Citrus Sinensis ID: 023108

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSSSNI
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
ccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHccccccccc
makdievgregefhdkdyhdpppapligaeeltRWSFYRAIIAEFIATLLFLYITVLTVIghksqtdakhggdgcggvGILGIAWAFGGMIFVLVYCTagisgghinpaVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYtryggganeladgystgaglgaEIIGTFVLVYTVFsatdpkrkardphvpvlaplSIGFAVFMVHLAtipvtgtginparsfgpaviynkdkawddqwiFWVGPFIGAAIAALYHQFILRASASkalgsrrsssni
makdievgregefhdkdyhdpppAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSAtdpkrkardphVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRASaskalgsrrsssni
MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHggdgcggvgilgIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSSSNI
*************************LIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDP***ARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRA***************
************************PLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFIL*****************
MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRASAS************
***************KDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQT****GGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRASAS************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
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MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSSSNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
P43287285 Aquaporin PIP2-2 OS=Arabi yes no 0.993 1.0 0.822 1e-135
P43286287 Aquaporin PIP2-1 OS=Arabi no no 1.0 1.0 0.808 1e-134
Q9ATM6288 Aquaporin PIP2-4 OS=Zea m N/A no 0.989 0.986 0.820 1e-133
P30302285 Aquaporin PIP2-3 OS=Arabi yes no 0.993 1.0 0.804 1e-133
Q9FF53291 Probable aquaporin PIP2-4 no no 0.975 0.962 0.817 1e-132
Q9ATM4287 Aquaporin PIP2-7 OS=Zea m N/A no 0.993 0.993 0.794 1e-132
Q6K215288 Probable aquaporin PIP2-2 yes no 0.989 0.986 0.809 1e-132
Q9ATM7289 Aquaporin PIP2-3 OS=Zea m N/A no 0.989 0.982 0.813 1e-131
Q9XF58285 Aquaporin PIP2-5 OS=Zea m N/A no 0.986 0.992 0.795 1e-128
Q9SV31286 Probable aquaporin PIP2-5 no no 0.996 1.0 0.777 1e-128
>sp|P43287|PIP22_ARATH Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2 Back     alignment and function desciption
 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/287 (82%), Positives = 254/287 (88%), Gaps = 2/287 (0%)

Query: 1   MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
           MAKD+E G EG F  +DY DPPP P   A+ELT+WS YRA+IAEF+ATLLFLYITVLTVI
Sbjct: 1   MAKDVE-GPEG-FQTRDYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVI 58

Query: 61  GHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
           G+K Q+D K GG  CGGVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 59  GYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKV 118

Query: 121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
           SL+RAV+YMVAQCLGAICG G VKAFQ SYY RYGGGAN LADGY+TG GL AEIIGTFV
Sbjct: 119 SLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFV 178

Query: 181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
           LVYTVFSATDPKR ARD HVPVLAPL IGFAVFMVHLATIP+TGTGINPARSFG AVIYN
Sbjct: 179 LVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN 238

Query: 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSSSNI 287
           K K WDD WIFWVGPFIGAAIAA YHQF+LRAS SK+LGS RS++N+
Sbjct: 239 KSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAANV 285
Water channel required to facilitate the transport of water across cell membrane. Plays an predominant role in root water uptake process in conditions of reduced transpiration, and in osmotic fluid transport. Its function is impaired by Hg(2+). Inhibited by cytosolic acidosis which occurs during anoxia in roots.
Arabidopsis thaliana (taxid: 3702)
>sp|P43286|PIP21_ARATH Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM6|PIP24_MAIZE Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|P30302|PIP23_ARATH Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF53|PIP24_ARATH Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM7|PIP23_MAIZE Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9XF58|PIP25_MAIZE Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1 Back     alignment and function description
>sp|Q9SV31|PIP25_ARATH Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
255557012288 Aquaporin PIP2.2, putative [Ricinus comm 1.0 0.996 0.885 1e-146
255045893285 plasma membrane intrinsic protein PIP2.1 0.993 1.0 0.885 1e-143
224068717285 aquaporin, MIP family, PIP subfamily [Po 0.993 1.0 0.881 1e-143
118486007285 unknown [Populus trichocarpa] 0.993 1.0 0.881 1e-143
260408312288 plasma membrane intrinsic protein [Hevea 1.0 0.996 0.871 1e-142
28395420287 plasma intrinsic protein 2,2 [Juglans re 1.0 1.0 0.871 1e-142
28395418287 plasma intrinsic protein 2,1 [Juglans re 1.0 1.0 0.871 1e-142
57336898285 putative plasma membrane intrinsic prote 0.993 1.0 0.871 1e-141
3158476287 aquaporin 2 [Samanea saman] 1.0 1.0 0.846 1e-140
156754275287 putative aquaporin PIP2;3 [Phaseolus vul 1.0 1.0 0.857 1e-139
>gi|255557012|ref|XP_002519539.1| Aquaporin PIP2.2, putative [Ricinus communis] gi|223541402|gb|EEF42953.1| Aquaporin PIP2.2, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/288 (88%), Positives = 268/288 (93%), Gaps = 1/288 (0%)

Query: 1   MAKDIEVG-REGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTV 59
           M KD+EVG   GEFH KDYHDPPPAPLI AEELT+WSFYRAIIAEFIATLLFLYITVLTV
Sbjct: 1   MGKDVEVGGHGGEFHAKDYHDPPPAPLIDAEELTKWSFYRAIIAEFIATLLFLYITVLTV 60

Query: 60  IGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 119
           IG+KSQTD     D CGGVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARK
Sbjct: 61  IGYKSQTDPAKNADACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARK 120

Query: 120 VSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTF 179
           VSLVRA+MYM AQCLGAICGCGLVKAFQ++YY RYGGGANELADGYSTG GLGAEIIGTF
Sbjct: 121 VSLVRAIMYMAAQCLGAICGCGLVKAFQRAYYNRYGGGANELADGYSTGTGLGAEIIGTF 180

Query: 180 VLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIY 239
           VLVYTVF+ATDPKR ARD HVPVLAPL IGFAVFMVHLATIPVTGTGINPARSFG AVIY
Sbjct: 181 VLVYTVFAATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIY 240

Query: 240 NKDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSSSNI 287
           NK+KAWDDQWIFWVGPFIGAAIAA+YHQ++LRASA+KALGS RSSSNI
Sbjct: 241 NKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRASAAKALGSFRSSSNI 288

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255045893|gb|ACU00103.1| plasma membrane intrinsic protein PIP2.1 [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224068717|ref|XP_002326182.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118489416|gb|ABK96511.1| unknown [Populus trichocarpa x Populus deltoides] gi|222833375|gb|EEE71852.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486007|gb|ABK94847.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|260408312|gb|ACX37450.1| plasma membrane intrinsic protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|28395420|gb|AAO39008.1| plasma intrinsic protein 2,2 [Juglans regia] Back     alignment and taxonomy information
>gi|28395418|gb|AAO39007.1| plasma intrinsic protein 2,1 [Juglans regia] Back     alignment and taxonomy information
>gi|57336898|emb|CAH60724.1| putative plasma membrane intrinsic protein [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|3158476|gb|AAC17529.1| aquaporin 2 [Samanea saman] Back     alignment and taxonomy information
>gi|156754275|gb|ABU94631.1| putative aquaporin PIP2;3 [Phaseolus vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.993 1.0 0.787 1.5e-120
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.996 0.996 0.781 3.7e-119
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.993 1.0 0.770 2.6e-118
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.975 0.962 0.782 2.3e-117
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.996 1.0 0.752 1e-114
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.982 0.975 0.752 8.4e-113
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.954 0.978 0.765 6.8e-111
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.947 0.978 0.777 8.7e-111
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.923 0.923 0.704 3.4e-100
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.895 0.898 0.722 3.9e-99
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
 Identities = 226/287 (78%), Positives = 244/287 (85%)

Query:     1 MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
             MAKD+E G EG F  +DY DPPP P   A+ELT+WS YRA+IAEF+ATLLFLYITVLTVI
Sbjct:     1 MAKDVE-GPEG-FQTRDYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVI 58

Query:    61 GHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
             G+K Q+D K             IAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKV
Sbjct:    59 GYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKV 118

Query:   121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
             SL+RAV+YMVAQCLGAICG G VKAFQ SYY RYGGGAN LADGY+TG GL AEIIGTFV
Sbjct:   119 SLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFV 178

Query:   181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
             LVYTVFSATDPKR ARD HVPVLAPL IGFAVFMVHLATIP+TGTGINPARSFG AVIYN
Sbjct:   179 LVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN 238

Query:   241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSSSNI 287
             K K WDD WIFWVGPFIGAAIAA YHQF+LRAS SK+LGS RS++N+
Sbjct:   239 KSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAANV 285
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;IDA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009414 "response to water deprivation" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25794PIP2_PEANo assigned EC number0.67020.93720.9307N/Ano
Q8GRI8PIP25_ORYSJNo assigned EC number0.77350.97900.9929nono
Q8LAA6PIP15_ARATHNo assigned EC number0.70840.92330.9233nono
P93004PIP27_ARATHNo assigned EC number0.78360.95810.9821nono
Q41870PIP11_MAIZENo assigned EC number0.68440.89190.8919N/Ano
P29975AQP1_RATNo assigned EC number0.41260.80130.8550yesno
P43287PIP22_ARATHNo assigned EC number0.82220.99301.0yesno
P43286PIP21_ARATHNo assigned EC number0.80831.01.0nono
Q84RL7PIP21_MAIZENo assigned EC number0.81030.99300.9827N/Ano
Q8H5N9PIP21_ORYSJNo assigned EC number0.78690.98950.9793nono
Q9N2J4AQP1_CANFANo assigned EC number0.42060.81530.8634yesno
P30302PIP23_ARATHNo assigned EC number0.80480.99301.0yesno
Q9AQU5PIP13_MAIZENo assigned EC number0.71370.89190.8767N/Ano
Q8GRT8PIP24_ORYSJNo assigned EC number0.76650.98950.9930nono
Q9AR14PIP15_MAIZENo assigned EC number0.71210.89890.8958N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.76120.98950.9861N/Ano
P61837PIP11_ARATHNo assigned EC number0.73250.87800.8811nono
P47865AQP1_BOVINNo assigned EC number0.42060.81530.8634yesno
Q08451PIP1_SOLLCNo assigned EC number0.73250.87800.8811N/Ano
Q08733PIP13_ARATHNo assigned EC number0.74140.89540.8986nono
P61838PIP11_VICFANo assigned EC number0.73250.87800.8811N/Ano
P42767PIP1_ATRCANo assigned EC number0.72720.96510.9822N/Ano
P29972AQP1_HUMANNo assigned EC number0.43140.82220.8773yesno
Q06611PIP12_ARATHNo assigned EC number0.73000.89540.8986nono
Q9ATN0PIP16_MAIZENo assigned EC number0.68040.90590.8783N/Ano
Q9ZV07PIP26_ARATHNo assigned EC number0.77460.98600.9792nono
Q6PQZ1AQP1_PIGNo assigned EC number0.42330.82920.8782yesno
Q6K215PIP22_ORYSJNo assigned EC number0.80960.98950.9861yesno
Q39196PIP14_ARATHNo assigned EC number0.72320.92330.9233nono
Q9SV31PIP25_ARATHNo assigned EC number0.77700.99651.0nono
Q9SXF8PIP13_ORYSJNo assigned EC number0.70380.87800.875nono
Q7XUA6PIP23_ORYSJNo assigned EC number0.78120.98250.9724nono
Q02013AQP1_MOUSENo assigned EC number0.41100.80480.8587yesno
Q9XF59PIP12_MAIZENo assigned EC number0.68360.93720.9307N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.79510.98600.9929N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.81780.97560.9621nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.80280.94770.9784nono
Q7XSQ9PIP12_ORYSJNo assigned EC number0.72240.89540.8923nono
Q9ATM4PIP27_MAIZENo assigned EC number0.79440.99300.9930N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.75880.96510.9822nono
Q9ATM6PIP24_MAIZENo assigned EC number0.82000.98950.9861N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.81370.98950.9826N/Ano
Q5R819AQP1_PONABNo assigned EC number0.42330.82220.8773yesno
Q6EU94PIP11_ORYSJNo assigned EC number0.70370.91980.9134nono
Q9ATM8PIP22_MAIZENo assigned EC number0.81360.95810.9417N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_280159
SubName- Full=Putative uncharacterized protein; (285 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-98
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 4e-80
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-68
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 7e-46
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 3e-41
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 3e-37
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 7e-37
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 5e-32
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 4e-23
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 5e-20
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 4e-19
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-18
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 5e-17
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  288 bits (739), Expect = 1e-98
 Identities = 123/236 (52%), Positives = 152/236 (64%), Gaps = 18/236 (7%)

Query: 31  ELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGM 90
           EL   SF+RA+IAEF+ATLLF++  V + +G K               G+L +A AFG  
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----------GLLAVALAFGLA 49

Query: 91  IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSY 150
           +F LVYCT  ISG H+NPAVTF L + R++SL+RA+ Y++AQ LGAICG  L+K      
Sbjct: 50  LFTLVYCTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNG- 108

Query: 151 YTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGF 210
             R GG AN LA G + G     EII TF LVYTVF+ TD  R     HV   APL+IGF
Sbjct: 109 LQRAGGFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGF 165

Query: 211 AVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYH 266
           AVF+ HLA  P TG  +NPARSFGPAV+  K   WDD W++WVGP IGAA+AAL +
Sbjct: 166 AVFLNHLAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.66
PLN00184 296 aquaporin NIP1; Provisional 99.66
PLN00182283 putative aquaporin NIP4; Provisional 99.59
PLN00183 274 putative aquaporin NIP7; Provisional 99.58
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.56
PLN00166 250 aquaporin TIP2; Provisional 99.55
PLN00167 256 aquaporin TIP5; Provisional 99.54
PRK05420 231 aquaporin Z; Provisional 99.5
PTZ00016 294 aquaglyceroporin; Provisional 99.5
PLN00027 252 aquaporin TIP; Provisional 99.5
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.46
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.39
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.32
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.29
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.2
COG2116265 FocA Formate/nitrite family of transporters [Inorg 95.56
PRK11562268 nitrite transporter NirC; Provisional 95.42
PRK10805285 formate transporter; Provisional 94.82
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-52  Score=359.87  Aligned_cols=231  Identities=54%  Similarity=0.866  Sum_probs=207.3

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHH
Q 023108           31 ELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAV  110 (287)
Q Consensus        31 ~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPav  110 (287)
                      +..+++.+|++++||++|++++|++|+++......         +...+.+.+++.+|+.+++.+++++++||||+||||
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---------~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAV   74 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---------GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAV   74 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCCchhHHHHHHHHHHHHHHHhhhccccccccCHHH
Confidence            44568999999999999999999999988765541         233467889999999999999999999999999999


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHH-hc
Q 023108          111 TFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFS-AT  189 (287)
Q Consensus       111 Tla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~l~T~~L~~~vl~-~~  189 (287)
                      |+++++.|++++.+++.|+.+|++|+++|+++++.+.+.+++..+.+.+.+.++.+.+|+++.|++.||+|++++++ ..
T Consensus        75 T~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~  154 (238)
T KOG0223|consen   75 TLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATAT  154 (238)
T ss_pred             HHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEee
Confidence            99999999999999999999999999999999999998764445556677889999999999999999999999998 77


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 023108          190 DPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQFI  269 (287)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGa~~a~~~y~~~  269 (287)
                      |+|++       .+.|+.||+++.+.+++.+++||++|||||+|||++.++   .|+++|+||+||++|+++++++|+++
T Consensus       155 d~~~~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v  224 (238)
T KOG0223|consen  155 DPRRS-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLV  224 (238)
T ss_pred             cCCCc-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHh
Confidence            77665       478999999999999999999999999999999999975   49999999999999999999999999


Q ss_pred             ccccccccccC
Q 023108          270 LRASASKALGS  280 (287)
Q Consensus       270 ~~~~~~~~~~~  280 (287)
                      +.++.+|+.++
T Consensus       225 ~~~~~~~~~~~  235 (238)
T KOG0223|consen  225 FIPDESEPTKS  235 (238)
T ss_pred             ccCccccccCc
Confidence            99985555443

>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-116
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-116
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-116
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-116
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-115
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-47
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 5e-46
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 3e-37
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 3e-37
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 3e-37
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 3e-35
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 8e-32
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-31
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-31
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 8e-30
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-29
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-20
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 4e-17
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 9e-16
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 9e-16
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 9e-16
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 3e-15
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 3e-15
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 4e-15
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 9e-14
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-13
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 4e-13
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 6e-13
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-12
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 3e-06
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  416 bits (1068), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/284 (72%), Positives = 229/284 (80%), Gaps = 6/284 (2%)
Query: 1   MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
           M+K++    +   H KDY DPPPAP     EL  WSF+RA IAEFIATLLFLYITV TVI
Sbjct: 1   MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 61  GHKSQTDAKHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
           GH  +T                IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61  GHSKET------VVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
           SL+RA++YM+AQCLGAICG GLVKAF K  Y ++GGGAN +A GY+ G  LGAEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
           LVYTVFSATDPKR ARD HVP+LAPL IGFAVFMVHLATIP+TGTGINPARSFG AVI+N
Sbjct: 175 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 234
Query: 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSS 284
            +K WDDQWIFWVGPFIGAA+AA YHQ++LRA+A KALGS RS+
Sbjct: 235 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-146
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-116
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-111
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-109
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-108
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-106
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-106
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-106
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-103
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-103
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-82
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 5e-52
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 6e-52
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  411 bits (1058), Expect = e-146
 Identities = 210/284 (73%), Positives = 234/284 (82%), Gaps = 6/284 (2%)

Query: 1   MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVI 60
           M+K++    +   H KDY DPPPAP     EL  WSF+RA IAEFIATLLFLYITV TVI
Sbjct: 24  MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83

Query: 61  GHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120
           GH  +T        CG VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84  GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137

Query: 121 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGAGLGAEIIGTFV 180
            L+RA++YM+AQCLGAICG GLVKAF K  Y ++GGGAN +A GY+ G  LGAEIIGTFV
Sbjct: 138 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197

Query: 181 LVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN 240
           LVYTVFSATDPKR ARD HVP+LAPL IGFAVFMVHLATIP+TGTGINPARSFG AVI+N
Sbjct: 198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 257

Query: 241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSS 284
            +K WDDQWIFWVGPFIGAA+AA YHQ++LRA+A KALG  RS+
Sbjct: 258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.59
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.58
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.48
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.48
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.47
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.45
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.44
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.44
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.4
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.4
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.39
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.37
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.31
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 93.59
3tds_E268 Formate/nitrite transporter; membrane protein; HET 89.75
3kly_A280 Putative formate transporter 1; membrane protein, 86.73
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=3.6e-63  Score=446.04  Aligned_cols=281  Identities=75%  Similarity=1.267  Sum_probs=210.1

Q ss_pred             CCcccccccccccCCCCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchh
Q 023108            1 MAKDIEVGREGEFHDKDYHDPPPAPLIGAEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGI   80 (287)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |+||+|.++++.|+.||++||++.+..+.+|+++++++|++++||+|||+|+|++++++.+.......      ....++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~------~~~~g~   97 (304)
T 3cn5_A           24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV------CGSVGL   97 (304)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCST------TCSCHH
T ss_pred             HHHHhhccccccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCC------CCCCCc
Confidence            78999887667788999999999999999999999999999999999999999999988765433211      234578


Q ss_pred             HHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcCCCccc
Q 023108           81 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANE  160 (287)
Q Consensus        81 ~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~  160 (287)
                      +.+++++|+++++.+|+++++||||+|||||+++++.|+++|++++.|+++|++||++|+++++.++++.++..+.+.+.
T Consensus        98 l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~  177 (304)
T 3cn5_A           98 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS  177 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCC
T ss_pred             eeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999877666555565


Q ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhcC
Q 023108          161 LADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIYN  240 (287)
Q Consensus       161 ~~~~~s~~~~f~~E~l~T~~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~~  240 (287)
                      +.++.+..++|+.|+++||+|+++++.+.|+++....++.+.+.|+.||++++++.++.+++||+++|||||||||++++
T Consensus       178 ~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~  257 (304)
T 3cn5_A          178 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN  257 (304)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHC
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHc
Confidence            66778889999999999999999999888866543322224588999999999999999999999999999999999965


Q ss_pred             CCCCCCcccccchhhHHHHHHHHHHHHHHccccccccccCccCCCCC
Q 023108          241 KDKAWDDQWIFWVGPFIGAAIAALYHQFILRASASKALGSRRSSSNI  287 (287)
Q Consensus       241 ~~~~~~~~wvy~v~p~lGa~~a~~~y~~~~~~~~~~~~~~~~~~~~~  287 (287)
                      ++..|+++|+||+||++|+++|+++|++++.+++.+..+++|+++.|
T Consensus       258 ~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~~~~~~~~~~~~~~~  304 (304)
T 3cn5_A          258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNPTN  304 (304)
T ss_dssp             CHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCCC-------------
T ss_pred             cCCCcCceEEEeehHHHHHHHHHHHHHHHhCCCCCCcccccccCCCC
Confidence            55679999999999999999999999999999877777788888765
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A* Back     alignment and structure
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 6e-59
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 9e-51
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 2e-42
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 8e-42
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  186 bits (473), Expect = 6e-59
 Identities = 103/248 (41%), Positives = 146/248 (58%), Gaps = 10/248 (4%)

Query: 29  AEELTRWSFYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFG 88
           A E  +  F+RA++AEF+A +LF++I++ + +G      +            + ++ AFG
Sbjct: 2   ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGA--VQDNVKVSLAFG 59

Query: 89  GMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQK 148
             I  L      ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI    ++     
Sbjct: 60  LSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119

Query: 149 SYYTRYGGGANELADGYSTGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLSI 208
           S       G N LA G ++G GLG EIIGT  LV  V + TD +R+     +    PL+I
Sbjct: 120 SLP-DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAI 174

Query: 209 GFAVFMVHLATIPVTGTGINPARSFGPAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQF 268
           GF+V + HL  I  TG GINPARSFG +VI +    + D WIFWVGPFIGAA+A L + F
Sbjct: 175 GFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDF 231

Query: 269 ILRASASK 276
           IL   +S 
Sbjct: 232 ILAPRSSD 239
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.54
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.42
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.37
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.34
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-50  Score=353.63  Aligned_cols=225  Identities=27%  Similarity=0.397  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHH
Q 023108           37 FYRAIIAEFIATLLFLYITVLTVIGHKSQTDAKHGGDGCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL  116 (287)
Q Consensus        37 ~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~~  116 (287)
                      +.|+|++||+||++|+|++++++........         ..+.+.+++++|+++++.+++++++||||+|||||+++++
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~---------~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i   72 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---------SFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWL   72 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCC---------CcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHH
Confidence            5789999999999999999988765544322         2356789999999999999999999999999999999999


Q ss_pred             hcCCchhHHHHHHHHHhHHHHHhhhhhhhhcchhhhhcC-----------------CCccccCCCCcchhhHHHHHHHHH
Q 023108          117 ARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYG-----------------GGANELADGYSTGAGLGAEIIGTF  179 (287)
Q Consensus       117 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~~~f~~E~l~T~  179 (287)
                      .|+++|.+.+.|+++|++|+++|+++++.++++.+...+                 ...+.+.++.+..++|+.|+++|+
T Consensus        73 ~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf  152 (254)
T d1fx8a_          73 FACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITA  152 (254)
T ss_dssp             HSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCcHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876543211                 112334566788999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhCCCCCcccccccHHHHHhc----------CCCCCCCccc
Q 023108          180 VLVYTVFSATDPKRKARDPHVPVLAPLSIGFAVFMVHLATIPVTGTGINPARSFGPAVIY----------NKDKAWDDQW  249 (287)
Q Consensus       180 ~L~~~vl~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~i~~----------~~~~~~~~~w  249 (287)
                      +|+++++.+.|++++...   ....|+.+|+.+.......+++||++||||||||||++.          .++.+|+++|
T Consensus       153 ~lv~~il~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~w  229 (254)
T d1fx8a_         153 ILMGLILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFL  229 (254)
T ss_dssp             HHHHHHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTH
T ss_pred             HHHHHHHHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeee
Confidence            999999999988776543   457899999999999999999999999999999999983          1245899999


Q ss_pred             ccchhhHHHHHHHHHHHHHHcccc
Q 023108          250 IFWVGPFIGAAIAALYHQFILRAS  273 (287)
Q Consensus       250 vy~v~p~lGa~~a~~~y~~~~~~~  273 (287)
                      |||++|++|+++++++||+++..|
T Consensus       230 vy~vgP~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         230 VPLFGPIVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHTGGG
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999998765
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure