Citrus Sinensis ID: 023111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQSPQGESLSEPQTQPQDTAKETPSAVPPPPKPKN
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHEcccHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccccccccccHcccccccccccccccccccccccEEHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLcssspsytssrpsvyslsssatpiscpkttnfhlsttipqlgssLFSQWSglkhlgisvtpksvnllekkrrckrgvfyaslfgvgapEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEReiglddiststqnpnnlnrtdtmstppsvtstedsqtvadpngaasankaytSEEYLKMTEEQLKASAAHqqeqspqgeslsepqtqpqdtaketpsavppppkpkn
Flexible Loop (DISEMBL)
MTFAFIKIilgrnkkqhHIFALKQMTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLgisvtpksvnllekKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLrafqptirelqdVSREFKSTLereiglddiststqnpnnlnrtdtmstppsvtstedsqtvadpngaasanKAYTSEEYLKMTEEQLKASAAHQQEQSpqgeslsepqtqpqdtaketpsavppppkpkn
Low Complexity Region (SEG)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHAlllcssspsytssrpsvyslsssATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQSPQGESLSEPQTQPQDTAKETPSAVppppkpkN
Disordered region (IsUnstruct)
**FAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLC************************CPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL************************************************************************************************************************
Disordered Region (DISOPRED)
*TFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSSP*************************************************************************YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQP*****************************************************************************************************************************
Disordered Region (DISEMBL)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSS******************PISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDT********************GAASANKAYTSEEYLKMTEEQ********************************************
Disordered Region (DISPRO)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPI**PKTTNFHLSTTIPQLGSSLFSQWSGLKHLG******************RGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGL***************************************************YLK*TEEQLKASA***************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQSPQGESLSEPQTQPQDTAKETPSAVPPPPKPKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q94G16	261	Sec-independent protein t	N/A	no	0.867	0.954	0.573	6e-70
Q9XH75	260	Sec-independent protein t	yes	no	0.850	0.938	0.579	2e-60
O48950	243	Sec-independent protein t	N/A	no	0.536	0.633	0.536	3e-40
Q2R237	247	Sec-independent protein t	yes	no	0.425	0.493	0.642	1e-38
Q5N2J3	91	Sec-independent protein t	yes	no	0.191	0.604	0.564	7e-12
Q31RR1	91	Sec-independent protein t	yes	no	0.191	0.604	0.564	7e-12
Q8DJ44	77	Sec-independent protein t	yes	no	0.212	0.792	0.540	8e-11
Q9XH46	137	Sec-independent protein t	N/A	no	0.226	0.474	0.416	8e-09
Q75GK3	170	Sec-independent protein t	no	no	0.184	0.311	0.466	3e-08
Q9XFJ8	170	Sec-independent protein t	N/A	no	0.191	0.323	0.467	8e-08

>sp|Q94G16|TATB_PEA Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum GN=TATB PE=1 SV=1

 Score =  264 bits (675), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 181/267 (67%), Gaps = 18/267 (6%)

Query: 25  MTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSS 84
           MT    +ASST  +LLC   P   +   S+    S+ TP S  K  +FHL +    LG  
Sbjct: 1   MTPSLAIASSTSTMLLC---PKLGTCSMSL----STCTPTSHSKIHHFHLYS----LGKR 49

Query: 85  LFSQWSGLKHLGISVTPKS--VNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFG 142
           LF+ W+G K LG S  PK    + + KK RCK  V YASLFGVGAPEALVIGVVALLVFG
Sbjct: 50  LFTPWNGFKQLGFSTKPKKPLFHFIGKKGRCKGKVVYASLFGVGAPEALVIGVVALLVFG 109

Query: 143 PKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDT 202
           PKGLAEVARNLGKTLR FQPTIRE+QDVSREFKSTLEREIG+DDI+   Q+  + N  +T
Sbjct: 110 PKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGIDDITNPLQSTYSSNVRNT 169

Query: 203 MSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQ--SPQGES 260
             TP +   T +SQT  DPNG    +KAY+SEEYLK+TEEQLKA AA QQEQ  SP+ + 
Sbjct: 170 TPTPSATEITNNSQTAVDPNGKVDESKAYSSEEYLKITEEQLKAVAAQQQEQTSSPKEDE 229

Query: 261 LSEPQTQPQDTAKETPSAVPPPPKPKN 287
           + E Q QP   A ET + VPPP KP++
Sbjct: 230 I-EQQIQP--PANETAATVPPPQKPES 253

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.
Pisum sativum (taxid: 3888)

>sp|Q9XH75|TATB_ARATH Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis thaliana GN=TATB PE=1 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/264 (57%), Positives = 174/264 (65%), Gaps = 20/264 (7%)

Query: 31  MASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWS 90
           MA +   +   SSSP+ T S    Y    S    S P     +LS+    LGSS FS + 
Sbjct: 1   MAMALQIIASSSSSPTITKSHLFSYPPLQSRYKASKP-----NLSSWFSLLGSSRFSPYI 55

Query: 91  GLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVA 150
           GLKHLGIS++PKS N  EKKRRCK  +  ASLFGVGAPEALVIGVVALLVFGPKGLAEVA
Sbjct: 56  GLKHLGISISPKSSNP-EKKRRCKSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVA 114

Query: 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDIST---STQNPNNLNRTDTMSTPP 207
           RNLGKTLR FQPTIRELQDVSR+FKSTLEREIGLDDIST     QN  N  +      PP
Sbjct: 115 RNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTPNVYNQNRTNPVQPPPPPPPP 174

Query: 208 SVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKA-SAAHQQ-------EQSPQGE 259
           SV STE   T  DPN + S  KAYTSE+YLK TEEQLKA S A  Q       ++ PQ  
Sbjct: 175 SVPSTEAPVTANDPNDSQSP-KAYTSEDYLKFTEEQLKALSPAESQTEDQTQTQEPPQPT 233

Query: 260 SLSEP--QTQPQDTAKETPSAVPP 281
           ++  P  ++QP  TA+ET +A PP
Sbjct: 234 TVQTPTGESQPNGTARETTAASPP 257

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Arabidopsis thaliana (taxid: 3702)

>sp|O48950|TATB_MAIZE Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays GN=TATB PE=1 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 114/179 (63%), Gaps = 25/179 (13%)

Query: 89  WSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAE 148
           W G++   I     S  +    R  +R V  ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 37  WKGVEWGSIQTRMVSSFVAVGSRTRRRNVICASLFGVGAPEALVIGVVALLVFGPKGLAE 96

Query: 149 VARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPS 208
           VARNLGKTLRAFQPTIRELQDVSREF+STLEREIG+D++S ST       R  TM+    
Sbjct: 97  VARNLGKTLRAFQPTIRELQDVSREFRSTLEREIGIDEVSQSTN-----YRPTTMNN--- 148

Query: 209 VTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQL-----------KASAAHQQEQSP 256
                + Q  ADPN        YTSEE +K+TEEQ+           + + + QQE++P
Sbjct: 149 -----NQQPAADPN-VKPEPAPYTSEELMKVTEEQIAASAAAAWNPQQPATSQQQEEAP 201

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Zea mays (taxid: 4577)

>sp|Q2R237|TATB_ORYSJ Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa subsp. japonica GN=TATB PE=2 SV=2

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 102/140 (72%), Gaps = 18/140 (12%)

Query: 108 EKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167
           E KR  +    YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL
Sbjct: 65  ESKRTSRGTGVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 124

Query: 168 QDVSREFKSTLEREIGLDDISTSTQNPNNLN-RTDTM--STPPSVTSTEDSQTVADPNGA 224
           QDVSREF+STLEREIGLD++      P ++N R  TM  S  P++  + D +  A P   
Sbjct: 125 QDVSREFRSTLEREIGLDEV------PPSMNYRPPTMNNSQQPAIDQSSDDKPEAAP--- 175

Query: 225 ASANKAYTSEEYLKMTEEQL 244
                 YTSEE +K+TEEQL
Sbjct: 176 ------YTSEELIKVTEEQL 189

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5N2J3|TATA_SYNP6 Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tatA PE=3 SV=1

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 7/62 (11%)

Query: 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
           + FG+G PE LVI  +ALLVFGPK L E+ R+LGK LR F       QD SREF+S ++R
Sbjct: 2   NFFGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGF-------QDASREFESEIKR 54

Query: 181 EI 182
           EI
Sbjct: 55  EI 56

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|Q31RR1|TATA_SYNE7 Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942) GN=tatA PE=3 SV=1

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 7/62 (11%)

Query: 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
           + FG+G PE LVI  +ALLVFGPK L E+ R+LGK LR F       QD SREF+S ++R
Sbjct: 2   NFFGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGF-------QDASREFESEIKR 54

Query: 181 EI 182
           EI
Sbjct: 55  EI 56

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|Q8DJ44|TATA_THEEB Sec-independent protein translocase protein TatA OS=Thermosynechococcus elongatus (strain BP-1) GN=tatA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query: 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
           ++FG+G PE +VI VVALL+FGPK L E+ R+LGKT RAF+   RE QD  +   + LE 
Sbjct: 2   NVFGIGLPELIVILVVALLIFGPKKLPEIGRSLGKTKRAFEEASREFQDEIKRQTAALEE 61

Query: 181 E 181
           E
Sbjct: 62  E 62

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q9XH46|TATA_PEA Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum GN=TATA PE=1 SV=1

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 7/72 (9%)

Query: 110 KRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169
           K R  +G    + FG+G PE +VI  VA LVFGPK L EV R++G+T+++F       Q 
Sbjct: 46  KTRTTKGFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSF-------QQ 98

Query: 170 VSREFKSTLERE 181
            ++EF++ L++E
Sbjct: 99  AAKEFETELKKE 110

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Pisum sativum (taxid: 3888)

>sp|Q75GK3|TATA_ORYSJ Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica GN=TATA PE=2 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 7/60 (11%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
           LFG+G PE +VI  VA LVFGPK L E+ R++GKT+++F       Q  ++EF++ L++E
Sbjct: 84  LFGLGVPELVVIAGVAALVFGPKQLPEIGRSIGKTVKSF-------QQAAKEFETELKKE 136

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XFJ8|TATA_MAIZE Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays GN=TATA PE=1 SV=1

 Score = 58.2 bits (139), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 7/62 (11%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
           LFG+G PE  VI  VA LVFGPK L E+ R++GKT+++F       Q  ++EF++ L++E
Sbjct: 85  LFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSF-------QQAAKEFETELKKE 137

Query: 182 IG 183
            G
Sbjct: 138 PG 139

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
224134885	259	predicted protein [Populus trichocarpa]	0.874	0.969	0.653	1e-75
118486079	259	unknown [Populus trichocarpa]	0.874	0.969	0.653	2e-75
255545224	255	conserved hypothetical protein [Ricinus	0.763	0.858	0.683	2e-75
224122318	264	predicted protein [Populus trichocarpa]	0.846	0.920	0.653	2e-73
225464525	261	PREDICTED: uncharacterized protein LOC10	0.888	0.977	0.603	1e-70
302143823	257	unnamed protein product [Vitis vinifera]	0.874	0.976	0.609	2e-70
356575990	236	PREDICTED: uncharacterized protein LOC10	0.770	0.936	0.611	8e-69
75250093	261	RecName: Full=Sec-independent protein tr	0.867	0.954	0.573	3e-68
359806948	238	uncharacterized protein LOC100781301 [Gl	0.777	0.936	0.599	1e-65
255647238	238	unknown [Glycine max]	0.777	0.936	0.595	3e-65

>gi|224134885|ref|XP_002321929.1| predicted protein [Populus trichocarpa] gi|222868925|gb|EEF06056.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 170/260 (65%), Positives = 193/260 (74%), Gaps = 9/260 (3%)

Query: 30  VMAS-STHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQ 88
           VMAS  +++  LCS+S   TS++ ++Y L SS+  I   K   F LST+I   G   FSQ
Sbjct: 2   VMASLISNSAPLCSAS---TSTKSALYPLPSSSF-IPYHKAPQFGLSTSIALPGLGPFSQ 57

Query: 89  WSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAE 148
           WSGLKHL IS  P+ +   E+KRRCK  V +ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 58  WSGLKHLDISTPPRFIRK-ERKRRCKGKVIHASLFGVGAPEALVIGVVALLVFGPKGLAE 116

Query: 149 VARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPS 208
           VARNLGKTLRAFQPTI+ELQ+VSREFKSTLEREIGLD+IS  TQN  N   T+T STP S
Sbjct: 117 VARNLGKTLRAFQPTIKELQEVSREFKSTLEREIGLDEISNQTQNTYNSKITNTASTPSS 176

Query: 209 VTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQ-SPQGESLSEPQTQ 267
             ST  S TVADPNGA S NK+YTSEEYLK+TEEQLKASAA QQ Q  P  ES  EPQ Q
Sbjct: 177 AGSTNISTTVADPNGAPSPNKSYTSEEYLKITEEQLKASAAKQQGQPPPPAESQLEPQAQ 236

Query: 268 PQDTAKETPSAVPPPPKPKN 287
           PQ   +ET  A+PPP K +N
Sbjct: 237 PQP--QETTKAMPPPEKLEN 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486079|gb|ABK94883.1| unknown [Populus trichocarpa]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/260 (65%), Positives = 193/260 (74%), Gaps = 9/260 (3%)

Query: 30  VMAS-STHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQ 88
           VMAS  +++  LCS+S   TS++ ++Y L SS+  I   K   F LST+I   G   FSQ
Sbjct: 2   VMASLISNSAPLCSTS---TSTKSALYPLPSSSF-IPYHKAPQFGLSTSIALPGLGPFSQ 57

Query: 89  WSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAE 148
           WSGLKHL IS  P+ +   E+KRRCK  V +ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 58  WSGLKHLDISTPPRFIRK-ERKRRCKGKVIHASLFGVGAPEALVIGVVALLVFGPKGLAE 116

Query: 149 VARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPS 208
           VARNLGKTLRAFQPTI+ELQ+VSREFKSTLEREIGLD+IS  TQN  N   T+T STP S
Sbjct: 117 VARNLGKTLRAFQPTIKELQEVSREFKSTLEREIGLDEISNQTQNTYNSKITNTASTPSS 176

Query: 209 VTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQ-SPQGESLSEPQTQ 267
             ST  S TVADPNGA S NK+YTSEEYLK+TEEQLKASAA QQ Q  P  ES  EPQ Q
Sbjct: 177 AGSTNISTTVADPNGAPSPNKSYTSEEYLKITEEQLKASAAKQQGQPPPPAESQLEPQAQ 236

Query: 268 PQDTAKETPSAVPPPPKPKN 287
           PQ   +ET  A+PPP K +N
Sbjct: 237 PQP--QETTKAMPPPEKLEN 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545224|ref|XP_002513673.1| conserved hypothetical protein [Ricinus communis] gi|223547581|gb|EEF49076.1| conserved hypothetical protein [Ricinus communis]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/221 (68%), Positives = 173/221 (78%), Gaps = 2/221 (0%)

Query: 68  KTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGA 127
           K + F LS+ I  LG + FSQWSGLKHLG+S+ PK ++  E+KRRCK  V +ASLFGVGA
Sbjct: 34  KNSKFSLSSWISHLGIAPFSQWSGLKHLGVSLMPKFLSK-ERKRRCKSMVVHASLFGVGA 92

Query: 128 PEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDI 187
           PEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFK+TLEREIGLDDI
Sbjct: 93  PEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDDI 152

Query: 188 STSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKAS 247
            +  +N  + NR +  S P S  S E+S T ADPNGA S   AYTSEEYLK+TEEQLKAS
Sbjct: 153 PSQRENMYSSNRANIASAPSSPASNENSPTEADPNGAPSQTTAYTSEEYLKITEEQLKAS 212

Query: 248 AAHQQEQSP-QGESLSEPQTQPQDTAKETPSAVPPPPKPKN 287
           AA QQ Q+P  GES  E +++PQ T +ET  A PPP KP+N
Sbjct: 213 AAQQQVQTPASGESQFESRSEPQVTIRETAGAKPPPQKPEN 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122318|ref|XP_002318805.1| predicted protein [Populus trichocarpa] gi|222859478|gb|EEE97025.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 164/251 (65%), Positives = 183/251 (72%), Gaps = 8/251 (3%)

Query: 40  LCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISV 99
           LCS+S   TS++ ++Y L  S   I   K   F LST IPQL    FSQWSGLKHLGIS 
Sbjct: 13  LCSTS---TSTKSALYPLPPSPL-IPYHKAPKFGLSTWIPQLCLGPFSQWSGLKHLGISF 68

Query: 100 TPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRA 159
           +P  V   E+K RCK  V +ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLR 
Sbjct: 69  SPNFV-AKERKGRCKGKVIHASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRE 127

Query: 160 FQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVA 219
           FQPTI+ELQ+VSREFKSTLEREIGLD+IS  TQN  +   T+T S P S  ST  S TV 
Sbjct: 128 FQPTIKELQEVSREFKSTLEREIGLDEISNQTQNTYSSKITNTASNPSSAGSTNISPTVT 187

Query: 220 DPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQS-PQGESLSEPQTQ--PQDTAKETP 276
           DPNGA S N AYTSEEYLK+TEEQLKASAA QQ  S P  ES  EP+TQ  PQ+  K+T 
Sbjct: 188 DPNGAPSPNSAYTSEEYLKITEEQLKASAAEQQGLSTPPVESQLEPETQLRPQEPVKDTA 247

Query: 277 SAVPPPPKPKN 287
            A+P P KP+N
Sbjct: 248 GAMPSPEKPEN 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464525|ref|XP_002270827.1| PREDICTED: uncharacterized protein LOC100254207 [Vitis vinifera]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 160/265 (60%), Positives = 191/265 (72%), Gaps = 10/265 (3%)

Query: 27  IVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLF 86
           + T MAS      L  SSPS T S  ++Y+LSSS++ I  PK  +FH ST +PQ G   F
Sbjct: 1   MATPMASPIFTPTLFFSSPSTTKS--TIYALSSSSS-IPLPKGPSFHFSTLVPQPGLGPF 57

Query: 87  SQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGL 146
           S W+GL+HLGISV  KS+ +  ++ RCK  V YASLFGVGAPEALVIGVVALLVFGPKGL
Sbjct: 58  SSWNGLRHLGISVKQKSLKI-GRRGRCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGL 116

Query: 147 AEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQN---PNNLNRTDTM 203
           AEVARNLGKTLR FQPTI+ELQ+VS+EFKSTLE+EIG D+IS+S Q+   P   N T + 
Sbjct: 117 AEVARNLGKTLREFQPTIKELQEVSKEFKSTLEKEIGFDEISSSIQDTYRPRTTNPTTST 176

Query: 204 STPPSVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQS-PQGESLS 262
            +  S    EDS  V DPNGA S NKAY+SEEYLK+TEEQLKASAA QQ Q+ P GES  
Sbjct: 177 PS--SNAGIEDSGNVVDPNGAPSLNKAYSSEEYLKITEEQLKASAAQQQSQTPPPGESQL 234

Query: 263 EPQTQPQDTAKETPSAVPPPPKPKN 287
           EPQT+P    +E  +A+PP   PK+
Sbjct: 235 EPQTEPLGAVQEGATAIPPSKNPKS 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143823|emb|CBI22684.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 189/261 (72%), Gaps = 10/261 (3%)

Query: 31  MASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWS 90
           MAS      L  SSPS T S  ++Y+LSSS++ I  PK  +FH ST +PQ G   FS W+
Sbjct: 1   MASPIFTPTLFFSSPSTTKS--TIYALSSSSS-IPLPKGPSFHFSTLVPQPGLGPFSSWN 57

Query: 91  GLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVA 150
           GL+HLGISV  KS+ +  ++ RCK  V YASLFGVGAPEALVIGVVALLVFGPKGLAEVA
Sbjct: 58  GLRHLGISVKQKSLKI-GRRGRCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVA 116

Query: 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQN---PNNLNRTDTMSTPP 207
           RNLGKTLR FQPTI+ELQ+VS+EFKSTLE+EIG D+IS+S Q+   P   N T +  +  
Sbjct: 117 RNLGKTLREFQPTIKELQEVSKEFKSTLEKEIGFDEISSSIQDTYRPRTTNPTTSTPS-- 174

Query: 208 SVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQS-PQGESLSEPQT 266
           S    EDS  V DPNGA S NKAY+SEEYLK+TEEQLKASAA QQ Q+ P GES  EPQT
Sbjct: 175 SNAGIEDSGNVVDPNGAPSLNKAYSSEEYLKITEEQLKASAAQQQSQTPPPGESQLEPQT 234

Query: 267 QPQDTAKETPSAVPPPPKPKN 287
           +P    +E  +A+PP   PK+
Sbjct: 235 EPLGAVQEGATAIPPSKNPKS 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575990|ref|XP_003556118.1| PREDICTED: uncharacterized protein LOC100799045 [Glycine max]

 Score =  266 bits (680), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 148/242 (61%), Positives = 168/242 (69%), Gaps = 21/242 (8%)

Query: 56  SLSSSATPISCPKTTN----------FHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVN 105
           SL  +++ +SCPK  N          FHLS+    L   LFS WSGLKHLGIS  PK + 
Sbjct: 4   SLVMASSSMSCPKLGNCAVSHTKFQAFHLSSMFSPLDRGLFSPWSGLKHLGISAKPKPLL 63

Query: 106 LLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165
            +++K  CK  V YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR
Sbjct: 64  HIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 123

Query: 166 ELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAA 225
           ELQDVSREFKSTLEREIGLDD  + TQN  N N  +T  T         S +  DPNG  
Sbjct: 124 ELQDVSREFKSTLEREIGLDDNLSPTQNTYNSNVRNTTPT---------SSSTVDPNGTL 174

Query: 226 SANKAYTSEEYLKMTEEQLKASAAHQQEQSPQGESLSEPQTQPQDTAKETPSAVPPPPKP 285
              KAY+SEEYLK+TEEQLKASAA QQ Q+P  E  + PQ QP   A+ET + VPPP KP
Sbjct: 175 DPTKAYSSEEYLKITEEQLKASAAQQQGQTPPKEGENGPQIQP--PAEETATTVPPPLKP 232

Query: 286 KN 287
           ++
Sbjct: 233 ES 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75250093|sp|Q94G16.1|TATB_PEA RecName: Full=Sec-independent protein translocase protein TATB, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 106; AltName: Full=Protein TWIN-ARGININE TRANSLOCATION B; Flags: Precursor gi|15277532|gb|AAK93949.1|AF284760_1 HCF106 [Pisum sativum]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 181/267 (67%), Gaps = 18/267 (6%)

Query: 25  MTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSS 84
           MT    +ASST  +LLC   P   +   S+    S+ TP S  K  +FHL +    LG  
Sbjct: 1   MTPSLAIASSTSTMLLC---PKLGTCSMSL----STCTPTSHSKIHHFHLYS----LGKR 49

Query: 85  LFSQWSGLKHLGISVTPKS--VNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFG 142
           LF+ W+G K LG S  PK    + + KK RCK  V YASLFGVGAPEALVIGVVALLVFG
Sbjct: 50  LFTPWNGFKQLGFSTKPKKPLFHFIGKKGRCKGKVVYASLFGVGAPEALVIGVVALLVFG 109

Query: 143 PKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDT 202
           PKGLAEVARNLGKTLR FQPTIRE+QDVSREFKSTLEREIG+DDI+   Q+  + N  +T
Sbjct: 110 PKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGIDDITNPLQSTYSSNVRNT 169

Query: 203 MSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQ--SPQGES 260
             TP +   T +SQT  DPNG    +KAY+SEEYLK+TEEQLKA AA QQEQ  SP+ + 
Sbjct: 170 TPTPSATEITNNSQTAVDPNGKVDESKAYSSEEYLKITEEQLKAVAAQQQEQTSSPKEDE 229

Query: 261 LSEPQTQPQDTAKETPSAVPPPPKPKN 287
           + E Q QP   A ET + VPPP KP++
Sbjct: 230 I-EQQIQP--PANETAATVPPPQKPES 253

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806948|ref|NP_001241582.1| uncharacterized protein LOC100781301 [Glycine max] gi|255639713|gb|ACU20150.1| unknown [Glycine max]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/242 (59%), Positives = 169/242 (69%), Gaps = 19/242 (7%)

Query: 56  SLSSSATPISCPKTTN----------FHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVN 105
           SL+ +++ + CPK  +          FHLS+    LG  L S WSGLKHLGIS   K + 
Sbjct: 4   SLAMASSSMLCPKLGSCAVSHTKFQAFHLSSMFSPLGRGLVSPWSGLKHLGISAKAKPLI 63

Query: 106 LLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165
            +++K  CK  V YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLR FQPTI+
Sbjct: 64  HIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIK 123

Query: 166 ELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAA 225
           ELQDVSREFKSTLEREIGLDD  + TQN  N N  +T       T T  S +  DPNG  
Sbjct: 124 ELQDVSREFKSTLEREIGLDDNLSPTQNTYNSNIRNT-------TPTSSSTSTVDPNGTP 176

Query: 226 SANKAYTSEEYLKMTEEQLKASAAHQQEQSPQGESLSEPQTQPQDTAKETPSAVPPPPKP 285
              KAY+SEEYLK+TEEQLKASAA QQ Q+P  E  +EPQ QP  +A+ET + VPPP KP
Sbjct: 177 DPTKAYSSEEYLKITEEQLKASAAQQQGQTPSKEGDNEPQIQP--SAEETATTVPPPQKP 234

Query: 286 KN 287
           ++
Sbjct: 235 ES 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647238|gb|ACU24087.1| unknown [Glycine max]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 144/242 (59%), Positives = 169/242 (69%), Gaps = 19/242 (7%)

Query: 56  SLSSSATPISCPKTTN----------FHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVN 105
           SL+ +++ + CPK  +          FHLS+    LG  L S WSGLKHLGIS   K + 
Sbjct: 4   SLAMASSSMLCPKLGSCAVSHTKFQAFHLSSMFSPLGRGLVSPWSGLKHLGISAKAKPLI 63

Query: 106 LLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165
            +++K  CK  V YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLR FQPTI+
Sbjct: 64  HIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIK 123

Query: 166 ELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAA 225
           ELQDVS+EFKSTLEREIGLDD  + TQN  N N  +T       T T  S +  DPNG  
Sbjct: 124 ELQDVSKEFKSTLEREIGLDDNLSPTQNTYNSNIRNT-------TPTSSSTSTVDPNGTP 176

Query: 226 SANKAYTSEEYLKMTEEQLKASAAHQQEQSPQGESLSEPQTQPQDTAKETPSAVPPPPKP 285
              KAY+SEEYLK+TEEQLKASAA QQ Q+P  E  +EPQ QP  +A+ET + VPPP KP
Sbjct: 177 DPTKAYSSEEYLKITEEQLKASAAQQQGQTPSKEGDNEPQIQP--SAEETATTVPPPQKP 234

Query: 286 KN 287
           ++
Sbjct: 235 ES 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
UNIPROTKB|Q94G16	261	TATB "Sec-independent protein	0.735	0.808	0.612	8.1e-60
TAIR|locus:2156722	260	HCF106 "HIGH CHLOROPHYLL FLUOR	0.721	0.796	0.628	1.9e-58
UNIPROTKB|O48950	243	TATB "Sec-independent protein	0.606	0.716	0.531	1.3e-38
UNIPROTKB|Q9XH46	137	TATA "Sec-independent protein	0.376	0.788	0.379	8.6e-11
TAIR|locus:2184241	147	AT5G28750 [Arabidopsis thalian	0.428	0.836	0.298	4.4e-10
UNIPROTKB|Q9XFJ8	170	TATA "Sec-independent protein	0.191	0.323	0.467	1e-08
TIGR_CMR|GSU_0022	111	GSU_0022 "mttA/Hcf106 family p	0.209	0.540	0.409	3.1e-07
TIGR_CMR|CHY_2570	53	CHY_2570 "twin-arginine transl	0.153	0.830	0.454	6.8e-06
TIGR_CMR|CPS_0163	85	CPS_0163 "Sec-independent prot	0.222	0.752	0.304	1.1e-05
TIGR_CMR|BA_2242	61	BA_2242 "twin-arginine translo	0.195	0.918	0.375	2.4e-05

UNIPROTKB|Q94G16 TATB "Sec-independent protein translocase protein TATB, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 136/222 (61%), Positives = 157/222 (70%)

Query:    62 TPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKS--VNLLEKKRRCKRGVFY 119
             TP S  K  +FHL +    LG  LF+ W+G K LG S  PK    + + KK RCK  V Y
Sbjct:    31 TPTSHSKIHHFHLYS----LGKRLFTPWNGFKQLGFSTKPKKPLFHFIGKKGRCKGKVVY 86

Query:   120 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLE 179
             ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLR FQPTIRE+QDVSREFKSTLE
Sbjct:    87 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLE 146

Query:   180 REIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYLKM 239
             REIG+DDI+   Q+  + N  +T  TP +   T +SQT  DPNG    +KAY+SEEYLK+
Sbjct:   147 REIGIDDITNPLQSTYSSNVRNTTPTPSATEITNNSQTAVDPNGKVDESKAYSSEEYLKI 206

Query:   240 TEEQLKASAAHQQEQ--SPQGESLSEPQTQPQDTAKETPSAV 279
             TEEQLKA AA QQEQ  SP+ + + E Q QP   A ET + V
Sbjct:   207 TEEQLKAVAAQQQEQTSSPKEDEI-EQQIQPP--ANETAATV 245

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IMP

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2156722 HCF106 "HIGH CHLOROPHYLL FLUORESCENCE 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 142/226 (62%), Positives = 162/226 (71%)

Query:    68 KTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGA 127
             K +  +LS+    LGSS FS + GLKHLGIS++PKS N  EKKRRCK  +  ASLFGVGA
Sbjct:    33 KASKPNLSSWFSLLGSSRFSPYIGLKHLGISISPKSSNP-EKKRRCKSMMIRASLFGVGA 91

Query:   128 PEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDI 187
             PEALVIGVVALLVFGPKGLAEVARNLGKTLR FQPTIRELQDVSR+FKSTLEREIGLDDI
Sbjct:    92 PEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDI 151

Query:   188 STSTQNPNNLNRTDTMSTPP-----SVTSTEDSQTVADPNGAASANKAYTSEEYLKMTEE 242
             ST   N  N NRT+ +  PP     SV STE   T  DPN + S  KAYTSE+YLK TEE
Sbjct:   152 STP--NVYNQNRTNPVQPPPPPPPPSVPSTEAPVTANDPNDSQSP-KAYTSEDYLKFTEE 208

Query:   243 QLKA-SAAHQQ-------EQSPQGESLSEP--QTQPQDTAKETPSA 278
             QLKA S A  Q       ++ PQ  ++  P  ++QP  TA+ET +A
Sbjct:   209 QLKALSPAESQTEDQTQTQEPPQPTTVQTPTGESQPNGTARETTAA 254

GO:0005886 "plasma membrane" evidence=ISM

GO:0008565 "protein transporter activity" evidence=IEA

GO:0009306 "protein secretion" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

UNIPROTKB|O48950 TATB "Sec-independent protein translocase protein TATB, chloroplastic" [Zea mays (taxid:4577)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 102/192 (53%), Positives = 124/192 (64%)

Query:    89 WSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAE 148
             W G++   I     S  +    R  +R V  ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct:    37 WKGVEWGSIQTRMVSSFVAVGSRTRRRNVICASLFGVGAPEALVIGVVALLVFGPKGLAE 96

Query:   149 VARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPS 208
             VARNLGKTLRAFQPTIRELQDVSREF+STLEREIG+D++S ST       R  TM+    
Sbjct:    97 VARNLGKTLRAFQPTIRELQDVSREFRSTLEREIGIDEVSQSTNY-----RPTTMNN--- 148

Query:   209 VTSTEDSQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQSPQGESLSEPQTQP 268
                  + Q  ADPN        YTSEE +K+TEEQ+ ASAA     +PQ  + S+ Q + 
Sbjct:   149 -----NQQPAADPN-VKPEPAPYTSEELMKVTEEQIAASAA--AAWNPQQPATSQQQEEA 200

Query:   269 QDT--AKETPSA 278
               T  +++ P++
Sbjct:   201 PTTPRSEDAPTS 212

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IMP;IDA

UNIPROTKB|Q9XH46 TATA "Sec-independent protein translocase protein TATA, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 152 (58.6 bits), Expect = 8.6e-11, P = 8.6e-11
 Identities = 44/116 (37%), Positives = 67/116 (57%)

Query:    69 TTNFHLSTTIP-QLGSSLFSQWSGLKHLGISVTPKSVNLLEKKR---RCKRGVFYASLFG 124
             T +   S+ IP +L +S  S +S L  L  +    S+ LL+K R   R  +G    + FG
Sbjct:     4 TLSISSSSVIPTRLPNS--SCYSNLSFLSSNSNTSSL-LLKKARIKTRTTKGFTCNAFFG 60

Query:   125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ-DVSREFKSTLE 179
             +G PE +VI  VA LVFGPK L EV R++G+T+++FQ   +E + ++ +E   T E
Sbjct:    61 LGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEE 116

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IMP

GO:0031361 "integral to thylakoid membrane" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2184241 AT5G28750 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:    77 TIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCK-----RGVFYASLFGVGAPEAL 131
             ++P L SS  S +S      ++  P + +L+   RR +     + +   +LFG+G PE  
Sbjct:    15 SLPLLSSSRSSFFSNC--FTVTTRPNTRSLVAIGRRIRQEPTRKPLTCNALFGLGVPELA 72

Query:   132 VIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTST 191
             VI  VA L+FGPK L E+ +++GKT+++FQ   +E +    E K+  E  +  +    +T
Sbjct:    73 VIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFES---ELKTEPEESVA-ESSQVAT 128

Query:   192 QNPNNLNRTDTMST 205
              N     +T+  S+
Sbjct:   129 SNKEEEKKTEVSSS 142

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009306 "protein secretion" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

UNIPROTKB|Q9XFJ8 TATA "Sec-independent protein translocase protein TATA, chloroplastic" [Zea mays (taxid:4577)]

 Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query:   122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
             LFG+G PE  VI  VA LVFGPK L E+ R++GKT+++FQ         ++EF++ L++E
Sbjct:    85 LFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSFQ-------QAAKEFETELKKE 137

Query:   182 IG 183
              G
Sbjct:   138 PG 139

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IMP

GO:0031361 "integral to thylakoid membrane" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IMP

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IMP

TIGR_CMR|GSU_0022 GSU_0022 "mttA/Hcf106 family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 121 (47.7 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 25/61 (40%), Positives = 42/61 (68%)

Query:   122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ-DVSREFKSTLER 180
             +FG+G PE +VI V+AL+V GP+ L ++AR+LGK L  F+    + Q +++ E ++  E+
Sbjct:     1 MFGIGMPELIVILVIALIVIGPQKLPDIARSLGKGLAEFKRASDDFQRNLAEEVRTLDEK 60

Query:   181 E 181
             E
Sbjct:    61 E 61

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|CHY_2570 CHY_2570 "twin-arginine translocation protein, TatA/E family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 109 (43.4 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query:   125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168
             +G PE L+I V+AL++FGP  L E+ R  GKT++ F+    E+Q
Sbjct:     5 IGIPELLIILVIALVIFGPAKLPEIGRAFGKTIKEFKKEATEIQ 48

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|CPS_0163 CPS_0163 "Sec-independent protein translocase protein TatA" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 84 (34.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:   124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIG 183
             G+G  + +++ V+ +L+FG K L  +  +LG  ++ F+  I E     +E K++ E+   
Sbjct:     3 GIGIWQLVIVAVIVVLLFGTKKLRNIGGDLGSAIKGFKSAIGE----DKEQKNSAEKTSD 58

Query:   184 -LDDISTST 191
              L D S ST
Sbjct:    59 TLADSSKST 67

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|BA_2242 BA_2242 "twin-arginine translocation protein, TatA/E family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 104 (41.7 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 21/56 (37%), Positives = 36/56 (64%)

Query:   125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
             +G P  ++I V  L++FGPK L E+ + LG+TL+ F+ + +EL D + + K   E+
Sbjct:     5 IGFPGLILILVAVLILFGPKKLPEIGKALGETLKEFKKSTKELTDDAFQEKEKKEK 60

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XH75	TATB_ARATH	No assigned EC number	0.5795	0.8501	0.9384	yes	no
Q94G16	TATB_PEA	No assigned EC number	0.5730	0.8675	0.9540	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XV3436 SubName- Full=Putative uncharacterized protein; (259 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam02416	53	pfam02416, MttA_Hcf106, mttA/Hcf106 family	1e-18
PRK14857	90	PRK14857, tatA, twin arginine translocase protein	9e-17
TIGR01411	47	TIGR01411, tatAE, twin arginine-targeting protein	9e-15
COG1826	94	COG1826, TatA, Sec-independent protein secretion p	1e-12
TIGR01410	80	TIGR01410, tatB, twin arginine-targeting protein t	4e-10
PRK14861	61	PRK14861, tatA, twin arginine translocase protein	4e-10
PRK14858	108	PRK14858, tatA, twin arginine translocase protein	6e-10
PRK01371	137	PRK01371, PRK01371, sec-independent translocase; P	8e-09
PRK14860	64	PRK14860, tatA, twin arginine translocase protein	2e-08
PRK00575	92	PRK00575, tatA, twin arginine translocase protein	2e-07
PRK04098	158	PRK04098, PRK04098, sec-independent translocase; P	5e-07
PRK14859	63	PRK14859, tatA, twin arginine translocase protein	9e-07
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	4e-05
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.001
PRK01919	169	PRK01919, tatB, sec-independent translocase; Provi	0.001
PRK00191	84	PRK00191, tatA, twin arginine translocase protein	0.002

>gnl|CDD|145520 pfam02416, MttA_Hcf106, mttA/Hcf106 family

 Score = 77.3 bits (191), Expect = 1e-18
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query: 125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKST 177
           +G PE L+I VVALL+FGPK L E+ R LGKTLR F+   +EL++   +    
Sbjct: 1   LGPPEWLIILVVALLLFGPKKLPELGRALGKTLREFKKATKELEEEDEKEAKD 53

Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif. Length = 53

>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional

 Score = 73.2 bits (180), Expect = 9e-17
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER-- 180
           FG+G PE  VI V+ALLVFGPK L E+ R+LGKTL+ FQ   +E +    E K  +    
Sbjct: 4   FGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFE---NEIKREMAEPE 60

Query: 181 EIGLDDISTSTQNPNNLNRTDTMSTPPSVT 210
           +         +   N  N+    +     +
Sbjct: 61  QEVKAPAELESNQTNEANQEQVDAENSPES 90

Length = 90

>gnl|CDD|213616 TIGR01411, tatAE, twin arginine-targeting protein translocase, TatA/E family

 Score = 66.9 bits (164), Expect = 9e-15
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169
           G+  PE L+I VV LL+FG K L E+ R+LGK ++ F+  ++E + 
Sbjct: 1   GLSPPEWLIILVVVLLLFGAKKLPELGRDLGKAIKEFKKAMKEEES 46

This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409 [Protein fate, Protein and peptide secretion and trafficking]. Length = 47

>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREI 182
           FG+G  E L+I VVALLVFGPK L E  R+LGK +R F+   +       + K+ L+ E+
Sbjct: 2   FGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFK---KAA----SDVKNELDEEL 54

Query: 183 GLDDISTSTQNPNNLNRTD 201
            L+++    +      +  
Sbjct: 55  KLEELDDKKKELTAELQAT 73

Length = 94

>gnl|CDD|130477 TIGR01410, tatB, twin arginine-targeting protein translocase TatB

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREI 182
           F +G  E L+I VVAL+V GP+ L    R +GK +R        L+ ++ + K+ L+ E+
Sbjct: 1   FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRR-------LRGMASDVKNELDEEL 53

Query: 183 GLDDISTSTQN 193
              ++    + 
Sbjct: 54  KAQELDEQLKK 64

This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 80

>gnl|CDD|237837 PRK14861, tatA, twin arginine translocase protein A; Provisional

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169
            +G P  ++I VVAL++FGPK L E+ + LGKTLR F+   +EL D
Sbjct: 4   NIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELTD 49

Length = 61

>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional

 Score = 55.3 bits (133), Expect = 6e-10
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD-VSREFKSTLER 180
           +FG+G PE +VI V+AL+V GP+ L ++AR+LG+ L  F+    + +  +  E ++  E+
Sbjct: 1   MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEK 60

Query: 181 EIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNGAASAN 228
           E       T  +      + +    P    + E   TVA   G  +  
Sbjct: 61  EKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGAKA 108

Length = 108

>gnl|CDD|179287 PRK01371, PRK01371, sec-independent translocase; Provisional

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREI 182
           FG+G  E +V+ V+A+LVFGP  L + AR+ G+TL       R+L++++   ++ L  E+
Sbjct: 2   FGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTL-------RQLREMANNARNDLRSEL 54

Query: 183 G 183
           G
Sbjct: 55  G 55

Length = 137

>gnl|CDD|184862 PRK14860, tatA, twin arginine translocase protein A; Provisional

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
           +FG G PE +VI V+AL+VFGP  L ++ + LG  +R F+    E   V+   +   E +
Sbjct: 1   MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNEEDVVTINNEKGKEDQ 60

Length = 64

>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 9/98 (9%)

Query: 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIG 183
            +      ++ VV +L+FG K L + AR+LGK+LR F+  ++E+Q  ++   S    +  
Sbjct: 3   SLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQSDNKAEASAAAAQAP 62

Query: 184 LDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADP 221
                     P  +             ++    T A P
Sbjct: 63  -----YQVATPTPV----QSQRVDPAAASGQDSTEARP 91

Length = 92

>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
           +FG+G  E LVI VVA++  GP  L +   ++ K  +A + TI +        KSTL++E
Sbjct: 1   MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDA-------KSTLDKE 53

Query: 182 IGLDDISTSTQN 193
           I +++I      
Sbjct: 54  INIEEIKEEALK 65

Length = 158

>gnl|CDD|184861 PRK14859, tatA, twin arginine translocase protein A; Provisional

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDV 170
           +FG+G PE +VI V+ L+VFG   L E+   LGK+++ F+    E +++
Sbjct: 1   MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSEKEEI 49

Length = 63

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARN----LGKTLRAFQPTIRELQDVSREFKST 177
           +FG+   E L++G+VALLV GP+ L   AR     +G+  R+F              K  
Sbjct: 1   MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFN-----------AIKQE 49

Query: 178 LEREIGLDDISTSTQNPNNLNRTD---TMSTPPSVTSTEDSQTVADPNGAASANKAYTSE 234
           +EREIG D+I     N + L+       +  P  +T     + V  P   + A    T  
Sbjct: 50  VEREIGADEIRRQLHNEHILSMEQEARKILAP--LTPPAPPEPVTPPTAQSPAPAVPTPP 107

Query: 235 EYLKMTEEQLKASAAHQQEQSPQGESLSEPQTQP 268
                      A+A      +P      +P   P
Sbjct: 108 PTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141

Length = 141

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 40/193 (20%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLE-- 179
           +F +G  E LVI +V ++V GPK       +L   LRAF      ++ ++ EF+   +  
Sbjct: 1   MFDIGWSELLVIAIVLIVVVGPK-------DLPPMLRAFGKMTARMRKMAGEFRRQFDEA 53

Query: 180 -REIGLDDISTSTQNPNNLN------------------------RTDTMSTPPSVTSTED 214
            RE  LDD+  +  +  +LN                        +  +MS P +     +
Sbjct: 54  LREAELDDVRQTISDARSLNPRTSLRQAMNPLRQAGNEIKSDLQKATSMSEPATENKPAE 113

Query: 215 SQTVADPNGAASANKAYTSEEYLKMTEEQLKASAAHQQEQSPQGESLSEPQT-QPQDTAK 273
             T  +P G      A                +AA     +P+  +    ++ +P   A 
Sbjct: 114 VTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAA-----APKAPAKPRAKSPRPAAKAA 168

Query: 274 ETPSAVPPPPKPK 286
             P+      K K
Sbjct: 169 PKPTETITAKKAK 181

Length = 209

>gnl|CDD|234992 PRK01919, tatB, sec-independent translocase; Provisional

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 9/54 (16%)

Query: 133 IGVVALLVFGPKGLAEVARNLGKTL-RAFQPTIRELQDVSREFKSTLEREIGLD 185
           IGVVAL+V GP+ L  VAR  G    RA Q   R + DV    K+ + REI LD
Sbjct: 12  IGVVALVVIGPERLPRVARTAGALFGRA-Q---RYINDV----KAEVSREIELD 57

Length = 169

>gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 13/45 (28%), Positives = 30/45 (66%)

Query: 125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169
           +G  E  +I ++ +++FG K L + AR++G+++R F+  ++E+  
Sbjct: 3   LGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSK 47

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PRK01770	171	sec-independent translocase; Provisional	99.9
PRK04654	214	sec-independent translocase; Provisional	99.83
PRK00404	141	tatB sec-independent translocase; Provisional	99.8
PRK00708	209	sec-independent translocase; Provisional	99.8
TIGR01410	80	tatB twin arginine-targeting protein translocase T	99.77
PRK14857	90	tatA twin arginine translocase protein A; Provisio	99.75
PRK01919	169	tatB sec-independent translocase; Provisional	99.75
PRK04098	158	sec-independent translocase; Provisional	99.75
PRK14858	108	tatA twin arginine translocase protein A; Provisio	99.74
PRK03100	136	sec-independent translocase; Provisional	99.73
PRK00182	160	tatB sec-independent translocase; Provisional	99.73
COG1826	94	TatA Sec-independent protein secretion pathway com	99.72
PRK01371	137	sec-independent translocase; Provisional	99.7
PRK14861	61	tatA twin arginine translocase protein A; Provisio	99.66
PRK14859	63	tatA twin arginine translocase protein A; Provisio	99.66
PRK14860	64	tatA twin arginine translocase protein A; Provisio	99.65
PRK00575	92	tatA twin arginine translocase protein A; Provisio	99.62
PF02416	53	MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR0033	99.61
PRK03625	67	tatE twin arginine translocase protein E; Validate	99.6
TIGR01411	47	tatAE twin arginine-targeting protein translocase,	99.6
PRK01833	74	tatA twin arginine translocase protein A; Provisio	99.58
PRK00191	84	tatA twin arginine translocase protein A; Provisio	99.57
PRK04598	81	tatA twin arginine translocase protein A; Provisio	99.55
PRK02958	73	tatA twin arginine translocase protein A; Provisio	99.55
PRK01470	51	tatA twin arginine translocase protein A; Provisio	99.54
PRK01614	85	tatE twin arginine translocase protein A; Validate	99.53
PRK04561	75	tatA twin arginine translocase protein A; Provisio	99.53
PRK03554	89	tatA twin arginine translocase protein A; Provisio	99.52
PRK00442	92	tatA twin arginine translocase protein A; Provisio	99.5
PRK00720	78	tatA twin arginine translocase protein A; Provisio	99.47

>PRK01770 sec-independent translocase; Provisional

Probab=99.90  E-value=1e-24  Score=190.80  Aligned_cols=102  Identities=21%  Similarity=0.368  Sum_probs=89.1

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCCCCCCC
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD  201 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek~nl~n  201 (287)
                      ||||||+||+||+||+||||||+|||+++|++|+|+|+||++++       ++++++++|++++|+++.+++..+.++.+
T Consensus         1 MF~IG~~ELllI~vVaLlV~GPerLP~~~r~lg~~i~~~R~~~~-------~~k~e~~~E~~~~El~~~l~~~~~~~~~~   73 (171)
T PRK01770          1 MFDIGFSELLLVFVIGLVVLGPQRLPVAVKTVAGWIRALRSLAT-------TVQNELTQELKLQELQDSLKKVEKASLTN   73 (171)
T ss_pred             CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHhhHhh
Confidence            99999999999999999999999999999999999999999885       56788999999999999999988888888


Q ss_pred             CCCCCCCCCccccccCcCCCCCcccccccCChHHhh
Q 023111          202 TMSTPPSVTSTEDSQTVADPNGAASANKAYTSEEYL  237 (287)
Q Consensus       202 ~s~~els~s~~El~~~a~~~~~A~s~~~py~sed~~  237 (287)
                      +.+ ++..+++++      ++.+.++.++|...+..
T Consensus        74 l~~-el~~~~~e~------~~~~~~~~~~~~~~~~~  102 (171)
T PRK01770         74 LSP-ELKASVDEL------KQAAESMKRSYAANDPE  102 (171)
T ss_pred             hhH-HHHHHHHHH------HHHHhhhcccccccCcc
Confidence            877 788888888      66666666777655443

>PRK04654 sec-independent translocase; Provisional

Probab=99.83  E-value=6.4e-22  Score=178.28  Aligned_cols=92  Identities=28%  Similarity=0.399  Sum_probs=77.2

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCCCCCCC
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD  201 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek~nl~n  201 (287)
                      ||||||+|||||+||+||||||+|||+++|++|+|+|+||++++       ++++++++|++++|+++.+++... .+++
T Consensus         1 MFgIG~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~-------~vk~El~~El~~~ELrk~l~~~~~-~i~~   72 (214)
T PRK04654          1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWD-------SVKQELERELEAEELKRSLQDVQA-SLRE   72 (214)
T ss_pred             CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHH-HHHH
Confidence            99999999999999999999999999999999999999998764       677888888999999998887643 4555


Q ss_pred             CCCCCCCCCccccccCcCCCCCccccc
Q 023111          202 TMSTPPSVTSTEDSQTVADPNGAASAN  228 (287)
Q Consensus       202 ~s~~els~s~~El~~~a~~~~~A~s~~  228 (287)
                      ... +++.+++++      ++++.+++
T Consensus        73 ~~~-~lk~~~~el------~q~a~~~~   92 (214)
T PRK04654         73 AED-QLRNTQQQV------EQGARALH   92 (214)
T ss_pred             HHH-HHHHHHHHH------HHHHHHhh
Confidence            555 777788888      55555554

>PRK00404 tatB sec-independent translocase; Provisional

Probab=99.80  E-value=1.8e-20  Score=160.16  Aligned_cols=66  Identities=38%  Similarity=0.660  Sum_probs=61.2

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCC
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP  194 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqda  194 (287)
                      ||||||+||+||+||+||||||+|||+++|++|+|+++||++++       ++++++++|++++|+|+.+++.
T Consensus         1 MF~IG~~ELlvI~VVaLlV~GPkkLP~laR~lG~~i~~~rr~~~-------~~k~ei~~E~~~~elr~~l~~~   66 (141)
T PRK00404          1 MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFN-------AIKQEVEREIGADEIRRQLHNE   66 (141)
T ss_pred             CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998774       5677899999999999988863

>PRK00708 sec-independent translocase; Provisional

Probab=99.80  E-value=2.4e-20  Score=167.70  Aligned_cols=73  Identities=34%  Similarity=0.619  Sum_probs=61.1

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCCCC
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLN  198 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek~n  198 (287)
                      ||||||+|||||+||+||||||+|||+++|++|+|+++||++++++++   +|++++ ++.+++|+++.+++.++++
T Consensus         1 MFdIG~~ELlvI~vVaLvV~GPkrLP~~~R~lGk~v~k~R~~a~e~r~---~~~e~~-~~~eldd~~k~~~~~~~ld   73 (209)
T PRK00708          1 MFDIGWSELLVIAIVLIVVVGPKDLPPMLRAFGKMTARMRKMAGEFRR---QFDEAL-REAELDDVRQTISDARSLN   73 (209)
T ss_pred             CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh-hhhhHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999987663   343433 3456788888887765543

>TIGR01410 tatB twin arginine-targeting protein translocase TatB

Probab=99.77  E-value=2.4e-19  Score=139.61  Aligned_cols=72  Identities=29%  Similarity=0.528  Sum_probs=62.9

Q ss_pred             cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCCCCCCC
Q 023111          123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD  201 (287)
Q Consensus       123 FgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek~nl~n  201 (287)
                      |||||+||+||+||+||||||+|||+++|++|+++++||++++       +++++++++++.+|+++.+++.++.+..|
T Consensus         1 f~ig~~EllvI~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~-------~~~~~~~~e~~~~el~~~~~~~~~~~~~~   72 (80)
T TIGR01410         1 FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRRLRGMAS-------DVKNELDEELKAQELDEQLKKAQQLRFLN   72 (80)
T ss_pred             CCCcHHHHHHHHHHHHheECchHHHHHHHHHHHHHHHHHHhhH-------hHHHHHHHHhchHhHHHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999885       56677888888999998887665544444

This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.

>PRK14857 tatA twin arginine translocase protein A; Provisional

Probab=99.75  E-value=2.2e-18  Score=137.79  Aligned_cols=49  Identities=55%  Similarity=0.949  Sum_probs=46.3

Q ss_pred             ccccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111          120 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (287)
Q Consensus       120 ~~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq  168 (287)
                      |.||||||+||+||+||+||||||+|||+++|++|+++|+||+++++++
T Consensus         1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~   49 (90)
T PRK14857          1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFE   49 (90)
T ss_pred             CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999999999999887654

>PRK01919 tatB sec-independent translocase; Provisional

Probab=99.75  E-value=8e-19  Score=153.78  Aligned_cols=65  Identities=35%  Similarity=0.584  Sum_probs=58.3

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcC
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQN  193 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqd  193 (287)
                      ||||||+||+||+||+||||||+|||+++|++|+++++||++++       ++++++++|++++|+++..++
T Consensus         1 MFdIG~~ElliI~VVALiV~GPekLP~~aRtlGk~i~k~Rr~~~-------d~K~ev~~E~e~dElrk~~~~   65 (169)
T PRK01919          1 MIDLGLSKLALIGVVALVVIGPERLPRVARTAGALFGRAQRYIN-------DVKAEVSREIELDELRKMKTD   65 (169)
T ss_pred             CCCCcHHHHHHHHHHHHheeCchHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999985       566778888888888875443

>PRK04098 sec-independent translocase; Provisional

Probab=99.75  E-value=1.2e-18  Score=151.25  Aligned_cols=66  Identities=36%  Similarity=0.598  Sum_probs=60.1

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCC
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP  194 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqda  194 (287)
                      |||||||||+||+|||||||||+|||+++|++|+|+|.||++++       +++++++++++++|+++.+++.
T Consensus         1 MfgiG~~EllvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~-------~~k~~l~~Ei~~~elk~e~~k~   66 (158)
T PRK04098          1 MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTIN-------DAKSTLDKEINIEEIKEEALKY   66 (158)
T ss_pred             CCCCcHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999885       4667788888889998877654

>PRK14858 tatA twin arginine translocase protein A; Provisional

Probab=99.74  E-value=1.8e-18  Score=142.38  Aligned_cols=64  Identities=36%  Similarity=0.714  Sum_probs=53.1

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhc
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQ  192 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lq  192 (287)
                      ||||||+||+||+||+||||||+|||+++|++|+++|+||+++++       ++++++++++..|+++..+
T Consensus         1 MF~iG~~ElliIlvVallvfGPkKLPelar~lGk~i~~fk~~~~d-------~k~~i~~E~~~~e~~~~~~   64 (108)
T PRK14858          1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDD-------FKQSMQEESRTAEEKEKAE   64 (108)
T ss_pred             CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHH
Confidence            899999999999999999999999999999999999999999865       4455555555555554443

>PRK03100 sec-independent translocase; Provisional

Probab=99.73  E-value=2.2e-18  Score=146.47  Aligned_cols=70  Identities=23%  Similarity=0.386  Sum_probs=58.8

Q ss_pred             cc-CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCCC
Q 023111          122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNN  196 (287)
Q Consensus       122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdaek  196 (287)
                      || ||||+||+||+||+||||||+|||+++|++|+|+|+||+++++++   +++++|+.  .+++|+++.+++..+
T Consensus         1 Mf~~iG~~EllvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R~~~~~~~---~~~~~elg--~e~~dlrk~l~el~~   71 (136)
T PRK03100          1 MFANIGWGEMLVLVVAGLVILGPERLPGAIRWTARALRQARDYASGAT---SQLREELG--PEFDDLRKPLGELQK   71 (136)
T ss_pred             CcccccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh--hhHHHHHHHHHHHHH
Confidence            78 699999999999999999999999999999999999999987655   34555554  457899987765544

>PRK00182 tatB sec-independent translocase; Provisional

Probab=99.73  E-value=5.6e-18  Score=147.43  Aligned_cols=69  Identities=22%  Similarity=0.413  Sum_probs=57.5

Q ss_pred             cc-CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchhhhcCCC
Q 023111          122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPN  195 (287)
Q Consensus       122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk~lqdae  195 (287)
                      || ||||+||+||+||+||||||+|||+++|++|+++|+||+++++++   +++++|+.  .+++|+|+.+++..
T Consensus         1 MF~~IG~~EllvIlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k---~el~~Elg--~e~~elrk~l~~l~   70 (160)
T PRK00182          1 MFSSVGWGEILLLLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAK---QQLDGDFG--EEFDEFRKPLNQIA   70 (160)
T ss_pred             CcccccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh--hHHHHHHHHHHHHH
Confidence            78 599999999999999999999999999999999999999987544   33444444  24789999888643

>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]

Probab=99.72  E-value=9.2e-18  Score=133.17  Aligned_cols=47  Identities=51%  Similarity=0.898  Sum_probs=44.3

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq  168 (287)
                      ||+||||||+||+||+||||||+|||+++|++|+++|+||+++++.+
T Consensus         1 M~~ig~~elliIlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~~~   47 (94)
T COG1826           1 MFGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFKKAASDVK   47 (94)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhhhH
Confidence            88999999999999999999999999999999999999999886543

>PRK01371 sec-independent translocase; Provisional

Probab=99.70  E-value=8e-17  Score=137.25  Aligned_cols=56  Identities=38%  Similarity=0.705  Sum_probs=50.6

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHh
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER  180 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsEler  180 (287)
                      ||||||+||+||+||+||||||+|||+++|++|+++|+||+++++++   +++++|+..
T Consensus         1 MfgIG~~EllvIlvVallvfGPeKLP~~ar~lg~~ir~~R~~~~~ak---~~i~~Elg~   56 (137)
T PRK01371          1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNAR---NDLRSELGP   56 (137)
T ss_pred             CCCccHHHHHHHHHHHhheeCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcc
Confidence            89999999999999999999999999999999999999999998765   456666653

>PRK14861 tatA twin arginine translocase protein A; Provisional

Probab=99.66  E-value=1.3e-16  Score=119.62  Aligned_cols=48  Identities=46%  Similarity=0.789  Sum_probs=44.6

Q ss_pred             cccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111          121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (287)
Q Consensus       121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq  168 (287)
                      +|+||||+|+++|++|+||||||+|||+++|++|+++|+||+++++++
T Consensus         1 M~~~ig~~ElliI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~~~~~~   48 (61)
T PRK14861          1 MFSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELT   48 (61)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366899999999999999999999999999999999999999887655

>PRK14859 tatA twin arginine translocase protein A; Provisional

Probab=99.66  E-value=4e-17  Score=123.24  Aligned_cols=45  Identities=42%  Similarity=0.832  Sum_probs=43.5

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e  166 (287)
                      |||||++||+||++|+||||||+|||+++|++|+++|+||+++++
T Consensus         1 MfgiG~~ElliIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~~~   45 (63)
T PRK14859          1 MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSE   45 (63)
T ss_pred             CCCccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999998764

>PRK14860 tatA twin arginine translocase protein A; Provisional

Probab=99.65  E-value=6.6e-17  Score=122.43  Aligned_cols=45  Identities=44%  Similarity=0.840  Sum_probs=43.3

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e  166 (287)
                      ||||||+||+||++|+||||||+|||+++|++|+++|+||+++++
T Consensus         1 MfgiG~~ElliI~vIalllfGp~kLP~l~r~lGk~ir~fkk~~~~   45 (64)
T PRK14860          1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNE   45 (64)
T ss_pred             CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHccc
Confidence            899999999999999999999999999999999999999998764

>PRK00575 tatA twin arginine translocase protein A; Provisional

Probab=99.62  E-value=3.4e-16  Score=125.95  Aligned_cols=47  Identities=36%  Similarity=0.646  Sum_probs=44.0

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq  168 (287)
                      |||||+|||+||+||+||||||+|||+++|++|+++|+||+.+++++
T Consensus         1 m~~iG~~ElliIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~~~~~   47 (92)
T PRK00575          1 MGSLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQ   47 (92)
T ss_pred             CCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            89999999999999999999999999999999999999998876543

>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism

Probab=99.61  E-value=9e-16  Score=111.54  Aligned_cols=45  Identities=56%  Similarity=0.928  Sum_probs=40.4

Q ss_pred             CChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 023111          125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (287)
Q Consensus       125 IG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd  169 (287)
                      ||++||+||+||+||||||+|||+++|++|+++|+||++++++++
T Consensus         1 ig~~El~iI~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~   45 (53)
T PF02416_consen    1 IGFPELLIILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKE   45 (53)
T ss_dssp             S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            699999999999999999999999999999999999999876653

This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.

>PRK03625 tatE twin arginine translocase protein E; Validated

Probab=99.60  E-value=6.7e-16  Score=117.87  Aligned_cols=46  Identities=22%  Similarity=0.505  Sum_probs=43.5

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~el  167 (287)
                      |||||||||+||++|+||||||+|||+++|++|+++|.||+.+++.
T Consensus         1 M~~ig~~elliIlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~   46 (67)
T PRK03625          1 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDD   46 (67)
T ss_pred             CCCCcHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999877643

>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family

Probab=99.60  E-value=8.8e-16  Score=109.63  Aligned_cols=45  Identities=44%  Similarity=0.805  Sum_probs=42.2

Q ss_pred             CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHh
Q 023111          124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (287)
Q Consensus       124 gIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elq  168 (287)
                      |||++|+++|++|+|+||||+|||+++|++|+++|+||+++++.+
T Consensus         1 gig~~ElliI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~~~~~~   45 (47)
T TIGR01411         1 GLSPPEWLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKEEE   45 (47)
T ss_pred             CCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhhccc
Confidence            689999999999999999999999999999999999999887543

This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.

>PRK01833 tatA twin arginine translocase protein A; Provisional

Probab=99.58  E-value=1.4e-15  Score=118.21  Aligned_cols=46  Identities=24%  Similarity=0.515  Sum_probs=43.5

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~el  167 (287)
                      |||||+|||+||++|+||+|||+|||+++|++|+++|+||+.+++.
T Consensus         1 m~g~g~~elliIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~~~   46 (74)
T PRK01833          1 MGGISIWQLLIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMADD   46 (74)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999887643

>PRK00191 tatA twin arginine translocase protein A; Provisional

Probab=99.57  E-value=2.5e-15  Score=119.30  Aligned_cols=47  Identities=28%  Similarity=0.640  Sum_probs=43.5

Q ss_pred             cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 023111          123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (287)
Q Consensus       123 FgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd  169 (287)
                      +||||+||+||+||+||||||+|||+++|++|+++|+||+.++++++
T Consensus         1 m~ig~~ElliI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~~~~~~   47 (84)
T PRK00191          1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSK   47 (84)
T ss_pred             CCCcHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            48999999999999999999999999999999999999998876543

>PRK04598 tatA twin arginine translocase protein A; Provisional

Probab=99.55  E-value=2.9e-15  Score=118.17  Aligned_cols=45  Identities=29%  Similarity=0.614  Sum_probs=43.0

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e  166 (287)
                      |||+|+|||+||+||+||||||+|||+++|++|+++|+||+.+++
T Consensus         1 m~glg~~elliIlvivlllFG~kKLPelg~~lGk~i~~FKk~~~~   45 (81)
T PRK04598          1 MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMSE   45 (81)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence            899999999999999999999999999999999999999987754

>PRK02958 tatA twin arginine translocase protein A; Provisional

Probab=99.55  E-value=4e-15  Score=115.37  Aligned_cols=46  Identities=26%  Similarity=0.457  Sum_probs=43.4

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~el  167 (287)
                      |+++|+|||+||++|+||||||+|||+++|++|+++|+||+.+++.
T Consensus         1 mg~~g~~elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~   46 (73)
T PRK02958          1 MGSFSIWHWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEG   46 (73)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence            7899999999999999999999999999999999999999877653

>PRK01470 tatA twin arginine translocase protein A; Provisional

Probab=99.54  E-value=4.3e-15  Score=108.22  Aligned_cols=44  Identities=25%  Similarity=0.574  Sum_probs=41.4

Q ss_pred             cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111          123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (287)
Q Consensus       123 FgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e  166 (287)
                      .|||++||+||++|+||||||+|||+++|++|+++|+||+.+++
T Consensus         1 mgig~~elliI~vi~llvFGp~KLP~l~r~lG~~i~~Fk~~~~~   44 (51)
T PRK01470          1 MGMSFSHLLIVLLIIFVLFGAGKLPQVMSDLAKGLKAFKDGMKD   44 (51)
T ss_pred             CCCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhcc
Confidence            37999999999999999999999999999999999999987754

>PRK01614 tatE twin arginine translocase protein A; Validated

Probab=99.53  E-value=4.4e-15  Score=118.05  Aligned_cols=45  Identities=29%  Similarity=0.669  Sum_probs=42.8

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e  166 (287)
                      |||||+|||+||+||+||+|||+|||+++|++|+.+|+||+.+++
T Consensus         1 M~GlG~~ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e   45 (85)
T PRK01614          1 MEGLSITKLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRN   45 (85)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence            899999999999999999999999999999999999999987653

>PRK04561 tatA twin arginine translocase protein A; Provisional

Probab=99.53  E-value=5e-15  Score=115.53  Aligned_cols=45  Identities=31%  Similarity=0.495  Sum_probs=43.0

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e  166 (287)
                      |+++|+|||+||++|+||||||+|||+++|++|++++.||+.+++
T Consensus         1 Mgg~s~~ellIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e   45 (75)
T PRK04561          1 MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHD   45 (75)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            889999999999999999999999999999999999999987764

>PRK03554 tatA twin arginine translocase protein A; Provisional

Probab=99.52  E-value=8.3e-15  Score=117.41  Aligned_cols=44  Identities=27%  Similarity=0.628  Sum_probs=42.1

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR  165 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~  165 (287)
                      |||+|+|||+||+||+||||||+|||+++|.+|+++|+||+.++
T Consensus         1 M~glG~~eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~   44 (89)
T PRK03554          1 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS   44 (89)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhc
Confidence            88999999999999999999999999999999999999998664

>PRK00442 tatA twin arginine translocase protein A; Provisional

Probab=99.50  E-value=1.1e-14  Score=117.22  Aligned_cols=45  Identities=29%  Similarity=0.478  Sum_probs=42.6

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e  166 (287)
                      |+++|+|||+||++|+||||||+|||+++|.+|+++|+||+.+++
T Consensus         1 Mg~~g~~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e   45 (92)
T PRK00442          1 MGIFDWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNE   45 (92)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc
Confidence            889999999999999999999999999999999999999987653

>PRK00720 tatA twin arginine translocase protein A; Provisional

Probab=99.47  E-value=3.3e-14  Score=111.55  Aligned_cols=45  Identities=20%  Similarity=0.382  Sum_probs=42.7

Q ss_pred             ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHH
Q 023111          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (287)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~e  166 (287)
                      ||++|+|||+||+||+||+|||+|||+++|++|++++.||+.+++
T Consensus         1 Mgg~g~~ellIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~   45 (78)
T PRK00720          1 MGSFSIWHWLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMAD   45 (78)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence            899999999999999999999999999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
2l16_A	78	SEC-independent protein translocase protein tatad;	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis} Length = 78

 Score = 74.6 bits (183), Expect = 2e-17
 Identities = 19/77 (24%), Positives = 38/77 (49%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
              +G P  ++I V+AL++FGP  L E+ R  G+TL  F+   + L     + + + E  
Sbjct: 2   FSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEKSAELT 61

Query: 182 IGLDDISTSTQNPNNLN 198
               D +   ++ ++ +
Sbjct: 62  AVKQDKNAGLEHHHHHH 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 2e-10
 Identities = 43/257 (16%), Positives = 89/257 (34%), Gaps = 67/257 (26%)

Query: 46  SYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLK-HLGISV----- 99
            Y   R  +Y+ +      +  +   +       +L  +L      L+    + +     
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYL------KLRQALLE----LRPAKNVLIDGVLG 160

Query: 100 TPKSV----NLLEKKRRCKR--GVFYASLFGVGAPEALVIGVVALLV-FGPKG--LAEVA 150
           + K+       L  K +CK    +F+ +L    +PE ++  +  LL    P     ++ +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD----TMSTP 206
            N+   + + Q  +R L   S+ +++ L   + L ++    QN    N  +     +   
Sbjct: 221 SNIKLRIHSIQAELRRLL-KSKPYENCL---LVLLNV----QNAKAWNAFNLSCKIL--- 269

Query: 207 PSVTSTEDSQTVADPNGAASA--------NKAYTSEE-------YLKMTEEQLKASAAHQ 251
             +T T   Q V D   AA+         +   T +E       YL    + L       
Sbjct: 270 --LT-TRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--- 322

Query: 252 QEQSPQ-----GESLSE 263
              +P+      ES+ +
Sbjct: 323 LTTNPRRLSIIAESIRD 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
2l16_A	78	SEC-independent protein translocase protein tatad;	99.76

>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}

Probab=99.76  E-value=2.6e-19  Score=138.33  Aligned_cols=62  Identities=32%  Similarity=0.571  Sum_probs=46.8

Q ss_pred             cccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhhcCcccchh
Q 023111          121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDIST  189 (287)
Q Consensus       121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaRtlGK~IR~fR~~~~elqd~s~e~KsElerEieleELrk  189 (287)
                      +|||||+|||+||+||+||||||+|||+++|++|+++|+||+++++++       ++.+++.+.+|+++
T Consensus         1 MMf~ig~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~-------~e~~~~~~~~el~~   62 (78)
T 2l16_A            1 MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLV-------SGDEKEEKSAELTA   62 (78)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHH-------HCCC----------
T ss_pred             CCCCCCHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhH-------hhhhHHhhHHHHHH
Confidence            489999999999999999999999999999999999999999987544       44444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00