+... ...|.++++|+|.++++++||.|..||+|++|..
T Consensus         4 ~~~~~~~v~~~G~v~~~~-~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~   55 (277)
T 2f1m_A            4 TEPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP   55 (277)
T ss_dssp             ------CCEEEEEEECSE-EEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred             eeccceEEEEEEEEEeee-EEEEEccccEEEEEEEcCCCCEecCCCEEEEECc
Confidence            344344445567788753 4679999999999999999999999999999975

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=96.03  E-value=0.0054  Score=47.53  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ...|.|+.+|+|.++++++|+.|..||+|++|+..
T Consensus        14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~   48 (99)
T 2ejm_A           14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAM   48 (99)
T ss_dssp             CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESS
T ss_pred             ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcc
Confidence            35689999999999999999999999999999854

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=95.92  E-value=0.0048  Score=47.47  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=31.1

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.|+.+|+|.+++++.|+.|..||+|++|+..
T Consensus        26 ~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~   59 (94)
T 2jku_A           26 SVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM   59 (94)
T ss_dssp             CCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred             eEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence            5689999999999999999999999999999853

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=95.82  E-value=0.011  Score=52.17  Aligned_cols=51  Identities=22%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             CCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe-----------------------------cCCCCeec
Q 023091          221 KKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL-----------------------------FDDGDAVG  271 (287)
Q Consensus       221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil-----------------------------v~dGd~Ve  271 (287)
                      -++..+|+.|+.|++||+||.=.      +|.++++|+|.+..                             +++|+.|.
T Consensus        19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~   92 (193)
T 2xha_A           19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK   92 (193)
T ss_dssp             TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred             CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence            36777899999999999999654      89999999987544                             67777788


Q ss_pred             CCCeEE
Q 023091          272 FGDPLI  277 (287)
Q Consensus       272 ~GqpL~  277 (287)
                      .|++|+
T Consensus        93 ~GdvLA   98 (193)
T 2xha_A           93 QGLPLS   98 (193)
T ss_dssp             TTSBSS
T ss_pred             CCCEEe
Confidence            787775

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=95.78  E-value=0.0071  Score=44.48  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             eeeecCCCeEEEEE-------ecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKL-------LFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vvei-------lv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.||..|+|.++       +++.|+.|..||+|++|+..
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~   45 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAM   45 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEET
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEec
Confidence            36899999999998       99999999999999999854

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=95.74  E-value=0.011  Score=53.84  Aligned_cols=45  Identities=27%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             CEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          237 QTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       237 qvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..-|.|++.. ...|.++++|+|.++++++|+.|..||+|++|.+.
T Consensus        21 ~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           21 LATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             EEEEEEEESS-EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred             EEEEEEEeeE-EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence            3456777664 46899999999999999999999999999999753

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=95.65  E-value=0.014  Score=53.47  Aligned_cols=46  Identities=22%  Similarity=0.260  Sum_probs=39.6

Q ss_pred             CEEEEEEec-CeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          237 QTIGYLDQF-GTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       237 qvL~iIEam-K~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..-|.|++. .-...|.++++|+|.++++++|+.|..||+|++|.+.
T Consensus        45 ~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~   91 (359)
T 3lnn_A           45 NLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA   91 (359)
T ss_dssp             EEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred             EEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            345677764 4567899999999999999999999999999999864

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=95.29  E-value=0.01  Score=43.37  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=27.5

Q ss_pred             cCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          253 SDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ++.+|+|.++++++||.|..||+|+.|+..
T Consensus        12 ~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~   41 (77)
T 2l5t_A           12 GVTEGEIVRWDVKEGDMVEKDQDLVEVMTD   41 (77)
T ss_dssp             SCCCEEEEECSCCTTCEECSCCCCCEEESS
T ss_pred             CCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence            468999999999999999999999999864

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=95.01  E-value=0.014  Score=54.38  Aligned_cols=43  Identities=33%  Similarity=0.495  Sum_probs=36.5

Q ss_pred             EEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          238 TIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       238 vL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|.|++.. ...|.++++|+|.++++++|+.|..||+|++|.+
T Consensus        34 ~~G~v~~~~-~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~   76 (369)
T 1vf7_A           34 LPGRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   76 (369)
T ss_dssp             EEEECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEEEEeee-EEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            345666643 4679999999999999999999999999999975

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=95.00  E-value=0.038  Score=41.53  Aligned_cols=28  Identities=21%  Similarity=0.257  Sum_probs=26.1

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+|.+++++.||.|..||+|+.|+..
T Consensus        18 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   45 (87)
T 3crk_C           18 TMGTVQRWEKKVGEKLSEGDLLAEIETD   45 (87)
T ss_dssp             CEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred             CcEEEEEEEcCCCCEEcCCCEEEEEECC
Confidence            6899999999999999999999999864

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=94.95  E-value=0.063  Score=47.04  Aligned_cols=65  Identities=20%  Similarity=0.246  Sum_probs=50.2

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEE----cCCCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVI----KEGQTIGYLDQFGTELPVKSDVAGEVL-----------------  260 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~V----k~GqvL~iIEamK~~~eV~Ap~sG~Vv-----------------  260 (287)
                      ..|.||+.|.+..-           -++-|.|    --|+-++++=..   ..|.||++|+|.                 
T Consensus        35 ~~i~aPv~G~vi~L-----------~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~  100 (183)
T 3our_B           35 IEIIAPLSGEIVNI-----------EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGV  100 (183)
T ss_dssp             EEEECSSCEEEEEG-----------GGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEeecceEEEEc-----------hhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCC
Confidence            57999999999864           3444433    237888876543   479999999887                 


Q ss_pred             ------------------EEecCCCCeecCCCeEEEEe
Q 023091          261 ------------------KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 ------------------eilv~dGd~Ve~GqpL~~I~  280 (287)
                                        +.+|++||.|..||+|+++.
T Consensus       101 EvLIHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD  138 (183)
T 3our_B          101 ELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD  138 (183)
T ss_dssp             EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEEEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence                              56688999999999999875

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=94.88  E-value=0.028  Score=44.56  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=30.5

Q ss_pred             CeeeeeecC------CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          246 GTELPVKSD------VAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       246 K~~~eV~Ap------~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      -|+.+|+.|      ..|+|.+++++.||.|..||+|+.|+..
T Consensus         5 p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~   47 (108)
T 2dne_A            5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETD   47 (108)
T ss_dssp             CCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECS
T ss_pred             ccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcC
Confidence            344555555      5899999999999999999999999864

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=94.87  E-value=0.035  Score=42.57  Aligned_cols=28  Identities=21%  Similarity=0.206  Sum_probs=26.2

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+|.+++++.||.|..||+|+.|+..
T Consensus        17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   44 (93)
T 1k8m_A           17 REVTVKEWYVKEGDTVSQFDSICEVQSD   44 (93)
T ss_dssp             CCEEEEEECCCTTCEECSSSCCEEEECS
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEcC
Confidence            6899999999999999999999999854

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=94.84  E-value=0.031  Score=40.86  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ  244 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa  244 (287)
                      ...|+||..|++.+.          ++++||.|..|+.|+.|+.
T Consensus        43 ~~~i~Ap~~G~v~~~----------~v~~G~~V~~G~~l~~i~~   76 (80)
T 1qjo_A           43 SMEVPAPFAGVVKEL----------KVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEBSSCEEEEEC----------CCCTTCEECTTCCCEEEES
T ss_pred             eEEEeCCCCEEEEEE----------ecCCCCEECCCCEEEEEEc
Confidence            578999999999875          7899999999999999974

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=94.79  E-value=0.031  Score=53.25  Aligned_cols=51  Identities=22%  Similarity=0.321  Sum_probs=43.2

Q ss_pred             CCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe-----------------------------cCCCCeec
Q 023091          221 KKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL-----------------------------FDDGDAVG  271 (287)
Q Consensus       221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil-----------------------------v~dGd~Ve  271 (287)
                      -++..+|+.||.|++||+||.=+      +|.++++|+|.+..                             ++||+.|.
T Consensus        59 yga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~  132 (352)
T 2xhc_A           59 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK  132 (352)
T ss_dssp             TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEEC
T ss_pred             CCCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEc
Confidence            46777899999999999999865      88889999886543                             78899999


Q ss_pred             CCCeEE
Q 023091          272 FGDPLI  277 (287)
Q Consensus       272 ~GqpL~  277 (287)
                      .|++|+
T Consensus       133 ~G~vla  138 (352)
T 2xhc_A          133 QGLPLS  138 (352)
T ss_dssp             TTCBSB
T ss_pred             cCcEEe
Confidence            998887

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=94.45  E-value=0.022  Score=41.72  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=27.2

Q ss_pred             cCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          253 SDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       253 Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ++.+|+|.++++++||.|..||+|+.|+..
T Consensus        12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~   41 (79)
T 1ghj_A           12 SIADGTVATWHKKPGEAVKRDELIVDIETD   41 (79)
T ss_dssp             SCSCEEECCCSSCTTSEECSSCEEEEEECS
T ss_pred             CCCCEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence            357999999999999999999999999854

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=94.40  E-value=0.012  Score=54.05  Aligned_cols=54  Identities=26%  Similarity=0.403  Sum_probs=42.7

Q ss_pred             ccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       227 V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      |+.|+.-..=..-|.|+... ...|.++++|+|.++++++|+.|..||+|++|..
T Consensus        12 v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~   65 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESIN-TVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS   65 (369)
T ss_dssp             CCEECCCCCCEEEEEEECSS-CCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred             EEecceeEEEEEeEEEEeee-eEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence            34444444445567777654 3679999999999999999999999999999975

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=94.40  E-value=0.0034  Score=47.13  Aligned_cols=34  Identities=26%  Similarity=0.229  Sum_probs=30.4

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .+|++|.-|+|.+++++.|+.|..||+|+.|+..
T Consensus         3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~   36 (85)
T 2k7v_A            3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGD   36 (85)
T ss_dssp             SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCC
T ss_pred             cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEcc
Confidence            5688888899999999999999999999998753

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=94.39  E-value=0.03  Score=41.18  Aligned_cols=33  Identities=15%  Similarity=0.324  Sum_probs=29.2

Q ss_pred             eeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          250 PVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       250 eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      .+-++..|+|.+++++.||.|..||+|+.|+..
T Consensus         9 ~~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~   41 (81)
T 1gjx_A            9 DIGGHENVDIIAVEVNVGDTIAVDDTLITLETD   41 (81)
T ss_dssp             CCSSCSSEEEEEECCCSSCBCCSSCCCEEEECS
T ss_pred             CCCCCCcEEEEEEEcCCCCEECCCCEEEEEEeC
Confidence            344678999999999999999999999999854

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=94.39  E-value=0.05  Score=46.21  Aligned_cols=76  Identities=12%  Similarity=0.112  Sum_probs=47.2

Q ss_pred             eEEeCCcceEEEeccc-------------------------cCCCCCCCcccCCCEEcCCCEEEEEEecC---------e
Q 023091          202 VLVFSPTVGSFRRNRT-------------------------VKGKKQSPICKEGDVIKEGQTIGYLDQFG---------T  247 (287)
Q Consensus       202 ~~V~AP~vGtf~~~ps-------------------------p~~p~~~p~V~vGd~Vk~GqvL~iIEamK---------~  247 (287)
                      ..|+||..|++...-.                         -.|..-..+|++||+|++||.|+.+.-..         +
T Consensus        45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t  124 (154)
T 2gpr_A           45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS  124 (154)
T ss_dssp             SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence            4799999999875310                         01122235899999999999999987322         2


Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      +.-|+. .+  +..+....+..|..|+.|+.++
T Consensus       125 ~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~~  154 (154)
T 2gpr_A          125 PIIFTN-NG--GKTLEIVKMGEVKQGDVVAILK  154 (154)
T ss_dssp             EEEEEE-CS--SCCCSCBCCEEECTTCEEEEEC
T ss_pred             EEEEEC-CC--cceEEEccCceEcCCCEEEEeC
Confidence            222222 11  1123333456788899998763

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=94.26  E-value=0.046  Score=52.01  Aligned_cols=46  Identities=22%  Similarity=0.138  Sum_probs=37.8

Q ss_pred             CEEEEEEec-CeeeeeecCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 023091          237 QTIGYLDQF-GTELPVKSDVAGEVLKLLF-DDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       237 qvL~iIEam-K~~~eV~Ap~sG~Vveilv-~dGd~Ve~GqpL~~I~p~  282 (287)
                      ...+.|+.. .-...|.++++|+|.+++| ++||.|..||+|++|...
T Consensus       109 ~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~  156 (413)
T 3ne5_B          109 SFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP  156 (413)
T ss_dssp             EEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred             EEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence            345666642 3447799999999999998 999999999999999843

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.22  E-value=0.047  Score=42.38  Aligned_cols=28  Identities=32%  Similarity=0.542  Sum_probs=26.0

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+|.+++++.||.|..||+|+.|+..
T Consensus        20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~   47 (98)
T 2dnc_A           20 EEGNIVKWLKKEGEAVSAGDALCEIETD   47 (98)
T ss_dssp             SEECEEEESSCTTCEECTTSEEEEEECS
T ss_pred             ccEEEEEEEcCCCCEeCCCCEEEEEEcc
Confidence            5899999999999999999999999864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=94.15  E-value=0.071  Score=38.96  Aligned_cols=34  Identities=35%  Similarity=0.410  Sum_probs=30.3

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ  244 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa  244 (287)
                      ...|+||..|++...          ++++|+.|..|+.|+.|+.
T Consensus        41 ~~~i~Ap~~G~v~~~----------~v~~G~~V~~g~~l~~i~~   74 (79)
T 1iyu_A           41 SMEVPSPKAGVVKSV----------SVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EEEEECSSSSEEEEE----------SCCTTCEEETTSEEEEEEC
T ss_pred             EEEEECCCCEEEEEE----------EeCCCCEECCCCEEEEEec
Confidence            368999999999875          7899999999999999875

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=93.72  E-value=0.088  Score=43.26  Aligned_cols=28  Identities=21%  Similarity=0.257  Sum_probs=25.9

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          255 VAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+|.+++++.||.|..||+|+.|+..
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~   67 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIETD   67 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEEcC
Confidence            5799999999999999999999999854

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=93.07  E-value=0.041  Score=48.59  Aligned_cols=52  Identities=15%  Similarity=0.264  Sum_probs=42.9

Q ss_pred             CCCCCc--ccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEE--------------------------E--ecCCCCee
Q 023091          221 KKQSPI--CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLK--------------------------L--LFDDGDAV  270 (287)
Q Consensus       221 p~~~p~--V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vve--------------------------i--lv~dGd~V  270 (287)
                      .++-..  |+.|+.|+.||+|+     | ...|-|+.+|+|.=                          +  +|.+||.|
T Consensus        77 vgA~l~~~V~dG~~V~~GdvLA-----K-d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V  150 (193)
T 2xha_A           77 ESAGIEPGLRVGTKVKQGLPLS-----K-NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV  150 (193)
T ss_dssp             GGGCCCTTCCTTCEECTTSBSS-----T-TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred             CCCEEEEEcCCCCEEcCCCEEe-----c-CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEE
Confidence            366777  99999999999999     3 25678889998752                          3  89999999


Q ss_pred             cCCCeEEE
Q 023091          271 GFGDPLIA  278 (287)
Q Consensus       271 e~GqpL~~  278 (287)
                      +.|++|..
T Consensus       151 ~~Ge~L~D  158 (193)
T 2xha_A          151 KQGEMLAE  158 (193)
T ss_dssp             CTTCEEEC
T ss_pred             CCCCCccc
Confidence            99999984

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=93.01  E-value=0.12  Score=44.71  Aligned_cols=40  Identities=25%  Similarity=0.208  Sum_probs=35.8

Q ss_pred             cccCCCEEcCCCEEEEEEecCeee-eeecCCCeEEEEEecC
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTEL-PVKSDVAGEVLKLLFD  265 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~-eV~Ap~sG~Vveilv~  265 (287)
                      ++.+|+.|.+|+.|+.|.+.|... -++||++|+|+-+.--
T Consensus       115 i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~  155 (169)
T 3d4r_A          115 IMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI  155 (169)
T ss_dssp             CCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred             EcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence            789999999999999999999764 6999999999987643

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=92.37  E-value=0.028  Score=41.45  Aligned_cols=29  Identities=21%  Similarity=0.153  Sum_probs=26.3

Q ss_pred             CCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          254 DVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       254 p~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..+|+|.+++++.||.|..||+|+.|+..
T Consensus        14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   42 (80)
T 1pmr_A           14 VADATVATWHKKPGDAVVRDEVLVEIETD   42 (80)
T ss_dssp             CSCEECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred             CccEEEEEEECCCcCEECCCCEEEEEEcc
Confidence            36899999999999999999999999753

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=92.14  E-value=0.14  Score=52.17  Aligned_cols=35  Identities=17%  Similarity=0.219  Sum_probs=32.1

Q ss_pred             eeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          248 ELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       248 ~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ...|+||..|+|++++|++||.|+.||+|+.|+..
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam  646 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAM  646 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECS
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence            35699999999999999999999999999999853

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=91.88  E-value=0.24  Score=43.11  Aligned_cols=48  Identities=21%  Similarity=0.253  Sum_probs=40.6

Q ss_pred             CCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCee
Q 023091          221 KKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAV  270 (287)
Q Consensus       221 p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~V  270 (287)
                      .++-.+|+.||.|++||+||..  ++-..+|-++++|+|.=..+.+|..+
T Consensus        60 yGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~  107 (190)
T 2auk_A           60 YGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI  107 (190)
T ss_dssp             TTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred             CCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence            4778899999999999999965  67788999999999987777776543

>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A

Probab=90.71  E-value=0.29  Score=45.91  Aligned_cols=64  Identities=9%  Similarity=0.023  Sum_probs=48.8

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|.+|..|.+...+        +.++.|+.|++||+|+.+-.    .+|+++.+|.+.-.  . .-.|..|+.+++|-
T Consensus       264 ~~v~a~~~g~~~~~~--------~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i~  327 (350)
T 2bco_A          264 RTIVRLHDDFDFMFD--------DNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALMV  327 (350)
T ss_dssp             EEEECCSSSEEESSC--------TTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEEE
T ss_pred             EEEEcCCCCeEEecc--------ccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEEE
Confidence            467888777665332        35799999999999999843    78999999987643  3 46788899777664

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=89.34  E-value=0.68  Score=39.49  Aligned_cols=42  Identities=26%  Similarity=0.382  Sum_probs=30.8

Q ss_pred             eEEeCCcceEEEeccc-------------------------cCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091          202 VLVFSPTVGSFRRNRT-------------------------VKGKKQSPICKEGDVIKEGQTIGYLD  243 (287)
Q Consensus       202 ~~V~AP~vGtf~~~ps-------------------------p~~p~~~p~V~vGd~Vk~GqvL~iIE  243 (287)
                      ..|+||..|++...-.                         -.|..-..+|++||+|++||.|+.+.
T Consensus        50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence            3789999999865410                         01122344899999999999999987

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=89.00  E-value=0.29  Score=50.60  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=31.3

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|.||..|+|.+++|+.||.|..||+|+.|+.
T Consensus       650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEa  682 (718)
T 3bg3_A          650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSA  682 (718)
T ss_dssp             SCEECSSCEEEEEECSCTTCCBCTTCCCEEEES
T ss_pred             ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEec
Confidence            469999999999999999999999999999985

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=88.68  E-value=0.39  Score=51.96  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=31.8

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.||..|+|.+++|+.||.|+.||+|+.|+..
T Consensus      1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieam 1111 (1150)
T 3hbl_A         1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAM 1111 (1150)
T ss_dssp             SEEECSSSEEEEEECCCTTCEECTTCEEEEEESS
T ss_pred             ceeecCceEEEEEEEeCCCCEECCCCEEEEEEec
Confidence            5799999999999999999999999999999854

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=87.85  E-value=0.48  Score=51.74  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|.||..|+|.+++|+.||.|+.||+|+.|+..
T Consensus      1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 1201 (1236)
T 3va7_A         1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAM 1201 (1236)
T ss_dssp             EEEECSSCEEEEEESSCTTCEECSSCEEEEEEET
T ss_pred             cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEec
Confidence            4599999999999999999999999999999854

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=87.37  E-value=0.19  Score=47.78  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=38.4

Q ss_pred             CCCCCc--ccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEE------------------E----------EecCCCCee
Q 023091          221 KKQSPI--CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVL------------------K----------LLFDDGDAV  270 (287)
Q Consensus       221 p~~~p~--V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vv------------------e----------ilv~dGd~V  270 (287)
                      .++-..  |+.|+.|+.||+|+     | ...|-|+++|+|.                  +          ++|.+||.|
T Consensus       117 ~ga~l~~~v~~g~~v~~G~vla-----k-~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V  190 (352)
T 2xhc_A          117 ESAGIEPGLRVGTKVKQGLPLS-----K-NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV  190 (352)
T ss_dssp             GGGCBCTTCCTTCEECTTCBSB-----S-SSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred             CCcEEEEecCCCCEEccCcEEe-----c-CceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEE
Confidence            366677  99999999999887     2 2446666666654                  2          237789999


Q ss_pred             cCCCeEEE
Q 023091          271 GFGDPLIA  278 (287)
Q Consensus       271 e~GqpL~~  278 (287)
                      +.|++|..
T Consensus       191 ~~G~~l~d  198 (352)
T 2xhc_A          191 KQGEMLAE  198 (352)
T ss_dssp             CTTCEEEC
T ss_pred             eCCCCccc
Confidence            99999873

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=85.58  E-value=0.8  Score=50.50  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             CCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEE
Q 023091          222 KQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVL  260 (287)
Q Consensus       222 ~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vv  260 (287)
                      ++-.+|+.||.|++||+||..  +.-..+|-++++|+|.
T Consensus      1000 gs~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D         1000 GAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp             TCEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred             CCEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence            566789999999999999986  4556789999999774

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=84.74  E-value=0.68  Score=50.14  Aligned_cols=33  Identities=24%  Similarity=0.459  Sum_probs=28.2

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|.||..|+|.+++++.||.|+.||+|+.|+.
T Consensus      1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A         1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp             TEEECSSCEEEEEECCSSCCCC---CEEEEEEC
T ss_pred             ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEc
Confidence            469999999999999999999999999999984

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=84.36  E-value=0.5  Score=40.32  Aligned_cols=42  Identities=29%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             eEEeCCcceEEEeccc-------------------------cCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091          202 VLVFSPTVGSFRRNRT-------------------------VKGKKQSPICKEGDVIKEGQTIGYLD  243 (287)
Q Consensus       202 ~~V~AP~vGtf~~~ps-------------------------p~~p~~~p~V~vGd~Vk~GqvL~iIE  243 (287)
                      ..|+||..|++...-.                         -.|..-..+|+.||+|++||.|+.+.
T Consensus        50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           50 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence            3789999999875410                         01122334899999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	1e-09
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	4e-07
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	6e-07
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	3e-06
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	6e-05
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	9e-05
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-04
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-04
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	0.001

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 194 EASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKS 253
           E SG     +V SP VG+F R             + G  +  G T+  ++       +++
Sbjct: 1   EISGH----IVRSPMVGTFYR---TPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEA 53

Query: 254 DVAGEVLKLLFDDGDAVGFGDPLIAV 279
           D +G V  +L + G  V F +PL+ +
Sbjct: 54  DKSGTVKAILVESGQPVEFDEPLVVI 79

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSFH 284
            K GD + E   +  +      + + S V G+VL++L  +G     G  LI +    +
Sbjct: 23  VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY 80

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 195 ASGSNGYVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSD 254
            +G  G   + +P  G+  +           + KEGD +K GQT+  L+    E  + + 
Sbjct: 2   GAGKAGEGEIPAPLAGTVSK----------ILVKEGDTVKAGQTVLVLEAMKMETEINAP 51

Query: 255 VAGEVLKLLFDDGDAVGFGDPLI 277
             G+V K+L  + DAV  G  LI
Sbjct: 52  TDGKVEKVLVKERDAVQGGQGLI 74

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
           KEGD + +  +I  +      + + S   G + KL ++  D    G PL+ +
Sbjct: 27  KEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (90), Expect = 6e-05
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
            K GD +   Q++  ++     + V +  AG V +L  + GD V  G  ++
Sbjct: 22  VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM 72

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV 279
             GD I    T+  L+     + V ++VAG V ++    GD +  G  ++ V
Sbjct: 24  NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVV 75

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS 282
            K GD+I+  Q +  L+     + V S  AG V  +    GD +  GD +I + P+
Sbjct: 20  VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 228 KEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
           K GD +   + +  ++     L V +   G +  +L D+G  V     L 
Sbjct: 25  KPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILG 74

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 227 CKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI 277
            K G+ +K  + I  ++     + V ++  G + +++ ++GD V  G+ L 
Sbjct: 23  KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLG 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.9
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.79
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.66
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.6
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.56
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.54
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.52
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.52
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.4
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.4
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.78
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.76
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.96
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	96.58
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	96.0
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	95.79
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	95.67
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	95.55
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	95.41
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.35
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	95.34
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	95.32
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	94.25
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	93.87
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	93.79
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	93.12
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	89.7
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	89.68
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	89.34
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	81.01

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.9e-24  Score=162.98  Aligned_cols=76  Identities=25%  Similarity=0.489  Sum_probs=73.0

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|+|||+|+||+.|+   |+.++||++||+|++||+||+||+|||+++|+||++|+|.++++++|+.|++||+||.|+
T Consensus         5 ~~I~aPm~G~~~~~~~---p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_           5 HIVRSPMVGTFYRTPS---PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSSEEEESSSS---TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CEEeCCCcEEEEecCC---CCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            4799999999999976   688999999999999999999999999999999999999999999999999999999985

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.79  E-value=2.4e-19  Score=135.21  Aligned_cols=69  Identities=32%  Similarity=0.453  Sum_probs=66.4

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..|+|||.|++++|          +|++||.|++||+||+||+||+.++|+||++|+|.++++++||.|++||+||+|.
T Consensus         9 ~~v~ap~~G~v~~~----------~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~ig   77 (77)
T d1dcza_           9 GEIPAPLAGTVSKI----------LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SEEEBSSSCEEEEE----------CCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CEEECCCCcEEEEE----------EcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEeC
Confidence            47999999999986          9999999999999999999999999999999999999999999999999999973

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.66  E-value=2e-16  Score=119.59  Aligned_cols=72  Identities=26%  Similarity=0.342  Sum_probs=65.8

Q ss_pred             EEeCC---cceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEE
Q 023091          203 LVFSP---TVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAV  279 (287)
Q Consensus       203 ~V~AP---~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I  279 (287)
                      .|+.|   +.|++.+          |+|++||.|++||+||+||+||++++|+|+++|+|.+++++.|+.|..||+|+.|
T Consensus         3 ~i~~P~~g~~g~i~~----------~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~i   72 (79)
T d1iyua_           3 IIRVPDIGGDGEVIE----------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIEL   72 (79)
T ss_dssp             EEECCCCSSEEEEEE----------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEE
T ss_pred             EEECCCCCCCEEEEE----------EEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEE
Confidence            57888   4557766          5999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCC
Q 023091          280 LPSFH  284 (287)
Q Consensus       280 ~p~~~  284 (287)
                      ++...
T Consensus        73 e~~~~   77 (79)
T d1iyua_          73 EPAAG   77 (79)
T ss_dssp             ECCCS
T ss_pred             ecCcc
Confidence            98653

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.4e-15  Score=115.07  Aligned_cols=72  Identities=22%  Similarity=0.246  Sum_probs=65.4

Q ss_pred             eEEeCCcce----EEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEE
Q 023091          202 VLVFSPTVG----SFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLI  277 (287)
Q Consensus       202 ~~V~AP~vG----tf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~  277 (287)
                      ..|+.|..|    ++.+          |++++||.|++||+||+||+||+.++|+|+.+|+|.+++++.|+.|..|++|+
T Consensus         3 ~ei~~P~lG~~~~~v~~----------~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~   72 (80)
T d1qjoa_           3 KEVNVPDIGGDEVEVTE----------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM   72 (80)
T ss_dssp             EEECCCCCSSSCEEEEE----------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCE
T ss_pred             eEEECCCCCCCeEEEEE----------EEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEE
Confidence            357778777    5554          69999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCC
Q 023091          278 AVLPSF  283 (287)
Q Consensus       278 ~I~p~~  283 (287)
                      .|+.++
T Consensus        73 ~ie~eg   78 (80)
T d1qjoa_          73 IFEVEG   78 (80)
T ss_dssp             EEESCC
T ss_pred             EEecCc
Confidence            998754

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.56  E-value=2.5e-15  Score=113.68  Aligned_cols=61  Identities=18%  Similarity=0.224  Sum_probs=57.9

Q ss_pred             CCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          222 KQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       222 ~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ...|++++||.|++||+||+||+||+.++|+||.+|+|.+++++.|+.|..|++|+.|...
T Consensus        18 i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_          18 VATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             ECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             EEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            3457999999999999999999999999999999999999999999999999999999764

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.54  E-value=2e-16  Score=120.01  Aligned_cols=77  Identities=22%  Similarity=0.242  Sum_probs=66.9

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      ..|+.|..|....     +...+|++++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|+.|++
T Consensus         3 iei~~P~lg~~~~-----~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~   77 (81)
T d1gjxa_           3 VELKVPDIGGHEN-----VDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             EECCCCCCSSCSS-----EEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             EEEECCCCCCCcE-----EEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            4567777774322     13456899999999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 023091          282 SF  283 (287)
Q Consensus       282 ~~  283 (287)
                      ++
T Consensus        78 ~g   79 (81)
T d1gjxa_          78 EG   79 (81)
T ss_dssp             SC
T ss_pred             cc
Confidence            64

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.52  E-value=2e-15  Score=114.55  Aligned_cols=65  Identities=23%  Similarity=0.343  Sum_probs=60.9

Q ss_pred             ceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          209 VGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       209 vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      -|++.+          |+|++||.|++||+||.||+||+.++|+||.+|+|.+++++.||.|..|++|+.|+.++
T Consensus        15 eg~i~~----------w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~G   79 (80)
T d1laba_          15 EGEIVK----------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   79 (80)
T ss_dssp             SEEEEE----------CCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCSC
T ss_pred             eEEEEE----------EEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            377776          49999999999999999999999999999999999999999999999999999998765

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-14  Score=111.53  Aligned_cols=59  Identities=22%  Similarity=0.305  Sum_probs=56.9

Q ss_pred             CcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          225 PICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       225 p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      |++++||.|++||+||.||+||+.++|+||++|+|.+++++.|+.|..|++|+.|+...
T Consensus        24 w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~~   82 (87)
T d1k8ma_          24 WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (87)
T ss_dssp             ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             EEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            59999999999999999999999999999999999999999999999999999998654

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.1e-13  Score=105.33  Aligned_cols=72  Identities=22%  Similarity=0.390  Sum_probs=63.1

Q ss_pred             eEEeCCcc------eEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCC-eecCCC
Q 023091          202 VLVFSPTV------GSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGD-AVGFGD  274 (287)
Q Consensus       202 ~~V~AP~v------Gtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd-~Ve~Gq  274 (287)
                      ..|+-|..      |++.+          |+|++||.|++||+||.||+||+.++|+|+.+|+|.++++++|+ .|..|+
T Consensus         6 iei~mP~lg~~~~eg~i~~----------w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~   75 (102)
T d1y8ob1           6 MQVLLPALSPTMTMGTVQR----------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGT   75 (102)
T ss_dssp             EEEECCCSSTTCSEEEEEE----------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTC
T ss_pred             EEEECCCCCCCccEEEEEE----------EEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCC
Confidence            45666643      56666          59999999999999999999999999999999999999999997 699999


Q ss_pred             eEEEEecCC
Q 023091          275 PLIAVLPSF  283 (287)
Q Consensus       275 pL~~I~p~~  283 (287)
                      +|+.|....
T Consensus        76 ~ia~i~~~~   84 (102)
T d1y8ob1          76 PLCIIVEKE   84 (102)
T ss_dssp             EEEEEESSG
T ss_pred             EEEEEecCC
Confidence            999996543

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=5.7e-15  Score=112.06  Aligned_cols=75  Identities=16%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             EEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEecCCCCeecCCCeEEEEec
Q 023091          203 LVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLP  281 (287)
Q Consensus       203 ~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p  281 (287)
                      .|+-|..|.....    +....|+|++||.|++||+||.||+||+.++|+||.+|+|.+++++.|+.|..|++|++|+.
T Consensus         4 ei~~P~lg~~~~e----g~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_           4 DILVPDLPESVAD----ATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CEECCCCCSCCSC----EECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             EEECCCCCCCccE----EEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            3666655543221    13456899999999999999999999999999999999999999999999999999999874

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.78  E-value=1.7e-05  Score=63.61  Aligned_cols=58  Identities=19%  Similarity=0.419  Sum_probs=48.4

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEec---CCCCeec---CCC-eEEEEecCC
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLLF---DDGDAVG---FGD-PLIAVLPSF  283 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveilv---~dGd~Ve---~Gq-pL~~I~p~~  283 (287)
                      +.++|+.|++|+.++.||+.|...+|.||++|+|++++-   .+-+.++   ||+ +|++|++..
T Consensus        42 lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~l~~~P~lin~dpy~~gWl~~ik~~d  106 (127)
T d1onla_          42 LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD  106 (127)
T ss_dssp             CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred             CCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhhhhhCHHHhcCCCCCCCEEEEEEECC
Confidence            458999999999999999999999999999999999973   3334443   554 999998754

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.76  E-value=1.6e-05  Score=64.18  Aligned_cols=59  Identities=19%  Similarity=0.360  Sum_probs=49.5

Q ss_pred             cccCCCEEcCCCEEEEEEecCeeeeeecCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCCC
Q 023091          226 ICKEGDVIKEGQTIGYLDQFGTELPVKSDVAGEVLKLL---FDDGDAVG---FGD-PLIAVLPSFH  284 (287)
Q Consensus       226 ~V~vGd~Vk~GqvL~iIEamK~~~eV~Ap~sG~Vveil---v~dGd~Ve---~Gq-pL~~I~p~~~  284 (287)
                      +.++|+.|++|+.+|.||+.|...+|.+|++|+|++++   .++-+.++   ||+ +||+|++...
T Consensus        43 lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~l~~~P~llN~dpy~~gWl~~i~~~d~  108 (131)
T d1hpca_          43 LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSP  108 (131)
T ss_dssp             CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSG
T ss_pred             CCCCCccccCCCceEEEEeecccccccCCcchhheeehhhhhhCHHHHhCCCCCCcEEEEEEECCH
Confidence            34899999999999999999999999999999999997   33444443   666 9999997653

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.96  E-value=0.00044  Score=50.39  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=31.8

Q ss_pred             eeeecCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 023091          249 LPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVLPS  282 (287)
Q Consensus       249 ~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~p~  282 (287)
                      ..|+||..|+|.+++++.||.|..||+|+.++..
T Consensus         9 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~   42 (77)
T d1dcza_           9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM   42 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred             CEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEcc
Confidence            4799999999999999999999999999999864

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.58  E-value=0.00051  Score=56.79  Aligned_cols=65  Identities=23%  Similarity=0.254  Sum_probs=54.2

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecCe----------------------------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFGT----------------------------------  247 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK~----------------------------------  247 (287)
                      ..|.|+..|.+...          +|++||.|++||+|+.|+....                                  
T Consensus        16 ~~V~s~v~G~V~~v----------~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~   85 (237)
T d1vf7a_          16 AEVRPQVNGIILKR----------LFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQ   85 (237)
T ss_dssp             EEECCSSCEEEEEC----------CSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred             EEEEeecCEEEEEE----------ECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccch
Confidence            57999999999875          8999999999999999962111                                  


Q ss_pred             -----------------------eeeeecCCCeEEEEEecCCCCeecCCCeE
Q 023091          248 -----------------------ELPVKSDVAGEVLKLLFDDGDAVGFGDPL  276 (287)
Q Consensus       248 -----------------------~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL  276 (287)
                                             ...|.||++|+|.++.+..|+.+..|..+
T Consensus        86 ~~~~~~~~~~a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~  137 (237)
T d1vf7a_          86 YADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQAN  137 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSS
T ss_pred             hhhhhhhcchhHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCcce
Confidence                                   01299999999999999999999988744

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.00  E-value=0.0042  Score=45.12  Aligned_cols=35  Identities=34%  Similarity=0.377  Sum_probs=31.5

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEec
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQF  245 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEam  245 (287)
                      ...|+||..|++...          ++++||.|+.||+||.||..
T Consensus        41 ~~~i~a~~~G~v~~i----------~v~~G~~V~~G~~l~~ie~~   75 (79)
T d1iyua_          41 SMEVPSPKAGVVKSV----------SVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEEECSSSSEEEEE----------SCCTTCEEETTSEEEEEECC
T ss_pred             EEEEEeccccEEEEE----------eeCCCCEECCCCEEEEEecC
Confidence            468999999999875          89999999999999999853

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0053  Score=44.97  Aligned_cols=33  Identities=6%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEE
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLD  243 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIE  243 (287)
                      ...|+||..|++.+.          +|+.||.|+.||+|+.||
T Consensus        48 ~~~i~a~~~G~v~~i----------~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          48 MNQIEADKSGTVKAI----------LVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEEECSSCEEEEEE----------CSCTTCEECTTCEEEEEC
T ss_pred             cEEEEcCCCeEEEEE----------EeCCCCEECCCCEEEEEC
Confidence            468999999999876          899999999999999986

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.012  Score=47.78  Aligned_cols=65  Identities=22%  Similarity=0.272  Sum_probs=50.0

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcC----CCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKE----GQTIGYLDQFGTELPVKSDVAGEVL-----------------  260 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~----GqvL~iIEamK~~~eV~Ap~sG~Vv-----------------  260 (287)
                      ..|.||+.|++..-           -++-|.|=.    |+-++++=..   ..|.||++|+|.                 
T Consensus         2 v~i~aP~~G~vi~L-----------~~v~D~vFs~~~mG~GvAI~P~~---~~v~AP~dG~V~~v~~T~HAigi~t~~G~   67 (150)
T d2f3ga_           2 IEIIAPLSGEIVNI-----------EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGV   67 (150)
T ss_dssp             EEEECSSSEEEECG-----------GGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEEecCceEEEc-----------ccCCChHHhcCCccCeEEEEeCC---CeEEeecCEEEEEECCCCCEEEEEeCCce
Confidence            46999999999864           344444333    7778876544   479999999988                 


Q ss_pred             ------------------EEecCCCCeecCCCeEEEEe
Q 023091          261 ------------------KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 ------------------eilv~dGd~Ve~GqpL~~I~  280 (287)
                                        +.+++.||.|..||+|+++.
T Consensus        68 eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  105 (150)
T d2f3ga_          68 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  105 (150)
T ss_dssp             EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEEEEccchhhcCCcceEEEecCCCEECCCCEEEEEc
Confidence                              56788899999999999875

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=95.55  E-value=0.021  Score=46.60  Aligned_cols=65  Identities=18%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEE----cCCCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVI----KEGQTIGYLDQFGTELPVKSDVAGEVL-----------------  260 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~V----k~GqvL~iIEamK~~~eV~Ap~sG~Vv-----------------  260 (287)
                      ..|.||+.|++..-           -++-|.|    --|+-+++.=..   ..|.||++|+|.                 
T Consensus         8 ~~i~aP~~G~vi~l-----------~~v~D~vFs~k~~G~G~aI~P~~---~~v~AP~dG~I~~i~~T~HAigi~t~~G~   73 (154)
T d2gpra_           8 LKVLAPCDGTIITL-----------DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGV   73 (154)
T ss_dssp             EEEECSSSEEEECG-----------GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSC
T ss_pred             eEEEecCCceEEEc-----------ccCCChhhccCCCcCeEEEEecC---CEEEEecCeEEEEECCCCcEEEEEeCCCC
Confidence            57999999999864           2333333    247778876543   568999999888                 


Q ss_pred             ------------------EEecCCCCeecCCCeEEEEe
Q 023091          261 ------------------KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 ------------------eilv~dGd~Ve~GqpL~~I~  280 (287)
                                        +.+++.||.|..||+|+++.
T Consensus        74 eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  111 (154)
T d2gpra_          74 EILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             EEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEEEEcccccccCCceeEEEecCCCEEcCCCEEEEEc
Confidence                              67789999999999999885

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0072  Score=43.93  Aligned_cols=36  Identities=25%  Similarity=0.176  Sum_probs=29.6

Q ss_pred             eeeeecCC----CeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          248 ELPVKSDV----AGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       248 ~~eV~Ap~----sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      ..+|+.|.    +|+|++++++.||.|..||+|+.|+...
T Consensus         2 ~~ei~~P~lG~~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K   41 (80)
T d1qjoa_           2 VKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDK   41 (80)
T ss_dssp             EEEECCCCCSSSCEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred             CeEEECCCCCCCeEEEEEEEeCCCCEECCCCEEEEEEcCc
Confidence            44555553    5799999999999999999999998653

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.35  E-value=0.0099  Score=43.21  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ  244 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa  244 (287)
                      ...|.||..|++.+.          ++++||.|+.||+|++|+.
T Consensus        44 ~~ei~a~~~G~v~~i----------~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          44 VMEVLAEADGVIAEI----------VKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEEECSSCEEEEEE----------SSCTTCEECTTCEEEEECC
T ss_pred             EEEEEeceeEEEEEE----------EcCCCCEECCCCEEEEEeC
Confidence            468999999999875          8999999999999999974

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0084  Score=44.47  Aligned_cols=36  Identities=14%  Similarity=0.127  Sum_probs=32.3

Q ss_pred             ceEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEecC
Q 023091          201 YVLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQFG  246 (287)
Q Consensus       201 ~~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEamK  246 (287)
                      ...|.||..|++.+.          ++++||.|+.|++||.|+...
T Consensus        47 ~~~v~A~~~G~I~~i----------~v~~G~~v~~G~~l~~i~~~~   82 (87)
T d1k8ma_          47 SVTITSRYDGVIKKL----------YYNLDDIAYVGKPLVDIETEA   82 (87)
T ss_dssp             EEECCCSSCEEEEEE----------CCCSSCEECTTSEEEEEECSC
T ss_pred             eEEEEeCCCEEEEEE----------EeCCCCEECCCCEEEEEEcCC
Confidence            368999999999975          899999999999999998654

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=95.32  E-value=0.019  Score=47.04  Aligned_cols=65  Identities=26%  Similarity=0.309  Sum_probs=50.8

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEE----cCCCEEEEEEecCeeeeeecCCCeEEE-----------------
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVI----KEGQTIGYLDQFGTELPVKSDVAGEVL-----------------  260 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~V----k~GqvL~iIEamK~~~eV~Ap~sG~Vv-----------------  260 (287)
                      ..|.||+.|++..-           -++.|.|    --|+-++++=..   ..|.||++|+|.                 
T Consensus        10 ~~i~aP~~G~vi~L-----------~~V~D~vFs~~~~G~G~aI~P~~---~~v~AP~~G~I~~i~~T~HAigi~t~~G~   75 (158)
T d1gpra_          10 EVFVSPITGEIHPI-----------TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGR   75 (158)
T ss_dssp             BCCBCSSSEEEEEG-----------GGSSSHHHHTTSSCEEEEEEESS---CEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEecCCcEEEEh-----------hhCCChHhccCCccceEEEEEcC---CEEEEeeCeEEEEEcCCCCEEEEEeCCCe
Confidence            35899999999864           3455544    237888876543   569999999987                 


Q ss_pred             ------------------EEecCCCCeecCCCeEEEEe
Q 023091          261 ------------------KLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       261 ------------------eilv~dGd~Ve~GqpL~~I~  280 (287)
                                        +.+++.||.|..||+|+++.
T Consensus        76 evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D  113 (158)
T d1gpra_          76 EILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  113 (158)
T ss_dssp             EEEEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEEEEeecccccCCcceEEEEcCCCEEcCCCEEEEeC
Confidence                              67799999999999999976

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.028  Score=42.64  Aligned_cols=29  Identities=21%  Similarity=0.210  Sum_probs=26.5

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          255 VAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      ..|+|++++++.||.|..||+|+.|+...
T Consensus        18 ~eg~i~~w~v~~Gd~V~~gd~l~~vETdK   46 (102)
T d1y8ob1          18 TMGTVQRWEKKVGEKLSEGDLLAEIETDK   46 (102)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             cEEEEEEEEeCCCCEEecCccEEEEEcCc
Confidence            57999999999999999999999998653

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.87  E-value=0.018  Score=41.87  Aligned_cols=29  Identities=31%  Similarity=0.377  Sum_probs=26.2

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          255 VAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      ..|+|.+++++.||.|+.||+|+.|+..+
T Consensus        14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K   42 (80)
T d1laba_          14 HEGEIVKWFVKPGDEVNEDDVLCEVQNDK   42 (80)
T ss_dssp             CSEEEEECCCSSCCEECSSCCCEEEECSS
T ss_pred             eeEEEEEEEeCCCCEEeeCcCEEEEEccc
Confidence            46999999999999999999999998643

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.0056  Score=44.79  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             eEEeCCcceEEEeccccCCCCCCCcccCCCEEcCCCEEEEEEe
Q 023091          202 VLVFSPTVGSFRRNRTVKGKKQSPICKEGDVIKEGQTIGYLDQ  244 (287)
Q Consensus       202 ~~V~AP~vGtf~~~psp~~p~~~p~V~vGd~Vk~GqvL~iIEa  244 (287)
                      ..|.||..|++.+.          ++++||.|+.||+||+||.
T Consensus        46 ~ev~a~~~G~l~~i----------~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          46 LEVPASADGILDAV----------LEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCBCCSBCCCCBC----------TTCTTCEECSSSEEEBCCC
T ss_pred             EEEeccCCEEEEEE----------EeCCCCEECCCCEEEEEeC
Confidence            57999999999764          8999999999999999873

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.12  E-value=0.033  Score=40.34  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=26.2

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCC
Q 023091          255 VAGEVLKLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       255 ~sG~Vveilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      .+|+|++++++.||.|..||+|+.|+...
T Consensus        14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K   42 (81)
T d1gjxa_          14 ENVDIIAVEVNVGDTIAVDDTLITLETDK   42 (81)
T ss_dssp             SSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred             cEEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            56899999999999999999999998643

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=89.70  E-value=0.073  Score=43.22  Aligned_cols=57  Identities=11%  Similarity=0.101  Sum_probs=35.6

Q ss_pred             CCCCCcccCCCEEcCCCEEEEEEecC---------eeeeeecCCCeEEEEEecCCCCeecCCCeEEEEe
Q 023091          221 KKQSPICKEGDVIKEGQTIGYLDQFG---------TELPVKSDVAGEVLKLLFDDGDAVGFGDPLIAVL  280 (287)
Q Consensus       221 p~~~p~V~vGd~Vk~GqvL~iIEamK---------~~~eV~Ap~sG~Vveilv~dGd~Ve~GqpL~~I~  280 (287)
                      ..-..+|++||+|++||.|+.+.-..         ++.-+......   .+.......|..|++|+.++
T Consensus        89 ~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~V~~Gd~i~~ik  154 (154)
T d2gpra_          89 NGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGEVKQGDVVAILK  154 (154)
T ss_dssp             CSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEEECTTCEEEEEC
T ss_pred             ceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCcCcCCCEEEEeC
Confidence            33456899999999999999987322         11222222111   12223334689999999874

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=89.68  E-value=0.083  Score=43.04  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=35.3

Q ss_pred             CCCCCCcccCCCEEcCCCEEEEEEecC-------eeee--eecCCCeEEEEEecCCCCeecCC-CeEEEEe
Q 023091          220 GKKQSPICKEGDVIKEGQTIGYLDQFG-------TELP--VKSDVAGEVLKLLFDDGDAVGFG-DPLIAVL  280 (287)
Q Consensus       220 ~p~~~p~V~vGd~Vk~GqvL~iIEamK-------~~~e--V~Ap~sG~Vveilv~dGd~Ve~G-qpL~~I~  280 (287)
                      |..-..+|+.||+|++||.|+.+.-..       +..+  +....+..  .+.+.....|..| ++|+.|+
T Consensus        90 G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~--~i~~~~~~~v~~g~~~i~~v~  158 (158)
T d1gpra_          90 GEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGE--TVSIKASGSVNREQEDIVKIE  158 (158)
T ss_dssp             TTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBCCEEEEESSCCTTC--CEEECCCSEECTTCBCCEEEC
T ss_pred             CcceEEEEcCCCEEcCCCEEEEeCHHHHHhhCCCCceEEEEEeccccc--eEEEecCCcEEcCCceEEEEC
Confidence            344567899999999999999987321       2222  22222222  2333444455555 5788774

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.14  Score=41.37  Aligned_cols=59  Identities=29%  Similarity=0.348  Sum_probs=37.6

Q ss_pred             CCCCCcccCCCEEcCCCEEEEEEecC-------eeeeeecCCCeEEEEEecCCCCeecCCC-eEEEEe
Q 023091          221 KKQSPICKEGDVIKEGQTIGYLDQFG-------TELPVKSDVAGEVLKLLFDDGDAVGFGD-PLIAVL  280 (287)
Q Consensus       221 p~~~p~V~vGd~Vk~GqvL~iIEamK-------~~~eV~Ap~sG~Vveilv~dGd~Ve~Gq-pL~~I~  280 (287)
                      ..-..+|++||+|++||.|+.+.-..       +..+|--.-...+..+....| .|..|+ +|+.++
T Consensus        83 ~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g-~v~~g~~~i~~i~  149 (150)
T d2f3ga_          83 EGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTVGETPVIRIK  149 (150)
T ss_dssp             TTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGGGCSEEEECCS-EECTTTSEEEEEE
T ss_pred             cceEEEecCCCEECCCCEEEEEcHHHHHhcCCCCeeEEEEECcHhcceeeecCC-cEeeCCcEEEEEE
Confidence            44557899999999999999987322       122222222223334455566 577786 798875

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.01  E-value=1.5  Score=32.57  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=17.2

Q ss_pred             EEecCCCCeecCCCeEEEEecCC
Q 023091          261 KLLFDDGDAVGFGDPLIAVLPSF  283 (287)
Q Consensus       261 eilv~dGd~Ve~GqpL~~I~p~~  283 (287)
                      .++++-||.|+.|++|++|...+
T Consensus        49 ~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          49 VLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             EESCCTTCEECTTCEEEEEEESS
T ss_pred             EEeccCCCEEcCCCeEEEEEcCC
Confidence            34567788888888888887543