Citrus Sinensis ID: 023102

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDPLDAL
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccc
cccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEEEEEEHcccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHEEEccccccEEEEEcHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHcccccccccHHHccc
masmdpnlntnidelvsvqsppsekpklclvwnehyppgfLRKVIAEIIATYLLVFVTCGSAalsaydehrvSKLGASVAGGLIVTVMIYAVGhisgahmnPAVTLAFAAVrhfpwkqvPIYAAAQLTGAVSASLTLRVLLHpikhigttspsgsdLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVlagpvsggsmnpartvgpAIASSFYKGIWVYLVGpvtgtfmgawsynmiretdkpahaispgslsFKLRRLKsneqahnndpldal
masmdpnlNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHigttspsgsdlQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRlksneqahnndpldal
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDPLDAL
**************************KLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRE***********************************
*******************************WNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRE***********************************
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDPLDAL
******************QSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAI***************************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDPLDAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
Q19KC1295 Aquaporin NIP2-1 OS=Zea m N/A no 0.961 0.935 0.586 6e-93
Q6Z2T3298 Aquaporin NIP2-1 OS=Oryza yes no 0.867 0.835 0.618 2e-90
Q9ATN2294 Aquaporin NIP2-2 OS=Zea m N/A no 0.954 0.931 0.589 1e-89
Q67WJ8298 Aquaporin NIP2-2 OS=Oryza no no 0.951 0.916 0.585 2e-87
Q9AT74301 Aquaporin NIP2-3 OS=Zea m N/A no 0.972 0.926 0.568 5e-87
Q8W036283 Probable aquaporin NIP4-2 yes no 0.829 0.840 0.514 3e-63
Q40746284 Aquaporin NIP1-1 OS=Oryza no no 0.822 0.830 0.516 4e-63
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi no no 0.825 0.806 0.465 3e-61
Q8VZW1296 Aquaporin NIP1-1 OS=Arabi no no 0.815 0.790 0.495 4e-61
P49173270 Probable aquaporin NIP-ty N/A no 0.787 0.837 0.508 4e-59
>sp|Q19KC1|NIP21_MAIZE Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  340 bits (873), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 166/283 (58%), Positives = 215/283 (75%), Gaps = 7/283 (2%)

Query: 7   NLNTNIDELVSVQS---PPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAA 63
           N N  I ++ + Q+   PP+   +      + +PP  L+KV++E+++T+LLVFVTCG+A 
Sbjct: 12  NFNNEIHDIGTAQNSSMPPTYYDRSL---ADIFPPHLLKKVVSEVVSTFLLVFVTCGAAG 68

Query: 64  LSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYA 123
           +   D+ R+S+LG SVAGGLIVTVMIYAVGHISGAHMNPAVTLAFA  RHFPW QVP Y 
Sbjct: 69  IYGSDKDRISQLGQSVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYW 128

Query: 124 AAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKA 183
           AAQ TG++ AS  L+ +LHPI  +GTT+P+G    +L++EI+VTF+MMFVT AVATDT+A
Sbjct: 129 AAQFTGSICASFVLKAVLHPIAVLGTTTPTGPHWHSLVIEIIVTFNMMFVTLAVATDTRA 188

Query: 184 IGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMG 243
           +GELAG+AVGSAVCITS+ AG VSGGSMNPART+GPA+AS+ Y G+W+Y +GPV GT  G
Sbjct: 189 VGELAGLAVGSAVCITSIFAGAVSGGSMNPARTLGPALASNLYTGLWIYFLGPVLGTLSG 248

Query: 244 AWSYNMIRETDKPAHA-ISPGSLSFKLRRLKSNEQAHNNDPLD 285
           AW+Y  IR  + P+H  +S    SFKLRRL+S   A ++D LD
Sbjct: 249 AWTYTYIRFEEAPSHKDMSQKLSSFKLRRLQSQSVAVDDDELD 291
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Zea mays (taxid: 4577)
>sp|Q6Z2T3|NIP21_ORYSJ Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATN2|NIP22_MAIZE Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q67WJ8|NIP22_ORYSJ Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT74|NIP23_MAIZE Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q8VZW1|NIP11_ARATH Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|P49173|NIP1_NICAL Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
255587854297 Silicon transporter, putative [Ricinus c 0.958 0.925 0.780 1e-123
359489000294 PREDICTED: aquaporin NIP2-1-like [Vitis 0.993 0.969 0.753 1e-122
33468424288 Nod26-like protein [Cucurbita pepo] 0.958 0.954 0.721 1e-116
327187680288 silicon transporter 1 [Cucurbita moschat 0.958 0.954 0.721 1e-116
224141393278 aquaporin, MIP family, NIP subfamily [Po 0.965 0.996 0.722 1e-116
327187682288 silicon transporter 1 [Cucurbita moschat 0.958 0.954 0.717 1e-115
449459480288 PREDICTED: aquaporin NIP2-1-like [Cucumi 0.944 0.940 0.726 1e-115
449459478261 PREDICTED: aquaporin NIP2-1-like [Cucumi 0.801 0.881 0.721 3e-94
255688227261 Si transport-like protein 2 [Cucumis sat 0.801 0.881 0.717 1e-93
358442125209 Lsi-1 [Solanum lycopersicum] 0.714 0.980 0.815 5e-93
>gi|255587854|ref|XP_002534417.1| Silicon transporter, putative [Ricinus communis] gi|223525328|gb|EEF27965.1| Silicon transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/278 (78%), Positives = 246/278 (88%), Gaps = 3/278 (1%)

Query: 13  DELVSVQSPPSEKPKLCLV--WNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEH 70
           + LVSV++P SEK  LCLV  +   YPP F RKV+AE+IATYLLVFVTCG+AA+S+ D+ 
Sbjct: 20  EHLVSVENPKSEKSFLCLVQSFQNQYPPRFPRKVVAEVIATYLLVFVTCGAAAISSADDK 79

Query: 71  RVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGA 130
           R+SKLGAS+AGGLIVTVMIYAVGH+SGAHMNPAVT AFAAVRHFPWK+VP YAAAQLTGA
Sbjct: 80  RISKLGASLAGGLIVTVMIYAVGHVSGAHMNPAVTTAFAAVRHFPWKEVPYYAAAQLTGA 139

Query: 131 VSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGI 190
           +SAS TL+VLLHP+KHIGTTSPSGSD QAL+MEIVVTF MMFVTSAVATDTKAIGELAGI
Sbjct: 140 ISASFTLKVLLHPVKHIGTTSPSGSDFQALVMEIVVTFCMMFVTSAVATDTKAIGELAGI 199

Query: 191 AVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMI 250
           AVGSAVCITS+LAGP+SGGSMNPART+GPAIAS++YKGIWVY+VGPV GT +G+WSYN I
Sbjct: 200 AVGSAVCITSILAGPISGGSMNPARTLGPAIASAYYKGIWVYIVGPVVGTLLGSWSYNFI 259

Query: 251 RETDKPAHAISPGSLSFKLRRLKS-NEQAHNNDPLDAL 287
           R TD+P  AISP S S KLRR++S NEQ  N DP DAL
Sbjct: 260 RVTDQPLQAISPRSFSAKLRRIRSTNEQPTNKDPFDAL 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359489000|ref|XP_002278054.2| PREDICTED: aquaporin NIP2-1-like [Vitis vinifera] gi|296082910|emb|CBI22211.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|33468424|emb|CAD67694.1| Nod26-like protein [Cucurbita pepo] Back     alignment and taxonomy information
>gi|327187680|dbj|BAK09175.1| silicon transporter 1 [Cucurbita moschata] Back     alignment and taxonomy information
>gi|224141393|ref|XP_002324057.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222867059|gb|EEF04190.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|327187682|dbj|BAK09176.1| silicon transporter 1 [Cucurbita moschata] Back     alignment and taxonomy information
>gi|449459480|ref|XP_004147474.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] gi|449524302|ref|XP_004169162.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] gi|255688225|gb|ACU29603.1| Si transport-like protein 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449459478|ref|XP_004147473.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] gi|449517689|ref|XP_004165877.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255688227|gb|ACU29604.1| Si transport-like protein 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|358442125|gb|AEU11367.1| Lsi-1 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.881 0.848 0.614 2.4e-83
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.829 0.840 0.514 8.1e-60
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.804 0.785 0.481 1.5e-58
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.815 0.790 0.495 2.5e-58
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.825 0.837 0.495 1.4e-57
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.749 0.704 0.451 9.2e-52
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.738 0.697 0.481 9.2e-52
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.749 0.665 0.44 2.2e-50
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.728 0.725 0.440 3.8e-46
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.829 0.865 0.371 1.4e-41
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 156/254 (61%), Positives = 200/254 (78%)

Query:    34 EHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVG 93
             + +PP  L+KV++E++AT+LLVF+TCG+A +S  D  R+S+LG S+AGGLIVTVMIYAVG
Sbjct:    41 DFFPPHLLKKVVSEVVATFLLVFMTCGAAGISGSDLSRISQLGQSIAGGLIVTVMIYAVG 100

Query:    94 HISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPS 153
             HISGAHMNPAVTLAFA  RHFPW QVP Y AAQ TGA+ AS  L+ ++HP+  IGTT+P 
Sbjct:   101 HISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVIHPVDVIGTTTPV 160

Query:   154 GSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNP 213
             G    +L++E++VTF+MMFVT AVATDT+A+GELAG+AVGSAVCITS+ AG +SGGSMNP
Sbjct:   161 GPHWHSLVVEVIVTFNMMFVTLAVATDTRAVGELAGLAVGSAVCITSIFAGAISGGSMNP 220

Query:   214 ARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLK 273
             ART+GPA+AS+ + G+W+Y +GPV GT  GAW+Y  IR  D P    S    SFKLRRL+
Sbjct:   221 ARTLGPALASNKFDGLWIYFLGPVMGTLSGAWTYTFIRFEDTPKEGSSQKLSSFKLRRLR 280

Query:   274 SNEQAHNNDPLDAL 287
             S +Q+   D +D +
Sbjct:   281 S-QQSIAADDVDEM 293
GO:0005215 "transporter activity" evidence=ISS
GO:0015115 "silicate transmembrane transporter activity" evidence=IDA
GO:0015708 "silicate transport" evidence=IMP
GO:0016020 "membrane" evidence=IDA
GO:0048226 "Casparian strip" evidence=IDA
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z2T3NIP21_ORYSJNo assigned EC number0.61840.86750.8355yesno
Q9ATN2NIP22_MAIZENo assigned EC number0.58920.95470.9319N/Ano
Q9ATN4NIP11_MAIZENo assigned EC number0.52080.82920.8439N/Ano
Q19KC1NIP21_MAIZENo assigned EC number0.58650.96160.9355N/Ano
Q9AT74NIP23_MAIZENo assigned EC number0.56890.97210.9269N/Ano
Q8W036NIP42_ARATHNo assigned EC number0.51440.82920.8409yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00170379
aquaporin, MIP family, NIP subfamily (278 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_IX0381
aquaporin, MIP family, PIP subfamily (306 aa)
  •     0.495

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-81
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-78
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 5e-72
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-56
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 6e-55
pfam00230218 pfam00230, MIP, Major intrinsic protein 9e-53
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 8e-49
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-47
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 5e-38
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-27
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 1e-26
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 7e-24
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-18
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-05
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 4e-05
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 5e-04
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information 
 Score =  246 bits (630), Expect = 2e-81
 Identities = 126/241 (52%), Positives = 164/241 (68%), Gaps = 8/241 (3%)

Query: 42  RKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMN 101
           +K+IAE+I TY ++F  CG   ++      ++  G  V  GLIV VMIY+ GHISGAH N
Sbjct: 43  QKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFN 102

Query: 102 PAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH--PIKHIGTTSPSGSDLQA 159
           PAVT+ FA  R FPW QVP+Y  AQLTG++ ASLTLR++ +  P    GTT P+ S  QA
Sbjct: 103 PAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTT-PTDSSGQA 161

Query: 160 LIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGP 219
           L+ EI+++F +MFV S VATD++A+GELAGIAVG  + +   +AGP+SG SMNPAR++GP
Sbjct: 162 LVAEIIISFLLMFVISGVATDSRAVGELAGIAVGMTIILNVFVAGPISGASMNPARSLGP 221

Query: 220 AIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAH 279
           AI    YKGIWVY+VGP  G   G + YN+IR TDKP   ++  S SF    L+S  Q H
Sbjct: 222 AIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFTDKPLRELTK-SASF----LRSVSQKH 276

Query: 280 N 280
           N
Sbjct: 277 N 277

Length = 283
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.6
PLN00026298 aquaporin NIP; Provisional 99.58
PLN00184 296 aquaporin NIP1; Provisional 99.57
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.57
PLN00183274 putative aquaporin NIP7; Provisional 99.54
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.5
PLN00166250 aquaporin TIP2; Provisional 99.49
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.48
PLN00167256 aquaporin TIP5; Provisional 99.47
PLN00027252 aquaporin TIP; Provisional 99.42
PTZ00016 294 aquaglyceroporin; Provisional 99.41
PRK05420231 aquaporin Z; Provisional 99.34
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.28
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.23
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.19
COG2116265 FocA Formate/nitrite family of transporters [Inorg 92.96
PRK11562268 nitrite transporter NirC; Provisional 90.31
PRK09713282 focB putative formate transporter; Provisional 87.71
PRK10805285 formate transporter; Provisional 85.9
PF01226250 Form_Nir_trans: Formate/nitrite transporter; Inter 83.99
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-51  Score=372.86  Aligned_cols=227  Identities=49%  Similarity=0.854  Sum_probs=197.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhHHHHHHHHHHHHHHHHHhcccCCccchHHHHHHHHhhCC
Q 023102           35 HYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHF  114 (287)
Q Consensus        35 ~~~~~~~~~~~~Ef~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~  114 (287)
                      ..+.+++|++++||+|||+|+|+++++.......+...++..++++||+++++.+++++++||+|+|||||+++++.|++
T Consensus        48 ~~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~  127 (296)
T PLN00184         48 SVSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRF  127 (296)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCC
Confidence            35667899999999999999999998876443222223566789999999999999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhhHHHHHHHHHHHHhcCcc--------cccccCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q 023102          115 PWKQVPIYAAAQLTGAVSASLTLRVLLHPIK--------HIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGE  186 (287)
Q Consensus       115 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~--------~~~~~~~~~s~~~~~~~E~~~Tf~l~~~~~~~~~~~~~~~~  186 (287)
                      +|.++++|+++|++|+++|+++++.+++...        ...++.|..+..++++.|+++||+|+++++.+..+++..+.
T Consensus       128 ~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~  207 (296)
T PLN00184        128 PLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGE  207 (296)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCc
Confidence            9999999999999999999999999885211        12234566688999999999999999999987666655456


Q ss_pred             hhHHHHHHHHHHHHHhccCCCccccchhhhHHHHHhhcCCCceeeeeehhhHHHHHHHHHHHHHhcCCCCCCCCC
Q 023102          187 LAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAIS  261 (287)
Q Consensus       187 ~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~~g~a~~~~~~~~~wvy~~~P~lGa~la~~l~~~~~~~~~~~~~~~  261 (287)
                      ..++.||+++.+.+++.+++||++|||||+|||+++.+.|+++||||+||++|+++|+++|+++..++++.++..
T Consensus       208 ~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~  282 (296)
T PLN00184        208 LAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREIT  282 (296)
T ss_pred             chHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhc
Confidence            789999999999999999999999999999999999999999999999999999999999999998777766554

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-24
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 5e-24
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 1e-22
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-22
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-22
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 3e-22
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 4e-22
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 6e-22
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 6e-22
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 7e-22
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 8e-22
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 2e-21
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 3e-21
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-20
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 1e-20
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 1e-20
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 2e-20
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 4e-19
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 4e-19
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 6e-19
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 8e-18
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 7e-15
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 8e-15
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-14
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-14
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-14
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-14
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-14
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 2e-10
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 5e-08
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 28/239 (11%)
Query: 42  RKVIAEIIATYLLVFVTCGSAALSAYDEHRVSK-----------------LGASVAGGLI 84
           ++  AE++ T++LVF   G+A ++    +   K                     +A  L 
Sbjct: 7   KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 85  VTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP- 143
           +  +IY++G ISGAH+NPAVT+A  ++  FP ++V  Y  AQ  GA   SL     + P 
Sbjct: 67  IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPA 126
Query: 144 ---IKHIGTTSP-SGSDL-QALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
              +  +G T+P  G    QA++ E + TF +M V   VA D +A    AG+ +G  V  
Sbjct: 127 AATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGG 186
Query: 199 TSVLAGPVSGGSMNPARTVGPAIASSFYK-GIW----VYLVGPVTGTFMGAWSYNMIRE 252
                G ++G S+NPART GP +  S     +W    +Y++GP+ G    AW YN + +
Sbjct: 187 IITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAK 245
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-76
2o9g_A234 Aquaporin Z; integral membrane protein, structural 7e-76
2o9g_A234 Aquaporin Z; integral membrane protein, structural 3e-12
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 7e-76
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 2e-75
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-74
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 1e-72
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-67
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 6e-12
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-64
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-64
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-61
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 9e-61
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 3e-55
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 8e-11
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 6e-51
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  236 bits (603), Expect = 1e-76
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 2   ASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGS 61
            +          +L            + + +   +   F + V AE +A  + V ++ GS
Sbjct: 13  MASMTGGQQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGS 72

Query: 62  A--ALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQV 119
                 + +   V  +  S+  GL +  M+   GHISG H+NPAVT+A    R     + 
Sbjct: 73  TINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKS 132

Query: 120 PIYAAAQLTGAVSASLTLRVLLHP--IKHIGTTSPSG--SDLQALIMEIVVTFSMMFVTS 175
             Y  AQ  GA+  +  L ++  P  +  +G T+  G  +    L++E+++TF ++F   
Sbjct: 133 VFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIF 192

Query: 176 AVATDTK-AIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLV 234
           A   D +  +     +A+G +V I  + A   +G SMNPAR+ GPA+    ++  W+Y V
Sbjct: 193 ASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWV 252

Query: 235 GPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDP 283
           GP+ G  +    Y  +   D         + S   ++ K +     ++ 
Sbjct: 253 GPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNR 301
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.59
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.42
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.4
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.4
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.39
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.39
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.39
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.39
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.38
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.37
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.32
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.29
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.29
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 88.75
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=4.5e-53  Score=386.53  Aligned_cols=256  Identities=26%  Similarity=0.422  Sum_probs=209.5

Q ss_pred             ccCCCChhHHHHHHHHHHHHHHHHHHHHhHhhcccc--cccccchhHHHHHHHHHHHHHHHHHhcccCCccchHHHHHHH
Q 023102           32 WNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAY--DEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFA  109 (287)
Q Consensus        32 ~~~~~~~~~~~~~~~Ef~gTf~lv~~~~~~~~~~~~--~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~  109 (287)
                      .++.++.+++|++++||+|||+|+|+++++++....  .....+++.+++++|+++++.+++++++||||+|||||++++
T Consensus        43 ~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~  122 (340)
T 3iyz_A           43 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV  122 (340)
T ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHH
Confidence            355677899999999999999999999998774321  122356778999999999999999999999999999999999


Q ss_pred             HhhCCCCCcchhhhhhhhhHHHHHHHHHHHHhcCcc--cccccC--CCCChHHHHHHHHHHHHHHHHHHHhhccCCCc-c
Q 023102          110 AVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIK--HIGTTS--PSGSDLQALIMEIVVTFSMMFVTSAVATDTKA-I  184 (287)
Q Consensus       110 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~--~~~~~~--~~~s~~~~~~~E~~~Tf~l~~~~~~~~~~~~~-~  184 (287)
                      +.|+++|.+++.|+++|++||++|+++++.++++..  ..+.+.  +..+..++++.|+++||+|+++++.+..+++. .
T Consensus       123 l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~  202 (340)
T 3iyz_A          123 CTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDV  202 (340)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCc
Confidence            999999999999999999999999999999886432  223332  34578899999999999999999987544433 2


Q ss_pred             cchhHHHHHHHHHHHHHhccCCCccccchhhhHHHHHhhcCCCceeeeeehhhHHHHHHHHHHHHHhcCCCCCCCC----
Q 023102          185 GELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAI----  260 (287)
Q Consensus       185 ~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~~g~a~~~~~~~~~wvy~~~P~lGa~la~~l~~~~~~~~~~~~~~----  260 (287)
                      ....|+.||+++.+.++.++++||++|||||+|||+++.++|.++||||+||++|+++|+++|++++.++.+.++.    
T Consensus       203 ~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~~~~~r~~~~  282 (340)
T 3iyz_A          203 TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEA  282 (340)
T ss_pred             ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCChhhhHHHHHh
Confidence            4578999999998888888899999999999999999999999999999999999999999999998765442221    


Q ss_pred             CCCCcchhhhhccCccccCCCCCCCCC
Q 023102          261 SPGSLSFKLRRLKSNEQAHNNDPLDAL  287 (287)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~e~~~~  287 (287)
                      .++..+..+.++++.++.+++.|.|||
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (340)
T 3iyz_A          283 FSKAAQQTKGSYMEVEDNRSQVETEDL  309 (340)
T ss_pred             hcCcccccccchhhhhcccccchhhhh
Confidence            122223334666666666666666654
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-42
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-04
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 9e-41
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 6e-06
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 4e-36
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 6e-06
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-35
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 9e-07
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  143 bits (362), Expect = 2e-42
 Identities = 70/223 (31%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 40  FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
           F R + AE  A+   VF   G++   A     +  L  ++A GL +  ++ AVGHISGAH
Sbjct: 4   FWRAICAEFFASLFYVFFGLGASLRWAPGP--LHVLQVALAFGLALATLVQAVGHISGAH 61

Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
           +NPAVT AF         +   Y  AQL GAV+ +  L  +  P       + T  P  S
Sbjct: 62  VNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 121

Query: 156 DLQALIMEIVVTFSMMFVTSAVATDTK-AIGELAGIAVGSAVCITSVLAGPVSGGSMNPA 214
             QA I+EI +T   +    A   + +        +AVG ++ +  +     +G  MNPA
Sbjct: 122 VGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPA 181

Query: 215 RTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPA 257
           R+  PAI +  +   WVY VGPV G  +G+  Y+ +      +
Sbjct: 182 RSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS 224
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.41
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.39
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.27
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.22
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-48  Score=340.54  Aligned_cols=219  Identities=32%  Similarity=0.461  Sum_probs=190.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhHHHHHHHHHHHHHHHHHhcccCCccchHHHHHHHHhhCCCC
Q 023102           37 PPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPW  116 (287)
Q Consensus        37 ~~~~~~~~~~Ef~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~  116 (287)
                      +.++||++++||+|||+++|+++++......+  ..+...+++++|+++++.+++++++||||+|||||+++++.|+++|
T Consensus         1 s~s~~r~~laEf~GT~~lvf~g~gs~~~~~~~--~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~   78 (234)
T d1ymga1           1 SASFWRAICAEFFASLFYVFFGLGASLRWAPG--PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSL   78 (234)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHCSCC-C--HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCCh
Confidence            35799999999999999999999987644332  3456778999999999999999999999999999999999999999


Q ss_pred             CcchhhhhhhhhHHHHHHHHHHHHhcCccc----ccccCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCcc-cchhHHH
Q 023102          117 KQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAI-GELAGIA  191 (287)
Q Consensus       117 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~E~~~Tf~l~~~~~~~~~~~~~~-~~~~~~~  191 (287)
                      ++.+.|+++|++||++|+++++.++++...    ...+.|..+..++++.|+++|++++++++....+++.. ....++.
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~~~l~  158 (234)
T d1ymga1          79 LRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALA  158 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCCHHHH
T ss_pred             hheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcceeEe
Confidence            999999999999999999999999875432    12234566889999999999999999999875444332 3467899


Q ss_pred             HHHHHHHHHHhccCCCccccchhhhHHHHHhhcCCCceeeeeehhhHHHHHHHHHHHHHhcCCCCC
Q 023102          192 VGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPA  257 (287)
Q Consensus       192 ig~~v~~~~~~~~~~sG~~lNPAr~~g~a~~~~~~~~~wvy~~~P~lGa~la~~l~~~~~~~~~~~  257 (287)
                      +|+++.+.....++.||+++||||+|||+++.++|+++|+||+||++|+++|+++|++++.++.++
T Consensus       159 ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~  224 (234)
T d1ymga1         159 VGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS  224 (234)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred             ehHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999998655443
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure