Citrus Sinensis ID: 023115

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQRDARHLYGATTSS
Secondary Structure (PSIPRED)
cccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccc
Coil and Loop (DISEMBL)
MSVLPSSIVTFLSSAAairngdnnnsdgeSFQKFFESWLVEQNQHLQALISASkqqennssssnfEEQVRVVVEHYEQYYRAKSRWVKLDVLgmltpswrssledsflwiggwrpsmAFHLLYSKSGLQLEGKLHDLIRglssgdlgdlsptqltrvdGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELmstnddrqdsdrrlmdDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDwgkqrdarhlygattss
Flexible Loop (DISEMBL)
MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKqqennssssnfeeQVRVVVEHYEQYYraksrwvkldVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSsgdlgdlsptqltrvdglqrvIIKEEKDLSEKLAKYQEtvadsslvELSHVVTElmstnddrqdsdrrlmddqiesnfvtkeaklEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQRDARHLYGATTSS
Low Complexity Region (SEG)
MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALIsaskqqennssssnfeeqVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQRDARHLYGATTSS
Disordered region (IsUnstruct)
*******************************QKFFESWLVEQNQHL**********************VRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKE*******************LVELSHVV*************************FVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQRDARHL*******
Disordered Region (DISOPRED)
********************************KFFESWLVEQNQHLQALISA***********NFEEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQ*******************LSPTQLTRVDGLQRVIIK**KDLSEKLAKYQETVADSSLVEL********************************KEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDW****************
Disordered Region (DISEMBL)
MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALIS**************EEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQRDARHLYGATTSS
Disordered Region (DISPRO)
*************************SDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTEL*************LMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQ*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQRDARHLYGATTSS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
P43273	330	Transcription factor TGA2	no	no	0.717	0.624	0.258	3e-12
O24160	456	TGACG-sequence-specific D	N/A	no	0.780	0.491	0.255	5e-12
Q41558	476	Transcription factor HBP-	N/A	no	0.696	0.420	0.257	9e-12
Q39140	330	Transcription factor TGA6	no	no	0.721	0.627	0.252	2e-11
Q39163	330	Transcription factor TGA5	no	no	0.763	0.663	0.263	2e-11
Q93ZE2	368	Transcription factor TGA7	no	no	0.700	0.546	0.254	4e-11
Q39162	364	Transcription factor TGA4	no	no	0.724	0.571	0.269	9e-11
Q39237	368	Transcription factor TGA1	no	no	0.759	0.592	0.272	2e-10
Q39234	384	Transcription factor TGA3	no	no	0.773	0.578	0.255	2e-10
P23923	332	Transcription factor HBP-	N/A	no	0.749	0.647	0.248	2e-09

>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 53/259 (20%)

Query: 21  GDNNNSDGESFQKFFES----WLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVE-- 74
           GD  +S G +    F++    WL E+N+ +  L SA      +S       ++R++V+  
Sbjct: 100 GDQAHSTGGNGALAFDAEHSRWLEEKNKQMNELRSALNAHAGDS-------ELRIIVDGV 152

Query: 75  --HYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEG 132
             HYE+ +R KS   K DV  +L+  W++  E  FLW+GG+R S    LL +    QLE 
Sbjct: 153 MAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLAN----QLE- 207

Query: 133 KLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSH 192
                           ++  QL  ++ LQ+   + E  LS+ +   Q+++AD+       
Sbjct: 208 ---------------PMTERQLMGINNLQQTSQQAEDALSQGMESLQQSLADTLSSGTLG 252

Query: 193 VVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPI 252
             +     +   Q            +  + K   LE    +AD+LRL+T + +I +LT  
Sbjct: 253 SSSSGNVASYMGQ-----------MAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTTR 301

Query: 253 QAVHFLIAAAELHLRLHDW 271
           Q+   L+A       +HD+
Sbjct: 302 QSARALLA-------IHDY 313

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity.
Arabidopsis thaliana (taxid: 3702)

>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 34/258 (13%)

Query: 11  FLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVR 70
           ++S+ A   NG   N    +F   +  WL E N+H+  L +A      ++S       V 
Sbjct: 217 YISNIADQSNGVGANGP-LAFDAEYSRWLEEHNKHINELRTAVNA---HASDPELRSIVN 272

Query: 71  VVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQL 130
            V  H+++ +R K    K DV  +L+  W++  E  F+WIGG+RPS    LL +    QL
Sbjct: 273 NVTAHFDEVFRVKGNAAKADVFHVLSGMWKTPAERCFMWIGGFRPSELLKLLVN----QL 328

Query: 131 EGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVEL 190
           E                 L+  QL  +  LQ+   + E  LS+ +   Q+++A++    L
Sbjct: 329 E----------------PLTEQQLAGIYNLQQSSHQAEDALSQGMEALQQSLAET----L 368

Query: 191 SHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILT 250
           ++       ++ D  +   ++      +  + K   LE    +AD+LR +T + +  +LT
Sbjct: 369 ANGSPAPEGSSGDVANYMGQM------AMAMGKLGTLEGFLRQADNLRQQTLQQMHRVLT 422

Query: 251 PIQAVHFLIAAAELHLRL 268
             Q+   L+A  E   RL
Sbjct: 423 TRQSARALLAINEYFSRL 440

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Nicotiana tabacum (taxid: 4097)

>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 45/245 (18%)

Query: 30  SFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKL 89
           +F   +  WL E N+H+  L +A+     ++   +  + V  ++  Y++++R K    K 
Sbjct: 258 AFDMEYARWLEEHNKHINELRAAANA---HAGDDDLRKIVDSIMSQYDEFFRLKGVAAKA 314

Query: 90  DVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDL 149
           DV  +L+  W++  E  F+W+GG+R S    LL                    +G L  L
Sbjct: 315 DVFHVLSGMWKTPAERCFMWLGGFRSSELLKLL--------------------AGQLEPL 354

Query: 150 SPTQLTRVDGLQRVIIKEEKDLSEKLAKYQ----ETVADSSLVEL--SHVVTELMSTNDD 203
           +  QLT +  LQ+   + E  LS+ +   Q    ET+A  SL     S  V   M     
Sbjct: 355 TEQQLTGICNLQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVASYMGQ--- 411

Query: 204 RQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAE 263
                         +  + K   LE    +AD+LRL+T + +  ILT  Q+   L+A ++
Sbjct: 412 -------------MAMAMGKLGTLENFLRQADNLRLQTLQQMQRILTTRQSARALLAISD 458

Query: 264 LHLRL 268
              RL
Sbjct: 459 YFSRL 463

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 66/273 (24%)

Query: 11  FLSSAAAIRNGDNNNSDGESFQKFFES----WLVEQNQHLQALISASKQQENNSSSSNFE 66
           F+SS+     GD  +S G +    F++    WL E+N+ +  L SA      N+ + + E
Sbjct: 95  FISSS-----GDQAHSTGGNGALAFDAEHSRWLEEKNRQMNELRSAL-----NAHAGDTE 144

Query: 67  EQVRV--VVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYS 124
            ++ V  V+ HYE+ +R KS   K DV  +L+  W++  E  FLW+GG+R S    LL +
Sbjct: 145 LRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLAN 204

Query: 125 KSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVAD 184
               QLE                 ++  Q+  ++ LQ+   + E  LS+ +   Q+++AD
Sbjct: 205 ----QLE----------------PMTERQVMGINSLQQTSQQAEDALSQGMESLQQSLAD 244

Query: 185 SSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNF------VTKEAKLEEIFHKADDLR 238
           +         +                  D + S        + +   LE    +AD+LR
Sbjct: 245 TLSSGTLGSSSS-----------------DNVASYMGQMAMAMGQLGTLEGFIRQADNLR 287

Query: 239 LKTFKAVIDILTPIQAVHFLIAAAELHLRLHDW 271
           L+T + ++ +LT  Q+   L+A       +HD+
Sbjct: 288 LQTLQQMLRVLTTRQSARALLA-------IHDY 313

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39163|TGA5_ARATH Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 43/262 (16%)

Query: 11  FLSSAAAIRNGDNNNS---DGE-SFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFE 66
           F+SS+     GD  +S   DG  +F   +  W  ++N+ ++ L SA    +++++ S   
Sbjct: 95  FISSS-----GDQAHSTAGDGAMAFDVEYRRWQEDKNRQMKELSSAI---DSHATDSELR 146

Query: 67  EQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKS 126
             V  V+ HYE+ YR K    K DV  +L+  W++  E  FLW+GG+R S    L+ S  
Sbjct: 147 IIVDGVIAHYEELYRIKGNAAKSDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLIAS-- 204

Query: 127 GLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSS 186
             QLE                 L+  Q   ++ LQ+   + E  LS+ +   Q+++AD+ 
Sbjct: 205 --QLE----------------PLTEQQSLDINNLQQSSQQAEDALSQGMDNLQQSLADTL 246

Query: 187 LVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVI 246
                   +     +   Q            +  + K   LE    +AD+LRL+T++ ++
Sbjct: 247 SSGTLGSSSSGNVASYMGQ-----------MAMAMGKLGTLEGFIRQADNLRLQTYQQMV 295

Query: 247 DILTPIQAVHFLIAAAELHLRL 268
            +LT  Q+   L+A     LRL
Sbjct: 296 RLLTTRQSARALLAVHNYTLRL 317

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 47/248 (18%)

Query: 25  NSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKS 84
           N+   SF+  +  WL EQ++ +  L +A    +++ S    +  V   + HY   ++ KS
Sbjct: 149 NTGIASFEMEYSHWLQEQSRRVSELRTAL---QSHISDIELKMLVESCLNHYANLFQMKS 205

Query: 85  RWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSG 144
              K DV  +++  WR+S E  F WIGG+RPS   +++                      
Sbjct: 206 DAAKADVFYLISGMWRTSTERFFQWIGGFRPSELLNVVMPY------------------- 246

Query: 145 DLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADS----SLVELSHVVTELMST 200
            L  L+  Q+  V  LQ+   + E  LS+ + K Q+++A+S    +++E +H  T + + 
Sbjct: 247 -LQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDAVIESTHYPTHMAAA 305

Query: 201 NDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIA 260
            ++ Q                     LE   ++AD LR +T + +  ILT  Q+   L+A
Sbjct: 306 IENLQ--------------------ALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLA 345

Query: 261 AAELHLRL 268
             E   RL
Sbjct: 346 LGEYLHRL 353

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39162|TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 48/256 (18%)

Query: 17  AIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHY 76
           A+   DN +S   +F+  +  W+ EQN+ +  L +    Q    S       V   ++HY
Sbjct: 138 ALSFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQ---VSDIELRSLVENAMKHY 194

Query: 77  EQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHD 136
            Q +R KS   K+DV  +++  W++S E  FLWIGG+RPS    +L              
Sbjct: 195 FQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVLLPH----------- 243

Query: 137 LIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADS----SLVELSH 192
                       L+  QL  V  L++   + E  LS+ + K Q T+A+S     L E S+
Sbjct: 244 ---------FDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAESVAAGKLGEGSY 294

Query: 193 VVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPI 252
           +    M+   +R ++                   L    ++AD LR +T + +  ILT  
Sbjct: 295 IPQ--MTCAMERLEA-------------------LVSFVNQADHLRHETLQQMHRILTTR 333

Query: 253 QAVHFLIAAAELHLRL 268
           QA   L+A  E   RL
Sbjct: 334 QAARGLLALGEYFQRL 349

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39237|TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 113/275 (41%), Gaps = 57/275 (20%)

Query: 18  IRNGDNNNSDGES---------FQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQ 68
           + NG + NS G S         F+  +  W+ EQN+ +  L +      N+    +  E 
Sbjct: 134 VGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHGHINDIELRSLVEN 193

Query: 69  VRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGL 128
               ++HY + +R KS   K DV  +++  WR+S E  FLWIGG+RPS            
Sbjct: 194 A---MKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPS------------ 238

Query: 129 QLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADS--- 185
                  DL++ L       L+  QL  V  L++   + E  L++ + K Q T+AD    
Sbjct: 239 -------DLLKVLLP-HFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVAA 290

Query: 186 -SLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKA 244
             L E S++                     Q+ S     EA L    ++AD LR +T + 
Sbjct: 291 GQLGEGSYI--------------------PQVNSAMDRLEA-LVSFVNQADHLRHETLQQ 329

Query: 245 VIDILTPIQAVHFLIAAAELHLRLHDWGKQRDARH 279
           +  ILT  QA   L+A  E   RL         RH
Sbjct: 330 MYRILTTRQAARGLLALGEYFQRLRALSSSWATRH 364

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 48/270 (17%)

Query: 1   MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNS 60
           + V  SS  ++L  A       N NS   +F+  +  WL EQN+ +  + +A +     +
Sbjct: 146 LCVRNSSDTSYLGPAG------NMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQ-----A 194

Query: 61  SSSNFEEQVRV--VVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMA 118
              + E ++ V   + HY   +R K+   K DV  +++  WR+S E  F WIGG+RPS  
Sbjct: 195 HIGDIELKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSEL 254

Query: 119 FHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKY 178
            +++                       +  L+  QL  V  LQ+   + E+ LS+ L K 
Sbjct: 255 LNVVMPY--------------------VEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKL 294

Query: 179 QETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLR 238
           Q+ + +S  +++   V E ++       +   L               LE   ++AD LR
Sbjct: 295 QQGLVESIAIQIK--VVESVNHGAPMASAMENLQ-------------ALESFVNQADHLR 339

Query: 239 LKTFKAVIDILTPIQAVHFLIAAAELHLRL 268
            +T + +  ILT  QA   L+A  E   RL
Sbjct: 340 QQTLQQMSKILTTRQAARGLLALGEYFHRL 369

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 116/270 (42%), Gaps = 55/270 (20%)

Query: 11  FLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVR 70
           F+SS+A   +  + N    +F   +  WL E N+ +  L +A      N+ + + E  +R
Sbjct: 95  FISSSADQSHSMSGNG-ALAFDTEYARWLEEHNRQVNELRAAV-----NAHAGDTE--LR 146

Query: 71  VVVE----HYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKS 126
            VVE    HY++ ++ K    K DV  +L+  W++  E  FLW+GG+RPS    LL    
Sbjct: 147 SVVEKIMSHYDEIFKQKGNAAKADVFHVLSGMWKTPAERCFLWLGGFRPSELLKLL---- 202

Query: 127 GLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSS 186
                           S  L  L+  QL+ +  LQ+   + E  LS+ +   Q+++A+ +
Sbjct: 203 ----------------STQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAE-T 245

Query: 187 LVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEA-------KLEEIFHKADDLRL 239
           L           + N                +N++ + A        LE    +AD+LR 
Sbjct: 246 LAGSIGSSGSGSTGN---------------VANYMGQMAMAMGKLGTLENFLSQADNLRQ 290

Query: 240 KTFKAVIDILTPIQAVHFLIAAAELHLRLH 269
           +T + +  ILT  Q+   L+  ++   RL 
Sbjct: 291 QTLQQMQRILTTRQSARALLVISDYSSRLR 320

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
255574198	271	conserved hypothetical protein [Ricinus	0.926	0.981	0.578	9e-80
224096129	244	predicted protein [Populus trichocarpa]	0.815	0.959	0.602	1e-79
688423	287	tumor-related protein [Nicotiana glauca	0.916	0.916	0.549	1e-78
356511199	285	PREDICTED: transcription factor TGA4-lik	0.937	0.943	0.525	2e-77
449480891	255	PREDICTED: transcription factor TGA6-lik	0.850	0.956	0.549	6e-76
225438349	255	PREDICTED: transcription factor HBP-1b(c	0.846	0.952	0.591	3e-74
357520133	272	Transcription factor HBP-1b(c1) [Medicag	0.850	0.897	0.506	2e-70
356565430	277	PREDICTED: LOW QUALITY PROTEIN: transcri	0.818	0.848	0.503	5e-63
294610363	260	hypothetical protein [Triticum aestivum]	0.808	0.892	0.430	1e-40
359493600	246	PREDICTED: transcription factor TGA4-lik	0.804	0.939	0.367	3e-40

>gi|255574198|ref|XP_002528014.1| conserved hypothetical protein [Ricinus communis] gi|223532583|gb|EEF34370.1| conserved hypothetical protein [Ricinus communis]

 Score =  302 bits (774), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 162/280 (57%), Positives = 204/280 (72%), Gaps = 14/280 (5%)

Query: 1   MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNS 60
           MS LPSS      S A++R+    +S   SF  FFE WLVEQ Q L  LISASKQ+ NN 
Sbjct: 1   MSDLPSS------SPASLRS---TSSSHNSFHDFFEWWLVEQKQELDELISASKQKLNNK 51

Query: 61  SSSN--FEEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMA 118
           ++++   +  +  V+EHYEQYY AKS+W K DVL M +PSW S LED+FLWIGGWRPSMA
Sbjct: 52  NNNHDSLQPLINRVLEHYEQYYSAKSKWAKHDVLAMFSPSWTSPLEDAFLWIGGWRPSMA 111

Query: 119 FHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKY 178
           FHLLYSKSGLQLE +LHD+IRGL +GDLGDLSP QL +VD  QR II+EEK+++E +AK+
Sbjct: 112 FHLLYSKSGLQLEAQLHDVIRGLCTGDLGDLSPNQLVQVDEFQRRIIREEKNITENMAKH 171

Query: 179 QETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLR 238
           Q TVAD+S+VEL+H +++   T  D   S    + +++ES   TK   LE++  KADDLR
Sbjct: 172 QATVADTSMVELTHAISK---TRRDEGSSIGNEVQERVESTLKTKLEGLEKVLQKADDLR 228

Query: 239 LKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQRDAR 278
           L+T K +IDILTP Q VHFLIAAAELHLRLH+ GK+ D +
Sbjct: 229 LRTLKGIIDILTPDQTVHFLIAAAELHLRLHELGKKMDTK 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096129|ref|XP_002310543.1| predicted protein [Populus trichocarpa] gi|222853446|gb|EEE90993.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/254 (60%), Positives = 188/254 (74%), Gaps = 20/254 (7%)

Query: 29  ESFQKFFESWLVEQNQHLQALISASKQQENN------SSSSNFEEQVRVVVEHYEQYYRA 82
           E+F+KFFE WL EQN +L+ LIS+ K  ++N      SS +  +  +  V+EHYE YYRA
Sbjct: 5   ETFRKFFECWLAEQNNYLEQLISSCKDYDHNKKNSPQSSQATLQPLINRVLEHYEHYYRA 64

Query: 83  KSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLS 142
           KSRW K DVL ML+PSW S+LE +FLWIGGWRPS+AFHLLYSKSG QLE +LH+LI GL 
Sbjct: 65  KSRWAKDDVLSMLSPSWTSTLEHAFLWIGGWRPSVAFHLLYSKSGHQLEAQLHELICGLG 124

Query: 143 SGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTND 202
           +GDLGDLS +QLTRVD LQR  I+EE +L+EK  K+QETVADSS+VEL+H   E   T++
Sbjct: 125 TGDLGDLSGSQLTRVDQLQRKTIREENELTEKHVKHQETVADSSMVELAH---ENTGTDE 181

Query: 203 DRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAA 262
           +R           +ES    ++  L+EI   ADDLR++T K VIDILTPIQAVHFLIAAA
Sbjct: 182 ER-----------VESTLAPRKDGLQEILQMADDLRVRTIKGVIDILTPIQAVHFLIAAA 230

Query: 263 ELHLRLHDWGKQRD 276
           ELHLRLHDWGK+ D
Sbjct: 231 ELHLRLHDWGKKGD 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|688423|dbj|BAA05470.1| tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/273 (54%), Positives = 199/273 (72%), Gaps = 10/273 (3%)

Query: 12  LSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRV 71
           ++S+   RNG   N   ++F +FFE+WL EQ Q L+ L+SAS+   +  +++  EE+V V
Sbjct: 1   MASSLMKRNGVEKND--KTFHEFFETWLAEQKQELKELVSASRDV-SKGNNNVVEERVLV 57

Query: 72  -----VVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKS 126
                V++HYE YY  KS++ + DV GML P+WRS+LE +FLWIGGWRPSMAFHLLYSKS
Sbjct: 58  PLIKRVIQHYEGYYEEKSKYTEEDVFGMLNPTWRSNLEGAFLWIGGWRPSMAFHLLYSKS 117

Query: 127 GLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSS 186
           GLQ E +L  LIRG+++GDLG LSP Q+ +VD LQ+  I+EEK  SEKLA+ QETVAD+S
Sbjct: 118 GLQFEARLPQLIRGITTGDLGYLSPDQIDKVDELQKKTIREEKKSSEKLARVQETVADAS 177

Query: 187 LVELSHVVTELMSTNDDR--QDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKA 244
           +VELSH+VT+LM  +  R       +++D+++E+N  TKE  L  I  KAD+LRL T K 
Sbjct: 178 MVELSHIVTQLMMISGSRGGGGGGGKILDEEVEANLATKEEGLIIILQKADNLRLNTLKE 237

Query: 245 VIDILTPIQAVHFLIAAAELHLRLHDWGKQRDA 277
           ++ ILTP QA+HFLIAAAELHLRLH+WGK  DA
Sbjct: 238 ILAILTPTQAIHFLIAAAELHLRLHEWGKIEDA 270

Source: Nicotiana glauca x Nicotiana langsdorffii

Species: Nicotiana glauca x Nicotiana langsdorffii

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511199|ref|XP_003524316.1| PREDICTED: transcription factor TGA4-like [Glycine max]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/278 (52%), Positives = 198/278 (71%), Gaps = 9/278 (3%)

Query: 1   MSVLPSSIVTFLSSAAAIRNGDNNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNS 60
           MSV+P +              DN + + ESF KFFE W+ EQ QHL+ L++A   Q    
Sbjct: 1   MSVVPCN-------CNHTTEKDNLSGESESFHKFFECWISEQKQHLKDLLAAESTQ--LI 51

Query: 61  SSSNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFH 120
           S    +     VVEHYE YY+AKSR  K DVL ML+P+W SSLE++FLWIGGWRPSMAFH
Sbjct: 52  SDEELQALNDKVVEHYEYYYKAKSRCAKQDVLAMLSPTWMSSLEEAFLWIGGWRPSMAFH 111

Query: 121 LLYSKSGLQLEGKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQE 180
           L+YSKSGLQ E +L ++++GL + DLGDLS +QL ++D +QR  I EE+++++ +A++QE
Sbjct: 112 LIYSKSGLQFEARLDEVLQGLRTHDLGDLSASQLAQLDEMQRRTILEEREITDLMARHQE 171

Query: 181 TVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLK 240
           TVAD+S+VELSHVV+E++  N   +    + +++++ES  V KE  LE+I  KAD+LR  
Sbjct: 172 TVADASMVELSHVVSEMIRANQRGEVDQSKEIENKVESTLVLKEEGLEKILLKADELRFI 231

Query: 241 TFKAVIDILTPIQAVHFLIAAAELHLRLHDWGKQRDAR 278
           T K V+D+LTP QA+HFLIAAAELHLRLH+WGK+ DAR
Sbjct: 232 TLKDVVDVLTPKQAIHFLIAAAELHLRLHEWGKKMDAR 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480891|ref|XP_004156023.1| PREDICTED: transcription factor TGA6-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 138/251 (54%), Positives = 188/251 (74%), Gaps = 7/251 (2%)

Query: 30  SFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKL 89
           SF +FF+ W+ EQNQ+L  LIS +K   N  +    E  ++ V+EHYE YY+ KSRWV+ 
Sbjct: 6   SFGEFFQKWMKEQNQYLTELISTAKGGNNMVA----EALMKRVMEHYEHYYKVKSRWVEK 61

Query: 90  DVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDL 149
           D LG+L+PSW SS ED+FLW+GGWRP+MAFHLLYSKSGLQLEG+L DLI GLS+GDL DL
Sbjct: 62  DTLGILSPSWISSFEDAFLWLGGWRPTMAFHLLYSKSGLQLEGRLLDLIHGLSTGDLADL 121

Query: 150 SPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTEL---MSTNDDRQD 206
           S  Q+ ++D LQR ++K+EK+++EK+AKYQET+AD S+VELSH+ T+     S    + D
Sbjct: 122 SSHQVIKIDTLQRGVVKQEKEITEKMAKYQETIADPSMVELSHMATKFKMGTSGGGGQND 181

Query: 207 SDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHL 266
            +  +++++++    TKE  L+E+   AD+LRL+T K +I ILT  Q VHFLIAAAELHL
Sbjct: 182 GELNMVEEELKLALATKECGLKEVVKMADELRLETLKQIIGILTLTQRVHFLIAAAELHL 241

Query: 267 RLHDWGKQRDA 277
           R+H+WG +RD+
Sbjct: 242 RIHEWGLKRDS 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438349|ref|XP_002273632.1| PREDICTED: transcription factor HBP-1b(c1) [Vitis vinifera] gi|296082614|emb|CBI21619.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/252 (59%), Positives = 177/252 (70%), Gaps = 9/252 (3%)

Query: 26  SDGESFQKFFESWLVEQNQHLQALISASKQ-QENNSSSSNFEEQVRVVVEHYEQYYRAKS 84
           ++ E F KFFESWL EQNQHLQ LISAS+  Q  + S       V  VV HY  YY AKS
Sbjct: 6   ANHEGFHKFFESWLTEQNQHLQELISASRNNQHTDDSDQILCPLVERVVSHYHNYYHAKS 65

Query: 85  RWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSG 144
              + ++L MLTP WRS LED+FLW+GGWRPS+AFHLLYSKSGLQ E  L DLIRGLS+G
Sbjct: 66  LSTRDNILSMLTPPWRSLLEDAFLWVGGWRPSVAFHLLYSKSGLQFESGLADLIRGLSTG 125

Query: 145 DLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDR 204
           DLGD+S  QL RVD LQR  I+EE++++E +A+ QETVADS +VELS   TE     DD 
Sbjct: 126 DLGDMSHEQLCRVDELQRKTIREEREMTENMARIQETVADSKMVELSEAATEEGGGGDDL 185

Query: 205 QDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAEL 264
                    +++ES    KE  L E+  KADDLRL+T K V+DILTP+Q VHFLIAAAEL
Sbjct: 186 G--------ERVESALKHKEEGLAEMLLKADDLRLRTLKGVLDILTPMQCVHFLIAAAEL 237

Query: 265 HLRLHDWGKQRD 276
           HLRLH WGK +D
Sbjct: 238 HLRLHKWGKNKD 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520133|ref|XP_003630355.1| Transcription factor HBP-1b(c1) [Medicago truncatula] gi|355524377|gb|AET04831.1| Transcription factor HBP-1b(c1) [Medicago truncatula]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/249 (50%), Positives = 184/249 (73%), Gaps = 5/249 (2%)

Query: 23  NNNSDGESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRA 82
           +N +D ESF KFFE W+VEQN++L  L++A K  +   ++      +  VVEHYE YY+ 
Sbjct: 7   SNGNDAESFNKFFECWMVEQNKYLNELVAA-KSAQPQLTNDRMHTLIDKVVEHYECYYKT 65

Query: 83  KSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLS 142
           KS + K DVL M +P W S+LE++FLWIGGWRPSMAFHLLYSK  +Q + +L+DLI+G  
Sbjct: 66  KSSFAKKDVLSMFSPPWLSTLEEAFLWIGGWRPSMAFHLLYSKCSMQFQARLNDLIQGQK 125

Query: 143 SGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTND 202
           + DLGDL+ +QL   D LQ+  I+EE+++++ LA++QETVAD+ +VELSHVV+E++   +
Sbjct: 126 TCDLGDLTASQLAEFDDLQKKTIREEREITDMLAEHQETVADAPMVELSHVVSEMIRGGE 185

Query: 203 DRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAA 262
           +    +++ ++++IES    K   LE+I ++ADDLRL+  + +++ILTP QA+HFLIAAA
Sbjct: 186 N----EKKELEERIESVLEPKVEGLEKILYRADDLRLRALQGIVNILTPKQAIHFLIAAA 241

Query: 263 ELHLRLHDW 271
           ELHLRLH+W
Sbjct: 242 ELHLRLHEW 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565430|ref|XP_003550943.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor TGA2-like [Glycine max]

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/254 (50%), Positives = 177/254 (69%), Gaps = 19/254 (7%)

Query: 29  ESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRV----VVEHYEQYYRAKS 84
           ESFQ+FFE W+ EQNQHL+ L++A       S++   +E+++     VVEHYEQYY AK 
Sbjct: 16  ESFQEFFECWMFEQNQHLKELVAA------ESTTHLTDEKLQALNGKVVEHYEQYYNAKX 69

Query: 85  RWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSG 144
              K DVL M +P+W SSLE +FLWIGG R SMAFHL+YSK  LQ E +L +LIRG  + 
Sbjct: 70  -CAKQDVLAMFSPTWLSSLEKAFLWIGGXRLSMAFHLMYSKFSLQFEARLDELIRGRRTH 128

Query: 145 DLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDR 204
           DLGD+S +QL+ +D +QR II EE++++  +  +QETVAD+ +VELSH+  E+       
Sbjct: 129 DLGDISASQLSXIDEMQRRIIFEEREVTHLMESHQETVADAPIVELSHLRGEV------- 181

Query: 205 QDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAEL 264
              D+ + +  IES  V     LE+I  KAD+LRL+T KA++++LTP QA+HFLIA AEL
Sbjct: 182 -GEDKEIEEKVIESALVPLMEGLEQILLKADELRLRTLKAIVNVLTPKQAIHFLIADAEL 240

Query: 265 HLRLHDWGKQRDAR 278
           +LR+H+WGK+ D+R
Sbjct: 241 YLRVHEWGKKMDSR 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294610363|dbj|BAJ05339.1| hypothetical protein [Triticum aestivum]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/251 (43%), Positives = 149/251 (59%), Gaps = 19/251 (7%)

Query: 28  GESFQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWV 87
           GESF KFFE W++EQ++ L AL +A+  + +++   +    V  V+ HYE YYRAKS   
Sbjct: 21  GESFAKFFECWILEQSRDLAALRAAATARPDDA---DLRRLVDRVLGHYEHYYRAKSAAA 77

Query: 88  KLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDL--IRGLSSGD 145
             DVL M  PSW S+ E  +LW GGWRP+ A  LLYSKSG+QLE KL        L  GD
Sbjct: 78  SADVLPMFAPSWISATESLYLWCGGWRPTAAIQLLYSKSGVQLEAKLPAFLDGGSLGDGD 137

Query: 146 LGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQ 205
           LG LS  QL   D LQR  I+ E+++ E  A  QE++A + +VEL+           D  
Sbjct: 138 LGGLSAEQLQAADQLQRRTIRGEREIEEAAAGAQESLATTKMVELAG------KGGVDAA 191

Query: 206 DSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELH 265
           +   R MD + E+        ++ +   AD LRL+T + V+ +L P QAVHFL+AAAELH
Sbjct: 192 EGMEREMDAKAEA--------MKRVLEMADALRLETLRGVVGLLRPAQAVHFLVAAAELH 243

Query: 266 LRLHDWGKQRD 276
           L +H +G+++D
Sbjct: 244 LAVHKFGRRKD 254

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493600|ref|XP_003634633.1| PREDICTED: transcription factor TGA4-like [Vitis vinifera]

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/245 (36%), Positives = 141/245 (57%), Gaps = 14/245 (5%)

Query: 31  FQKFFESWLVEQNQHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKLD 90
           F   F+ W+ +Q+Q LQ L+       ++  S +    ++  ++H++ Y   ++   KLD
Sbjct: 9   FHCCFQDWINQQHQDLQELLQV--LDTDSPDSDHLRHLIQKSLQHFQDYSATRAELSKLD 66

Query: 91  VLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLGDLS 150
                 PSW +S E+SFLW+GG RPS+A  LLYS SG +L+ +L D ++G + G+L D+S
Sbjct: 67  APSFFCPSWITSFENSFLWLGGCRPSLAIRLLYSISGSELQAQLPDFLKGCTRGNLADIS 126

Query: 151 PTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRR 210
            TQL  ++ L   I++EE  LS ++A  QE  AD  L     ++ + + T  +      R
Sbjct: 127 ATQLISINALHGWIVREEDRLSSRMASMQEDTADEPLA----IIAKKLRTVGEYS----R 178

Query: 211 LMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHD 270
            ++  IE    T    L  +  +AD LRL TFK + +ILTP+Q  HFL+A+ +LHL +H+
Sbjct: 179 TVNSAIE----THSQALARVLEEADKLRLSTFKGLQEILTPLQGAHFLVASKKLHLSMHE 234

Query: 271 WGKQR 275
           WGKQR
Sbjct: 235 WGKQR 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2086400	244	AT3G14880 "AT3G14880" [Arabido	0.540	0.635	0.347	6.4e-37
TAIR|locus:2124157	282	AT4G18690 "AT4G18690" [Arabido	0.832	0.847	0.284	1.8e-25
TAIR|locus:2152390	291	DOG1 "AT5G45830" [Arabidopsis	0.592	0.584	0.340	2.9e-23
TAIR|locus:2124117	232	AT4G18650 "AT4G18650" [Arabido	0.400	0.495	0.320	2.3e-18
TAIR|locus:2016620	225	ZW2 [Arabidopsis thaliana (tax	0.334	0.426	0.33	6.7e-18
TAIR|locus:2124152	235	AT4G18680 "AT4G18680" [Arabido	0.668	0.817	0.274	1.6e-15
TAIR|locus:2024412	230	RAS1 "AT1G09950" [Arabidopsis	0.452	0.565	0.287	4.4e-14
TAIR|locus:2124132	152	AT4G18660 "AT4G18660" [Arabido	0.449	0.848	0.302	3.3e-12
TAIR|locus:2030551	384	TGA3 "AT1G22070" [Arabidopsis	0.317	0.236	0.308	4.8e-09
TAIR|locus:2184078	364	TGA4 "AT5G10030" [Arabidopsis	0.358	0.282	0.311	1.2e-08

TAIR|locus:2086400 AT3G14880 "AT3G14880" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 57/164 (34%), Positives = 90/164 (54%)

Query:    30 SFQKFFESWLVEQNQHLQALIXXXXXXXXXXXXXXXXXXVRV--VVEHYEQYYRAKSRWV 87
             SF+KF +SW+ +   HL  L                     V  V+EH+ +Y+RAK    
Sbjct:     9 SFKKFQQSWIEQLRNHLNHLRSAQNHHRNSATGDEERLREAVDRVMEHFREYHRAKWAAT 68

Query:    88 KLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGLSSGDLG 147
               DV+ ++   W S+LE S  W+GGWRP+  FHL+Y++S +  E ++ D++RG  +GDL 
Sbjct:    69 DKDVIEVMASPWASALERSLQWVGGWRPTTLFHLVYTESSILFESRIVDILRGFRTGDLS 128

Query:   148 DLSPTQLT-------RVDGLQRVIIKEEKDLSEKLAKYQETVAD 184
             DLSP+Q          V  LQ   +KEE  ++E+L+++Q+  +D
Sbjct:   129 DLSPSQFRVPFVKGRTVSELQCETVKEENAITEELSEWQDDASD 172

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2124157 AT4G18690 "AT4G18690" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 75/264 (28%), Positives = 132/264 (50%)

Query:    23 NNNSDG-ESFQK--FFESWLVEQNQHLQALIXXXXXXXXXXXXXXXXXXVRVVVEHYEQY 79
             +++S G E  QK  ++E W+  Q +H+  L                   V  +V  +++Y
Sbjct:     4 SSSSYGIEQLQKGCYYE-WMSVQAKHIVDL-KEALMSHRSKEDHKLEELVGKIVNDFQKY 61

Query:    80 YRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIR 139
                +S   +        PSW S LE+  LW+GG RPS    ++YS  G Q E +L   + 
Sbjct:    62 TEKRSELSRRSCSSYFAPSWNSPLENGLLWMGGCRPSSFIRVIYSLCGSQAETQLSQYLL 121

Query:   140 GLSS-------GDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSH 192
              +         G + DL+ +QL +++ L   +I++E  +++K A  QE VAD  +  ++ 
Sbjct:   122 KIDENVEVNHGGSMSDLNASQLAKINDLHIKVIEKEDKITKKSANLQENVADMPIA-IAA 180

Query:   193 VVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPI 252
               T+LM  N D       +++D ++      E  +  +  +AD LR +T + ++D++TP+
Sbjct:   181 YATDLM--NGDV------VVEDALDKY----EEGMAVLMVEADKLRFETLRKIVDVVTPV 228

Query:   253 QAVHFLIAAAELHLRLHDWGKQRD 276
             QA  FL+A   LH+ LH+WG+ R+
Sbjct:   229 QAAEFLLAGKRLHISLHEWGRVRE 252

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2152390 DOG1 "AT5G45830" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 65/191 (34%), Positives = 106/191 (55%)

Query:    97 PSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLEGKLHDLIRGL----SSG-----DLG 147
             P+W S LE++ +W+GG RPS  F L+Y+  G Q E ++   +R +    SSG      L 
Sbjct:    80 PTWNSPLENALIWMGGCRPSSFFRLVYALCGSQTEIRVTQFLRNIDGYESSGGGGGASLS 139

Query:   148 DLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDS 207
             DLS  QL +++ L   II EE+ +++K++  QE  AD   + ++ V  E+ +  +     
Sbjct:   140 DLSAEQLAKINVLHVKIIDEEEKMTKKVSSLQEDAAD---IPIATVAYEMENVGEPNVVV 196

Query:   208 DRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLR 267
             D+ L D Q E+        +  +  +AD+LR+ T   ++ IL+P+Q   FL+A  +LHL 
Sbjct:   197 DQAL-DKQEEA--------MARLLVEADNLRVDTLAKILGILSPVQGADFLLAGKKLHLS 247

Query:   268 LHDWGKQRDAR 278
             +H+WG  RD R
Sbjct:   248 MHEWGTMRDRR 258

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:2000033 "regulation of seed dormancy process" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0010162 "seed dormancy process" evidence=IMP

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

TAIR|locus:2124117 AT4G18650 "AT4G18650" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 41/128 (32%), Positives = 67/128 (52%)

Query:   149 LSPTQLTRVDGLQRVIIK-EEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDS 207
             L   Q+ +++ L RV  K +E+ +  ++ +YQ  +AD  +VEL+ +   +          
Sbjct:   111 LVEAQVKKLEEL-RVKTKFDEQKIEREMERYQVAMADRKMVELARLGCHV---------G 160

Query:   208 DRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLR 267
                +M   +E+        LE++   AD +RLKT K ++DILTP Q V FL AAA   ++
Sbjct:   161 GESVM--VVEAAVRGLSMGLEKMVKAADCVRLKTLKGILDILTPPQCVEFLAAAATFQVQ 218

Query:   268 LHDWGKQR 275
             L  WG +R
Sbjct:   219 LRRWGNRR 226

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016620 ZW2 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
 Identities = 33/100 (33%), Positives = 43/100 (43%)

Query:    26 SDGESFQKFFESWLVEQNQHLQALIXXXXXXXXXXXXXXXXXXVRVVVEHYEQYYRAKSR 85
             S  E+F  FF  WL    Q +Q L                   V   + HY QYY  KS 
Sbjct:     5 SSSETFASFFNDWLCRHRQFVQQL-AHLADETTIVTPIEEESLVSNFLSHYLQYYEEKSV 63

Query:    86 WVKL---DVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLL 122
              + +   D+    +P W SS E   LWIGG++P M F L+
Sbjct:    64 AMSVAGDDIYDFFSPPWLSSYEKLILWIGGFKPGMVFKLI 103

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2124152 AT4G18680 "AT4G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 56/204 (27%), Positives = 96/204 (47%)

Query:    72 VVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLYSKSGLQLE 131
             +V  Y  Y   +S            PSW + +E+S LW+GG RPS    L+Y+  G Q E
Sbjct:    32 IVNDYHTYAGKRSELSYRCCAHYFAPSWNTPIENSMLWMGGCRPSSFIRLIYALCGSQAE 91

Query:   132 GKLHDLIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELS 191
              +L   +  L   D  D++      +  L    + +  DL  ++ K ++ +  +S     
Sbjct:    92 TQLSQYL--LKIDDDFDINHGGF--MSDLTATQLGKLNDLHLEVIKKEDKITKTS-ANFQ 146

Query:   192 HVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTP 251
               V +L   +    D     ++D ++ +    E  +  +  +AD LR +T + ++D++TP
Sbjct:   147 DDVADLPIADVVHADV---AVEDALDKH----EEGMAVLLAEADKLRFETLRKIVDVVTP 199

Query:   252 IQAVHFLIAAAELHLRLHDWGKQR 275
             +QAV FL+A   L L LHD G+ R
Sbjct:   200 LQAVEFLLAGKRLQLSLHDRGRVR 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024412 RAS1 "AT1G09950" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
 Identities = 40/139 (28%), Positives = 72/139 (51%)

Query:   137 LIRGLSSGDLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTE 196
             L+  L+   + DL+  Q  R+  L+    ++E+++    A  Q++VAD  ++  +  V  
Sbjct:   100 LVFKLTEVSVADLTRHQKDRISSLKSETRRKEREVMRDFALVQQSVADPPVMLAARRVGA 159

Query:   197 LMSTNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVH 256
             +     D +++D   +++ +E   V K A +    + AD LR  T   V++ILTP QA+ 
Sbjct:   160 VGMV--DGEETD---LEEAME---VLK-AGMAAAMNNADQLRCSTVGKVVEILTPPQAIK 210

Query:   257 FLIAAAELHLRLHDWGKQR 275
              L    +LHLRL D  ++R
Sbjct:   211 VLRTIGQLHLRLRDRDQER 229

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124132 AT4G18660 "AT4G18660" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 43/142 (30%), Positives = 74/142 (52%)

Query:   140 GLSSGD-LGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELM 198
             G+  G+ + DL+  QL +++ L    ++ E  L++  A  QE  AD+ +  ++    E++
Sbjct:     9 GIGGGESMSDLTAEQLFKINELHLKTVEAENKLTKVSASLQEDTADTPIA-VAAFYKEVI 67

Query:   199 STNDDRQDSDRRLMDDQIESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFL 258
                D   +   R +D          E  +  +  +AD LR+ T   ++DILT +QA  FL
Sbjct:    68 GQADVVVE---RALDKH--------EEDMGGLLVEADKLRMTTLTKIVDILTAVQAADFL 116

Query:   259 IAAAELHLRLHDWGKQRDARHL 280
             +A  +LHL +H+WGK R+ R L
Sbjct:   117 LAGKKLHLAMHEWGKSREHRRL 138

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2030551 TGA3 "AT1G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
 Identities = 29/94 (30%), Positives = 43/94 (45%)

Query:    23 NNNSDGESFQKFFESWLVEQNQHLQALIXXXXXXXXXXXXXXXXXXVRVVVEHYEQYYRA 82
             N NS   +F+  +  WL EQN+ +  +                   V   + HY   +R 
Sbjct:   162 NMNSGIAAFEMEYTHWLEEQNRRVSEI---RTALQAHIGDIELKMLVDSCLNHYANLFRM 218

Query:    83 KSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPS 116
             K+   K DV  +++  WR+S E  F WIGG+RPS
Sbjct:   219 KADAAKADVFFLMSGMWRTSTERFFQWIGGFRPS 252

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IPI

GO:0005516 "calmodulin binding" evidence=IDA;TAS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0003677 "DNA binding" evidence=IDA

TAIR|locus:2184078 TGA4 "AT5G10030" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 33/106 (31%), Positives = 52/106 (49%)

Query:    17 AIRNGDNNNSDGESFQKFFESWLVEQNQHLQALIXXXXXXXXXXXXXXXXXXVRVVVEHY 76
             A+   DN +S   +F+  +  W+ EQN+ +  L                   V   ++HY
Sbjct:   138 ALSFSDNMSSGIVAFEMEYGHWVEEQNRQICEL---RTVLHGQVSDIELRSLVENAMKHY 194

Query:    77 EQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLL 122
              Q +R KS   K+DV  +++  W++S E  FLWIGG+RPS    +L
Sbjct:   195 FQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVL 240

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0003677 "DNA binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VII.1642.1 hypothetical protein (244 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam14144	79	pfam14144, DOG1, Seed dormancy control	3e-24

>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control

 Score = 93.0 bits (232), Expect = 3e-24
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 44  QHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSL 103
           + L  L +A       +S       V  V+ HY++Y+R KS   K DV  +L+  W++  
Sbjct: 1   RLLAELRAALNAH---ASDDELRSLVDKVLAHYDEYFRLKSAAAKADVFHLLSGMWKTPA 57

Query: 104 EDSFLWIGGWRPSMAFHLLYSK 125
           E  FLWIGG+RPS    LLYS 
Sbjct: 58  ERCFLWIGGFRPSELLKLLYSL 79

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PF14144	80	DOG1: Seed dormancy control	100.0
PF13801	125	Metal_resist: Heavy-metal resistance; PDB: 3EPV_C	96.85
COG3678	160	CpxP P pilus assembly/Cpx signaling pathway, perip	96.13
PRK12750	170	cpxP periplasmic repressor CpxP; Reviewed	95.8
PRK10363	166	cpxP periplasmic repressor CpxP; Reviewed	94.29
PRK10455	161	periplasmic protein; Reviewed	93.95
PRK12751	162	cpxP periplasmic stress adaptor protein CpxP; Revi	93.86
PF07813	100	LTXXQ: LTXXQ motif family protein; InterPro: IPR01	90.93

>PF14144 DOG1: Seed dormancy control

Probab=100.00  E-value=4.2e-35  Score=226.97  Aligned_cols=79  Identities=48%  Similarity=0.907  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhhhhcCCCCCchHHHHHHHHHHhHHHHHHHHhhhhhcccccccCCCCCChhHHHHHHhcCCCchHHHHHHH
Q 023115           44 QHLQALISASKQQENNSSSSNFEEQVRVVVEHYEQYYRAKSRWVKLDVLGMLTPSWRSSLEDSFLWIGGWRPSMAFHLLY  123 (287)
Q Consensus        44 ~~l~eLr~Al~~~~~~~sd~eL~~LV~~~l~HY~~y~~~Ks~aA~~DV~~llsp~W~tplEr~fLWiGG~RPS~~l~Lly  123 (287)
                      |++.|||+|++++.  .+|.+|+.||+++++||++||++|+.+|++|||++|+|+|+||+||||+||||||||++|||||
T Consensus         1 ~~l~eLr~al~~~~--~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~   78 (80)
T PF14144_consen    1 RQLNELRAALQSHA--DSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLY   78 (80)
T ss_pred             CcHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHh
Confidence            57899999998665  4699999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q 023115          124 S  124 (287)
Q Consensus       124 s  124 (287)
                      +
T Consensus        79 s   79 (80)
T PF14144_consen   79 S   79 (80)
T ss_pred             c
Confidence            6

>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H

Probab=96.85  E-value=0.025  Score=44.57  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             CCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHH
Q 023115          148 DLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKL  227 (287)
Q Consensus       148 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L  227 (287)
                      +||++|..+|..+......+-..+-+.+......+......              .++      ..    .++...++.+
T Consensus        41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~--------------~~~------D~----~~i~a~~~~~   96 (125)
T PF13801_consen   41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAA--------------PPP------DE----AAIEALLEEI   96 (125)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SSS-------H----HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CCC------CH----HHHHHHHHHH
Confidence            49999999999999999999999999999999988777631              111      11    3345666777


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhcCHHHHH
Q 023115          228 EEIFHKADDLRLKTFKAVIDILTPIQAV  255 (287)
Q Consensus       228 ~~~l~qAD~LR~~TL~~l~~ILTp~QAA  255 (287)
                      ...-.+.+..|.+++.++..+|||.|=+
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~~LtpeQR~  124 (125)
T PF13801_consen   97 REAQAELRQERLEHLLEIRAVLTPEQRA  124 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-GGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence            7788888899999999999999999865

>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]

Probab=96.13  E-value=0.072  Score=46.61  Aligned_cols=88  Identities=22%  Similarity=0.286  Sum_probs=60.1

Q ss_pred             CCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHH
Q 023115          148 DLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKL  227 (287)
Q Consensus       148 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L  227 (287)
                      +||++|..+|.++...-+   .+..+-+..-..++-+.+.           .  +.        +|   ++++..+.+.+
T Consensus        57 ~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~-----------a--~~--------~D---~aka~a~~~~m  109 (160)
T COG3678          57 DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIA-----------A--DQ--------FD---EAKARAQAEKM  109 (160)
T ss_pred             cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-----------c--CC--------cC---HHHHHHHHHHH
Confidence            399999999999887766   3333333333334433321           1  11        11   13445677888


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023115          228 EEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAA  262 (287)
Q Consensus       228 ~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~A~~  262 (287)
                      +..-.+.+.+|.++-.++.+||||.|.+.|=--.+
T Consensus       110 ~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~  144 (160)
T COG3678         110 ENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLA  144 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            88889999999999999999999999977644433

>PRK12750 cpxP periplasmic repressor CpxP; Reviewed

Probab=95.80  E-value=0.31  Score=42.95  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             CCCCCcHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHH
Q 023115          145 DLGDLSPTQLTRVDGLQRVIIKEEKD--------LSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQI  216 (287)
Q Consensus       145 ~l~~LS~~Ql~~I~~Lq~~t~~~E~a--------Ls~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m  216 (287)
                      .|+ ||++|..+|..++...+.+=.+        ..+.|....+.+.+.+.+              +++      ....+
T Consensus        50 ~L~-LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a--------------~~F------Deaav  108 (170)
T PRK12750         50 QLD-LTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLA--------------DDF------DEAAA  108 (170)
T ss_pred             hCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhc--------------CCC------CHHHH
Confidence            344 9999999999999887765444        334444444444444321              111      11122


Q ss_pred             HHHHHHhHHHHHHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhch
Q 023115          217 ESNFVTKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHDWG  272 (287)
Q Consensus       217 ~~a~~~kl~~L~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~A~~e~~~~lr~~G  272 (287)
                      .    ...+.+...-.+.---|.++.+++..||||-|=+.|-.-..+.....++-+
T Consensus       109 r----al~~~~~~~~~e~~v~~~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~  160 (170)
T PRK12750        109 N----DLAKQMVEKQVERRVKMLEKRHQMLSILTPEQKAKFQELQQERMQECQDKM  160 (170)
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    222222222222223467889999999999999999888766665555554

>PRK10363 cpxP periplasmic repressor CpxP; Reviewed

Probab=94.29  E-value=0.74  Score=40.60  Aligned_cols=83  Identities=12%  Similarity=0.099  Sum_probs=48.5

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHH
Q 023115          149 LSPTQLTRVDGLQRVIIKEEKDLSE-KLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKL  227 (287)
Q Consensus       149 LS~~Ql~~I~~Lq~~t~~~E~aLs~-~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L  227 (287)
                      ||++|..+|.+|.+.-+.+.+.++. +++.++    +.+.           .   +.+      .+..+    ....+.+
T Consensus        51 LTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~-----------a---d~F------DEaav----ra~a~km  102 (166)
T PRK10363         51 LTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVT-----------A---ENF------DENAV----RAQAEKM  102 (166)
T ss_pred             CCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHh-----------c---CCC------CHHHH----HHHHHHH
Confidence            9999999999999888876555442 222222    1111           1   111      11122    2222222


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 023115          228 EEIFHKADDLRLKTFKAVIDILTPIQAVHFLI  259 (287)
Q Consensus       228 ~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~  259 (287)
                      ..-=.+.-=-|.++=++|..||||-|-+.|=-
T Consensus       103 a~~~~e~~Vem~k~~nqmy~lLTPEQKaq~~~  134 (166)
T PRK10363        103 AQEQVARQVEMAKVRNQMYRLLTPEQQAVLNE  134 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            22222222357788899999999999999943

>PRK10455 periplasmic protein; Reviewed

Probab=93.95  E-value=0.56  Score=41.00  Aligned_cols=83  Identities=18%  Similarity=0.184  Sum_probs=49.5

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHH
Q 023115          149 LSPTQLTRVDGLQRVIIKEEKDLS-EKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKL  227 (287)
Q Consensus       149 LS~~Ql~~I~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L  227 (287)
                      ||++|..+|..|.+..+..-...+ ++.+.++    +.+.              .+++       |   ++++...++.+
T Consensus        57 LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~--------------ad~F-------D---eaavra~~~k~  108 (161)
T PRK10455         57 LTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIA--------------SDTF-------D---KAKAEAQITKM  108 (161)
T ss_pred             CCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHc--------------cCcc-------C---HHHHHHHHHHH
Confidence            999999999999877665533322 1222222    1110              1111       1   12223334444


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 023115          228 EEIFHKADDLRLKTFKAVIDILTPIQAVHFLI  259 (287)
Q Consensus       228 ~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~  259 (287)
                      ...-.+.-..|.++-.+|..||||-|-+.|=.
T Consensus       109 ~~~~~~~~~~~~~~~~qiy~vLTPEQr~q~~~  140 (161)
T PRK10455        109 EAQRKARMLAHMETQNKIYNVLTPEQKKQFNA  140 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44444444578899999999999999998764

>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed

Probab=93.86  E-value=1.1  Score=39.18  Aligned_cols=94  Identities=16%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHH
Q 023115          149 LSPTQLTRVDGLQRVIIKEEKDLS-EKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKL  227 (287)
Q Consensus       149 LS~~Ql~~I~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L  227 (287)
                      ||++|..+|-.+...-+....... .+++.+    -+.+.              .+++      ..    +++...++.+
T Consensus        57 LTd~QR~qmr~im~~~r~~~~~~~~~~~~~m----~~Li~--------------Ad~F------De----aAvra~~~km  108 (162)
T PRK12751         57 LTEQQRQQMRDLMRQSHQSQPRLDLEDREAM----HKLIT--------------ADKF------DE----AAVRAQAEKM  108 (162)
T ss_pred             CCHHHHHHHHHHHHHhhhcccchhHHHHHHH----HHHHh--------------cCCC------CH----HHHHHHHHHH
Confidence            999999999998888776532111 112221    11111              1121      11    2223333344


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHh
Q 023115          228 EEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAELHLRLHD  270 (287)
Q Consensus       228 ~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~A~~e~~~~lr~  270 (287)
                      ...-.+----+.++..+++.+|||-|-+.|---.-+-...+|+
T Consensus       109 a~~~~e~~v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~  151 (162)
T PRK12751        109 SQNQIERHVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ  151 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            4333444446889999999999999999987666655555544

>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT)

Probab=90.93  E-value=1.3  Score=34.06  Aligned_cols=82  Identities=23%  Similarity=0.305  Sum_probs=44.7

Q ss_pred             CCCCCcHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHH
Q 023115          145 DLGDLSPTQLTRVDGLQRVIIKEEKDL---SEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFV  221 (287)
Q Consensus       145 ~l~~LS~~Ql~~I~~Lq~~t~~~E~aL---s~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~  221 (287)
                      .|+ ||++|...+..|+...+..-..+   .+.+.++.+     .            .  .+         ...+ .++ 
T Consensus        12 ~L~-LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~------------~--~~---------~~~~-~~~-   60 (100)
T PF07813_consen   12 ELN-LTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD-----P------------S--FD---------EAAP-EAL-   60 (100)
T ss_dssp             TS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH-----S------------S-------------HHHH-HHH-
T ss_pred             hCC-CCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc-----c------------c--CC---------hhHH-HHH-
Confidence            444 99999999999988877666666   111221111     0            0  00         0011 111 


Q ss_pred             HhHHHHHHHHHHhhHHHHHHHHHHHhhcCHHHHHHH
Q 023115          222 TKEAKLEEIFHKADDLRLKTFKAVIDILTPIQAVHF  257 (287)
Q Consensus       222 ~kl~~L~~~l~qAD~LR~~TL~~l~~ILTp~QAA~f  257 (287)
                      ...+.+...-.+.-..|..+...+..||||-|=..|
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLt~eQk~~~   96 (100)
T PF07813_consen   61 AAMAEMMELRAEMMEERAKAQHALYAVLTPEQKEKF   96 (100)
T ss_dssp             H--HHCHHHHHHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            111344444555556788999999999999998776

This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
2y39_A	118	Nickel and cobalt resistance protein CNRR; metal b	96.97
3itf_A	145	Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr	95.15
3o39_A	108	Periplasmic protein related to spheroblast format;	92.9
3oeo_A	138	Spheroplast protein Y; LTXXQ, extracytoplasmic str	91.35
3lay_A	175	Zinc resistance-associated protein; salmonella typ	89.82

>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*

Probab=96.97  E-value=0.0089  Score=48.65  Aligned_cols=89  Identities=13%  Similarity=0.120  Sum_probs=67.6

Q ss_pred             CCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHH
Q 023115          148 DLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKL  227 (287)
Q Consensus       148 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L  227 (287)
                      +||++|-..|+.++..-.....+|..+|......+++.+..+        .+  ++          -++..|+...-.  
T Consensus        20 ~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~--------~~--~~----------p~V~aaid~~h~--   77 (118)
T 2y39_A           20 PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKN--------PA--WS----------PEVEAATQEVER--   77 (118)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CS--CC----------HHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cc--cC----------HHHHHHHHHHHH--
Confidence            399999999999999999999999999999999999887421        11  22          245455433322  


Q ss_pred             HHHHHHhhHHHHHH---HHHHHhhcCHHHHHHHHHHHHH
Q 023115          228 EEIFHKADDLRLKT---FKAVIDILTPIQAVHFLIAAAE  263 (287)
Q Consensus       228 ~~~l~qAD~LR~~T---L~~l~~ILTp~QAA~fL~A~~e  263 (287)
                           ..-.|+..|   +-+|..||||-|+..|=-.+.+
T Consensus        78 -----~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~  111 (118)
T 2y39_A           78 -----AAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLID  111 (118)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 444588999   6667899999999999766554

>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A

Probab=95.15  E-value=0.11  Score=43.49  Aligned_cols=91  Identities=15%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             CCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhH
Q 023115          145 DLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKE  224 (287)
Q Consensus       145 ~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl  224 (287)
                      .|. ||++|..+|..|....+.+.+.++.  +.- +.+-+.+           ..   +.       +|   ++++...+
T Consensus        43 ~L~-LTdeQkqqir~L~~~~r~~~~~~~~--~~r-~~l~~Li-----------~a---d~-------fD---eaa~ral~   94 (145)
T 3itf_A           43 GIS-LTEHQRQQMRDLMQQARHEQPPVNV--SEL-ETMHRLV-----------TA---EN-------FD---ENAVRAQA   94 (145)
T ss_dssp             TCC-CCHHHHHHHHHHHHHHHHHSCCCCH--HHH-HHHHHHH-----------TC---SS-------CC---HHHHHHHH
T ss_pred             cCC-CCHHHHHHHHHHHHHHHHHhhhccH--HHH-HHHHHHH-----------cc---CC-------CC---HHHHHHHH
Confidence            444 9999999999999888876554421  111 1111111           01   11       11   13444555


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 023115          225 AKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAE  263 (287)
Q Consensus       225 ~~L~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~A~~e  263 (287)
                      +.+...-.+.--.|.++-.+|..||||-|-+.|-.-..+
T Consensus        95 ~~~~~~~~e~~v~r~k~~~qiy~vLTPEQk~ql~e~~~~  133 (145)
T 3itf_A           95 EKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQ  133 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            566666666666889999999999999999998764443

>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}

Probab=92.90  E-value=0.1  Score=41.60  Aligned_cols=83  Identities=20%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhHHHHH
Q 023115          149 LSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKEAKLE  228 (287)
Q Consensus       149 LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl~~L~  228 (287)
                      ||++|..+|-.|....+.+-+....  +.- +.+-+.+            .  .+.+       |   ++++...++.+.
T Consensus        18 LTd~Qk~qir~L~~~~r~~~~~~~~--~~r-~~m~~Li------------~--ad~F-------D---Eaaar~l~~~~~   70 (108)
T 3o39_A           18 LTDAQKQQIREIMKGQRDQMKRPPL--EER-RAMHDII------------A--SDTF-------D---KAKAEAQIAKME   70 (108)
T ss_dssp             CCHHHHHHHHHHHHTTTTSCCCCCH--HHH-HHHHHHH------------S--SSSC-------C---HHHHHHHHHHTH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccH--HHH-HHHHHHh------------c--cCCC-------C---HHHHHHHHHHHH
Confidence            9999999999998887765332221  111 1111111            1  1111       1   122333334444


Q ss_pred             HHHHHhhHHHHHHHHHHHhhcCHHHHHHHH
Q 023115          229 EIFHKADDLRLKTFKAVIDILTPIQAVHFL  258 (287)
Q Consensus       229 ~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL  258 (287)
                      ..-.+.---|.++=.+|..||||-|-+.|-
T Consensus        71 ~~~~e~~v~~~r~~~qmy~lLTPEQk~q~~  100 (108)
T 3o39_A           71 EQRKANMLAHMETQNKIYNILTPEQKKQFN  100 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            444444446888899999999999998874

>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}

Probab=91.35  E-value=0.066  Score=44.22  Aligned_cols=91  Identities=21%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             CCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCCCcchhhhhhHHHHHHHHHhH
Q 023115          145 DLGDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSSLVELSHVVTELMSTNDDRQDSDRRLMDDQIESNFVTKE  224 (287)
Q Consensus       145 ~l~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~m~~a~~~kl  224 (287)
                      .|. ||++|..+|..|.+..+..-..   .+....+.+.+.+.           .  + .+      ..    +++...+
T Consensus        31 ~L~-LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~-----------a--~-~f------De----aav~al~   82 (138)
T 3oeo_A           31 DLN-LTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIIT-----------S--D-TF------DK----VKAEAQI   82 (138)
T ss_dssp             CSC-CCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHT-----------C--S-SC------CH----HHHHHHH
T ss_pred             cCC-CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc-----------c--C-CC------CH----HHHHHHH
Confidence            454 9999999999998777654221   11111122222111           1  1 11      11    2233444


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 023115          225 AKLEEIFHKADDLRLKTFKAVIDILTPIQAVHFLIAAAE  263 (287)
Q Consensus       225 ~~L~~~l~qAD~LR~~TL~~l~~ILTp~QAA~fL~A~~e  263 (287)
                      +.+...-.+.-..|.++..+|..||||-|-+.|---..+
T Consensus        83 ~~~~~~~~e~~~~~~~~~~~~~~vLTPEQr~q~~~~~~k  121 (138)
T 3oeo_A           83 AKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEK  121 (138)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            444455555666789999999999999999998765554

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=89.82  E-value=4.2  Score=34.82  Aligned_cols=40  Identities=10%  Similarity=0.049  Sum_probs=34.3

Q ss_pred             CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023115          147 GDLSPTQLTRVDGLQRVIIKEEKDLSEKLAKYQETVADSS  186 (287)
Q Consensus       147 ~~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~  186 (287)
                      -+||++|..++..|+++.+.+-.+|.+.|...++.+.+..
T Consensus        66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~  105 (175)
T 3lay_A           66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALL  105 (175)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999999999888888876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00