Citrus Sinensis ID: 023132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Secondary Structure (PSIPRED)
cccccccccHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccHHHHcccccccEEcccEEccccEEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHcccccHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mylkkplwsegvEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVaesdstihffcqsqsvpelqdSVDERVTSLdhiftvdpmrvtspstDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSlmldssanqldfeACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGhvngrqlspmatIHEDIRRLLGEKSASLIWAASqfgstlnpEERLMALHIQARRVLESLDLY
Flexible Loop (DISEMBL)
mylkkplwsegvEKQMESETETAAATAVGElanslkqqrVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSVDERVTSLDHiftvdpmrvtspSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHvngrqlspMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Low Complexity Region (SEG)
MYLKKPLWSEGVEKQMesetetaaataVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENlrlrcgefllllIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Disordered region (IsUnstruct)
***************************************VQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSV******VDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARR********
Disordered Region (DISOPRED)
***K*PL****************************K*QRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAE**STIHFFCQSQSVPELQDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGH*************EDIRRLLGEKSASLIWAASQFGSTLN*EE***ALHIQARRVLESLDLY
Disordered Region (DISEMBL)
MYLKKPLWS**************AATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Disordered Region (DISPRO)
**************************AVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
302143939	374	unnamed protein product [Vitis vinifera]	1.0	0.767	0.738	1e-124
225455310	298	PREDICTED: uncharacterized protein LOC10	1.0	0.963	0.738	1e-124
449456405	304	PREDICTED: uncharacterized protein LOC10	1.0	0.944	0.726	1e-122
55956221	294	impaired sucrose induction 1-like protei	0.986	0.962	0.728	1e-121
55956223	310	impaired sucrose induction 1-like protei	0.951	0.880	0.728	1e-117
30687718	305	impaired sucrose induction 1 protein [Ar	1.0	0.940	0.681	1e-116
388513219	296	unknown [Lotus japonicus]	0.972	0.942	0.703	1e-115
363806946	309	uncharacterized protein LOC100808750 [Gl	1.0	0.928	0.695	1e-114
224125694	308	predicted protein [Populus trichocarpa]	1.0	0.931	0.691	1e-113
357474329	306	Impaired sucrose induction 1-like protei	1.0	0.937	0.669	1e-112

>gi|302143939|emb|CBI23044.3| unnamed protein product [Vitis vinifera]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/298 (73%), Positives = 252/298 (84%), Gaps = 11/298 (3%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKK LWSE +      +     ATAVG+L  SL +QR+ RE+TLALRTGLR+ARAEFS
Sbjct: 77  MYLKKALWSESMATPESDQKAPYPATAVGDLVTSLNRQRLYREVTLALRTGLREARAEFS 136

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ-----------DSVDERVTSLDH 109
           FLRVRGLRS+LK LRSVAESDSTI+ FC SQS+PELQ              ++ V +LDH
Sbjct: 137 FLRVRGLRSILKFLRSVAESDSTINLFCHSQSIPELQVVPVLFQNSLKQYEEDTVANLDH 196

Query: 110 IFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQ 169
           IF V+PM+++SPSTDAEVALALRVLEGCCLLHRES I AH+HKAI+ILM+ILSTRG LEQ
Sbjct: 197 IFGVEPMKISSPSTDAEVALALRVLEGCCLLHRESTIFAHQHKAIEILMDILSTRGVLEQ 256

Query: 170 GACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNG 229
           GACLDAL S+MLDSSANQ+DFE+C+GIEEVA +IRDKQVDENLR++CGEFLLLLIGHVNG
Sbjct: 257 GACLDALISIMLDSSANQMDFESCDGIEEVAHIIRDKQVDENLRMKCGEFLLLLIGHVNG 316

Query: 230 RQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY 287
           R+  P+A IHED+RRLLGEKSASLIWAASQFGSTL+PE+RL ALHIQARRVLESLDLY
Sbjct: 317 RERPPLARIHEDVRRLLGEKSASLIWAASQFGSTLDPEQRLTALHIQARRVLESLDLY 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455310|ref|XP_002275469.1| PREDICTED: uncharacterized protein LOC100241859 [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/298 (73%), Positives = 252/298 (84%), Gaps = 11/298 (3%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKK LWSE +      +     ATAVG+L  SL +QR+ RE+TLALRTGLR+ARAEFS
Sbjct: 1   MYLKKALWSESMATPESDQKAPYPATAVGDLVTSLNRQRLYREVTLALRTGLREARAEFS 60

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ-----------DSVDERVTSLDH 109
           FLRVRGLRS+LK LRSVAESDSTI+ FC SQS+PELQ              ++ V +LDH
Sbjct: 61  FLRVRGLRSILKFLRSVAESDSTINLFCHSQSIPELQVVPVLFQNSLKQYEEDTVANLDH 120

Query: 110 IFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQ 169
           IF V+PM+++SPSTDAEVALALRVLEGCCLLHRES I AH+HKAI+ILM+ILSTRG LEQ
Sbjct: 121 IFGVEPMKISSPSTDAEVALALRVLEGCCLLHRESTIFAHQHKAIEILMDILSTRGVLEQ 180

Query: 170 GACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNG 229
           GACLDAL S+MLDSSANQ+DFE+C+GIEEVA +IRDKQVDENLR++CGEFLLLLIGHVNG
Sbjct: 181 GACLDALISIMLDSSANQMDFESCDGIEEVAHIIRDKQVDENLRMKCGEFLLLLIGHVNG 240

Query: 230 RQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY 287
           R+  P+A IHED+RRLLGEKSASLIWAASQFGSTL+PE+RL ALHIQARRVLESLDLY
Sbjct: 241 RERPPLARIHEDVRRLLGEKSASLIWAASQFGSTLDPEQRLTALHIQARRVLESLDLY 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456405|ref|XP_004145940.1| PREDICTED: uncharacterized protein LOC101204796 [Cucumis sativus] gi|449531007|ref|XP_004172479.1| PREDICTED: uncharacterized protein LOC101231506 [Cucumis sativus]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/304 (72%), Positives = 253/304 (83%), Gaps = 17/304 (5%)

Query: 1   MYLKKPLWSEGVEKQM------ESETETAAATAVGELANSLKQQRVQREITLALRTGLRD 54
           MYLKK LW++G+          + ++ +A ++AVGEL NSL +QR+ RE+T ALRTGLRD
Sbjct: 1   MYLKKALWTDGLTPNPSADSLPDDQSASATSSAVGELVNSLNRQRLFREVTFALRTGLRD 60

Query: 55  ARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ-----------DSVDER 103
           A AEFSFLRV GLRSLLK LRS+AES+STI  FCQ+QSVPELQ           +S D+ 
Sbjct: 61  ASAEFSFLRVCGLRSLLKSLRSIAESNSTIELFCQTQSVPELQVVPVLFQQSLKESEDDP 120

Query: 104 VTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILST 163
           V +LDHIF V+P+++ SPSTDAEVALALRVLEGCCLLHRES  LAH+HKAI +LMNILS 
Sbjct: 121 VVNLDHIFGVEPLKIASPSTDAEVALALRVLEGCCLLHRESTALAHQHKAIPVLMNILSI 180

Query: 164 RGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLL 223
           RG LEQGACLDAL S+MLDSSANQ+DFE CNGIEEVA LIRDKQ+DENLRL+CGEFLLLL
Sbjct: 181 RGILEQGACLDALISVMLDSSANQMDFEVCNGIEEVAVLIRDKQIDENLRLKCGEFLLLL 240

Query: 224 IGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLES 283
           IGHVNGR   P+ATIHEDIR+LLGEKSASLIWAASQFGSTL+PE+RL ALHIQARRVLES
Sbjct: 241 IGHVNGRGRPPLATIHEDIRQLLGEKSASLIWAASQFGSTLDPEQRLTALHIQARRVLES 300

Query: 284 LDLY 287
           LDLY
Sbjct: 301 LDLY 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55956221|emb|CAG26906.1| impaired sucrose induction 1-like protein [Solanum tuberosum]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/298 (72%), Positives = 250/298 (83%), Gaps = 15/298 (5%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLK P WS    K   SE++T + +AV EL +SL++QR+ RE+TLALRTGL DARAEFS
Sbjct: 1   MYLKAPFWS----KDSNSESQTESPSAVAELISSLERQRLYREVTLALRTGLSDARAEFS 56

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ-----------DSVDERVTSLDH 109
           FLR+RGLR +LK LRSVAESD+TI+ FC SQS+P+LQ           D+ D+ VTSLDH
Sbjct: 57  FLRIRGLRVILKFLRSVAESDTTINLFCHSQSIPDLQVVPVLFRHSLRDTEDQNVTSLDH 116

Query: 110 IFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQ 169
           IFTV+PM +TSPSTD+EV+LALRVLEGCCL+H ES +LAH++KAI +LMNILSTRG L Q
Sbjct: 117 IFTVEPMEITSPSTDSEVSLALRVLEGCCLIHCESNVLAHQYKAIPVLMNILSTRGVLGQ 176

Query: 170 GACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNG 229
           GACLDAL ++MLDSSANQ DFEACNGIEEVA LIRDKQVDE LRL+CGEFLLLLIGHVNG
Sbjct: 177 GACLDALIAIMLDSSANQADFEACNGIEEVAILIRDKQVDEKLRLKCGEFLLLLIGHVNG 236

Query: 230 RQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY 287
           R+  PMATIHEDIRR LGEKSASLIWAASQFGSTL+PE+RL AL IQ RRVLES+DLY
Sbjct: 237 RERPPMATIHEDIRRFLGEKSASLIWAASQFGSTLDPEQRLTALQIQGRRVLESIDLY 294

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55956223|emb|CAG26907.1| impaired sucrose induction 1-like protein [Mesembryanthemum crystallinum]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/284 (72%), Positives = 243/284 (85%), Gaps = 11/284 (3%)

Query: 15  QMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKIL 74
           Q+ES + +AA  AV EL  SL Q ++ RE+TL+LR+GLRDARAEFSFLRVRGLR LLK L
Sbjct: 25  QVESPSTSAAMAAVEELVESLTQAKLYREVTLSLRSGLRDARAEFSFLRVRGLRCLLKFL 84

Query: 75  RSVAESDSTIHFFCQSQSVPELQ-----------DSVDERVTSLDHIFTVDPMRVTSPST 123
           RSVA+SDSTI  FC +QS+P+LQ           ++ +ERV +LDHIFTV+PM++TSPST
Sbjct: 85  RSVADSDSTIRLFCLTQSIPDLQVVPALFEHSLKETEEERVANLDHIFTVEPMKLTSPST 144

Query: 124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDS 183
           D EVALALRVLEGCCL+HR+S I AH+HKAI +LMNILS RG LEQGACLDAL +LMLDS
Sbjct: 145 DTEVALALRVLEGCCLIHRQSTIFAHQHKAILVLMNILSNRGVLEQGACLDALIALMLDS 204

Query: 184 SANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIR 243
           +ANQ+DFE CNGIEEVA +IRDKQVDENLR++CGEFLLLLIGHV+GR++ PMA++HEDIR
Sbjct: 205 TANQMDFETCNGIEEVAAIIRDKQVDENLRMKCGEFLLLLIGHVDGREIQPMASVHEDIR 264

Query: 244 RLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY 287
           RLL EKSASLIWAASQFGSTL PEER+ ALHIQARRVLESLDL+
Sbjct: 265 RLLDEKSASLIWAASQFGSTLGPEERMTALHIQARRVLESLDLF 308

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687718|ref|NP_194505.2| impaired sucrose induction 1 protein [Arabidopsis thaliana] gi|28393094|gb|AAO41981.1| unknown protein [Arabidopsis thaliana] gi|28827484|gb|AAO50586.1| unknown protein [Arabidopsis thaliana] gi|55956219|emb|CAG26905.1| impaired sucrose induction 1 [Arabidopsis thaliana] gi|332659989|gb|AEE85389.1| impaired sucrose induction 1 protein [Arabidopsis thaliana]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/305 (68%), Positives = 252/305 (82%), Gaps = 18/305 (5%)

Query: 1   MYLKKPLWSEGVEKQME--SETET-----AAATAVGELANSLKQQRVQREITLALRTGLR 53
           MYLK+P+WS+G     E  SE+ET     AA+  V EL  SL  QR+ RE+TL+LRTGLR
Sbjct: 1   MYLKRPIWSDGASATPENPSESETGEESDAASMVVEELVTSLNTQRLYRELTLSLRTGLR 60

Query: 54  DARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ-----------DSVDE 102
           DA AEFSFLR+RGLRSLLK LR+VA+SDS I  F  +Q++ +LQ           ++ D+
Sbjct: 61  DACAEFSFLRIRGLRSLLKTLRTVADSDSIIRLFSHTQTISDLQLVPVLFQHSLKEAEDD 120

Query: 103 RVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILS 162
           +VTSLDHIF+V+PM++TSPSTDAEVA+ALRVLEGCCLLH +S +LAHKH A++++MN+LS
Sbjct: 121 KVTSLDHIFSVEPMKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKHGAVRVMMNVLS 180

Query: 163 TRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLL 222
           TRG LEQGACLDAL S++LDSSANQ+DF ACNGIEEVA L+RDKQ DENLRLRCGEFLLL
Sbjct: 181 TRGVLEQGACLDALISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENLRLRCGEFLLL 240

Query: 223 LIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLE 282
           L+GHVNG+  SP+A+++EDIRRLLGEKSASLIWAASQFGST +PE+R+ ALHIQA RVLE
Sbjct: 241 LVGHVNGKDRSPIASVNEDIRRLLGEKSASLIWAASQFGSTGDPEQRITALHIQAGRVLE 300

Query: 283 SLDLY 287
           SLDLY
Sbjct: 301 SLDLY 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513219|gb|AFK44671.1| unknown [Lotus japonicus]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/304 (70%), Positives = 240/304 (78%), Gaps = 25/304 (8%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKKPLWSEG+E   +         AV E+  SL+QQRV RE+TLALRTGLRDARAEFS
Sbjct: 1   MYLKKPLWSEGIESDSDG--------AVVEVVKSLQQQRVYREVTLALRTGLRDARAEFS 52

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ---------------DSVDERVT 105
           FLRVR LRS+L  LRSVA+SDSTI  F Q+QS+PELQ               D  + R+ 
Sbjct: 53  FLRVRALRSILNFLRSVADSDSTIDLFNQTQSIPELQVVPVLFQHSLKETGEDYTENRLG 112

Query: 106 SLDHIFTVD--PMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILST 163
            L HI  V+  P+++TSPSTD EVALALRVLEGCCLLH +S  LAH+H AI++LMNILS 
Sbjct: 113 DLTHILGVEVEPIKLTSPSTDHEVALALRVLEGCCLLHPQSTALAHQHNAIQVLMNILSN 172

Query: 164 RGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLL 223
           RG LEQGACLDAL SLM+DSS NQ+DFE CNGI EVA+LIRDKQVDENLRL+CGEFLLLL
Sbjct: 173 RGVLEQGACLDALISLMVDSSPNQMDFEKCNGIMEVADLIRDKQVDENLRLKCGEFLLLL 232

Query: 224 IGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLES 283
           IGHVNGR   P+ATIHED RRLLGEKSASLIWAASQFGSTL+PE+RL AL IQARRVLES
Sbjct: 233 IGHVNGRDSLPLATIHEDTRRLLGEKSASLIWAASQFGSTLDPEQRLTALQIQARRVLES 292

Query: 284 LDLY 287
           LDLY
Sbjct: 293 LDLY 296

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806946|ref|NP_001242053.1| uncharacterized protein LOC100808750 [Glycine max] gi|255636499|gb|ACU18588.1| unknown [Glycine max]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/309 (69%), Positives = 245/309 (79%), Gaps = 22/309 (7%)

Query: 1   MYLKKPLWSEGVEKQ---MESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARA 57
           MYLKKPLWSE  +      ++E E     AV E+  SL+QQRV RE+TLALRTGLRDARA
Sbjct: 1   MYLKKPLWSETGKDDGGSAKTEEEDHGDGAVSEVVKSLQQQRVYREVTLALRTGLRDARA 60

Query: 58  EFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ---------------DSVDE 102
           EFSF RVR LRS+LK LRSVAES STI  F Q+QS+P+LQ               D  +E
Sbjct: 61  EFSFPRVRALRSILKFLRSVAESGSTIDLFNQTQSIPQLQVVPVLFHHSLKESGDDDYNE 120

Query: 103 R---VTSLDHI-FTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILM 158
           +   V  L HI F V+PM++TSPSTDAEVALALRVLEGCCLLH +S  LAH+H AI++LM
Sbjct: 121 KKIKVGDLSHILFGVEPMKLTSPSTDAEVALALRVLEGCCLLHPQSTALAHQHNAIQVLM 180

Query: 159 NILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGE 218
           NILSTRG LEQGACLDAL SLM+DSS+NQ+DFE C+GI EVA+L+RDKQ+DENLRL+CGE
Sbjct: 181 NILSTRGVLEQGACLDALISLMVDSSSNQMDFEKCSGIMEVADLLRDKQLDENLRLKCGE 240

Query: 219 FLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQAR 278
           FLLLLIGHVNGR   P+ATIHED RRLLGEKSASLIWAASQFGSTL+PE+RL AL IQAR
Sbjct: 241 FLLLLIGHVNGRDAPPLATIHEDTRRLLGEKSASLIWAASQFGSTLDPEQRLTALQIQAR 300

Query: 279 RVLESLDLY 287
           RVLESLDLY
Sbjct: 301 RVLESLDLY 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125694|ref|XP_002329695.1| predicted protein [Populus trichocarpa] gi|222870603|gb|EEF07734.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/308 (69%), Positives = 255/308 (82%), Gaps = 21/308 (6%)

Query: 1   MYLKKPLWSEGVEKQMESETE---------TAAATAVGELANSLKQQRVQREITLALRTG 51
           M+LKKPLWS  +++  E  ++         +A ATAV EL NSL +QR+ RE+TLALRT 
Sbjct: 1   MHLKKPLWSTALKETREPSSDAEPQPQQPSSATATAVDELVNSLNKQRLYREVTLALRTS 60

Query: 52  LRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ-------DSVDE-- 102
           LRDARAEFSFLR+RGLRSLL  LRSVA+SDSTI+ FCQ+QS+P+LQ       +S+ E  
Sbjct: 61  LRDARAEFSFLRLRGLRSLLNFLRSVAQSDSTINLFCQTQSLPDLQVVPVLFQNSLKEGE 120

Query: 103 ---RVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMN 159
               V SL H+F V+PMR+TSPSTDAE+ALALRVLEGCCLLHRES + AH++KAI++LM 
Sbjct: 121 EEQNVESLSHVFGVEPMRITSPSTDAEIALALRVLEGCCLLHRESTVFAHQYKAIQVLMR 180

Query: 160 ILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEF 219
           +LSTRG LE+ ACLDAL S+MLDSS NQ+DFEACNGIEEV  +IRDKQVDENLRL+CGEF
Sbjct: 181 VLSTRGVLEKSACLDALISIMLDSSPNQMDFEACNGIEEVTVVIRDKQVDENLRLKCGEF 240

Query: 220 LLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARR 279
           +LLLIGH+NGR+ +PM +IHED+RRLLGEKSASLIWAASQFGST++PE+RLMAL IQARR
Sbjct: 241 MLLLIGHLNGRERAPMPSIHEDVRRLLGEKSASLIWAASQFGSTVDPEQRLMALQIQARR 300

Query: 280 VLESLDLY 287
           VLESLDLY
Sbjct: 301 VLESLDLY 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474329|ref|XP_003607449.1| Impaired sucrose induction 1-like protein [Medicago truncatula] gi|355508504|gb|AES89646.1| Impaired sucrose induction 1-like protein [Medicago truncatula]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/306 (66%), Positives = 239/306 (78%), Gaps = 19/306 (6%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAA----TAVGELANSLKQQRVQREITLALRTGLRDAR 56
           MYLKKPLWSEG+E   +  T ++++     +V EL NSL+QQRV RE+TLAL TGLRDAR
Sbjct: 1   MYLKKPLWSEGIETTKQDSTGSSSSSDPNASVVELVNSLQQQRVYREVTLALTTGLRDAR 60

Query: 57  AEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQ---------------DSVD 101
           AEFSFLR+R LRS+L  L S+A SDSTI+ F  +QS+P LQ               D   
Sbjct: 61  AEFSFLRLRALRSILNFLNSIAHSDSTIYLFNLTQSIPHLQVLPVLFQHSLKETGNDYNY 120

Query: 102 ERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL 161
            RV  + HIF V+PM++TSPSTD E+ALALRVLEGCCLLH  S  LAH+H A+++L+NIL
Sbjct: 121 SRVGDMSHIFGVEPMKLTSPSTDDEIALALRVLEGCCLLHPHSTTLAHQHNAVQVLLNIL 180

Query: 162 STRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLL 221
           STRG LEQ ACLDAL SLM+DSS NQ+DFE CNGI EVA+LIRDKQVDENLRL+CGEFL 
Sbjct: 181 STRGVLEQSACLDALISLMVDSSPNQMDFEKCNGIMEVADLIRDKQVDENLRLKCGEFLQ 240

Query: 222 LLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVL 281
           LLIGHVNGR   P+A+IHED RRLLGE SASLIWAASQFGSTL+PE+RL AL IQARR+L
Sbjct: 241 LLIGHVNGRDSPPLASIHEDTRRLLGETSASLIWAASQFGSTLDPEQRLTALQIQARRIL 300

Query: 282 ESLDLY 287
           ESLDLY
Sbjct: 301 ESLDLY 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2137757	305	ISI1 "IMPAIRED SUCROSE INDUCTI	0.905	0.852	0.667	1.2e-90

TAIR|locus:2137757 ISI1 "IMPAIRED SUCROSE INDUCTION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 181/271 (66%), Positives = 220/271 (81%)

Query:    28 VGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFF 87
             V EL  SL  QR+ RE+TL+LRTGLRDA AEFSFLR+RGLRSLLK LR+VA+SDS I  F
Sbjct:    35 VEELVTSLNTQRLYRELTLSLRTGLRDACAEFSFLRIRGLRSLLKTLRTVADSDSIIRLF 94

Query:    88 CQSQSVPELQ-----------DSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEG 136
               +Q++ +LQ           ++ D++VTSLDHIF+V+PM++TSPSTDAEVA+ALRVLEG
Sbjct:    95 SHTQTISDLQLVPVLFQHSLKEAEDDKVTSLDHIFSVEPMKITSPSTDAEVAVALRVLEG 154

Query:   137 CCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI 196
             CCLLH +S +LAHKH A++++MN+LSTRG LEQGACLDAL S++LDSSANQ+DF ACNGI
Sbjct:   155 CCLLHPQSTVLAHKHGAVRVMMNVLSTRGVLEQGACLDALISVLLDSSANQVDFGACNGI 214

Query:   197 EEVAELIRDKQVDENXXXXXXXXXXXXIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWA 256
             EEVA L+RDKQ DEN            +GHVNG+  SP+A+++EDIRRLLGEKSASLIWA
Sbjct:   215 EEVAMLMRDKQADENLRLRCGEFLLLLVGHVNGKDRSPIASVNEDIRRLLGEKSASLIWA 274

Query:   257 ASQFGSTLNPEERLMALHIQARRVLESLDLY 287
             ASQFGST +PE+R+ ALHIQA RVLESLDLY
Sbjct:   275 ASQFGSTGDPEQRITALHIQAGRVLESLDLY 305

GO:0005634 "nucleus" evidence=ISM

GO:0009745 "sucrose mediated signaling" evidence=IMP

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam08045	255	pfam08045, CDC14, Cell division control protein 14	3e-21

>gnl|CDD|219711 pfam08045, CDC14, Cell division control protein 14, SIN component

 Score = 89.7 bits (223), Expect = 3e-21
 Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 12/186 (6%)

Query: 48  LRTGLRDARAEFSFLRVRG-LRSLLKILRSVAESDSTIHFFCQSQSVPE---LQDSVDER 103
           +R GLR   +  + L              S   +   +       ++ E   LQD     
Sbjct: 20  IRKGLRQVESLLASLCPSISKTRNSDTRESALNARKVLELLRDDPALREFFKLQDGFQYN 79

Query: 104 VTS-----LDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILM 158
           + S     LD +  +          D  +  ALR+L+G  LLH  S  L  +   + +L+
Sbjct: 80  LASRLVTTLDRL--LGSGGNEQGQNDILILNALRLLQGLLLLHPPSRTLFSREANMNLLL 137

Query: 159 NILSTRGALE-QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCG 217
           ++L        Q A +  L  ++L +  N   FE  NG+  V  L +     + L  +  
Sbjct: 138 DLLEPANPPAIQVATISTLVHILLKNPTNTRTFERLNGLSTVISLFKLSSTQQELNFKII 197

Query: 218 EFLLLL 223
           EFL   
Sbjct: 198 EFLYFY 203

Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PF08045	257	CDC14: Cell division control protein 14, SIN compo	100.0
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	96.14
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	94.07
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	93.15
PF05536	543	Neurochondrin: Neurochondrin	89.9
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	84.83
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	84.46
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.91

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=100.00  E-value=1.9e-54  Score=392.41  Aligned_cols=233  Identities=30%  Similarity=0.407  Sum_probs=211.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHhchHHHHHHHhhhhccccchhhhhccCCchhhhhhh--------
Q 023132           29 GELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSV--------  100 (287)
Q Consensus        29 ~elv~sl~~qR~yRevtlaLR~gLRDA~AeFSFlR~rglr~ll~fl~s~a~sd~~i~LF~~sQs~~~lQ~~~--------  100 (287)
                      ||-.-++..++||+|.++++|+|||++++.|+|++.++.++.-++.|+++.++++|..|+++|+++|+|.-+        
T Consensus         1 ME~~ls~~~d~L~s~~~~~ir~GLrq~~~lL~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~eF~~LQ~~Fe~Nl~   80 (257)
T PF08045_consen    1 MESLLSLAFDNLYSEDTPKIRKGLRQLEGLLAQLCLSIRQSRNSSKRSSAASRKGLELFRDDPALREFQKLQEGFEWNLA   80 (257)
T ss_pred             CchHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccccccccccchhhccchhhhhcccchhHHHHHHhHHHhhcchh
Confidence            456778999999999999999999999999999999998888888899999999999999999999999333        


Q ss_pred             ccccccccccccCCC-ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHH-hhcCcchhhhHHHHHHH
Q 023132          101 DERVTSLDHIFTVDP-MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL-STRGALEQGACLDALTS  178 (287)
Q Consensus       101 ~~~V~~l~hi~g~ep-~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL-~~rg~leq~AcLDtLl~  178 (287)
                      ...|.++++++|.++ ++.++|++|.+|++||||||||||+||+|+.++||+++++++||+| .++++.+|+||||||+|
T Consensus        81 ~~Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~  160 (257)
T PF08045_consen   81 SRLVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVC  160 (257)
T ss_pred             hhhHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            568999999999999 8999999999999999999999999999999999999999999999 56899999999999999


Q ss_pred             HHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhccCCCCCCc------------ccHHHHHHHHh
Q 023132          179 LMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPM------------ATIHEDIRRLL  246 (287)
Q Consensus       179 llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~~------------a~~~ed~~~ll  246 (287)
                      +|+|+|+|+|+||+++|++.|++++|++++++++||||+||||||++++.++..+.-            -+-++++-+-.
T Consensus       161 iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~~~~~~~~~~~~t~~eKq~ll~~~  240 (257)
T PF08045_consen  161 ILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPGSSSSGSEGRATKTTEEKQELLGRY  240 (257)
T ss_pred             HHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCcccccccCCCcCcccHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999864321            23556666667


Q ss_pred             chhhHHHHHHhhhhc
Q 023132          247 GEKSASLIWAASQFG  261 (287)
Q Consensus       247 Ge~~asliwaa~~fg  261 (287)
                      +.++.++|-+...++
T Consensus       241 ~~~vd~Lv~dL~~~~  255 (257)
T PF08045_consen  241 LSNVDDLVEDLNELK  255 (257)
T ss_pred             cccHHHHHHHHHHhc
Confidence            777888887766554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=96.14  E-value=0.026  Score=41.42  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=83.2

Q ss_pred             CCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHH
Q 023132          121 PSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVA  200 (287)
Q Consensus       121 p~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va  200 (287)
                      .+++.-..-++..|...|-..+++....-+..+++.++++|....+-.+..++=+|--+.-+.+++...+.+.+++..+.
T Consensus        18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~   97 (120)
T cd00020          18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV   97 (120)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence            34466777799999999998888888888889999999999998888999999999999888888888898888999999


Q ss_pred             HHHhhcccccchhhhHHHHH
Q 023132          201 ELIRDKQVDENLRLRCGEFL  220 (287)
Q Consensus       201 ~llK~~qvd~~vRlKC~EFL  220 (287)
                      +++.+.  +.++|-.+..+|
T Consensus        98 ~~l~~~--~~~~~~~a~~~l  115 (120)
T cd00020          98 NLLDSS--NEDIQKNATGAL  115 (120)
T ss_pred             HHHhcC--CHHHHHHHHHHH
Confidence            999877  566776665554

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=94.07  E-value=0.18  Score=37.02  Aligned_cols=75  Identities=19%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             hhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhh
Q 023132          149 HKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       149 ~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~  225 (287)
                      .+...++.++++|....+.....++.+|-.+-.+++++...|-+.+|++.+.+++.+.  +.+++..|.-.|.-+..
T Consensus         4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA   78 (120)
T ss_pred             HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc
Confidence            3555788899999888778889999999999999999999999999999999999984  78999888888776643

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=1.8  Score=42.44  Aligned_cols=141  Identities=21%  Similarity=0.252  Sum_probs=109.6

Q ss_pred             ccCCchhhhhhh---cccccccccc------ccCCCccccCCCChHHH-HHHHHHHhhhcccCcchHHHhhhhHHHHHHH
Q 023132           89 QSQSVPELQDSV---DERVTSLDHI------FTVDPMRVTSPSTDAEV-ALALRVLEGCCLLHRESAILAHKHKAIKILM  158 (287)
Q Consensus        89 ~sQs~~~lQ~~~---~~~V~~l~hi------~g~ep~kitsp~TdsEi-aLALrVLeGccLLh~~s~~~a~r~~Avevll  158 (287)
                      +++++.|...+=   ...|.+.|+-      =|..|+---.-.+|++| ++|.|||--|.=+-|.|-..+=...|.+-|+
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            566666665222   2244444432      25555222344556666 6899999999999999999999999999999


Q ss_pred             HHHhhcCcchh-hhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhccCC
Q 023132          159 NILSTRGALEQ-GACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGR  230 (287)
Q Consensus       159 niL~~rg~leq-~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~~~~  230 (287)
                      -+|....+.+. +..|=|+-|++---++-+..|-..+|.+-..+++.+.+++..++.|-..++- |+..+..+
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~-~Ll~~~~s  244 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLS-LLLQEDKS  244 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHH-HHHHhhhh
Confidence            99999888877 7888899999999999999999999999999999999999999999875554 44444444

>PF05536 Neurochondrin: Neurochondrin

Probab=89.90  E-value=3.5  Score=41.75  Aligned_cols=139  Identities=19%  Similarity=0.187  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-----hhhhhhhhccHHHH
Q 023132          125 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-----NQLDFEACNGIEEV  199 (287)
Q Consensus       125 sEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~-----Nq~dFE~~~Gl~~V  199 (287)
                      +=+..++.+|.+.+ -|+.-+...-++.++..+..+... ++..+-..+-.|+.+|-+...     +...|...  +.++
T Consensus       114 ~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~i--l~~L  189 (543)
T PF05536_consen  114 ETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSI--LPSL  189 (543)
T ss_pred             hHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHH--HHHH
Confidence            56778999999999 888888888889999999999988 555566677777777777763     33333333  3566


Q ss_pred             HHHHhhcccccchhhhHHHHHHHHhhhcc--CCCCCCcccHHHHHHHHhchhhHHHHHHhh--hhcCCCChHHhHHHHHH
Q 023132          200 AELIRDKQVDENLRLRCGEFLLLLIGHVN--GRQLSPMATIHEDIRRLLGEKSASLIWAAS--QFGSTLNPEERLMALHI  275 (287)
Q Consensus       200 a~llK~~qvd~~vRlKC~EFLl~yl~~~~--~~~~~~~a~~~ed~~~llGe~~asliwaa~--~fgstlD~e~r~~aL~~  275 (287)
                      ++.++..+  .+.|..-++||..++-+..  +...++            ++++-+-||...  -+.|.+.|++|..+|+.
T Consensus       190 a~~fs~~~--~~~kfell~~L~~~L~~~~~~~~~~~~------------~~~W~~~l~~gl~~iL~sr~~~~~R~~al~L  255 (543)
T PF05536_consen  190 ARDFSSFH--GEDKFELLEFLSAFLPRSPILPLESPP------------SPKWLSDLRKGLRDILQSRLTPSQRDPALNL  255 (543)
T ss_pred             HHHHHhhc--cchHHHHHHHHHHhcCcCCccccccCC------------hhhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            77776443  4456666999999988883  222333            233334344333  46789999999999765


Q ss_pred             HHHHHHh
Q 023132          276 QARRVLE  282 (287)
Q Consensus       276 qA~~vle  282 (287)
                      -| -+++
T Consensus       256 aa-~Ll~  261 (543)
T PF05536_consen  256 AA-SLLD  261 (543)
T ss_pred             HH-HHHH
Confidence            44 3443

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=84.83  E-value=2.1  Score=36.98  Aligned_cols=118  Identities=25%  Similarity=0.243  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 023132          125 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  204 (287)
Q Consensus       125 sEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK  204 (287)
                      .=+..+.|+|...|--.+.-..+.++|..  .++.++.......-..-+|+|.+++=|.+.-...+.+-. ++++..+++
T Consensus        76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~--~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~  152 (207)
T PF01365_consen   76 ELFRLCYRLLRQFCRGNRENQKYLFKHLD--FLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLR  152 (207)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHH-------HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHh--HHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHH
Confidence            33467899999999998888888888755  235555554444445679999999999999999998877 999999999


Q ss_pred             hcccccchhhhHHHHHHHHhhhccCCCCCCcccHHHHHH-HHhchhhHHH
Q 023132          205 DKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIR-RLLGEKSASL  253 (287)
Q Consensus       205 ~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~~a~~~ed~~-~llGe~~asl  253 (287)
                      ..|.+..       ||-|+-.=.. .++.|+...|+=|. .++.++-|.+
T Consensus       153 ~~gr~~~-------~L~~L~~lc~-~~g~pI~~nQ~lI~~~ll~~~~~dl  194 (207)
T PF01365_consen  153 KHGRQPR-------YLDFLSSLCV-CNGNPIPENQNLICQELLLEGEADL  194 (207)
T ss_dssp             --------------------------------------------------
T ss_pred             HcCCChH-------HHHHHhhhcc-cCCcCCHHHHHHHHHHHcCCCCccE
Confidence            9774432       5555443333 24557777887776 6776554444

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=84.46  E-value=9.2  Score=31.49  Aligned_cols=118  Identities=18%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch--hhHHHhchHHHHHHHhhhhccccchhhhhccCCchhhhhhhccc
Q 023132           26 TAVGELANSLKQQRVQREITLALRTGLRDARAEF--SFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSVDER  103 (287)
Q Consensus        26 ~~v~elv~sl~~qR~yRevtlaLR~gLRDA~AeF--SFlR~rglr~ll~fl~s~a~sd~~i~LF~~sQs~~~lQ~~~~~~  103 (287)
                      ....-.++.+.....-.++-..|+..||-....|  .|+-..|+..|++.|.........-                   
T Consensus        66 ~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~-------------------  126 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKS-------------------  126 (187)
T ss_dssp             HHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTC-------------------
T ss_pred             hhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhc-------------------
Confidence            4555566667665555577777888888877777  8999999999999998844321110                   


Q ss_pred             cccccccccCCCccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHH
Q 023132          104 VTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSL  179 (287)
Q Consensus       104 V~~l~hi~g~ep~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~l  179 (287)
                                       ..........+|-|--++=.+.....+.....++..+...|.+..+-....++|.|.++
T Consensus       127 -----------------~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l  185 (187)
T PF06371_consen  127 -----------------EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL  185 (187)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred             -----------------chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence                             11222223345555433333344556666666777777777666666666677766654

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.91  E-value=5.1  Score=32.87  Aligned_cols=96  Identities=14%  Similarity=0.162  Sum_probs=69.8

Q ss_pred             hhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhccHHHHHHHHhhc-ccccchhhhHHHHHHHHhh
Q 023132          148 AHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACNGIEEVAELIRDK-QVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       148 a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~-Nq~dFE~~~Gl~~Va~llK~~-qvd~~vRlKC~EFLl~yl~  225 (287)
                      .+-..|++.+..-|..+.+-+|.-.|..|=+++--+.. =...|-.-.-++++.++++++ +++.+||.||.|++.-+--
T Consensus        33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            56677888888888888888998888888888877755 445555556677888899887 9999999999999877654


Q ss_pred             hccC--CCCCCcccHHHHHH
Q 023132          226 HVNG--RQLSPMATIHEDIR  243 (287)
Q Consensus       226 ~~~~--~~~~~~a~~~ed~~  243 (287)
                      ....  .+.|.+..++..+|
T Consensus       113 ~f~~~~~~~~~~~~~y~~lk  132 (133)
T cd03561         113 SFGGHSEDLPGIEDAYKLLK  132 (133)
T ss_pred             HhcCCCccchHHHHHHHHHh
Confidence            4333  22444444444443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 65/371 (17%), Positives = 110/371 (29%), Gaps = 116/371 (31%)

Query: 2   YLKKPLWSEGVEKQMESETETAAATAVGELANS---LKQQRVQR-EITLALRTGLRDARA 57
           +L  P+ +E  +  M +            L N      +  V R +  L LR  L + R 
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 58  EFSFLRVRGL----RSLLKILRSVAESDSTIHFF-----------CQS-QSVPE-LQD-- 98
               + + G+    ++ + +   V  S                  C S ++V E LQ   
Sbjct: 150 A-KNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 99  -SVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAH-KHKAI-- 154
             +D   TS     +   +R+ S   +    L  +  E  CLL     +L + ++     
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLL-----VLLNVQNAKAWN 260

Query: 155 ------KILM--------NILS--TRGALEQGACLDALT--------SLMLDSSANQLDF 190
                 KIL+        + LS  T   +        LT           LD     L  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 191 EACNG----IEEVAELIRD--------KQVD-ENLRLRCGEFLLLLIGHVNGRQLSPMAT 237
           E        +  +AE IRD        K V+ + L       L           L P   
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---------NVLEP--- 368

Query: 238 IHEDIRRL---LG---------EKSASLIWAASQFGSTLNPEERLMALHIQARRVLE--- 282
              + R++   L              SLIW           +  ++   +    ++E   
Sbjct: 369 --AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-----DVMVVVNKLHKYSLVEKQP 421

Query: 283 -----SL-DLY 287
                S+  +Y
Sbjct: 422 KESTISIPSIY 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.45
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	96.36
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.34
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	95.99
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	95.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	95.87
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	95.6
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.9
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	94.87
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	94.81
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	94.13
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	93.95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	93.77
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	93.44
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	93.32
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	92.41
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	92.09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	91.71
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	91.59
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	91.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	89.2
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	87.8
3nmz_A	458	APC variant protein; protein-protein complex, arma	86.83
3grl_A	651	General vesicular transport factor P115; vesicle t	85.81
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	85.79
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	85.09
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	84.9
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	83.52
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	83.31
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	82.2
3grl_A	651	General vesicular transport factor P115; vesicle t	80.97

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.13  E-value=0.0087  Score=47.13  Aligned_cols=108  Identities=13%  Similarity=0.100  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  203 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~ll  203 (287)
                      +.-...|++.|--.|--.+..+....+..+++.++++|....+..+..++-+|-.+...++.+...+.+.+++..+.+++
T Consensus       142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll  221 (252)
T 4hxt_A          142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL  221 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence            44456688888888877777777777889999999999988888999999999999988999999999999999999999


Q ss_pred             hhcccccchhhhHHHHHHHHhhhccCCCCC
Q 023132          204 RDKQVDENLRLRCGEFLLLLIGHVNGRQLS  233 (287)
Q Consensus       204 K~~qvd~~vRlKC~EFLl~yl~~~~~~~~~  233 (287)
                      ++.  +.++|..+...|.-+..+..+...+
T Consensus       222 ~~~--~~~v~~~a~~~L~~l~~~~~~~~~~  249 (252)
T 4hxt_A          222 TST--DSEVQKEAQRALENIKSGGWLEHHH  249 (252)
T ss_dssp             GCS--CHHHHHHHHHHHHHHHHTCBCCC--
T ss_pred             CCC--cHHHHHHHHHHHHHHHcCCCccccc
Confidence            864  6789999999888887766655433

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.45  E-value=0.0075  Score=47.17  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             ChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 023132          123 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  202 (287)
Q Consensus       123 TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~l  202 (287)
                      ...-...|+.+|.-.|--.+..+.......+++.++++|....+-.|..++-+|-.+.-+++.+...+.+..+++.+.++
T Consensus       109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l  188 (210)
T 4db6_A          109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL  188 (210)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHH
Confidence            34445568888888887777777777788899999999998888889999999999999999999999999999999999


Q ss_pred             HhhcccccchhhhHHHHHHHH
Q 023132          203 IRDKQVDENLRLRCGEFLLLL  223 (287)
Q Consensus       203 lK~~qvd~~vRlKC~EFLl~y  223 (287)
                      +++  -++++|-++.+.|--+
T Consensus       189 l~~--~~~~v~~~a~~aL~~l  207 (210)
T 4db6_A          189 QSH--ENEKIQKEAQEALEKL  207 (210)
T ss_dssp             GGC--SCHHHHHHHHHHHHHH
T ss_pred             HhC--CCHHHHHHHHHHHHHH
Confidence            985  4778999999887654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=96.36  E-value=0.0067  Score=48.64  Aligned_cols=101  Identities=14%  Similarity=0.082  Sum_probs=83.1

Q ss_pred             CChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHH
Q 023132          122 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAE  201 (287)
Q Consensus       122 ~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~  201 (287)
                      +.+.-...|+..|--.|--.........+..+++.++++|....+-.+..++.+|-.+..+++.+...+-+.+++..+.+
T Consensus       108 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  187 (252)
T 4db8_A          108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ  187 (252)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH
Confidence            34445566788887777665555467778889999999998887888999999998888888899889999999999999


Q ss_pred             HHhhcccccchhhhHHHHHHHHh
Q 023132          202 LIRDKQVDENLRLRCGEFLLLLI  224 (287)
Q Consensus       202 llK~~qvd~~vRlKC~EFLl~yl  224 (287)
                      ++++.  ++++|..++..|.-+.
T Consensus       188 ll~~~--~~~v~~~a~~~L~~l~  208 (252)
T 4db8_A          188 LLSSP--NEQILQEALWALSNIA  208 (252)
T ss_dssp             GGGCS--SHHHHHHHHHHHHHHT
T ss_pred             HHCCC--CHHHHHHHHHHHHHHh
Confidence            99976  8899999988887665

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.34  E-value=0.019  Score=45.23  Aligned_cols=99  Identities=13%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  203 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~ll  203 (287)
                      ......|++.|.-.+--++..+....+..+++.++++|....+-.+..++.+|-.+-.+++.+...+-+.+|+..+.+++
T Consensus        16 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll   95 (252)
T 4hxt_A           16 SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL   95 (252)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence            55566788888888888887888888889999999999998888899999999999999999999999999999999999


Q ss_pred             hhcccccchhhhHHHHHHHHh
Q 023132          204 RDKQVDENLRLRCGEFLLLLI  224 (287)
Q Consensus       204 K~~qvd~~vRlKC~EFLl~yl  224 (287)
                      ++  -++++|..|+.-|.-+.
T Consensus        96 ~~--~~~~v~~~a~~~L~~l~  114 (252)
T 4hxt_A           96 TS--TDSEVQKEAARALANIA  114 (252)
T ss_dssp             TC--SSHHHHHHHHHHHHHHT
T ss_pred             cC--CCHHHHHHHHHHHHHHH
Confidence            96  46889988888777766

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.26  E-value=0.014  Score=45.59  Aligned_cols=100  Identities=14%  Similarity=0.081  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  203 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~ll  203 (287)
                      +.-...|++.|--.|--.+..+....+..++..++++|....+-.+..++-+|-.+..+++.+...+-+..++..+.+++
T Consensus        68 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  147 (210)
T 4db6_A           68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL  147 (210)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH
Confidence            34456688888888887888888888899999999999988888899999999988888888888899999999999999


Q ss_pred             hhcccccchhhhHHHHHHHHhh
Q 023132          204 RDKQVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       204 K~~qvd~~vRlKC~EFLl~yl~  225 (287)
                      ++.  +.++|..++..|.-+..
T Consensus       148 ~~~--~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A          148 SSP--NEQILQEALWALSNIAS  167 (210)
T ss_dssp             TCS--CHHHHHHHHHHHHHHHT
T ss_pred             cCC--CHHHHHHHHHHHHHHHc
Confidence            975  78899999988877654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=95.99  E-value=0.18  Score=40.27  Aligned_cols=100  Identities=14%  Similarity=0.081  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  203 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~ll  203 (287)
                      +.-...|++.|.-++--++..+....+..++..++++|....+..+..++.+|-.+-.+++.....+-+.+|+..+.+++
T Consensus        68 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL  147 (252)
T 4db8_A           68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL  147 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH
Confidence            44455688888888887888888888889999999999998788889999888777666555548888999999999999


Q ss_pred             hhcccccchhhhHHHHHHHHhh
Q 023132          204 RDKQVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       204 K~~qvd~~vRlKC~EFLl~yl~  225 (287)
                      ++.  +.++|..++..|.-+..
T Consensus       148 ~~~--~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A          148 SSP--NEQILQEALWALSNIAS  167 (252)
T ss_dssp             GCS--CHHHHHHHHHHHHHHTT
T ss_pred             hCC--CHHHHHHHHHHHHHHHc
Confidence            875  77899888877766654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=95.89  E-value=0.052  Score=49.55  Aligned_cols=102  Identities=21%  Similarity=0.280  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  203 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~ll  203 (287)
                      +..-..|...|.-.|.-.++.+....+..++..|+++|....+-.|....-+|--+-.++++|...+-+..|+...+++|
T Consensus        16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL   95 (457)
T 1xm9_A           16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL   95 (457)
T ss_dssp             THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence            34455688888888877778887888999999999999987778899999999999999999999999999999999999


Q ss_pred             hhcccccchhhhHHHHHHHHhhh
Q 023132          204 RDKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       204 K~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      ++.+ +.+++-.++.-|.-+..+
T Consensus        96 ~~~~-~~~~~~~a~~aL~nLa~~  117 (457)
T 1xm9_A           96 RRTG-NAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             TTCC-CHHHHHHHHHHHHHHHTS
T ss_pred             hhCC-CHHHHHHHHHHHHHHhcC
Confidence            8544 668888888777777665

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=95.87  E-value=0.089  Score=46.73  Aligned_cols=100  Identities=15%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhc-CcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-GALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  202 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-g~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~l  202 (287)
                      ..=-..|.++|--++=..+.|+..+-+..|+..|+++|... .+-.+..++-||-++.-+.++++..|.+.+|+..++++
T Consensus        96 ~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~l  175 (296)
T 1xqr_A           96 AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA  175 (296)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHH
Confidence            33345688888877778899999999999999999999864 45678899999999888899999999999999999999


Q ss_pred             HhhcccccchhhhHHHHHHHHhh
Q 023132          203 IRDKQVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       203 lK~~qvd~~vRlKC~EFLl~yl~  225 (287)
                      |++.  +..+|-+.+-.|..+..
T Consensus       176 L~~~--d~~v~~~A~~aLs~L~~  196 (296)
T 1xqr_A          176 MQQQ--VQKLKVKSAFLLQNLLV  196 (296)
T ss_dssp             HHSS--CHHHHHHHHHHHHHHHH
T ss_pred             HcCC--CHHHHHHHHHHHHHHHh
Confidence            9874  78888887755544433

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=95.60  E-value=0.29  Score=43.08  Aligned_cols=100  Identities=16%  Similarity=0.103  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcch-hhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE-QGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  202 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~le-q~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~l  202 (287)
                      ..-...+.+.|.-.+.-++.++....+..+++.++++|....... +.++.-+ +.-|-.++.|...+-+.+++..+.++
T Consensus       157 ~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~g~~~~L~~l  235 (529)
T 1jdh_A          157 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV-LKVLSVCSSNKPAIVEAGGMQALGLH  235 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH-HHHHTTSTTHHHHHHHTTHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHH-HHHHhcCcccHHHHHHCCCHHHHHHH
Confidence            333455566666666667888888888899999999998754332 2334433 44556789999999999999999999


Q ss_pred             HhhcccccchhhhHHHHHHHHhhh
Q 023132          203 IRDKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       203 lK~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      +++.  +.+++..|+..|.-+..+
T Consensus       236 l~~~--~~~~~~~a~~~L~~l~~~  257 (529)
T 1jdh_A          236 LTDP--SQRLVQNCLWTLRNLSDA  257 (529)
T ss_dssp             TTSS--CHHHHHHHHHHHHHHHTT
T ss_pred             HhCC--ChHHHHHHHHHHHHHhcC
Confidence            9876  788999998887776654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=94.90  E-value=0.041  Score=50.22  Aligned_cols=109  Identities=9%  Similarity=0.064  Sum_probs=83.8

Q ss_pred             ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcc------hhhhHHHHHHHHHhCCChhhhh
Q 023132          116 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGAL------EQGACLDALTSLMLDSSANQLD  189 (287)
Q Consensus       116 ~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~l------eq~AcLDtLl~llvDSs~Nq~d  189 (287)
                      +++-..+++.=..-|...|.-++- +++.+....+ .++.-|+++|....+.      .+.+++++|-.++-.++.+.+.
T Consensus       337 v~LL~~~~~~v~~~A~~aL~nls~-~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~  414 (457)
T 1xm9_A          337 ARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ  414 (457)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHH
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHhc-CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            566655555444446666665554 6777777766 5999999999875442      5579999999999999999999


Q ss_pred             hhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhc
Q 023132          190 FEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHV  227 (287)
Q Consensus       190 FE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~  227 (287)
                      |+++.|++++.++++.. .+++++-|....|.-|..|.
T Consensus       415 i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          415 YFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSST
T ss_pred             HHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcch
Confidence            99999999999999965 46788888888887766553

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=94.87  E-value=0.16  Score=46.05  Aligned_cols=102  Identities=16%  Similarity=0.070  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  203 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~ll  203 (287)
                      +.-...|+++|.-.+--.+.++.......++..|+++|....+-.+..++.+|-.+--|++.+...+-+.+++..+.+++
T Consensus       145 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll  224 (530)
T 1wa5_B          145 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF  224 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh
Confidence            33445577888777776777888887888999999999988888899999999999999999988888899999999999


Q ss_pred             hhcccccchhhhHHHHHHHHhhhc
Q 023132          204 RDKQVDENLRLRCGEFLLLLIGHV  227 (287)
Q Consensus       204 K~~qvd~~vRlKC~EFLl~yl~~~  227 (287)
                      ++  .+.++|..++..|.-+..+.
T Consensus       225 ~~--~~~~v~~~a~~~L~~L~~~~  246 (530)
T 1wa5_B          225 NS--NKPSLIRTATWTLSNLCRGK  246 (530)
T ss_dssp             GS--CCHHHHHHHHHHHHHHHCCS
T ss_pred             cc--CCHHHHHHHHHHHHHHhCCC
Confidence            98  67889988888887766543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=94.81  E-value=0.69  Score=39.66  Aligned_cols=102  Identities=17%  Similarity=0.030  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 023132          125 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  204 (287)
Q Consensus       125 sEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK  204 (287)
                      .--..|+++|...+--.++.+....+..++..++.+|....+-.+..++.+|-.+.-|++.+...+-+.+++..+.++++
T Consensus        80 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~  159 (450)
T 2jdq_A           80 TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS  159 (450)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence            33445777777776655555555566789999999999877788899999999999999888888888899999999998


Q ss_pred             hcccccchhhhHHHHHHHHhhhc
Q 023132          205 DKQVDENLRLRCGEFLLLLIGHV  227 (287)
Q Consensus       205 ~~qvd~~vRlKC~EFLl~yl~~~  227 (287)
                      + ..+.++|..++..|.-+..+.
T Consensus       160 ~-~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          160 K-QNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             S-CCCHHHHHHHHHHHHHHHCCS
T ss_pred             C-CCCHHHHHHHHHHHHHHhCCC
Confidence            4 346789999998887776543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=94.13  E-value=1.3  Score=39.87  Aligned_cols=109  Identities=8%  Similarity=0.063  Sum_probs=86.9

Q ss_pred             ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhc-CcchhhhHHHHHHHHHhCCChhhhhhhhhc
Q 023132          116 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-GALEQGACLDALTSLMLDSSANQLDFEACN  194 (287)
Q Consensus       116 ~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-g~leq~AcLDtLl~llvDSs~Nq~dFE~~~  194 (287)
                      +++-..+.+.-..-|+++|--+|--.+..+...-...++..|+++|... .+..+..+.-+|-.+.-.++.+...+-+.+
T Consensus       292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~  371 (528)
T 4b8j_A          292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG  371 (528)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence            3334444556667799999888877777777777889999999999987 777888888887777777777777777889


Q ss_pred             cHHHHHHHHhhcccccchhhhHHHHHHHHhhh
Q 023132          195 GIEEVAELIRDKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       195 Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      ++..+.+++++.  +.++|..++..|.-+..+
T Consensus       372 ~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          372 IIGPLVNLLQTA--EFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             CHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence            999999999876  789999998888777655

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=93.95  E-value=0.23  Score=44.66  Aligned_cols=102  Identities=13%  Similarity=0.005  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  203 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~ll  203 (287)
                      +.--..|+..|.-.+--++..+....+..++..|+++|....+-.+..++-+|-.+--|++.+...+-+.+++..+..++
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL  211 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL  211 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence            44445688888888877788888888899999999999988788899999999999999999999999999999999999


Q ss_pred             hhcccccchhhhHHHHHHHHhhh
Q 023132          204 RDKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       204 K~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      ++. .+.+++-.++..|.-+..+
T Consensus       212 ~~~-~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          212 NEH-TKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             CTT-CCHHHHHHHHHHHHHHHCS
T ss_pred             hcC-CCHHHHHHHHHHHHHHHcC
Confidence            643 4778888888877766554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=93.77  E-value=0.2  Score=47.00  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=80.2

Q ss_pred             ccCCCChHHHH-HHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 023132          118 VTSPSTDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  196 (287)
Q Consensus       118 itsp~TdsEia-LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl  196 (287)
                      +++..++.+|. .+++.|--++ .++..+....+..+++.|+++|....+-.|.+++-+|--+. ..+++...|++..|+
T Consensus       423 ~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g~l  500 (644)
T 2z6h_A          423 FVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGAT  500 (644)
T ss_dssp             -CCSSCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCH
T ss_pred             hcccccHHHHHHHHHHHHHHHh-cCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCh
Confidence            34455777875 4667776555 46677888888899999999998877778888887766654 558899999999999


Q ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHh
Q 023132          197 EEVAELIRDKQVDENLRLRCGEFLLLLI  224 (287)
Q Consensus       197 ~~Va~llK~~qvd~~vRlKC~EFLl~yl  224 (287)
                      +.+.+++++.  +++||..|+.-|.-+.
T Consensus       501 ~~L~~ll~~~--~~~vr~~A~~aL~~l~  526 (644)
T 2z6h_A          501 APLTELLHSR--NEGVATYAAAVLFRMS  526 (644)
T ss_dssp             HHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence            9999999865  7789988888776553

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=93.44  E-value=0.15  Score=44.83  Aligned_cols=96  Identities=16%  Similarity=0.196  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  203 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~ll  203 (287)
                      +.-...|++.|.-+|.-++..+....+..++..++++|....+-.+..+.++|-.+-.+++++...+-+.+|++.+.+++
T Consensus       115 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll  194 (529)
T 1jdh_A          115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM  194 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            44456789999888888888888888899999999999886666778888888888888999999999999999999999


Q ss_pred             hhcccccchhhhHHHHH
Q 023132          204 RDKQVDENLRLRCGEFL  220 (287)
Q Consensus       204 K~~qvd~~vRlKC~EFL  220 (287)
                      ++. .++.++..++..|
T Consensus       195 ~~~-~~~~~~~~a~~~L  210 (529)
T 1jdh_A          195 RTY-TYEKLLWTTSRVL  210 (529)
T ss_dssp             HHC-CCHHHHHHHHHHH
T ss_pred             HhC-ChHHHHHHHHHHH
Confidence            975 3444554444443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=93.32  E-value=0.36  Score=42.85  Aligned_cols=102  Identities=11%  Similarity=0.082  Sum_probs=83.3

Q ss_pred             ChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 023132          123 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  202 (287)
Q Consensus       123 TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~l  202 (287)
                      .+.-..-|+..|--.|--+++.....-...++..|+++|....+-.|....=+|-.+.-.++++...|-+.+++..++++
T Consensus       138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L  217 (296)
T 1xqr_A          138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL  217 (296)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH
Confidence            34455668888887777778877666677899999999998877788777777777777788889999999999999999


Q ss_pred             HhhcccccchhhhHHHHHHHHhhh
Q 023132          203 IRDKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       203 lK~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      |+..  +.++|-+++.-|.-++..
T Consensus       218 L~~~--d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          218 VRTE--HSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HTSC--CSTHHHHHHHHHHHHHTT
T ss_pred             HcCC--ChhHHHHHHHHHHHHHhC
Confidence            9876  778999999988766654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=92.41  E-value=0.38  Score=47.26  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=83.1

Q ss_pred             ccCCCChHHHH-HHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 023132          118 VTSPSTDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  196 (287)
Q Consensus       118 itsp~TdsEia-LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl  196 (287)
                      +++..++.+|. .+++.|.-+| .++.++....+..+++.|+++|....+-.|.++.-+|-.+.- .+++...|++..|+
T Consensus       559 ~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i  636 (780)
T 2z6g_A          559 FVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGAT  636 (780)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCH
T ss_pred             hhcccChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCH
Confidence            44556667764 4677776666 467788888888999999999999888889998888776654 47889999999999


Q ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHhhh
Q 023132          197 EEVAELIRDKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       197 ~~Va~llK~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      +.+.+++++.  +++||-.|..-|.-+..+
T Consensus       637 ~~L~~Ll~~~--~~~Vr~~A~~aL~~l~~~  664 (780)
T 2z6g_A          637 APLTELLHSR--NEGVATYAAAVLFRMSED  664 (780)
T ss_dssp             HHHHHGGGCS--CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHHcC
Confidence            9999999864  688999888877665543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=92.09  E-value=0.49  Score=41.20  Aligned_cols=103  Identities=17%  Similarity=0.298  Sum_probs=82.1

Q ss_pred             ccCCCChHH-HHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 023132          118 VTSPSTDAE-VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  196 (287)
Q Consensus       118 itsp~TdsE-iaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl  196 (287)
                      +.+|..+.+ ...|...|+-.|.-+++.+....+..+|..|+++|....+-.|..-.-+|.-+=.+++.|....-+..||
T Consensus        17 L~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI   96 (233)
T 3tt9_A           17 LEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGV   96 (233)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             hCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCH
Confidence            455554323 3457778888888888999999999999999999998878889988999999989999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhHHHHHH
Q 023132          197 EEVAELIRDKQVDENLRLRCGEFLL  221 (287)
Q Consensus       197 ~~Va~llK~~qvd~~vRlKC~EFLl  221 (287)
                      ..++++|+..+ +.+++-.++--|+
T Consensus        97 ~~Lv~lL~~~~-~~~~~e~a~~aL~  120 (233)
T 3tt9_A           97 PRLLQVLKQTR-DLETKKQITGLLW  120 (233)
T ss_dssp             HHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHccCC-CHHHHHHHHHHHH
Confidence            99999999743 4455544443333

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=91.71  E-value=0.47  Score=44.54  Aligned_cols=99  Identities=15%  Similarity=0.189  Sum_probs=80.6

Q ss_pred             ChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 023132          123 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  202 (287)
Q Consensus       123 TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~l  202 (287)
                      .+.-...|+..|.-+|-....++....+..++..|+++|....+-.+.+++++|-.+-..+++|...+-+..|+..+.++
T Consensus       111 ~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l  190 (644)
T 2z6h_A          111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI  190 (644)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH
Confidence            45556678888888888888888888888999999999998777778888888888888899999999999999999999


Q ss_pred             HhhcccccchhhhHHHHHHH
Q 023132          203 IRDKQVDENLRLRCGEFLLL  222 (287)
Q Consensus       203 lK~~qvd~~vRlKC~EFLl~  222 (287)
                      +++.. ++.++..|+..|.-
T Consensus       191 L~~~~-~~~~~~~a~~~L~n  209 (644)
T 2z6h_A          191 MRTYT-YEKLLWTTSRVLKV  209 (644)
T ss_dssp             HTTCC-CHHHHHHHHHHHHH
T ss_pred             HHcCC-hHHHHHHHHHHHHH
Confidence            98763 45566555554433

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=91.59  E-value=0.91  Score=38.90  Aligned_cols=103  Identities=13%  Similarity=0.018  Sum_probs=78.0

Q ss_pred             CChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhC-CChhhhhhhhhccHHHHH
Q 023132          122 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLD-SSANQLDFEACNGIEEVA  200 (287)
Q Consensus       122 ~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvD-Ss~Nq~dFE~~~Gl~~Va  200 (287)
                      +...-..-|++.|..++--++..........++..++++|....+-.|.++.-+|-.+..+ ++++...+-+.+++..+.
T Consensus       288 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~  367 (450)
T 2jdq_A          288 PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLC  367 (450)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH
Confidence            3344444577777766655555555555568899999999988777888888888888777 556666677788999999


Q ss_pred             HHHhhcccccchhhhHHHHHHHHhhh
Q 023132          201 ELIRDKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       201 ~llK~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      +++++.  +.++|..|.+.|.-++..
T Consensus       368 ~ll~~~--~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          368 DLLTVM--DSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HGGGSS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCC--CHHHHHHHHHHHHHHHHh
Confidence            999975  788999999998776653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=91.00  E-value=5.2  Score=36.12  Aligned_cols=102  Identities=9%  Similarity=-0.018  Sum_probs=78.3

Q ss_pred             ChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 023132          123 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  202 (287)
Q Consensus       123 TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~l  202 (287)
                      .+.-..-|+++|--+|--++..+...-...++..++++|....+..+.+++-+|-.+.-.++.+...+-+.+++..+.++
T Consensus       312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  391 (530)
T 1wa5_B          312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL  391 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            34444567888877776666666666667899999999988777788888888877776677776777778999999999


Q ss_pred             HhhcccccchhhhHHHHHHHHhhh
Q 023132          203 IRDKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       203 lK~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      +++.  +.++|..++.-|--+..+
T Consensus       392 L~~~--~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          392 LEVA--EYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHS--CHHHHHHHHHHHHHHHHH
T ss_pred             HhcC--CHHHHHHHHHHHHHHHhc
Confidence            9864  678998888887766654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=89.20  E-value=0.92  Score=44.54  Aligned_cols=91  Identities=13%  Similarity=0.187  Sum_probs=76.5

Q ss_pred             ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhcc
Q 023132          116 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNG  195 (287)
Q Consensus       116 ~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~G  195 (287)
                      +++-..+.+.-...|+..|--+|..+...+....+..++..++++|.....-.+..++++|-.+-.+++++...|-+..|
T Consensus       240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~  319 (780)
T 2z6g_A          240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  319 (780)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence            44444445566677999999999998999999988999999999998866667788888888777788999999999999


Q ss_pred             HHHHHHHHhhc
Q 023132          196 IEEVAELIRDK  206 (287)
Q Consensus       196 l~~Va~llK~~  206 (287)
                      ++.+++++|+.
T Consensus       320 i~~Lv~lL~~~  330 (780)
T 2z6g_A          320 PQALVNIMRTY  330 (780)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhcC
Confidence            99999999975

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=87.80  E-value=2.9  Score=38.43  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhc
Q 023132          116 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACN  194 (287)
Q Consensus       116 ~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~-Nq~dFE~~~  194 (287)
                      +++-+.+.+.-...|...|--++--.+..+.....+.++..++++|.....-.|..+.=+|--+....+. +...+-+..
T Consensus       322 ~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g  401 (510)
T 3ul1_B          322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG  401 (510)
T ss_dssp             C-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence            4444444555556678888888887888888888999999999999998888888888888888776554 446678899


Q ss_pred             cHHHHHHHHhhcccccchhhhHHHHHHHHh
Q 023132          195 GIEEVAELIRDKQVDENLRLRCGEFLLLLI  224 (287)
Q Consensus       195 Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl  224 (287)
                      ++....++|+..  |.+++..+.+.|.-++
T Consensus       402 ~i~~L~~LL~~~--d~~i~~~~L~aL~nil  429 (510)
T 3ul1_B          402 IIEPLMNLLSAK--DTKIIQVILDAISNIF  429 (510)
T ss_dssp             CHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            999999999864  7889999999886554

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=86.83  E-value=7.6  Score=36.70  Aligned_cols=179  Identities=13%  Similarity=0.127  Sum_probs=124.5

Q ss_pred             hhhhhHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhhcchhhHHHhchHHHHHHHhhhhccccchhhhh
Q 023132           23 AAATAVGELANSLKQ--------------QRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFC   88 (287)
Q Consensus        23 ~~~~~v~elv~sl~~--------------qR~yRevtlaLR~gLRDA~AeFSFlR~rglr~ll~fl~s~a~sd~~i~LF~   88 (287)
                      ..++++--||+-|..              ..+..|-+|+|..=...---++...|..|+=.+|+-++...  +-.+++.+
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~  144 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYC--ETCWEWQE  144 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhh--HHHHHHHH
Confidence            336788888888885              57888899999887766666788888888887888765532  22333332


Q ss_pred             ccCCchhhhhhhccccccccccccCCCccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhh-----
Q 023132           89 QSQSVPELQDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILST-----  163 (287)
Q Consensus        89 ~sQs~~~lQ~~~~~~V~~l~hi~g~ep~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~-----  163 (287)
                      +.=+..|   .++.+|        .|       +.+-++..|+..|-.+.- ++.++....+..+++.|+++|..     
T Consensus       145 ~~~~~~~---~~~~~~--------~~-------~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~  205 (458)
T 3nmz_A          145 AHEPGMD---QDKNPM--------PA-------PVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMY  205 (458)
T ss_dssp             TTSSSSC---CCSCC----------C-------CCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred             hhccccc---cccCCc--------cc-------hhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhccc
Confidence            2100000   000011        11       456678899999988744 69999999999999999999953     


Q ss_pred             ------cCcchhhhHHHHHHHHHhCCChhhhhhhhhcc-HHHHHHHHhhcccccchhhhHHHHHHHHh
Q 023132          164 ------RGALEQGACLDALTSLMLDSSANQLDFEACNG-IEEVAELIRDKQVDENLRLRCGEFLLLLI  224 (287)
Q Consensus       164 ------rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~G-l~~Va~llK~~qvd~~vRlKC~EFLl~yl  224 (287)
                            ..+..|....-+|--+-.+.+.|...+.+..| |..++++|+.  -+++++-.++--|.-+.
T Consensus       206 ~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s--~~~~v~~~A~~aL~nLs  271 (458)
T 3nmz_A          206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS--ESEDLQQVIASVLRNLS  271 (458)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC--CCHHHHHHHHHHHHHHh
Confidence                  11335777778888888888888888888889 9999999983  45677766665554443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=85.81  E-value=5.5  Score=40.44  Aligned_cols=142  Identities=13%  Similarity=0.157  Sum_probs=95.7

Q ss_pred             HHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCc----chhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhh
Q 023132          130 ALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGA----LEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRD  205 (287)
Q Consensus       130 ALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~----leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~  205 (287)
                      |+-+|.-.+=-++....+..--.|.+.+++|+...|.    ..+.-||-.+-.++=..++||.-|-|.+++.+++.+++-
T Consensus       186 allLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~  265 (651)
T 3grl_A          186 GVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEV  265 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCC
Confidence            7777777777788888888888999999999999776    678899999999999999999999999999999999974


Q ss_pred             cccccch------hhhHHHHHHHHhhhccCCCCCCccc--HHHHHHHHhchhhHHHHHHhhhhcCCCChHHhHHHHHHHH
Q 023132          206 KQVDENL------RLRCGEFLLLLIGHVNGRQLSPMAT--IHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQA  277 (287)
Q Consensus       206 ~qvd~~v------RlKC~EFLl~yl~~~~~~~~~~~a~--~~ed~~~llGe~~asliwaa~~fgstlD~e~r~~aL~~qA  277 (287)
                         +++.      |+++.-..+..+.-.-..++++-.+  -|..+.+   ......+... -|++.....-|..|+.--|
T Consensus       266 ---~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~---~g~l~~Ll~l-l~~~~~p~~i~~~Al~tla  338 (651)
T 3grl_A          266 ---GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ---CGLLQQLCTI-LMATGVPADILTETINTVS  338 (651)
T ss_dssp             ---CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH---TTHHHHHHHH-HTCSSCCHHHHHHHHHHHH
T ss_pred             ---CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH---CCCHHHHHHH-HccCCCCHHHHHHHHHHHH
Confidence               3344      6777555444444333333331111  2222222   1111122221 3446666677777776555


Q ss_pred             H
Q 023132          278 R  278 (287)
Q Consensus       278 ~  278 (287)
                      .
T Consensus       339 ~  339 (651)
T 3grl_A          339 E  339 (651)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=85.79  E-value=3  Score=38.33  Aligned_cols=107  Identities=14%  Similarity=0.102  Sum_probs=83.0

Q ss_pred             ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhc
Q 023132          116 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACN  194 (287)
Q Consensus       116 ~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~-Nq~dFE~~~  194 (287)
                      +++-+.+.+.-...|..+|--+|--.+......-.+.++..++++|.....-.|..+.=+|-.+...++. +...+-+..
T Consensus       341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g  420 (529)
T 3tpo_A          341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG  420 (529)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc
Confidence            3333334444445677888888877888888888889999999999998888888888888888776544 456678899


Q ss_pred             cHHHHHHHHhhcccccchhhhHHHHHHHHh
Q 023132          195 GIEEVAELIRDKQVDENLRLRCGEFLLLLI  224 (287)
Q Consensus       195 Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl  224 (287)
                      +|....++|+..  |.+++..|.+.|.-++
T Consensus       421 ~i~~L~~LL~~~--d~~i~~~~L~aL~nil  448 (529)
T 3tpo_A          421 IIEPLMNLLSAK--DTKIIQVILDAISNIF  448 (529)
T ss_dssp             CHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            999999999754  7889988888876554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=85.09  E-value=1.5  Score=39.73  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=80.8

Q ss_pred             CChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhc-----------CcchhhhHHHHHHHHHhCCChhhhhh
Q 023132          122 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-----------GALEQGACLDALTSLMLDSSANQLDF  190 (287)
Q Consensus       122 ~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-----------g~leq~AcLDtLl~llvDSs~Nq~dF  190 (287)
                      |++-++..|++.|.-.+- +++++.+..+..+++.|+++|...           .+-.|....-+|--+-.+++.|...+
T Consensus        44 ~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            567788899999998886 489999999999999999999631           13457778888888888888888888


Q ss_pred             hhhcc-HHHHHHHHhhcccccchhhhHHHHHHHHhh
Q 023132          191 EACNG-IEEVAELIRDKQVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       191 E~~~G-l~~Va~llK~~qvd~~vRlKC~EFLl~yl~  225 (287)
                      ....| |...+++|+.  -+++++-..+-.|.-+..
T Consensus       123 ~~~~GaIp~LV~LL~s--~~~~v~~~A~~aL~nLs~  156 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKS--ESEDLQQVIASVLRNLSW  156 (354)
T ss_dssp             HHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHT
T ss_pred             HHcCCcHHHHHHHHCC--CCHHHHHHHHHHHHHHhc
Confidence            88889 9999999984  456777776666655543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=84.90  E-value=2  Score=39.41  Aligned_cols=81  Identities=15%  Similarity=0.030  Sum_probs=70.7

Q ss_pred             HHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcc
Q 023132          128 ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ  207 (287)
Q Consensus       128 aLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~q  207 (287)
                      ..|.++|--++--.+..+...-...||..|+.+|....+-.|..|+-+|-.|-.|++.+...+-++.|+..+..+++...
T Consensus       138 ~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~  217 (529)
T 3tpo_A          138 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPD  217 (529)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccc
Confidence            34778888877777777778888899999999998888889999999999999999999999999999999999998654


Q ss_pred             c
Q 023132          208 V  208 (287)
Q Consensus       208 v  208 (287)
                      .
T Consensus       218 ~  218 (529)
T 3tpo_A          218 L  218 (529)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=83.52  E-value=2.7  Score=41.37  Aligned_cols=89  Identities=21%  Similarity=0.344  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHh-CCChhhhhhhhhccHHHHHHH
Q 023132          124 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLML-DSSANQLDFEACNGIEEVAEL  202 (287)
Q Consensus       124 dsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llv-DSs~Nq~dFE~~~Gl~~Va~l  202 (287)
                      +.....|...|.-.|.-+.+.|....+..+|..|+++|....+-.|....-+|--|-. |++.|....-++.||..++++
T Consensus        62 ~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~L  141 (584)
T 3l6x_A           62 DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL  141 (584)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHH
Confidence            3334457788888898899999999999999999999998888889999999999988 589999999999999999999


Q ss_pred             Hhhcccccchh
Q 023132          203 IRDKQVDENLR  213 (287)
Q Consensus       203 lK~~qvd~~vR  213 (287)
                      |+..+ +.+++
T Consensus       142 L~s~~-~~~~~  151 (584)
T 3l6x_A          142 LRKAR-DMDLT  151 (584)
T ss_dssp             HHHCC-SHHHH
T ss_pred             HcCCC-CHHHH
Confidence            99743 33444

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=83.31  E-value=3.4  Score=37.96  Aligned_cols=79  Identities=16%  Similarity=0.053  Sum_probs=67.7

Q ss_pred             HHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcc
Q 023132          129 LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ  207 (287)
Q Consensus       129 LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~q  207 (287)
                      .|.++|--.+--.+..+...-+..||..|+.+|....+-.|..|+-+|--+-.|++.+...+-+..|+..+..+++...
T Consensus       120 ~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~  198 (510)
T 3ul1_B          120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD  198 (510)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhcc
Confidence            4666666665556667777778899999999999888889999999999999999999999999999999999998654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=82.20  E-value=3.1  Score=37.67  Aligned_cols=97  Identities=11%  Similarity=0.143  Sum_probs=76.4

Q ss_pred             HHHHHHHhhhcc---cCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 023132          128 ALALRVLEGCCL---LHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  204 (287)
Q Consensus       128 aLALrVLeGccL---Lh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK  204 (287)
                      .-|..+|.-++-   -++..+....++.++..|+++|.....-.|..+.-+|--+-..++.|...+-+..|+....++++
T Consensus       236 ~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~  315 (354)
T 3nmw_A          236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH  315 (354)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh
Confidence            345555555554   47788888889999999999999877778888888887776688999999999999999999998


Q ss_pred             hcccccchhhhHHHHHHHHhhh
Q 023132          205 DKQVDENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       205 ~~qvd~~vRlKC~EFLl~yl~~  226 (287)
                      ..  ++++|..++.=|.-+..+
T Consensus       316 s~--~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          316 SK--HKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             CS--SHHHHHHHHHHHHHHHTT
T ss_pred             CC--CHHHHHHHHHHHHHHHcC
Confidence            64  667887777666655543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=80.97  E-value=8.9  Score=38.93  Aligned_cols=192  Identities=16%  Similarity=0.194  Sum_probs=122.4

Q ss_pred             hhhhhHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhcchhhHHHhchHHHHHHHhhhhccc--------cchhhhhccC
Q 023132           23 AAATAVGELANSLKQQRV---QREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESD--------STIHFFCQSQ   91 (287)
Q Consensus        23 ~~~~~v~elv~sl~~qR~---yRevtlaLR~gLRDA~AeFSFlR~rglr~ll~fl~s~a~sd--------~~i~LF~~sQ   91 (287)
                      .++..+..|++-++---+   .|+--++||.=-|+.++++.   .+||+.|+..|+.-.+-+        .-..+|+...
T Consensus        18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            334445555544443322   36777888888888887765   789999999888743221        1224676442


Q ss_pred             Cchh------------hh-----hhhccccccccccccCCCccccCCCChHHHHH-HHHHHhhhcccCcc--hHHHhhhh
Q 023132           92 SVPE------------LQ-----DSVDERVTSLDHIFTVDPMRVTSPSTDAEVAL-ALRVLEGCCLLHRE--SAILAHKH  151 (287)
Q Consensus        92 s~~~------------lQ-----~~~~~~V~~l~hi~g~ep~kitsp~TdsEiaL-ALrVLeGccLLh~~--s~~~a~r~  151 (287)
                      .=++            ++     -.+.+.|..|=..+         .+.|-.+-+ +++.|+-.|...+.  -+......
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL---------~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p  165 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLL---------EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP  165 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHT---------TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHh---------cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc
Confidence            1110            00     00111111111111         123434433 77888877777666  34455566


Q ss_pred             HHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccc--cchhhhHHHHHHHHhhh
Q 023132          152 KAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVD--ENLRLRCGEFLLLLIGH  226 (287)
Q Consensus       152 ~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd--~~vRlKC~EFLl~yl~~  226 (287)
                      .++.-|+++|.......+-..+..|..+-=+++..|+-+.--+|.+.+-++++..|--  -.|=-.|...|.-++-+
T Consensus       166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~  242 (651)
T 3grl_A          166 MGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN  242 (651)
T ss_dssp             THHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence            7888888888888888888888888888889999999999889999999999998862  23445788877766655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.75
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.7
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	92.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	92.58
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	90.9
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	90.51
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	89.46

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0021  Score=50.12  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=86.1

Q ss_pred             HHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc
Q 023132          127 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  206 (287)
Q Consensus       127 iaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~  206 (287)
                      -..|.+.|.-.|.-+++.+....+..+|..|+++|....+-.|.+++-+|-.+..++++|+..+-+.+|+..+..+++..
T Consensus        19 ~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~   98 (457)
T d1xm9a1          19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT   98 (457)
T ss_dssp             HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhcc
Confidence            34578899999988888899999999999999999888888999999999999999999999999999999999999875


Q ss_pred             ccccchhhhHHHHHHHHhh
Q 023132          207 QVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       207 qvd~~vRlKC~EFLl~yl~  225 (287)
                      + +.++|..+.+.|.-+..
T Consensus        99 ~-~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          99 G-NAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             C-CHHHHHHHHHHHHHHHT
T ss_pred             C-cHHHHHHHHHHHHHHHh
Confidence            4 66788888887776654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0099  Score=47.39  Aligned_cols=99  Identities=11%  Similarity=0.064  Sum_probs=83.5

Q ss_pred             ChHHH-HHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHH
Q 023132          123 TDAEV-ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAE  201 (287)
Q Consensus       123 TdsEi-aLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~  201 (287)
                      +|.++ .-|+..|...|--+++.+....+..++++++++|.....-.|..++-+|..++..++.+...|.+.+|++.++.
T Consensus       114 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~  193 (264)
T d1xqra1         114 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA  193 (264)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHH
Confidence            34443 45788888888888888888889999999999999888888888888888888899999999999999999999


Q ss_pred             HHhhcccccchhhhHHHHHHHH
Q 023132          202 LIRDKQVDENLRLRCGEFLLLL  223 (287)
Q Consensus       202 llK~~qvd~~vRlKC~EFLl~y  223 (287)
                      ++++  .+.++|.+|.--|.-+
T Consensus       194 lL~~--~~~~~~~~a~~aL~~L  213 (264)
T d1xqra1         194 LVRT--EHSPFHEHVLGALCSL  213 (264)
T ss_dssp             HHTS--CCSTHHHHHHHHHHHH
T ss_pred             HHcC--CCHHHHHHHHHHHHHH
Confidence            9976  4788999888666543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0029  Score=50.64  Aligned_cols=99  Identities=16%  Similarity=0.183  Sum_probs=84.0

Q ss_pred             ChHH-HHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcC-cchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHH
Q 023132          123 TDAE-VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRG-ALEQGACLDALTSLMLDSSANQLDFEACNGIEEVA  200 (287)
Q Consensus       123 TdsE-iaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg-~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va  200 (287)
                      +|.+ -..|+.+|-=+|-..+.++....++.++..++++|.... +..+..++-+|-.+.-++++|+..|-+.+|+..+.
T Consensus        71 ~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~  150 (264)
T d1xqra1          71 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM  150 (264)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHH
Confidence            3444 466899998888888999999999999999999997654 45789999999999999999999999999999999


Q ss_pred             HHHhhcccccchhhhHHHHHHHH
Q 023132          201 ELIRDKQVDENLRLRCGEFLLLL  223 (287)
Q Consensus       201 ~llK~~qvd~~vRlKC~EFLl~y  223 (287)
                      ++++..  ++.++.+++--|.-+
T Consensus       151 ~lL~~~--~~~~~~~a~~~L~~l  171 (264)
T d1xqra1         151 RAMQQQ--VQKLKVKSAFLLQNL  171 (264)
T ss_dssp             HHHHSS--CHHHHHHHHHHHHHH
T ss_pred             HHHhcC--chHHHHHHHHHHHHH
Confidence            999864  778998887555433

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.015  Score=49.28  Aligned_cols=96  Identities=16%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             HHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc
Q 023132          127 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  206 (287)
Q Consensus       127 iaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~  206 (287)
                      -..|...|.-+| -|.+++....+..++..++.+|....+-.|..+.-+|-.+..|++.+++.|.+.+|++.+++++++.
T Consensus        77 ~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~  155 (529)
T d1jdha_          77 ARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT  155 (529)
T ss_dssp             HHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc
Confidence            344777777777 4888888888899999999999888888999999999999999999999999999999999999764


Q ss_pred             ccccchhhhHHHHHHHHhh
Q 023132          207 QVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       207 qvd~~vRlKC~EFLl~yl~  225 (287)
                        +.+++..++.-|..+..
T Consensus       156 --~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_         156 --NVKFLAITTDCLQILAY  172 (529)
T ss_dssp             --CHHHHHHHHHHHHHHHT
T ss_pred             --ChHHHHHHHHHHHHHhh
Confidence              56788888887766543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.013  Score=49.78  Aligned_cols=107  Identities=15%  Similarity=0.206  Sum_probs=88.5

Q ss_pred             ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhcc
Q 023132          116 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNG  195 (287)
Q Consensus       116 ~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~G  195 (287)
                      +++-+.+.+.-...|.+.|.-.|.-++.++.......+++.|+++|....+-.|..+..+|-.+..+++.+...+-+..|
T Consensus       107 i~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  186 (529)
T d1jdha_         107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  186 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhccc
Confidence            33333344556677899999999999999999999999999999998888888999999998888888999999999999


Q ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHH
Q 023132          196 IEEVAELIRDKQVDENLRLRCGEFLLLL  223 (287)
Q Consensus       196 l~~Va~llK~~qvd~~vRlKC~EFLl~y  223 (287)
                      +....++++... ++.++-.|.+.+-.+
T Consensus       187 ~~~L~~ll~~~~-~~~~~~~~~~~l~~l  213 (529)
T d1jdha_         187 PQALVNIMRTYT-YEKLLWTTSRVLKVL  213 (529)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHhhh-hHHHHHHHHHHHhhh
Confidence            999999998754 567887777766543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.89  E-value=0.46  Score=38.00  Aligned_cols=87  Identities=15%  Similarity=0.059  Sum_probs=73.0

Q ss_pred             ChHHHH-HHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHH
Q 023132          123 TDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAE  201 (287)
Q Consensus       123 TdsEia-LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~  201 (287)
                      .|.+|- .|++.|.-+|--.+..+...-...++..++.+|....+-.+..++-+|--+..|++.+...+-+.+|++....
T Consensus        69 ~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~  148 (434)
T d1q1sc_          69 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA  148 (434)
T ss_dssp             GGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHH
Confidence            345553 5888888887767777878888899999999998888888999999999999999999999999999999999


Q ss_pred             HHhhcccc
Q 023132          202 LIRDKQVD  209 (287)
Q Consensus       202 llK~~qvd  209 (287)
                      ++.....+
T Consensus       149 ~l~~~~~~  156 (434)
T d1q1sc_         149 LLAVPDLS  156 (434)
T ss_dssp             HTCSSCGG
T ss_pred             HHHhcccc
Confidence            99865544

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.58  E-value=0.28  Score=39.26  Aligned_cols=107  Identities=14%  Similarity=0.112  Sum_probs=84.3

Q ss_pred             ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhh-hhhhhc
Q 023132          116 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQL-DFEACN  194 (287)
Q Consensus       116 ~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~-dFE~~~  194 (287)
                      +++-+-+.+.-...|+..|-.+|-.++.+.....++.+++.++++|....+-.+..+.=++..+..+++..+. .+-+.+
T Consensus       278 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~  357 (434)
T d1q1sc_         278 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG  357 (434)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence            3444444444556788899999988899999999999999999999998888999999999888887765544 455778


Q ss_pred             cHHHHHHHHhhcccccchhhhHHHHHHHHh
Q 023132          195 GIEEVAELIRDKQVDENLRLRCGEFLLLLI  224 (287)
Q Consensus       195 Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl  224 (287)
                      +++.+.++++..  |.+++..+.+-|+-++
T Consensus       358 ~i~~L~~ll~~~--d~~~~~~~l~~l~~ll  385 (434)
T d1q1sc_         358 IIEPLMNLLSAK--DTKIIQVILDAISNIF  385 (434)
T ss_dssp             CHHHHHHHTTSS--CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            899999999754  7788888777766554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.90  E-value=0.43  Score=39.93  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=84.1

Q ss_pred             ccCCCChHHH-HHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 023132          118 VTSPSTDAEV-ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  196 (287)
Q Consensus       118 itsp~TdsEi-aLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl  196 (287)
                      +-..+.|.+| ..|+++|--+|...+..+.......++.+++.+|.....-.+..|+-+|--+.-|++.+...+-+++|+
T Consensus       127 ~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~  206 (503)
T d1wa5b_         127 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM  206 (503)
T ss_dssp             TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhccc
Confidence            3333445555 448999988888777778788888899999999998888889999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHhh
Q 023132          197 EEVAELIRDKQVDENLRLRCGEFLLLLIG  225 (287)
Q Consensus       197 ~~Va~llK~~qvd~~vRlKC~EFLl~yl~  225 (287)
                      ..+..++.+..  .+++..++-.|.-+..
T Consensus       207 ~~L~~ll~~~~--~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         207 EPILGLFNSNK--PSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHGGGSCC--HHHHHHHHHHHHHHHC
T ss_pred             ccchhhcccCC--HHHHHHHHHHHHHHhc
Confidence            99999997653  4566666655555543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.51  E-value=3  Score=34.52  Aligned_cols=139  Identities=10%  Similarity=0.000  Sum_probs=97.2

Q ss_pred             ChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 023132          123 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  202 (287)
Q Consensus       123 TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~l  202 (287)
                      .+.-...|+++|...+..+..-+..+-.+.+++.+..+|....+..+..++-++--+..-++.+...+-+.+++..+..+
T Consensus       301 ~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~  380 (503)
T d1wa5b_         301 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL  380 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHh
Confidence            34444568888888887666667778888899999999988777788888888877777677777788889999999999


Q ss_pred             HhhcccccchhhhHHHHHHHHhhhccCCCCCCcccHHHHHHHHhchhhHHHHHHhhhhcCCCChHHhHHHHH
Q 023132          203 IRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALH  274 (287)
Q Consensus       203 lK~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~~a~~~ed~~~llGe~~asliwaa~~fgstlD~e~r~~aL~  274 (287)
                      +...  +.++|-.|+.+|--+..+.....        +.+..+....+-..+....+   .-|++-...+|.
T Consensus       381 l~~~--~~~v~~~a~~~l~nl~~~~~~~~--------~~~~~l~~~~~l~~l~~~L~---~~d~~~~~~~L~  439 (503)
T d1wa5b_         381 LEVA--EYKTKKEACWAISNASSGGLQRP--------DIIRYLVSQGCIKPLCDLLE---IADNRIIEVTLD  439 (503)
T ss_dssp             HHHS--CHHHHHHHHHHHHHHHHHTTTCT--------HHHHHHHHTTCHHHHHHHTT---TCCHHHHHHHHH
T ss_pred             cccC--ChhHHHHHHHHHHHHHhcccccH--------HHHHHHHHCCcHHHHHHHhc---CCCHHHHHHHHH
Confidence            9765  45789889888887776654431        34444544444444443322   225555444443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.58  Score=35.89  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=67.7

Q ss_pred             ChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCc------chhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 023132          123 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGA------LEQGACLDALTSLMLDSSANQLDFEACNGI  196 (287)
Q Consensus       123 TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~------leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl  196 (287)
                      .+.-...+++.|-..+ .++..+....+ .+++-++++|.....      -.+.+++-+|--++.+++.|...+.+..|+
T Consensus       344 ~~~v~~~a~~~l~~La-~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i  421 (457)
T d1xm9a1         344 NSDVVRSGASLLSNMS-RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML  421 (457)
T ss_dssp             CHHHHHHHHHHHHHHH-TSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHH
T ss_pred             cHHHHHHHHHHHHHHh-hChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence            3444455667776655 45555555554 578888888865332      255778888888999999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhHHHHHHH
Q 023132          197 EEVAELIRDKQVDENLRLRCGEFLLL  222 (287)
Q Consensus       197 ~~Va~llK~~qvd~~vRlKC~EFLl~  222 (287)
                      +.+..+++..+-+ .++...++-|.-
T Consensus       422 ~~L~~l~~~~~~~-~~~~aA~~~L~~  446 (457)
T d1xm9a1         422 NNIINLCRSSASP-KAAEAARLLLSD  446 (457)
T ss_dssp             HHHHHHHHCTTCH-HHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCH-HHHHHHHHHHHH
Confidence            9999999987655 344444444443