Citrus Sinensis ID: 023125

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------

MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVPPKSLHEPEPEPEPEKSETETQTRASESVAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKASEDSGPGVVTICRYNGQRENETASNDMVLSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPEEDSGRGRDRGSTVTVVLPENQLEKLMNELNQEWNLA

cEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEEccccccccccccccccEEEEEcccccccccEEEEEEccccccccccccccEEEEEccHHHHHHHHHHHHHHHccc

ccccEcHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEEccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEEcccccccEEEEcccccEEEEEEccccccccEEEEEccccccccccccccEEEEEEccHHHHHHHHHHHHHHcccc

MSLGLSWahvlgdpfsaSAFVSMWAQIMagrvppkslhepepepepeksetetqtrasesvagnlypikrvdpvgdhwqfpnncnikthtFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKasedsgpgvVTICRyngqrenetasndmVLSTAEVdfdvsksdVWELSTLIAdkrkdvdekvlsessdfimyganltfvdmeeadvyglklqgqkpvdvnysingvgEQGVVLVLagpeedsgrgrdrgstvtvvlpeNQLEKLMNELNQEWNLA

MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVPPKSLHEPepepepeksetetqtrasesvagnlypIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAkasedsgpGVVTICRYNGQrenetasndmvLSTAEVDFDVSKSDVWELStliadkrkdvdekVLSESSDFIMYGANLTFVDMEEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGpeedsgrgrdrgstvtvvlpenqlekLMNELNQEWNLA

MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVppkslhepepepepeksetetQTRASESVAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKASEDSGPGVVTICRYNGQRENETASNDMVLSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPEEDSGRGRDRGSTVTVVLPENQLEKLMNELNQEWNLA

****LSWAHVLGDPFSASAFVSMWAQIMAG********************************GNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKASEDSGPGVVTICRYNG**********MVLSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLA***************************************

MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVPPKSLHEPEPEPEPE********************************FPNNCNIKTHTFQFTKKQLD******************HFEVISATIWKLLAKA*****P**********Q***ETASNDMVLSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGP*******RDRGSTVTVVLPENQLEKLMNELNQEWNL*

MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVP**************************SVAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKASEDSGPGVVTICRYNGQRENETASNDMVLSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPE***********TVTVVLPENQLEKLMNELNQEWNLA

MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVPPKSLHEPEP***********QTRASE*VAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKASEDSGPGVVTICRYNGQRENETASNDMVLSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPEEDSGRGRDRGSTVTVVLPENQLEKLMNELNQEWNLA

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		287
255545980		436	Anthranilate N-benzoyltransferase protei	0.926	0.610	0.488	6e-69
224081929		436	predicted protein [Populus trichocarpa]	0.961	0.633	0.501	3e-64
225433483		435	PREDICTED: hydroxycinnamoyl-Coenzyme A s	0.954	0.629	0.414	1e-54
298205227		401	unnamed protein product [Vitis vinifera]	0.954	0.683	0.414	1e-54
147861601		312	hypothetical protein VITISV_003221 [Viti	0.958	0.881	0.410	4e-54
225459075		429	PREDICTED: hydroxycinnamoyl-Coenzyme A s	0.933	0.624	0.424	1e-53
357465231		480	Omega-hydroxypalmitate O-feruloyl transf	0.954	0.570	0.411	3e-53
356500771		443	PREDICTED: omega-hydroxypalmitate O-feru	0.972	0.629	0.429	3e-53
302142073		471	unnamed protein product [Vitis vinifera]	0.923	0.562	0.425	7e-53
357449383		442	Taxadien-5-alpha-ol O-acetyltransferase	0.940	0.610	0.400	1e-52

>gi\|255545980\|ref\|XP_002514050.1\| Anthranilate N-benzoyltransferase protein, putative [Ricinus communis] gi\|223547136\|gb\|EEF48633.1\| Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 145/297 (48%), Positives = 196/297 (65%), Gaps = 31/297 (10%)

Query: 1   MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVPPKSLHEP---EPEPEPEKSETETQTRA 57
           +S+GLSWAHVLGDPFSAS F++ WAQ   G VP KSLH P   EPE  P           
Sbjct: 153 LSVGLSWAHVLGDPFSASNFINNWAQFTQGHVPCKSLHVPNTNEPECPP----------- 201

Query: 58  SESVAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVS 117
             S+    + +KRVDPVGD+W   NNC ++T++F FT KQLD + S      + +++ +S
Sbjct: 202 --SIPREPFSLKRVDPVGDYWLTTNNCKMETYSFVFTAKQLDTILSESAISDLFQSSKIS 259

Query: 118 HFEVISATIWKLLAKASEDSGPGVVTIC-RYNGQRENETASNDMVLSTAEVDFDVSKSDV 176
           HFEVISA IWKLL+K  EDSGP + TIC R +   ENE +SN MV ST   DF V+K  V
Sbjct: 260 HFEVISAIIWKLLSKIREDSGPRIATICTRKSRNHENEVSSNKMVFSTVRADFSVAKGGV 319

Query: 177 WELSTLIADKRKDVD---EKVL-----SESSDFIMYGANLTFVDMEEADVYGLKLQGQKP 228
            EL+ LIA+K++  +   E ++      + S++I YGANLTFV+MEEA++YGL+L+  KP
Sbjct: 320 DELAALIAEKQEGENRWIEGIMECDKGDDQSNYIAYGANLTFVNMEEANIYGLELKEHKP 379

Query: 229 VDVNYSINGVGEQGVVLVL-AGPEEDSGRGRDRGSTVTVVLPENQLEKLMNELNQEW 284
           V  NY+INGVG++G V+VL AGP++ S      G  VT++LPE+QL++L   + +EW
Sbjct: 380 VYANYTINGVGDEGAVIVLPAGPDKGS-----NGRRVTLILPEDQLKELKYMVREEW 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224081929\|ref\|XP_002306532.1\| predicted protein [Populus trichocarpa] gi\|222855981\|gb\|EEE93528.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225433483\|ref\|XP_002264429.1\| PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|298205227\|emb\|CBI17286.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147861601\|emb\|CAN81455.1\| hypothetical protein VITISV_003221 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225459075\|ref\|XP_002283781.1\| PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357465231\|ref\|XP_003602897.1\| Omega-hydroxypalmitate O-feruloyl transferase [Medicago truncatula] gi\|355491945\|gb\|AES73148.1\| Omega-hydroxypalmitate O-feruloyl transferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356500771\|ref\|XP_003519204.1\| PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Glycine max]	Back alignment and taxonomy information

>gi\|302142073\|emb\|CBI19276.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357449383\|ref\|XP_003594968.1\| Taxadien-5-alpha-ol O-acetyltransferase [Medicago truncatula] gi\|355484016\|gb\|AES65219.1\| Taxadien-5-alpha-ol O-acetyltransferase [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		287
TAIR\|locus:2005499		421	CER2 "ECERIFERUM 2" [Arabidops	0.878	0.598	0.324	2.5e-33
TAIR\|locus:2119480		428	CER26 "ECERIFERUM 26" [Arabido	0.902	0.605	0.293	1.2e-28
TAIR\|locus:2076136		420	CER26-LIKE "AT3G23840" [Arabid	0.689	0.471	0.347	6.4e-28

TAIR\|locus:2005499 CER2 "ECERIFERUM 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 93/287 (32%), Positives = 154/287 (53%)

Query:     1 MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVXXXXXXXXXXXXXXXXXXXXXQTRASES 60
             + +GLSWAH+LGD FSAS F+    Q+++G                        + A   
Sbjct:   158 LCIGLSWAHILGDVFSASTFMKTLGQLVSGHAPTKPVYPKTPELT---------SHARND 208

Query:    61 VAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFE 120
               G    I+++D VG++W   N C +  H F F+   +D + +    R        S  +
Sbjct:   209 --GEAISIEKIDSVGEYWLLTNKCKMGRHIFNFSLNHIDSLMAKYTTRD----QPFSEVD 262

Query:   121 VISATIWKLLAKASEDSGPGVVTICRYNGQRENETASN-DMVLSTAEVDFDVSKSDVWEL 179
             ++ A IWK L     ++   V+TIC    ++++ T  N D+V+S  E + ++    + EL
Sbjct:   263 ILYALIWKSLLNIRGETNTNVITIC---DRKKSSTCWNEDLVISVVEKNDEMV--GISEL 317

Query:   180 STLIADKRKDVD---EKVLSE---SSDFIMYGANLTFVDMEEADVYGLKLQGQKPVDVNY 233
             + LIA ++++ +   ++++ +   SSDF  YGANLTFV+++E D+Y L++ G KP  VNY
Sbjct:   318 AALIAGEKREENGAIKRMIEQDKGSSDFFTYGANLTFVNLDEIDMYELEINGGKPDFVNY 377

Query:   234 SINGVGEQGVVLVLAGPEEDSGRGRDRGSTVTVVLPENQLEKLMNEL 280
             +I+GVG++GVVLV   P+++  R       V+VV+PE  L KL  E+
Sbjct:   378 TIHGVGDKGVVLVF--PKQNFAR------IVSVVMPEEDLAKLKEEV 416

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016740 "transferase activity" evidence=ISS

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IDA

GO:0010025 "wax biosynthetic process" evidence=IMP

TAIR\|locus:2119480 CER26 "ECERIFERUM 26" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2076136 CER26-LIKE "AT3G23840" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		287
pfam02458		432	pfam02458, Transferase, Transferase family	0.003
PLN03157		447	PLN03157, PLN03157, spermidine hydroxycinnamoyl tr	0.004

>gnl\|CDD\|217048 pfam02458, Transferase, Transferase family	Back alignment and domain information

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 52/306 (16%), Positives = 93/306 (30%), Gaps = 59/306 (19%)

Query: 1   MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRVPP-------KSLHEPEPEPEPEKSETET 53
            ++G S  H + D +S S F++ WA++  G   P       + L  P   P+ +      
Sbjct: 147 FAIGCSVNHAIADGYSLSTFMNSWAELARGGKKPSVTPVFRRELLLPRNPPQVK------ 200

Query: 54  QTRASESVAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREA 113
                       +     D             + + +F F K  +  +   L+ +    +
Sbjct: 201 ------------FDHHEFDIFPPE-PITTLDEVVSKSFVFEKLSISALEK-LKTKANSSS 246

Query: 114 --AAVSHFEVISATIWKLLAKA--SEDSGPGVVTIC-----RYNGQRENETASNDMVLST 164
                + FEV++A +W+   KA   +     V+        R N         N      
Sbjct: 247 NGKPRTRFEVVTALLWRCATKARKLDPEEETVLGQAVNIRSRLNPPLPPGYFGNAYFSVV 306

Query: 165 A-EVDFDVSKSD-VWELSTLIADKRKDVDEKVLSESSD-------------FIMYGANLT 209
           A     ++  +   W    +   K+K +D++ L    D                      
Sbjct: 307 AKSTAAELESNPLGWIAELVKEAKKKVIDDEYLESVIDWVENSLPLKGFYEGTKDDPAFL 366

Query: 210 FVDMEEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPEEDSGRGRDRGSTVTVVLP 269
                    Y +     KPV V   +   G+  ++            G D G  V V LP
Sbjct: 367 VSSWCRFPFYEVDFGWGKPVYVGPVVPPFGDIVLL--------IPSPGDDGGVEVAVCLP 418

Query: 270 ENQLEK 275
           E  + K
Sbjct: 419 EEAMSK 424

This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis. Deacetylvindoline 4-O-acetyltransferase EC:2.3.1.107 catalyzes the last step in vindoline biosynthesis is also a member of this family. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase. Length = 432

>gnl\|CDD\|178702 PLN03157, PLN03157, spermidine hydroxycinnamoyl transferase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		287
PLN02663		431	hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinn	100.0
PLN03157		447	spermidine hydroxycinnamoyl transferase; Provision	100.0
PLN02481		436	Omega-hydroxypalmitate O-feruloyl transferase	100.0
PLN00140		444	alcohol acetyltransferase family protein; Provisio	100.0
PF02458		432	Transferase: Transferase family; InterPro: IPR0034	100.0
PRK09294		416	acyltransferase PapA5; Provisional	98.57
PF07247		480	AATase: Alcohol acetyltransferase; InterPro: IPR01	98.12
COG4908		439	Uncharacterized protein containing a NRPS condensa	97.74
TIGR02946		446	acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b	97.65
PF00668		301	Condensation: Condensation domain; InterPro: IPR00	95.87
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	93.46
PRK12316		5163	peptide synthase; Provisional	92.57
PRK12467		3956	peptide synthase; Provisional	90.74
PRK12467		3956	peptide synthase; Provisional	86.27
PRK12316		5163	peptide synthase; Provisional	86.15
PRK05691		4334	peptide synthase; Validated	81.63

>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase	Back alignment and domain information

Probab=100.00  E-value=1.9e-48  Score=364.63  Aligned_cols=260  Identities=17%  Similarity=0.277  Sum_probs=204.0

Q ss_pred             CeeeeeeeccccCHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCC--CCCccccccccccCccccCCCCCccccCCCCCC
Q 023125            1 MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRV-PPKSLHEPEPEP--EPEKSETETQTRASESVAGNLYPIKRVDPVGDH   77 (287)
Q Consensus         1 ~~lg~~~~H~v~Dg~~~~~fl~aWa~~~rg~~-p~~~~~~~~~l~--~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (287)
                      ++||+++||.++||.|+.+|+++||++|||.. ...|.+++..+.  .||...     +.| ..+..+...+      ..
T Consensus       145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg~~~~~~p~~dr~~l~~~~p~~~~-----~~~-~~~~~~~~~~------~~  212 (431)
T PLN02663        145 VSLGVGMQHHAADGFSGLHFINTWSDMARGLDLTIPPFIDRTLLRARDPPQPA-----FHH-VEYQPPPSMK------TP  212 (431)
T ss_pred             EEEEEEecccccchHHHHHHHHHHHHHhcCCCCCCCCccCccccCCCCCCCCC-----ccc-ccccCCCccc------cc
Confidence            58999999999999999999999999999986 445667776542  233332     111 1111100110      00


Q ss_pred             CCCCCCCceeEEEEEeCHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhcc--CCCcEEEEEecCCCC----
Q 023125           78 WQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKASED--SGPGVVTICRYNGQR----  151 (287)
Q Consensus        78 ~~~~~~~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~~~~~S~~dal~A~~W~~~~~ar~~--~~~~~l~~~vd~R~r----  151 (287)
                      ......++...++|+|++++|++||+.+.+...  ..++|++|+|+||+|+|++||+..  ++.+.+.+++|+|+|    
T Consensus       213 ~~~~~~~~~~~~~f~fs~~~i~~LK~~~~~~~~--~~~~S~~dalsA~lW~~~~rA~~~~~~~~~~~~~~vd~R~rl~p~  290 (431)
T PLN02663        213 LETSKPENTTVSIFKLTRDQLNTLKAKSKEDGN--TISYSSYEMLAGHVWRSACKARGLPDDQETKLYIATDGRSRLRPQ  290 (431)
T ss_pred             cccCCCCCceEEEEEECHHHHHHHHhhCcccCC--CcccchHHHHHHHHHhhhhhcccCCCccceEEEEEecCCcCCCCC
Confidence            000113467889999999999999999865321  256899999999999999999976  458899999999999    


Q ss_pred             -CCCCCCcceEEeeeeec-ccccCCCHHHHHHHHHHHHhhhhHhhhhcccccee-------e--------CCcEEEEeCC
Q 023125          152 -ENETASNDMVLSTAEVD-FDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIM-------Y--------GANLTFVDME  214 (287)
Q Consensus       152 -~~~y~GN~~~~~~~~~~-~~l~~~~l~~~A~~ir~a~~~~~~~~~~~~~d~~~-------~--------g~~~~~tsw~  214 (287)
                       |++|+||++..+.+.++ +++..++|..+|..||+++++++++|+++.+|+.+       +        +.++.+|||+
T Consensus       291 lp~~Y~GN~~~~~~~~~~~~el~~~~l~~~a~~ir~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~  370 (431)
T PLN02663        291 LPPGYFGNVIFTATPIAVAGELQSKPTWYAAGKIHDALVRMDDDYLRSALDYLELQPDLSALVRGAHTFRCPNLGITSWV  370 (431)
T ss_pred             CCCCcccceEEecccccchhhhhhCCHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCcccchhhcccCcCcCCcEEecccC
Confidence             56899999999888776 78888999999999999999999999988665431       1        2368999999


Q ss_pred             CCcccceecCCCCceeEEEeecccCcccEEEEEcCCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHhh
Q 023125          215 EADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPEEDSGRGRDRGSTVTVVLPENQLEKLMNELNQ  282 (287)
Q Consensus       215 ~~~~y~~DFG~G~P~~v~~~~~~~~~~g~~~ilp~~~~~g~~~~~~g~ev~v~L~~~~m~~l~~~~~~  282 (287)
                      ++++|++|||||||+++++.  ....+|.+++||++.++|      |++|.|+|++++|++|++++++
T Consensus       371 ~~~~y~~DFGwGkP~~v~~~--~~~~~g~~~~~p~~~~~g------~iev~v~L~~~~m~~f~~~~~~  430 (431)
T PLN02663        371 RLPIYDADFGWGRPIFMGPG--GIAYEGLSFILPSPTNDG------SLSVAISLQSEHMKLFEKFLYE  430 (431)
T ss_pred             CCCccccccCCCcccccccc--cccCCCeEEEeccCCCCC------cEEEEEECCHHHHHHHHHHHhh
Confidence            99999999999999998774  233469999999876544      7999999999999999998764

>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional	Back alignment and domain information

>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase	Back alignment and domain information

>PLN00140 alcohol acetyltransferase family protein; Provisional	Back alignment and domain information

>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes	Back alignment and domain information

>PRK09294 acyltransferase PapA5; Provisional	Back alignment and domain information

>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2	Back alignment and domain information

>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]	Back alignment and domain information

>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT	Back alignment and domain information

>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		287
2bgh_A		421	Vinorine synthase; VS, BAHD, acetyltransferase, au	8e-14
2e1v_A		454	Acyl transferase; BAHD superfamily, seleno-methion	2e-13
4g22_A		439	Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn	3e-13
2xr7_A		453	Malonyltransferase; xenobiotics, naphthols; HET: M	1e-11
2rkv_A		451	Trichothecene 3-O-acetyltransferase; BAHD superfam	4e-11

>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina} Length = 421	Back alignment and structure

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 45/307 (14%), Positives = 85/307 (27%), Gaps = 74/307 (24%)

Query: 1   MSLGLSWAHVLGDPFSASAFVSMWAQIMAGR----VPPKSLHEPEPEPEPEKSETETQTR 56
            ++G++ +H + D  S + F++ W     G     +P   L      P       E    
Sbjct: 152 TAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPNFDLAARHFPPVDNTPSPE---- 207

Query: 57  ASESVAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAV 116
                                     + N+    F F K+++  + +        E    
Sbjct: 208 -----------------------LVPDENVVMKRFVFDKEKIGALRAQASSAS--EEKNF 242

Query: 117 SHFEVISATIWKLLAKASE-DSGPGVVTI------CR----------YNGQRENETASND 159
           S  +++ A IWK +   +    G     +       R            G        N 
Sbjct: 243 SRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMG--------NI 294

Query: 160 MVLSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDF------IMYGANLTFVDM 213
             L  A VD      D  +L   +    +  ++    E          +     L+F   
Sbjct: 295 ATLLFAAVD-AEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQELLSFTSW 353

Query: 214 EEADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPEEDSGRGRDRGSTVTVVLPENQL 273
                Y L     KP+          ++   L++     D       G    + + E+++
Sbjct: 354 CRLGFYDLDFGWGKPLSA--CTTTFPKRNAALLMDTRSGD-------GVEAWLPMAEDEM 404

Query: 274 EKLMNEL 280
             L  EL
Sbjct: 405 AMLPVEL 411

PyMOL of 2bgh

>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A Length = 454	Back alignment and structure

>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A Length = 439	Back alignment and structure

>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum} Length = 453	Back alignment and structure

>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* Length = 451	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		287
4g22_A		439	Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn	100.0
2e1v_A		454	Acyl transferase; BAHD superfamily, seleno-methion	100.0
2xr7_A		453	Malonyltransferase; xenobiotics, naphthols; HET: M	100.0
2rkv_A		451	Trichothecene 3-O-acetyltransferase; BAHD superfam	100.0
2bgh_A		421	Vinorine synthase; VS, BAHD, acetyltransferase, au	100.0
1q9j_A		422	PAPA5, polyketide synthase associated protein 5; c	97.71
1l5a_A		436	Amide synthase, VIBH; nonribosomal peptide synthet	97.29
2jgp_A		520	Tyrocidine synthetase 3; multifunctional enzyme, a	97.18
4hvm_A		493	Tlmii; PSI-biology, midwest center for structural	96.78
3fot_A		519	15-O-acetyltransferase; fusarium head blight, tric	96.39
2xhg_A		466	Tyrocidine synthetase A; isomerase, nonribosomal p	96.21
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	95.23

>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A	Back alignment and structure

Probab=100.00  E-value=3.8e-51  Score=382.45  Aligned_cols=263  Identities=16%  Similarity=0.245  Sum_probs=207.3

Q ss_pred             CeeeeeeeccccCHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCC--CCCccccccccccCccccCCCCCccccCCCCCC
Q 023125            1 MSLGLSWAHVLGDPFSASAFVSMWAQIMAGRV-PPKSLHEPEPEP--EPEKSETETQTRASESVAGNLYPIKRVDPVGDH   77 (287)
Q Consensus         1 ~~lg~~~~H~v~Dg~~~~~fl~aWa~~~rg~~-p~~~~~~~~~l~--~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (287)
                      ++||+++||.++||.|+.+|+++||++|||.. ...|.+|+..+.  +||...+     .| .++.++.....  .....
T Consensus       150 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~rg~~~~~~P~~dr~~l~~~~pp~~~~-----~~-~~~~~~~~~~~--~~~~~  221 (439)
T 4g22_A          150 VSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQF-----QH-IEYQPPPALAV--SPQTA  221 (439)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHHHHHHHHTTCCCSSCCBCCGGGGCCCSSCCCSS-----CC-GGGSCCC-----------
T ss_pred             EEEEEEeeeccCcHHHHHHHHHHHHHHhCCCCCCCCCccccccccCCCCCCCCc-----Cc-ccccCCCCCcc--ccccc
Confidence            58999999999999999999999999999986 345677876552  3444422     22 23332111110  00000


Q ss_pred             CCCCCCCceeEEEEEeCHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhcc--CCCcEEEEEecCCCC----
Q 023125           78 WQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKASED--SGPGVVTICRYNGQR----  151 (287)
Q Consensus        78 ~~~~~~~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~~~~~S~~dal~A~~W~~~~~ar~~--~~~~~l~~~vd~R~r----  151 (287)
                      +..+ ..++.+++|+|++++|++||+.+.++..  ..++|+||+|+||+|+|++|||+.  ++.+.+.++||+|+|    
T Consensus       222 ~~~~-~~~~~~~~f~fs~~~i~~LK~~a~~~~~--~~~~St~dal~A~iWr~~~rAr~~~~~~~~~l~~~vd~R~rl~Pp  298 (439)
T 4g22_A          222 ASDS-VPETAVSIFKLTREQISALKAKSKEDGN--TISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPS  298 (439)
T ss_dssp             -------CEEEEEEEECHHHHHHHHHGGGGGGC--CCCCCHHHHHHHHHHHHHHHHTTCCTTCEEEEEEEEECTTTSSSC
T ss_pred             ccCC-cccceEEEEEECHHHHHHHHHHhhccCC--CCCccHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcccCCCCCC
Confidence            0100 1468999999999999999999976542  257999999999999999999986  457899999999999    


Q ss_pred             -CCCCCCcceEEeeeeec-ccccCCCHHHHHHHHHHHHhhhhHhhhhcccccee--------------e-CCcEEEEeCC
Q 023125          152 -ENETASNDMVLSTAEVD-FDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIM--------------Y-GANLTFVDME  214 (287)
Q Consensus       152 -~~~y~GN~~~~~~~~~~-~~l~~~~l~~~A~~ir~a~~~~~~~~~~~~~d~~~--------------~-g~~~~~tsw~  214 (287)
                       |++|+||++..+.+.++ +|+.+.+|+.+|.+||+++++++++|+++.+||+.              + +.++.+|||+
T Consensus       299 lp~~Y~GN~v~~~~~~~~~~el~~~~L~~~A~~Ir~ai~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~  378 (439)
T 4g22_A          299 LPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWV  378 (439)
T ss_dssp             CCTTBCSCCEEEECCEEEHHHHHHSCHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCSCSTTCCCCHHHHCTTCEEEEECT
T ss_pred             CCCCcccceeehhhcceEHHHHhhCcHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCccchhhcccCCcCcCCcEEEeecC
Confidence             56799999999998887 78989999999999999999999999987666532              1 2479999999


Q ss_pred             CCcccceecCCCCceeEEEeecccCcccEEEEEcCCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHhh
Q 023125          215 EADVYGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPEEDSGRGRDRGSTVTVVLPENQLEKLMNELNQ  282 (287)
Q Consensus       215 ~~~~y~~DFG~G~P~~v~~~~~~~~~~g~~~ilp~~~~~g~~~~~~g~ev~v~L~~~~m~~l~~~~~~  282 (287)
                      |+++|++|||||||+++++.  ....+|.++++|+++++|      |++|.|+|++++|++|++++++
T Consensus       379 r~~~y~~DFGwGkP~~~~~~--~~~~~g~~~~~p~~~~~g------gi~v~v~L~~~~m~~f~~~~~~  438 (439)
T 4g22_A          379 RLPIHDADFGWGRPIFMGPG--GIAYEGLSFILPSPTNDG------SMSVAISLQGEHMKLFQSFLYD  438 (439)
T ss_dssp             TSCTTCCCCSSCCCSEEEES--SCCSTTEEEEEECTTCSS------CEEEEEEEEHHHHHHHHHHHTC
T ss_pred             cCCccccccCCCCcceeecc--ccCCCcEEEEeecCCCCC------cEEEEEECCHHHHHHHHHHhcc
Confidence            99999999999999998874  333569999999876544      7999999999999999998875

PyMOL of 4g22

>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A	Back alignment and structure

>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}	Back alignment and structure

>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*	Back alignment and structure

>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}	Back alignment and structure

>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2	Back alignment and structure

>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2	Back alignment and structure

>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}	Back alignment and structure

>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}	Back alignment and structure

>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*	Back alignment and structure

>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		287
d1q9ja2		238	Polyketide synthase associated protein 5, PapA5 {M	95.29
d1q9ja1		175	Polyketide synthase associated protein 5, PapA5 {M	91.11
d1l5aa2		250	VibH {Vibrio cholerae [TaxId: 666]}	84.68

>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: NRPS condensation domain (amide synthase)
domain: Polyketide synthase associated protein 5, PapA5
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.29  E-value=0.21  Score=39.29  Aligned_cols=127  Identities=13%  Similarity=0.010  Sum_probs=80.6

Q ss_pred             eEEEEEeCHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccC-CCcEEEEEecCCCC-CC----CCCCcce
Q 023125           87 KTHTFQFTKKQLDQMASNLRYRGIREAAAVSHFEVISATIWKLLAKASEDS-GPGVVTICRYNGQR-EN----ETASNDM  160 (287)
Q Consensus        87 ~~~~f~~s~~~l~~Lk~~~~~~~~~~~~~~S~~dal~A~~W~~~~~ar~~~-~~~~l~~~vd~R~r-~~----~y~GN~~  160 (287)
                      ....+.||++.-++|++.|.+.      .+|.+.++.|.+-..+.+-.+.. ....+...++.|++ .+    +.+||.+
T Consensus        32 ~~~~~~ls~~~t~~l~~~~~~~------~~T~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~G~~~  105 (238)
T d1q9ja2          32 PVTRLWLSKQQTSDLMAFGREH------RLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLL  105 (238)
T ss_dssp             CEEEECCCHHHHHHHHHHHTTT------TCCHHHHHHHHHHHHHHHHHTCSSCCEEEEEEEETTTTSSSCCCTTTBSCCE
T ss_pred             ceEEEEeCHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHhCCCCccccccccccccccccCccccceeEeee
Confidence            4566799999999999999754      47999999987766655544432 34566777999988 32    4678876


Q ss_pred             EEeeeeecccccCCCHHHHHHHHHHHHhhh-hHhhh-hccccce--------eeCCcEEEEeCCCCcccc
Q 023125          161 VLSTAEVDFDVSKSDVWELSTLIADKRKDV-DEKVL-SESSDFI--------MYGANLTFVDMEEADVYG  220 (287)
Q Consensus       161 ~~~~~~~~~~l~~~~l~~~A~~ir~a~~~~-~~~~~-~~~~d~~--------~~g~~~~~tsw~~~~~y~  220 (287)
                      ......... -.+.++.++++.+++.+... ...+. ...++..        .+...+.++|...++...
T Consensus       106 ~~~~~r~~~-~~~~~~~~l~~~v~~~l~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~  174 (238)
T d1q9ja2         106 GAASYLAEI-GPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMR  174 (238)
T ss_dssp             EEEEEEECC-CSSCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGGGGGCCCSSSCCCEEEECCCCCCSCC
T ss_pred             eeEEEEEec-CCCCCHHHHHHHHHHHHHHHHhcccccHHHHhhhhhcccCCccCCceeeeeccccccccc
Confidence            555544431 12457899999998887763 22222 2222111        111347888876665443

PyMOL of d1q9ja2

>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure