Citrus Sinensis ID: 023196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSNNGEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF
Secondary Structure (PSIPRED)
ccccccccccccccHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHcccccHcccHccEEcccHHHHHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
metlypasymsnssnwflqessrstswtkeENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEedvsdieagrvpipgylsssftlelvsesdydanrKRTLVAKssdherkkgvpwteEEHKRFLMGLIKygkgdwrnisrnyvisktptqvASHAQKYFIRQLsggkdkrrpsihdittgnltnsvssdnhkpssfdqsnvipaqqkslgtpkvglewtdsnngevmasdstqsnmlmpsafefgshglklqgqnlyattayhgahvkprnpff
Flexible Loop (DISEMBL)
metlypasymsnssnwflQESSRSTSWTKEENKRFESALAiysestpdrWIKVAAMIPGKTVLDVIKQYKELEedvsdieagrvpipgyLSSSFTLELvsesdydanrkrtlvakssdherkkgvpwteeehKRFLMGLIKYGKGDWRNISRNYVISKtptqvashAQKYFIRQlsggkdkrrpsihdittgnltnsvssDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSNNGEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAyhgahvkprnpff
Low Complexity Region (SEG)
METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSNNGEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF
Disordered region (IsUnstruct)
*************************************ALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELV***************************W**EEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ*********************************************************************************FGSHGLKLQGQNLYATTAYHG**********
Disordered Region (DISOPRED)
**TLYP*************************NKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKE*****SDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKS**HERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY**************************************************************************************************************PRNPFF
Disordered Region (DISEMBL)
METLYPASYMSNSSNWFLQ*************KRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLV***************EEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHDITTGNLTNS***********DQSNVIPAQQKSLGTPKVGLEWTDSNNGEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF
Disordered Region (DISPRO)
**TLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYL*******************************KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS****************NL*****************************************************MLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSNNGEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q8S9H7	307	Transcription factor DIVA	N/A	no	0.933	0.869	0.553	3e-77
Q2V9B0	297	Transcription factor MYB1	N/A	no	0.279	0.269	0.637	2e-20
Q1A173	97	Protein RADIALIS-like 6 O	no	no	0.325	0.958	0.432	1e-13
Q869R9	734	Myb-like protein J OS=Dic	yes	no	0.227	0.088	0.514	6e-13
Q6NNN0	81	Protein RADIALIS-like 3 O	no	no	0.230	0.814	0.515	7e-13
Q58FS3	93	Transcription factor RADI	N/A	no	0.248	0.763	0.450	5e-12
F4JVB8	100	Protein RADIALIS-like 1 O	no	no	0.230	0.66	0.469	7e-12
Q9SIJ5	101	Protein RADIALIS-like 2 O	no	no	0.234	0.663	0.462	5e-11
Q1G3C4	77	Protein RADIALIS-like 4 O	no	no	0.220	0.818	0.460	1e-09
Q54HX6	977	Myb-like protein I OS=Dic	no	no	0.213	0.062	0.426	1e-08

>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1

 Score =  288 bits (737), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/280 (55%), Positives = 196/280 (70%), Gaps = 13/280 (4%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
           ME L P+S   +SS+WFL+ES  +T WT  ENK FE+ALA++ E+TP+RW +VA  +PGK
Sbjct: 1   MEILAPSS-YFSSSSWFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGK 59

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSS-FTLELVSESDYDANR-------KRTL 112
           TV DV++QYKELE+DVS IEAG VP+PGY +SS FTLE  S   +D  +       +++ 
Sbjct: 60  TVGDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQSYGTGGRKSS 119

Query: 113 VAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172
             + S+ ERKKGVPWTEEEHK FLMGL KYGKGDWRNISRN+VI++TPTQVASHAQKYFI
Sbjct: 120 SGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFI 179

Query: 173 RQLSGGKDKRRPSIHDITTGNLTN--SVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEW 230
           RQLSGGKDKRR SIHDITT NL++  + S DN KP S    ++   Q  S    K+  +W
Sbjct: 180 RQLSGGKDKRRASIHDITTVNLSDNQTPSPDNKKPPSSPDHSMAQQQTSSTSIHKLPFQW 239

Query: 231 TDSNNGEVM--ASDSTQSNMLMPSAFEFGSHGLKLQGQNL 268
             ++N  +M  AS     NM   + F   S+G K+QGQ +
Sbjct: 240 DQTSNETIMGFASSGHHGNMFQSNPFGMNSYGFKMQGQQM 279

Involved in the dorsovental asymmetry of flowers. Promotes ventral identity.
Antirrhinum majus (taxid: 4151)

>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 66/80 (82%)

Query: 116 SSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL 175
           +S  ERK+GVPWTEEEHK FL+GL K GKGDWR ISRN+V ++TPTQVASHAQKYF+R+ 
Sbjct: 86  NSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRS 145

Query: 176 SGGKDKRRPSIHDITTGNLT 195
           +  + +RR S+ DITT +++
Sbjct: 146 NLNRRRRRSSLFDITTDSVS 165

Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance.

Solanum tuberosum (taxid: 4113)

>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 4/97 (4%)

Query: 18  LQESSRST--SWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED 75
           +  +SRS+   WT  +NK FE ALA+Y + TPDRW  VA  + GKTV +V + Y  L ED
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 76  VSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTL 112
           + +IE GRVP+P Y   +F     S +D+D  + + L
Sbjct: 61  LINIETGRVPLPNY--KTFESNSRSINDFDTRKMKNL 95

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 51/68 (75%), Gaps = 3/68 (4%)

Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSI 186
           WT+EEH RFL G+  +GKG W+ I++ +V ++TPTQ+ SHAQKY++RQ    K+KR  SI
Sbjct: 379 WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR--SI 435

Query: 187 HDITTGNL 194
           HD++  +L
Sbjct: 436 HDLSLQDL 443

Dictyostelium discoideum (taxid: 44689)

>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 45/66 (68%)

Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPI 86
          WT++ENK FE ALA Y + TPDRW  VA  + GK+  +V + Y+ L  DV+DIE+GR P 
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71

Query: 87 PGYLSS 92
          P Y S+
Sbjct: 72 PNYRSN 77

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%)

Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPI 86
          W+ +ENK FE ALA+Y + TPDRW  VA  + G+T  +V K Y+ L ED+  IE+G+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 87 PGYLSSSFTLE 97
          P Y ++   ++
Sbjct: 71 PNYRTTGGNMK 81

Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity.

Antirrhinum majus (taxid: 4151)

>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPI 86
          WT ++NK FE ALA Y + TP+RW  VA ++ GKT  +V + Y+ L +D++ IE G VP 
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 87 PGYLSS 92
          P Y +S
Sbjct: 74 PNYRTS 79

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%)

Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPI 86
          WT ++NK FE ALA+Y + TPDRW  VA  + GKT  +  +QY  L  D+  IE G VP 
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 87 PGYLSSS 93
          P Y +++
Sbjct: 74 PDYKTTT 80

Probable transcription factor. Required for female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query: 31 ENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYL 90
          E+K+FE ALA + + TPDRW K+A  + GK+  +V + Y+ L  DV+DIE+GR P P Y 
Sbjct: 15 EDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRYR 74

Query: 91 SSS 93
          +++
Sbjct: 75 NTN 77

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 14/75 (18%)

Query: 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR------ 173
           ++K+   WT EEH RF+  L KYG  D ++IS+ YV ++ PTQV +HAQKYF+R      
Sbjct: 168 KKKQSRYWTPEEHSRFIEALSKYGHKDVKSISQ-YVSTRNPTQVRTHAQKYFLRIDRERG 226

Query: 174 -------QLSGGKDK 181
                   ++GG DK
Sbjct: 227 RKLESKESINGGADK 241

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
224112575	293	predicted protein [Populus trichocarpa]	0.979	0.955	0.663	1e-104
225466356	284	PREDICTED: uncharacterized protein LOC10	0.951	0.957	0.655	1e-102
255579140	288	DNA binding protein, putative [Ricinus c	0.972	0.965	0.650	6e-99
351723575	306	MYB transcription factor MYB75 [Glycine	0.989	0.924	0.633	8e-99
224098517	284	predicted protein [Populus trichocarpa]	0.923	0.929	0.662	4e-97
449465027	295	PREDICTED: transcription factor DIVARICA	0.989	0.959	0.606	3e-92
356539935	299	PREDICTED: uncharacterized protein LOC10	0.958	0.916	0.615	2e-90
356568642	299	PREDICTED: uncharacterized protein LOC10	0.972	0.929	0.610	2e-89
224059326	302	predicted protein [Populus trichocarpa]	0.965	0.913	0.595	6e-88
225434676	307	PREDICTED: uncharacterized protein LOC10	0.989	0.921	0.576	5e-87

>gi|224112575|ref|XP_002316232.1| predicted protein [Populus trichocarpa] gi|222865272|gb|EEF02403.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/288 (66%), Positives = 229/288 (79%), Gaps = 8/288 (2%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
           METL P+ YMSNS NWF Q    +T WT+EENK FE ALAI+ E  PDRW+KVAAMIPGK
Sbjct: 1   METLNPSWYMSNS-NWFTQ----TTEWTREENKEFEIALAIFDEHEPDRWLKVAAMIPGK 55

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHE 120
           TV DVIKQYKELEEDVSDIEAGRVP+PGYLSSSFT +LV  S++DA RKR+L AKS+D +
Sbjct: 56  TVYDVIKQYKELEEDVSDIEAGRVPVPGYLSSSFTFQLVGNSNFDAYRKRSLTAKSADQQ 115

Query: 121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR-QLSGGK 179
           RKKGVPWTE+EH+RFLMGL+K+GKGDWRNISRN+V+SKTPTQVASHAQKYFIR QLSG K
Sbjct: 116 RKKGVPWTEDEHRRFLMGLLKHGKGDWRNISRNFVVSKTPTQVASHAQKYFIRQQLSGVK 175

Query: 180 DKRRPSIHDITTGNLTNSVS-SDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSNNGEV 238
           DKRRPSIHDITT NL ++ + SD  +PSS DQS+++ +QQK  G  KV ++W ++ +G +
Sbjct: 176 DKRRPSIHDITTVNLADATTPSDGDEPSSLDQSDLLLSQQKPAGMQKVLIDWDEAKDGSI 235

Query: 239 MASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF 286
           M  DST  ++   S +E  S+GLK QGQNL    A+HGA + P N  F
Sbjct: 236 MVFDSTHEDLFKSSPYEIPSNGLKFQGQNL-CVGAHHGARINPHNMVF 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466356|ref|XP_002275014.1| PREDICTED: uncharacterized protein LOC100255200 [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/287 (65%), Positives = 222/287 (77%), Gaps = 15/287 (5%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
           METLYPAS++S +SNW+LQ+S+ ST WTKEENKRFE ALAIY E++PDRW+KVA MIPGK
Sbjct: 1   METLYPASHIS-TSNWWLQDSN-STLWTKEENKRFERALAIYDENSPDRWLKVAEMIPGK 58

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRT-LVAKSSDH 119
           TV DVI+QYK LEEDV+DIEAG  PI GYL+ SFTLELV     DA RKRT  + ++SD 
Sbjct: 59  TVWDVIQQYKILEEDVNDIEAGMFPIRGYLAPSFTLELVENRGLDALRKRTATMVRASDQ 118

Query: 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGK 179
           ERKKGVPWTE+EH+RFLMGLIK+GKGDWRNISRN+V+SKTPTQVASHAQKYF RQLSGGK
Sbjct: 119 ERKKGVPWTEDEHRRFLMGLIKHGKGDWRNISRNFVVSKTPTQVASHAQKYFARQLSGGK 178

Query: 180 DKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSNNGEVM 239
           DKRRPSIHDITT NLT++   +N+K  S   S  + +QQKS G PKV L+W  SN+G +M
Sbjct: 179 DKRRPSIHDITTVNLTDTTPPENNKSPSLHHSTALQSQQKSTGAPKVILDWDHSNDGALM 238

Query: 240 ASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF 286
             +ST  N+ MPS +E  S G             +HGAH+ PRNP F
Sbjct: 239 VFNSTHGNLFMPSPYEVASFG------------THHGAHIVPRNPVF 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579140|ref|XP_002530418.1| DNA binding protein, putative [Ricinus communis] gi|223530067|gb|EEF31988.1| DNA binding protein, putative [Ricinus communis]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 188/289 (65%), Positives = 220/289 (76%), Gaps = 11/289 (3%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
           METLYP+ Y  ++S+W+    S+ST WT+EENK+FE ALAIY E  PDRW KVAAMIPGK
Sbjct: 1   METLYPSLYYMSNSDWY----SQSTEWTREENKQFERALAIYDEHEPDRWRKVAAMIPGK 56

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGY-LSSSFTLELVSESDYDANRKRTLVAKSSDH 119
           TV DVIKQY+ELE+DVSDIEAG+VPIPGY  SSSFTLELV   ++D  RKR L  KS D 
Sbjct: 57  TVYDVIKQYRELEDDVSDIEAGKVPIPGYNCSSSFTLELVDNRNFDEYRKRPLATKSGDQ 116

Query: 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR-QLSGG 178
           ERKKGVPWTE+EH+RFL+GL+K+GKGDWRNISRN+V+SKTPTQVASHAQKYFIR QLSG 
Sbjct: 117 ERKKGVPWTEDEHRRFLLGLLKHGKGDWRNISRNFVVSKTPTQVASHAQKYFIRQQLSGV 176

Query: 179 KDKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSL-GTPKVGLEWTDSNNGE 237
           KDKRRPSIHDITT NLTN+  S+ +KPSS DQSN I +QQKS     K+ ++W  S NG 
Sbjct: 177 KDKRRPSIHDITTFNLTNANISEGNKPSSLDQSNTILSQQKSTSAMQKMLIDWKHSKNGS 236

Query: 238 VMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF 286
            M  D T  N ++ S  E  S GLK QGQ+LYA +     H+ P N  F
Sbjct: 237 YMLLDQTHGNFIVSSPNEVASTGLKHQGQHLYAGS----VHINPHNLVF 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723575|ref|NP_001235748.1| MYB transcription factor MYB75 [Glycine max] gi|110931672|gb|ABH02835.1| MYB transcription factor MYB75 [Glycine max]

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 183/289 (63%), Positives = 219/289 (75%), Gaps = 6/289 (2%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
           +ET+YP  +M NS NWF+QES  ST WT+E+NK+FESALAIY   TPDRW KVAAMIPGK
Sbjct: 3   LETIYPPCFMPNS-NWFVQES-HSTEWTREDNKKFESALAIYDNDTPDRWFKVAAMIPGK 60

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHE 120
           TV DVIKQY+ELEEDVS+IEAGRVPIPGYL+SSFT ELV   +YD  R+R    + SD E
Sbjct: 61  TVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVDNHNYDGCRRRLAPVRGSDQE 120

Query: 121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ-LSGGK 179
           RKKGVPWTE+EH+RFLMGL+KYGKGDWRNISRN+V++KTPTQVASHAQKY+IRQ +SGGK
Sbjct: 121 RKKGVPWTEDEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGK 180

Query: 180 DKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDS--NNGE 237
           DKRRPSIHDITT NLT + +SD +KP  F+ S V+  QQK     KV L WT S  N+G 
Sbjct: 181 DKRRPSIHDITTVNLTETSASDKNKPQLFNASPVLAPQQKLNSISKVQLGWTSSHYNDGS 240

Query: 238 VMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF 286
            M  +     + + S+ +  S  LK+QGQ+LY   A H A+ K + P F
Sbjct: 241 FMVFNPNSDALFVSSSPDVTSMALKMQGQDLY-DCALHEAYAKVKVPGF 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098517|ref|XP_002311203.1| predicted protein [Populus trichocarpa] gi|222851023|gb|EEE88570.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 177/267 (66%), Positives = 212/267 (79%), Gaps = 3/267 (1%)

Query: 22  SRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEA 81
           +++T WTKEENK FE ALAI+ E  PDRW+KVAAMIPGKTV DVIKQYK+LEEDV DIEA
Sbjct: 8   AQTTEWTKEENKMFERALAIFDEHEPDRWLKVAAMIPGKTVNDVIKQYKKLEEDVCDIEA 67

Query: 82  GRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIK 141
           GRVP+PGYLSSSFT ELV +S +DA RKR L  KS+D +RKKGVPWTEEEH+RFLMGL+K
Sbjct: 68  GRVPVPGYLSSSFTSELVDDSTFDAYRKRPLNIKSADQQRKKGVPWTEEEHRRFLMGLLK 127

Query: 142 YGKGDWRNISRNYVISKTPTQVASHAQKYFIR-QLSGGKDKRRPSIHDITTGNLTNSVS- 199
           +GKGDWRNISRN+V SKTPTQVASHAQKYFIR QLSG KDKRRPSIHDITT NL ++ + 
Sbjct: 128 HGKGDWRNISRNFVGSKTPTQVASHAQKYFIRQQLSGVKDKRRPSIHDITTLNLADATTP 187

Query: 200 SDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSNNGEVMASDSTQSNMLMPSAFEFGSH 259
           SD  +PSS DQS+++ +QQK  G  KV ++W ++ +G +M  DST  ++   S +E  S+
Sbjct: 188 SDGDEPSSLDQSDLLLSQQKPAGMQKVLIDWDEAKDGSIMVFDSTHEDLFKSSPYEIPSN 247

Query: 260 GLKLQGQNLYATTAYHGAHVKPRNPFF 286
           GLK QGQNL    A+HGA + P N  F
Sbjct: 248 GLKFQGQNL-CVGAHHGARINPHNMVF 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465027|ref|XP_004150230.1| PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] gi|56605378|emb|CAI30890.1| somatic embryogenesis MYB 1 transcription factor [Cucumis sativus]

 Score =  343 bits (881), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 174/287 (60%), Positives = 217/287 (75%), Gaps = 4/287 (1%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
           METLYP+S++S SS WF+ ++  ST WTKEENK FESALAIY + TPDRW KVAA+IPGK
Sbjct: 1   METLYPSSHLS-SSAWFVLDNP-STKWTKEENKMFESALAIYDKETPDRWFKVAALIPGK 58

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGY-LSSSFTLELVSESDYDANRKRTLVAKSSDH 119
           TV DVIKQYKELEEDV +IEAGR P+PGY L+SSF+ E V + ++D  R+++ V + S+H
Sbjct: 59  TVSDVIKQYKELEEDVCEIEAGRFPVPGYDLASSFSFEFVDDRNFDVYRRKSSVGRGSEH 118

Query: 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGK 179
           ERKKGVPWTEEEHK+FL GL+KYGKGDWRNISRN+V SKTPTQVASHAQKYF+RQLSGGK
Sbjct: 119 ERKKGVPWTEEEHKQFLRGLLKYGKGDWRNISRNFVNSKTPTQVASHAQKYFMRQLSGGK 178

Query: 180 DKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSNNGEVM 239
           DKRRPSIHDITT NLT   +S+N K SS DQ + +P+ QKS    K+  +W  S+NG ++
Sbjct: 179 DKRRPSIHDITTVNLTEPTASENEKLSSMDQFSKLPSLQKSPCYQKLLFDWNRSSNGGLL 238

Query: 240 ASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF 286
              S   + LM       ++G+K + Q+    +AY+G + KP    F
Sbjct: 239 GLGSNYGDRLMSFPSGIAANGIKNE-QDQELNSAYYGTYSKPHKSIF 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539935|ref|XP_003538448.1| PREDICTED: uncharacterized protein LOC100788982 isoform 1 [Glycine max]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/291 (61%), Positives = 211/291 (72%), Gaps = 17/291 (5%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
            ET YP  +MSNSS WF QE  + T WT+EENK+FESALAIY + TPDRW++VAAM+PGK
Sbjct: 3   FETSYPTCFMSNSS-WFSQEG-QFTEWTREENKKFESALAIYDKDTPDRWLRVAAMLPGK 60

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHE 120
           TV DVIKQY+ELEEDV +IEAGR+P+PGY +SS TLE+V    YDA RK+    +SSD E
Sbjct: 61  TVYDVIKQYRELEEDVCEIEAGRIPVPGYPTSSLTLEMVDNQCYDACRKKPATLRSSDQE 120

Query: 121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ-LSGGK 179
           RKKGVPWTEEEH+RFLMGL+KYGKGDWRNISRN+V++KTPTQVASHAQKY+IRQ LSGGK
Sbjct: 121 RKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGK 180

Query: 180 D-KRRPSIHDITTGNLTNSVSSDNHKPSSF-DQSNVIPAQQKSLGTPKVGLEW--TDSNN 235
           D KRRPSIHDIT  NLT    SD  KP  F D+S++   QQK    PKV LEW     NN
Sbjct: 181 DNKRRPSIHDITIVNLT----SDQEKPLLFNDESHMTSEQQKLTSMPKVQLEWRINHHNN 236

Query: 236 GEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF 286
           G      S     + P++    S  LKLQGQ+ Y   A+H  + K +N  F
Sbjct: 237 G-----GSNYDMFVSPNSSGISSKTLKLQGQDFYE-CAFHETYAKLKNTGF 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568642|ref|XP_003552519.1| PREDICTED: uncharacterized protein LOC100783469 [Glycine max]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/290 (61%), Positives = 212/290 (73%), Gaps = 12/290 (4%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
            ET +   +MSNSS WF QES   T WT+EENK+FESALAIY + TPDRW++VAAM+PGK
Sbjct: 3   FETPHQTCFMSNSS-WFSQES-HYTEWTREENKKFESALAIYDKDTPDRWLRVAAMLPGK 60

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHE 120
           TV DVIKQY+ELEEDV +IEAGR+P+PGY +SSFTL++V    YDA RK+    +SSD E
Sbjct: 61  TVYDVIKQYRELEEDVCEIEAGRIPVPGYPTSSFTLKMVDNQCYDACRKKPATLRSSDQE 120

Query: 121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ-LSGGK 179
           RKKGVPWTEEEH+RFLMGL+KYGKGDWRNISRN+V++KTPTQVASHAQKY+IRQ LSGGK
Sbjct: 121 RKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGK 180

Query: 180 D-KRRPSIHDITTGNLTNSVSSDNHKPSSF-DQSNVIPAQQKSLGTPKVGLEWTD-SNNG 236
           D KRRPSIHDIT  NLT    SD  KP    D+S++   QQK    PKV LEW +  +NG
Sbjct: 181 DNKRRPSIHDITIVNLT----SDQEKPLLLNDESHMTFEQQKLTSMPKVQLEWINHHDNG 236

Query: 237 EVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF 286
             M  +      + PS+    S  LKLQGQ+ Y   A+H  + K +N  F
Sbjct: 237 SRMVVNPNYDMFMSPSS-GISSKTLKLQGQDFYE-CAFHETYAKLKNSGF 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059326|ref|XP_002299827.1| predicted protein [Populus trichocarpa] gi|222847085|gb|EEE84632.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 172/289 (59%), Positives = 207/289 (71%), Gaps = 13/289 (4%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
           M  L PASY+S S+NW L+ES ++T WT  ENK FE+ALA+Y E TPDRW KVAAMIPGK
Sbjct: 1   MGILSPASYLS-STNWLLEES-KNTKWTPAENKAFENALAVYDEDTPDRWHKVAAMIPGK 58

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANR-------KRTLV 113
           TV DVIKQYKELE DVS IEAG +P+PGY +S FTL+ V  + YD  +       KR+  
Sbjct: 59  TVGDVIKQYKELELDVSYIEAGLIPVPGYSTSPFTLDWVDGNGYDGFKQSYGLGGKRSST 118

Query: 114 AKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173
            + +D ERKKGVPWTEEEHK FLMGL KYGKGDWRNISRN+V+S+TPTQVASHAQKYFIR
Sbjct: 119 GRPADQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVVSRTPTQVASHAQKYFIR 178

Query: 174 QLSGGKDKRRPSIHDITTGNLTNS--VSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWT 231
           QLSGGKDKRR SIHDITT NL ++   S DN +PS  DQ   I  Q  S   P+   +W 
Sbjct: 179 QLSGGKDKRRASIHDITTVNLNDARTPSPDNKRPSP-DQPGAISQQPNSAAMPRTHFQWN 237

Query: 232 DSNNGEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVK 280
             N G  +A +ST +NM M + +   S+GLK+QGQNL    A H ++++
Sbjct: 238 QPNGGGTLAFNSTNANMFMSAPYGISSYGLKMQGQNL-PRGAVHDSYIR 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434676|ref|XP_002280403.1| PREDICTED: uncharacterized protein LOC100244960 [Vitis vinifera] gi|147844863|emb|CAN81229.1| hypothetical protein VITISV_033664 [Vitis vinifera]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 170/295 (57%), Positives = 209/295 (70%), Gaps = 12/295 (4%)

Query: 1   METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
           ME L PASY+SNS+   L E S+S+ WT EENK FE+ALA+Y   TPDRW KVAAMIPGK
Sbjct: 5   MEILSPASYLSNSN--CLLEESKSSRWTPEENKTFENALAVYDRDTPDRWQKVAAMIPGK 62

Query: 61  TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANR-------KRTLV 113
           TV DV KQYKELE DV  IEAG VPIPGY +S FTLE  +   Y+  +       KR   
Sbjct: 63  TVGDVFKQYKELELDVGKIEAGLVPIPGYSTSPFTLEWTTNHGYEGLKQPYGLGGKRPSS 122

Query: 114 AKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173
            + +D ERKKGVPWTEEEHK FL+GL KYGKGDWRNISRN+V+++TPTQVASHAQKYFIR
Sbjct: 123 TRPTDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIR 182

Query: 174 QLSGGKDKRRPSIHDITTGNLTN--SVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWT 231
           QLSGGKDKRR SIHDITT NLT+  + S +N +P S DQS  +P Q  S    +   +W+
Sbjct: 183 QLSGGKDKRRASIHDITTVNLTDTRTPSPENKRPPSPDQSIGVPKQPNSAPMNRTTFQWS 242

Query: 232 DSNNGEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAYHGAHVKPRNPFF 286
             N+G  MA + T  N+ M S +   S+GLK+QGQNL+   A++ +++ P++  F
Sbjct: 243 QPNSGAPMAFNPTHGNIFMSSPYGMNSYGLKMQGQNLHR-AAFNESYIGPQSMVF 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
UNIPROTKB|Q8S9H7	307	DIVARICATA "Transcription fact	0.933	0.869	0.560	3.1e-76
TAIR|locus:2074723	263	AT3G11280 [Arabidopsis thalian	0.895	0.973	0.564	2e-72
TAIR|locus:2166459	277	AT5G05790 [Arabidopsis thalian	0.909	0.938	0.555	4.3e-70
TAIR|locus:2042872	298	AT2G38090 [Arabidopsis thalian	0.699	0.671	0.616	4e-67
TAIR|locus:2154508	288	AT5G58900 [Arabidopsis thalian	0.839	0.833	0.520	6e-64
TAIR|locus:2150149	267	AT5G01200 [Arabidopsis thalian	0.290	0.310	0.722	8.8e-55
TAIR|locus:2028461	314	AT1G49010 [Arabidopsis thalian	0.311	0.283	0.644	4.1e-43
TAIR|locus:2159607	298	AT5G08520 [Arabidopsis thalian	0.615	0.590	0.481	8.5e-43
TAIR|locus:2175478	215	AT5G04760 [Arabidopsis thalian	0.674	0.897	0.439	3.6e-41
TAIR|locus:2171711	337	AT5G23650 [Arabidopsis thalian	0.671	0.569	0.443	1e-36

UNIPROTKB|Q8S9H7 DIVARICATA "Transcription factor DIVARICATA" [Antirrhinum majus (taxid:4151)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 157/280 (56%), Positives = 196/280 (70%)

Query:     1 METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
             ME L P+SY S+SS WFL+ES  +T WT  ENK FE+ALA++ E+TP+RW +VA  +PGK
Sbjct:     1 MEILAPSSYFSSSS-WFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGK 59

Query:    61 TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSS-FTLELVS-------ESDYDANRKRTL 112
             TV DV++QYKELE+DVS IEAG VP+PGY +SS FTLE  S       +  Y    +++ 
Sbjct:    60 TVGDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQSYGTGGRKSS 119

Query:   113 VAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172
               + S+ ERKKGVPWTEEEHK FLMGL KYGKGDWRNISRN+VI++TPTQVASHAQKYFI
Sbjct:   120 SGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFI 179

Query:   173 RQLSGGKDKRRPSIHDITTGNLTNSV--SSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEW 230
             RQLSGGKDKRR SIHDITT NL+++   S DN KP S    ++   Q  S    K+  +W
Sbjct:   180 RQLSGGKDKRRASIHDITTVNLSDNQTPSPDNKKPPSSPDHSMAQQQTSSTSIHKLPFQW 239

Query:   231 TDSNNGEVM--ASDSTQSNMLMPSAFEFGSHGLKLQGQNL 268
               ++N  +M  AS     NM   + F   S+G K+QGQ +
Sbjct:   240 DQTSNETIMGFASSGHHGNMFQSNPFGMNSYGFKMQGQQM 279

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2074723 AT3G11280 [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 158/280 (56%), Positives = 195/280 (69%)

Query:     1 METLYPASYMSNSSNWFL-QE-----SSRSTSWTKEENKRFESALAIYSESTPDRWIKVA 54
             METL+P S++  S + F+ QE     SS S SWTKEENK FE ALAIY+E +PDRW KVA
Sbjct:     1 METLHPFSHLPISDHRFVVQEMVSLHSSSSGSWTKEENKMFERALAIYAEDSPDRWFKVA 60

Query:    55 AMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVA 114
             +MIPGKTV DV+KQY +LEEDV DIEAGRVPIPGY ++S  L      D D  RKR   A
Sbjct:    61 SMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPIPGYPAASSPLGF----DTDMCRKRPSGA 116

Query:   115 KSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174
             + SD +RKKGVPWTEEEH+RFL+GL+KYGKGDWRNISRN+V+SKTPTQVASHAQKY+ RQ
Sbjct:   117 RGSDQDRKKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYYQRQ 176

Query:   175 LSGGKDKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDSN 234
             LSG KDKRRPSIHDITTGNL N+    N   S  D  +++P     LG     ++  D+ 
Sbjct:   177 LSGAKDKRRPSIHDITTGNLLNA----NLNRSFSDHRDILP----DLGF----IDKDDTE 224

Query:   235 NGEV-MASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTA 273
              G + M  + +  N+  PS   F +  +   G+N+++  A
Sbjct:   225 EGVIFMGQNLSSENLFSPSPTSFEA-AINFAGENVFSAGA 263

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2166459 AT5G05790 [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 156/281 (55%), Positives = 196/281 (69%)

Query:     1 METLYPA-SYMSNSSNWFL-QESS--RSTSWTKEENKRFESALAIYSESTPDRWIKVAAM 56
             METL+P  S++  S + F+ QE    +S+SWTKEENK+FE ALA+Y++ TPDRW KVAAM
Sbjct:     1 METLHPLLSHVPTSDHRFVVQEMMCLQSSSWTKEENKKFERALAVYADDTPDRWFKVAAM 60

Query:    57 IPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSS---FTLELVSESDYDANRKRTLV 113
             IPGKT+ DV++QY +LEED+ DIEAG VPIPGY S +   F  ++VS  D+DA RK    
Sbjct:    61 IPGKTISDVMRQYSKLEEDLFDIEAGLVPIPGYRSVTPCGFD-QVVSPRDFDAYRKLPNG 119

Query:   114 AKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173
             A+  D +R+KGVPWTEEEH+RFL+GL+KYGKGDWRNISRN+V SKTPTQVASHAQKY+ R
Sbjct:   120 ARGFDQDRRKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKYYQR 179

Query:   174 QLSGGKDKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTPKVGLEWTDS 233
             QLSG KDKRRPSIHDITT NL N+  S   +PSS D   ++  Q +    PK+G  +TD 
Sbjct:   180 QLSGAKDKRRPSIHDITTVNLLNANLS---RPSS-DHGCLVSKQAE----PKLG--FTDR 229

Query:   234 NNGEVMASDSTQSNMLMPSAFEFGSHGLKLQGQNLYATTAY 274
             +N E       Q+   + S F      +K  G N+Y    Y
Sbjct:   230 DNAEEGVMFLGQN---LSSVFSSYDPAIKFSGANVYGEGGY 267

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2042872 AT2G38090 [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 135/219 (61%), Positives = 168/219 (76%)

Query:     1 METLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGK 60
             +E + PA+Y+  +SNW  QE+ R T WT EENK+FE+ALA Y + TPDRW +VAAM+PGK
Sbjct:     5 IEVMSPATYLE-TSNWLFQEN-RGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLPGK 62

Query:    61 TVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLE------LVSESDYDANR------ 108
             TV DVIKQY+ELEEDVSDIEAG +PIPGY S SFTL+          + ++ N       
Sbjct:    63 TVGDVIKQYRELEEDVSDIEAGLIPIPGYASDSFTLDWGGYDGASGNNGFNMNGYYFSAA 122

Query:   109 --KRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASH 166
               KR   A++++HERKKGVPWTEEEH++FLMGL KYGKGDWRNI+RN+V ++TPTQVASH
Sbjct:   123 GGKRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASH 182

Query:   167 AQKYFIRQLSGGKDKRRPSIHDITTGNLTNS---VSSDN 202
             AQKYFIRQ++GGKDKRR SIHDITT N+ +S    ++DN
Sbjct:   183 AQKYFIRQVNGGKDKRRSSIHDITTVNIPDSPDAAAADN 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2154508 AT5G58900 [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 139/267 (52%), Positives = 176/267 (65%)

Query:     1 METLYPASYMSNSSNWFLQE-------SSRSTSWTKEENKRFESALAIYSESTPDRWIKV 53
             ME + P++   +  NW ++E       S    +WT  ENK FE+ALA+Y ++TPDRW KV
Sbjct:     1 MEVMRPSTSHVSGGNWLMEETKSGVAASGEGATWTAAENKAFENALAVYDDNTPDRWQKV 60

Query:    54 AAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSS-FTLELVS--------ESDY 104
             AA+IPGKTV DVI+QY +LE DVS IEAG +P+PGY++S  FTL+           +  +
Sbjct:    61 AAVIPGKTVSDVIRQYNDLEADVSSIEAGLIPVPGYITSPPFTLDWAGGGGGCNGFKPGH 120

Query:   105 DANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVA 164
                 KR+   +S + ERKKGVPWTEEEHK FLMGL KYGKGDWRNISRN+VI++TPTQVA
Sbjct:   121 QVCNKRSQAGRSPELERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVA 180

Query:   165 SHAQKYFIRQLSGGKDKRRPSIHDITTGNLTNSVSSDNHKPSSFDQSNVIPAQQKSLGTP 224
             SHAQKYFIRQLSGGKDKRR SIHDITT NL    S + +K      S+++   Q+S  T 
Sbjct:   181 SHAQKYFIRQLSGGKDKRRASIHDITTVNLEEEASLETNK------SSIVVGDQRSRLT- 233

Query:   225 KVGLEW--TDSNNGEVMASDSTQSNML 249
                  W  TD+N  +  A + T  N +
Sbjct:   234 --AFPWNQTDNNGTQADAFNITIGNAI 258

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2150149 AT5G01200 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
 Identities = 60/83 (72%), Positives = 74/83 (89%)

Query:   118 DHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSG 177
             + ERKKGVPWTE+EH RFLMGL KYGKGDWRNI++++V ++TPTQVASHAQKYF+RQL+ 
Sbjct:   139 EKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTD 198

Query:   178 GKDKRRPSIHDITTGNLTNSVSS 200
             GKDKRR SIHDITT N+ ++ +S
Sbjct:   199 GKDKRRSSIHDITTVNIPDADAS 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2028461 AT1G49010 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 58/90 (64%), Positives = 73/90 (81%)

Query:   117 SDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176
             ++ ER+KG+PWTEEEH+ FL+GL K+GKGDWR+ISRN+VIS+TPTQVASHAQKYFIR  S
Sbjct:   126 AEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNS 185

Query:   177 GGKDKRRPSIHDITT-GNLTNSVSSDNHKP 205
               +D+RR SIHDITT  N   +V+    +P
Sbjct:   186 MNRDRRRSSIHDITTVNNQAPAVTGGGQQP 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2159607 AT5G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 89/185 (48%), Positives = 126/185 (68%)

Query:    18 LQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVS 77
             ++E S  + W++E++  FE ALA  ++ + +RW K+AA +PGK+V  + + Y+ L EDV+
Sbjct:     3 VEEVSDGSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVT 62

Query:    78 DIEAGRVPIPGYLSSSFTLELVSESDYDANR-------KRTLVAKS-SDHERKKGVPWTE 129
              IE+G VP+P Y S   +     +    + +       +     KS SD ER+KG+ WTE
Sbjct:    63 RIESGCVPLPAYGSPEGSNGHAGDEGASSKKGGNSHAGESNQAGKSKSDQERRKGIAWTE 122

Query:   130 EEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHDI 189
             +EH+ FL+GL KYGKGDWR+ISRN+V+++TPTQVASHAQKYFIR  S  KD+RR SIHDI
Sbjct:   123 DEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDI 182

Query:   190 TT-GN 193
             T+ GN
Sbjct:   183 TSVGN 187

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2175478 AT5G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 87/198 (43%), Positives = 131/198 (66%)

Query:    24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGR 83
             S+ WT+ E+K FE AL ++ E +P+RW ++A  +  K+  +V + Y+ L  DV +I++GR
Sbjct:     3 SSQWTRSEDKMFEQALVLFPEGSPNRWERIADQLH-KSAGEVREHYEVLVHDVFEIDSGR 61

Query:    84 VPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYG 143
             V +P Y+  S      + + +D+  + +  +K  + ERK+G PWTE EHK FL+GL +YG
Sbjct:    62 VDVPDYMDDS----AAAAAGWDSAGQISFGSKHGESERKRGTPWTENEHKLFLIGLKRYG 117

Query:   144 KGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHDITTGNLTNSVSSDNH 203
             KGDWR+ISRN V+++TPTQVASHAQKYF+RQ S  K+++R SIHDITT + T ++   N 
Sbjct:   118 KGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDATLAMPGSNM 177

Query:   204 KPSSFDQSNVIPAQQKSL 221
               +    S V   QQ+ +
Sbjct:   178 DWTGQHGSPVQAPQQQQI 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2171711 AT5G23650 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 90/203 (44%), Positives = 126/203 (62%)

Query:    19 QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSD 78
             QE S  +SW+K+++  FE ALAIY++ T  RW K+A ++PGKT+  VI+ Y  L  DV  
Sbjct:     5 QEISVGSSWSKDDDIAFEKALAIYNDKTEIRWKKIATVVPGKTLEQVIEHYNILARDVML 64

Query:    79 IEAGRVPIPGY---LS----SSFTLEL-VSESDYDANRKRTLVAKSS-DHERKKGVPWTE 129
             IE+G V +P Y   L     ++F  E  + E   D   +     KS    +R++GVPW  
Sbjct:    65 IESGCVRLPDYDDFLEEPNHNAFGKERSILEGGNDRKYESKHKGKSKLKQKRRRGVPWKP 124

Query:   130 EEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHDI 189
              EH++FL GL KYGKGDWR+ISR+ V+++T TQVASHAQKYF    S  K ++RPSIHDI
Sbjct:   125 FEHRQFLHGLKKYGKGDWRSISRHCVVTRTSTQVASHAQKYFAHINSEDKKRKRPSIHDI 184

Query:   190 TTGNLTNSVSSDNHKPSSFDQSN 212
             T      S+S+   +P ++ + N
Sbjct:   185 TIAE-NKSIST-KQRPITWQKIN 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9H7	DIV_ANTMA	No assigned EC number	0.5535	0.9335	0.8697	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	7e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-09
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-08
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-08
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-05
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-05
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.001

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 70.1 bits (172), Expect = 7e-16
 Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 122 KKGVPWTEEEHKRFLMGLIKYGKGDW---RNISRNYVISK-TPTQVASHAQKYFIRQ 174
           K  V WTE+ H RFL  + K G  DW   + I    V+   T  QVASH QKY ++Q
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY 170
           PWT EE +  +  + K+G G+W  I++ ++  +T  Q  +    Y
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAK-HLPGRTDNQCKNRWNNY 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173
              WTEEE +  +  + KYGK +W  I++  +  +T  Q     +     
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171
           PWTEEE +  L  + KYGK +W  I++  +  +TP Q     +   
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72
           WT+EE++    A+  Y +   + W K+A  +PG+T     ++++ L
Sbjct: 1  PWTEEEDELLLEAVKKYGK---NNWEKIAKELPGRTPKQCRERWRNL 44

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72
            WT+EE++     +  Y +   + W K+A  +PG+T     ++++ L
Sbjct: 2  GEWTEEEDELLIELVKKYGK---NNWEKIAKELPGRTAEQCRERWRNL 46

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQY 69
           WT EE++    A+  +       W K+A  +PG+T      ++
Sbjct: 3  PWTPEEDELLIEAVKKHG---NGNWSKIAKHLPGRTDNQCKNRW 43

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNY--VISKTPTQ 162
             WT+EE +  + G+ KYG G+W  I ++Y  V ++T   
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVD 40

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PLN03212	249	Transcription repressor MYB5; Provisional	99.86
PLN03091	459	hypothetical protein; Provisional	99.84
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.79
KOG0724	335	consensus Zuotin and related molecular chaperones	99.51
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.5
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.49
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.46
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.45
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.26
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.24
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.17
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.14
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.0
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.99
PLN03212	249	Transcription repressor MYB5; Provisional	98.88
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.88
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.77
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.76
PLN03091	459	hypothetical protein; Provisional	98.74
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.69
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.61
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.32
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.78
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	97.64
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.61
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	97.6
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.51
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.44
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.34
KOG4167	907	consensus Predicted DNA-binding protein, contains	97.12
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.1
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	96.85
KOG0051	607	consensus RNA polymerase I termination factor, Myb	96.81
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.75
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.27
KOG4329	445	consensus DNA-binding protein [General function pr	96.26
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.17
KOG1194	534	consensus Predicted DNA-binding protein, contains	96.1
COG5147	512	REB1 Myb superfamily proteins, including transcrip	95.71
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.21
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.94
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.22
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.73
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	93.7
KOG4167	907	consensus Predicted DNA-binding protein, contains	93.68
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	93.18
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	92.25
KOG1878	1672	consensus Nuclear receptor coregulator SMRT/SMRTER	91.48
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	91.41
PLN03162	526	golden-2 like transcription factor; Provisional	90.79
KOG3841	455	consensus TEF-1 and related transcription factor,	90.16
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	90.13
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	89.96
KOG4329	445	consensus DNA-binding protein [General function pr	89.21
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	89.02
KOG4468	782	consensus Polycomb-group transcriptional regulator	87.65
KOG4468	782	consensus Polycomb-group transcriptional regulator	87.59
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	87.0
PRK13923	170	putative spore coat protein regulator protein YlbO	86.45
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	83.64
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	81.12
KOG2656	445	consensus DNA methyltransferase 1-associated prote	80.35
KOG4282	345	consensus Transcription factor GT-2 and related pr	80.15

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.86  E-value=2.5e-21  Score=177.18  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=91.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC-CCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI-PGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSE  101 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v-PGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~  101 (286)
                      +.+.||+|||++|.++|++|+..   +|..||..+ ++||.+||++||.+.+.            |..            
T Consensus        24 KRg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~~g~gRT~KQCReRW~N~L~------------P~I------------   76 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKEGEG---RWRSLPKRAGLLRCGKSCRLRWMNYLR------------PSV------------   76 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcc---cHHHHHHhhhcCCCcchHHHHHHHhhc------------hhc------------
Confidence            66789999999999999999854   699999988 59999999999998775            221            


Q ss_pred             ccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          102 SDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       102 ~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                                           +.++||+|||++|++++.+||. +|..||+ +|++||..||++||..++++..
T Consensus        77 ---------------------~kgpWT~EED~lLlel~~~~Gn-KWs~IAk-~LpGRTDnqIKNRWns~LrK~l  127 (249)
T PLN03212         77 ---------------------KRGGITSDEEDLILRLHRLLGN-RWSLIAG-RIPGRTDNEIKNYWNTHLRKKL  127 (249)
T ss_pred             ---------------------ccCCCChHHHHHHHHHHHhccc-cHHHHHh-hcCCCCHHHHHHHHHHHHhHHH
Confidence                                 2369999999999999999998 9999997 9999999999999988877653

>PLN03091 hypothetical protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=182.95  Aligned_cols=103  Identities=15%  Similarity=0.288  Sum_probs=91.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSE  101 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~  101 (286)
                      +.+.||.|||++|+++|.+|+..   .|..||..++ |||.+||++||.+.++            |.             
T Consensus        13 rKg~WTpEEDe~L~~~V~kyG~~---nWs~IAk~~g~gRT~KQCRERW~NyLd------------P~-------------   64 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITKYGHG---CWSSVPKQAGLQRCGKSCRLRWINYLR------------PD-------------   64 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcC---CHHHHhhhhccCcCcchHhHHHHhccC------------Cc-------------
Confidence            56789999999999999999965   5999999885 9999999999998765            21             


Q ss_pred             ccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          102 SDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       102 ~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                                         . +.++||+|||++|++++++||. +|..||+ +|++||+.||++||...++|..
T Consensus        65 -------------------I-kKgpWT~EED~lLLeL~k~~Gn-KWskIAk-~LPGRTDnqIKNRWnslLKKkl  116 (459)
T PLN03091         65 -------------------L-KRGTFSQQEENLIIELHAVLGN-RWSQIAA-QLPGRTDNEIKNLWNSCLKKKL  116 (459)
T ss_pred             -------------------c-cCCCCCHHHHHHHHHHHHHhCc-chHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Confidence                               1 2369999999999999999998 9999996 9999999999999988777753

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.79  E-value=2.6e-19  Score=163.34  Aligned_cols=103  Identities=15%  Similarity=0.225  Sum_probs=92.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES  102 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~  102 (286)
                      .+.||.|||.+|.+.|..|+.+   +|..||..++ ||+.++|+.||.+.+.            |+              
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~R~GKSCRlRW~NyLr------------P~--------------   59 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLRRCGKSCRLRWTNYLR------------PD--------------   59 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCCccchHHHHHhhcccC------------CC--------------
Confidence            4899999999999999999977   6999999999 9999999999987543            11              


Q ss_pred             cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196          103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s  176 (286)
                                         .|.+.||+|||++|+++..++|. +|..||+ ++||||+..|++||.-.++|...
T Consensus        60 -------------------ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt~lkkkl~  112 (238)
T KOG0048|consen   60 -------------------LKRGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNTHLKKKLL  112 (238)
T ss_pred             -------------------ccCCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHHHHHHHHH
Confidence                               23469999999999999999999 9999997 99999999999999988877754

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3.3e-14  Score=134.74  Aligned_cols=184  Identities=41%  Similarity=0.530  Sum_probs=146.9

Q ss_pred             CCccccCCCC----CCCCCHHHHHHHHHHHHHhCCC----CCchhHHHhhhCCC-CCHHHHHHHHHHhhhhhhhhccCCC
Q 023196           14 SNWFLQESSR----STSWTKEENKRFESALAIYSES----TPDRWIKVAAMIPG-KTVLDVIKQYKELEEDVSDIEAGRV   84 (286)
Q Consensus        14 ~~~~~~~~~~----~~~WT~EEdk~Le~Ala~~~~~----tpdRW~kIAa~vPG-RT~~QV~~rYk~L~~dv~~IE~G~v   84 (286)
                      ..|.+++...    ...|+.++.+.|++|++.+...    ++++|.+++++||+ ++..+++++|..+..++..++++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~   96 (335)
T KOG0724|consen   17 ALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQK   96 (335)
T ss_pred             hhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCC
Confidence            4566655422    3669999999999999999864    78999999999999 9999999999999999999999999


Q ss_pred             CCCCCCCCc--------chhhhcc---cccchhh---------h---hhhcc-----cccccccCccCCCCCHHHHHHHH
Q 023196           85 PIPGYLSSS--------FTLELVS---ESDYDAN---------R---KRTLV-----AKSSDHERKKGVPWTEEEHKRFL  136 (286)
Q Consensus        85 ~~P~y~~~~--------f~l~~~~---~~~~dg~---------~---kr~~~-----~r~~~qerkKg~pWT~EEd~lll  136 (286)
                      ++|.|....        |...|..   ...|...         .   .+...     ....+..++++.+|++.++++++
T Consensus        97 ~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (335)
T KOG0724|consen   97 PFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVL  176 (335)
T ss_pred             CccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHH
Confidence            999996421        1111211   1112110         0   11110     12235667788999999999999


Q ss_pred             HHHHHhCCCchhcchhhhcCCCCHHHHHHHHH-----HHHHHHhcCCCCCCCCCccccccccccCC
Q 023196          137 MGLIKYGKGDWRNISRNYVISKTPTQVASHAQ-----KYFIRQLSGGKDKRRPSIHDITTGNLTNS  197 (286)
Q Consensus       137 ~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~q-----ky~~r~~s~~k~krr~sihdit~~~~~~~  197 (286)
                      .++.++|++.|..|+++++..|++.|+.+|++     +|+.+.....++++|.++||++.+.....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  242 (335)
T KOG0724|consen  177 LALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITTASEAED  242 (335)
T ss_pred             hhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhccchhhh
Confidence            99999999999999999999999999999999     99999999999999999999998876655

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.50  E-value=2.6e-14  Score=104.61  Aligned_cols=52  Identities=46%  Similarity=0.716  Sum_probs=46.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCch---hcchhhhcCCC-CHHHHHHHHHHHHHHH
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDW---RNISRNYVISK-TPTQVASHAQKYFIRQ  174 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W---~~IA~~~V~tR-T~~Q~~sh~qky~~r~  174 (286)
                      ++..||+|||.+||+||+.||.|+|   +.|+..++.+| |..||+||+||||.++
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~   57 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ   57 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            3468999999999999999999999   99997556677 9999999999999863

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.49  E-value=1.1e-13  Score=140.20  Aligned_cols=105  Identities=24%  Similarity=0.468  Sum_probs=90.1

Q ss_pred             CCcc--ccCCCCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCC
Q 023196           14 SNWF--LQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLS   91 (286)
Q Consensus        14 ~~~~--~~~~~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~   91 (286)
                      .+|.  ++.+.+.+.||.+||.+|..||+.|++.   .|-+|-+.||||+..||++||.++++-                
T Consensus       348 ~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k---dw~k~R~~vPnRSdsQcR~RY~nvL~~----------------  408 (939)
T KOG0049|consen  348 TRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK---DWAKVRQAVPNRSDSQCRERYTNVLNR----------------  408 (939)
T ss_pred             hhheeccCccccCCCCCCHHHHHHHHHHHHhCcc---chhhHHHhcCCccHHHHHHHHHHHHHH----------------
Confidence            3455  2445578999999999999999999976   499999999999999999999998761                


Q ss_pred             CcchhhhcccccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196           92 SSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus        92 ~~f~l~~~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                                                   +.|.+.||-.||..|+.+|++||.|.|.+||. ++|.||..|..++-
T Consensus       409 -----------------------------s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~-~Lp~~t~~q~~rrR  454 (939)
T KOG0049|consen  409 -----------------------------SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAM-LLPKKTSRQLRRRR  454 (939)
T ss_pred             -----------------------------hhccCceeecchHHHHHHHHHHccchHHHHHH-HccccchhHHHHHH
Confidence                                         12346899999999999999999999999996 99999997755543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.46  E-value=1.5e-13  Score=139.21  Aligned_cols=104  Identities=23%  Similarity=0.497  Sum_probs=91.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhccccc
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESD  103 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~~  103 (286)
                      ..+||+|||.+|..+|..--.+....|.+|-.+||||+..|.|-||-..++            |+               
T Consensus       305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~Ld------------Ps---------------  357 (939)
T KOG0049|consen  305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLD------------PS---------------  357 (939)
T ss_pred             hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccC------------cc---------------
Confidence            368999999999999999888888899999999999999999999987654            21               


Q ss_pred             chhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196          104 YDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       104 ~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r  173 (286)
                                        .|.++||.+||.+|+.+|.+||..+|.+|-. .||+|+..||+.||.+.+.+
T Consensus       358 ------------------ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~-~vPnRSdsQcR~RY~nvL~~  408 (939)
T KOG0049|consen  358 ------------------VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQ-AVPNRSDSQCRERYTNVLNR  408 (939)
T ss_pred             ------------------ccCCCCCCHHHHHHHHHHHHhCccchhhHHH-hcCCccHHHHHHHHHHHHHH
Confidence                              2457999999999999999999889999985 99999999999987665554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.45  E-value=8.1e-14  Score=97.43  Aligned_cols=46  Identities=37%  Similarity=0.727  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC-CCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~-tRT~~Q~~sh~qky~  171 (286)
                      .+||+|||++|+++|.+||.++|..||. .|+ +||..||++||++|.
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhhC
Confidence            4899999999999999999966999996 899 999999999999873

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.26  E-value=2.4e-11  Score=87.96  Aligned_cols=43  Identities=23%  Similarity=0.472  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196           27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        27 WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~   73 (286)
                      ||.|||.+|..++..|+.    .|..||++||.||..+|+.||...+
T Consensus         1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~Rt~~~~~~r~~~~l   43 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN----DWKKIAEHLGNRTPKQCRNRWRNHL   43 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-----HHHHHHHSTTS-HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCc----CHHHHHHHHCcCCHHHHHHHHHHHC
Confidence            999999999999999975    4999999996699999999999833

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.24  E-value=1.4e-11  Score=86.10  Aligned_cols=46  Identities=30%  Similarity=0.666  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELE   73 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~   73 (286)
                      +.||.||+++|.+||.+|+.+   +|..||..|| |||..||+.||..++
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            579999999999999999976   7999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.17  E-value=3.4e-11  Score=81.24  Aligned_cols=46  Identities=28%  Similarity=0.529  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      .+||++|+.+|+.++..||.++|..||. .+++||+.+|+++|..++
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~-~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            4899999999999999999559999996 999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.14  E-value=5.7e-11  Score=79.14  Aligned_cols=44  Identities=36%  Similarity=0.733  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHH
Q 023196          126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY  170 (286)
Q Consensus       126 pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky  170 (286)
                      +||+||+++|+.++.+||.++|..||+ .+++||..||++||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~-~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHh-HcCCCCHHHHHHHHHHh
Confidence            599999999999999999559999996 99999999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.00  E-value=2.5e-10  Score=82.61  Aligned_cols=43  Identities=33%  Similarity=0.629  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       127 WT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      ||+|||.+|+.++++||. +|..||+ +++.||+.||+.||.+++
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~~Rt~~~~~~r~~~~l   43 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAE-HLGNRTPKQCRNRWRNHL   43 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHH-HSTTS-HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHH-HHCcCCHHHHHHHHHHHC
Confidence            999999999999999997 9999996 888899999999997744

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.99  E-value=1.2e-09  Score=73.65  Aligned_cols=46  Identities=26%  Similarity=0.574  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~   73 (286)
                      ..||++|+++|..+++.|+..   +|..||..||+||..||+.+|..+.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~---~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            579999999999999999942   4999999999999999999999865

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.88  E-value=1.9e-09  Score=99.33  Aligned_cols=50  Identities=24%  Similarity=0.444  Sum_probs=45.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhc-CCCCHHHHHHHHHHHHHH
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYV-ISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V-~tRT~~Q~~sh~qky~~r  173 (286)
                      +.++||+|||++|+.+|++||..+|..||+ .+ ++||+.||+.||.+|+..
T Consensus        24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L~P   74 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYLRP   74 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhhch
Confidence            346999999999999999999889999997 66 699999999999999854

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.88  E-value=5.4e-09  Score=69.46  Aligned_cols=44  Identities=30%  Similarity=0.672  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196           26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL   72 (286)
Q Consensus        26 ~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L   72 (286)
                      .||.||+++|..++..|+.   .+|..||..||+||..||+.+|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            4999999999999999994   2599999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.77  E-value=2.3e-08  Score=101.91  Aligned_cols=103  Identities=17%  Similarity=0.401  Sum_probs=85.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES  102 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~  102 (286)
                      ..+.||+||++.|...+.+++..    |..|+.+| ||.+.+|+++|...+.            ++              
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~----W~~Ig~~l-gr~P~~crd~wr~~~~------------~g--------------  431 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGND----WKEIGKAL-GRMPMDCRDRWRQYVK------------CG--------------  431 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhccc----HHHHHHHH-ccCcHHHHHHHHHhhc------------cc--------------
Confidence            56899999999999999999865    99999999 8999999999998653            00              


Q ss_pred             cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHH-------Hh-------C-----C-----C-chhcchhhhcCC
Q 023196          103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLI-------KY-------G-----K-----G-DWRNISRNYVIS  157 (286)
Q Consensus       103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~-------ky-------G-----~-----g-~W~~IA~~~V~t  157 (286)
                                       ...+..+||.||.++||..|.       .|       |     .     + .|..|+. .++|
T Consensus       432 -----------------~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse-~~~T  493 (607)
T KOG0051|consen  432 -----------------SKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE-MLGT  493 (607)
T ss_pred             -----------------cccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH-hhcC
Confidence                             002336999999999999995       33       1     1     1 7999996 9999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 023196          158 KTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       158 RT~~Q~~sh~qky~~r~  174 (286)
                      |+..||+.+|.+...+-
T Consensus       494 R~~~qCr~Kw~kl~~~~  510 (607)
T KOG0051|consen  494 RSRIQCRYKWYKLTTSP  510 (607)
T ss_pred             CCcchHHHHHHHHHhhH
Confidence            99999999999887765

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=1.3e-08  Score=101.60  Aligned_cols=103  Identities=20%  Similarity=0.426  Sum_probs=89.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES  102 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~  102 (286)
                      +++.|+.-||+.|..||.+|+++   .|.+||..++-||..||..+|.+.++..                          
T Consensus         6 kggvwrntEdeilkaav~kyg~n---qws~i~sll~~kt~rqC~~rw~e~ldp~--------------------------   56 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAVMKYGKN---QWSRIASLLNRKTARQCKARWEEWLDPA--------------------------   56 (617)
T ss_pred             ecceecccHHHHHHHHHHHcchH---HHHHHHHHHhhcchhHHHHHHHHHhCHH--------------------------
Confidence            56889999999999999999987   5999999999999999999999876521                          


Q ss_pred             cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196          103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s  176 (286)
                                         .+..-|+.|||..||.+.+.+.. .|+.|+-  +-+||..||-.||.+..--..+
T Consensus        57 -------------------i~~tews~eederlLhlakl~p~-qwrtIa~--i~gr~~~qc~eRy~~ll~~~~s  108 (617)
T KOG0050|consen   57 -------------------IKKTEWSREEDERLLHLAKLEPT-QWRTIAD--IMGRTSQQCLERYNNLLDVYVS  108 (617)
T ss_pred             -------------------HhhhhhhhhHHHHHHHHHHhcCC-ccchHHH--HhhhhHHHHHHHHHHHHHHHHh
Confidence                               12357999999999999999998 9999995  8899999999998776655543

>PLN03091 hypothetical protein; Provisional

Probab=98.74  E-value=8.3e-09  Score=101.69  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhhhc-CCCCHHHHHHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYV-ISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V-~tRT~~Q~~sh~qky~~r  173 (286)
                      .++||+|||++|+++|++||.++|..||+ .+ ++||+.||+.||.+|+..
T Consensus        14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyLdP   63 (459)
T PLN03091         14 KGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYLRP   63 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhccCC
Confidence            36899999999999999999999999997 66 599999999999987653

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.69  E-value=1.1e-08  Score=93.59  Aligned_cols=48  Identities=17%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC-CCCHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQVASHAQKYFIR  173 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~-tRT~~Q~~sh~qky~~r  173 (286)
                      +|||.|||.+|+..|++||.|+|..|++ ..+ +|+..+||-||.+|++-
T Consensus        10 GpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyLrP   58 (238)
T KOG0048|consen   10 GPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYLRP   58 (238)
T ss_pred             CCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhcccCC
Confidence            6999999999999999999999999997 898 99999999999999864

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.61  E-value=7e-08  Score=97.21  Aligned_cols=104  Identities=20%  Similarity=0.366  Sum_probs=89.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES  102 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~  102 (286)
                      +.+.|+..||..|..++..|+..   .|.+||+.|.-++..||..||..-++            |.              
T Consensus        19 k~gsw~~~EDe~l~~~vk~l~~n---nws~vas~~~~~~~kq~~~rw~~~ln------------p~--------------   69 (512)
T COG5147          19 KGGSWKRTEDEDLKALVKKLGPN---NWSKVASLLISSTGKQSSNRWNNHLN------------PQ--------------   69 (512)
T ss_pred             cCCCCCCcchhHHHHHHhhcccc---cHHHHHHHhcccccccccchhhhhhc------------hh--------------
Confidence            66789999999999999988855   59999999988999999999965332            11              


Q ss_pred             cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196          103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s  176 (286)
                                         .+...|++||++.++.+-..+|. .|..||. ++++||..||..+|.+.+....+
T Consensus        70 -------------------lk~~~~~~eed~~li~l~~~~~~-~wstia~-~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          70 -------------------LKKKNWSEEEDEQLIDLDKELGT-QWSTIAD-YKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             -------------------cccccccHHHHHHHHHHHHhcCc-hhhhhcc-ccCccchHHHHHHHHHHhhhhhc
Confidence                               12358999999999999999999 8999996 99999999999999888887764

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.32  E-value=5e-07  Score=88.89  Aligned_cols=50  Identities=28%  Similarity=0.513  Sum_probs=47.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ..||.+|+-+||+|+..||-|+|..||. +|++||..+|+.||.|+|...-
T Consensus        73 ~~WtadEEilLLea~~t~G~GNW~dIA~-hIGtKtkeeck~hy~k~fv~s~  122 (438)
T KOG0457|consen   73 PSWTADEEILLLEAAETYGFGNWQDIAD-HIGTKTKEECKEHYLKHFVNSP  122 (438)
T ss_pred             CCCChHHHHHHHHHHHHhCCCcHHHHHH-HHcccchHHHHHHHHHHHhcCc
Confidence            4799999999999999999999999995 9999999999999999998763

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.78  E-value=1.8e-05  Score=78.74  Aligned_cols=41  Identities=34%  Similarity=0.584  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                      .+||.+|--+||+||+.||. +|.+||+ +|++||+.||.-|+
T Consensus       280 k~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~F  320 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILHF  320 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHHH
Confidence            48999999999999999999 9999997 99999999999985

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=97.64  E-value=0.00029  Score=76.82  Aligned_cols=136  Identities=24%  Similarity=0.320  Sum_probs=88.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh----------hhhhccCCCCCCCCCCCcc
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED----------VSDIEAGRVPIPGYLSSSF   94 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d----------v~~IE~G~v~~P~y~~~~f   94 (286)
                      ..||.-|=..|.+|.++|+.+   ....||..|.|||..+|++.++.+-.-          +..||.|...+-....   
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~---~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~---  898 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRN---DIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDE---  898 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHh---HHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH---
Confidence            569999999999999999965   589999999999999998655443321          2234544311100000   


Q ss_pred             hhhhcccccchhhhhhhcccccc------cccCccCCCCCHHHHHHHHHHHHHhCCCchhcchh-----------hhcCC
Q 023196           95 TLELVSESDYDANRKRTLVAKSS------DHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISR-----------NYVIS  157 (286)
Q Consensus        95 ~l~~~~~~~~dg~~kr~~~~r~~------~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~-----------~~V~t  157 (286)
                              -...+..+....+.+      .-...++..+|+|||+.||-.+.+||-|+|..|-.           -|+.+
T Consensus       899 --------~~~~~~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~s  970 (1033)
T PLN03142        899 --------IMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKS  970 (1033)
T ss_pred             --------HHHHHHHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhcc
Confidence                    000000000000000      00112345799999999999999999999999943           35689


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 023196          158 KTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       158 RT~~Q~~sh~qky~~r~  174 (286)
                      ||+..+..|+...+.-+
T Consensus       971 rt~~~~~~r~~~l~~~~  987 (1033)
T PLN03142        971 RTPQELARRCDTLIRLI  987 (1033)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999997655544

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.61  E-value=7.8e-05  Score=73.70  Aligned_cols=49  Identities=24%  Similarity=0.316  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      -...||.+|+-+|.+|+..|+-|   +|+.||.+|+.||..||++||.+...
T Consensus        71 ~~~~WtadEEilLLea~~t~G~G---NW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFG---NWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCC---cHHHHHHHHcccchHHHHHHHHHHHh
Confidence            34569999999999999999998   59999999999999999999976543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.60  E-value=5e-05  Score=72.82  Aligned_cols=49  Identities=24%  Similarity=0.497  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      ..|+.+|+-+|++++...|-|+|..||. +|+.|+...|++||-||+..-
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIad-yiGsr~kee~k~HylK~y~es  112 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIAD-YIGSRAKEEIKSHYLKMYDES  112 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHH-HHhhhhhHHHHHHHHHHHhhc
Confidence            4699999999999999999999999996 999999999999999998853

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.51  E-value=0.00034  Score=51.26  Aligned_cols=46  Identities=17%  Similarity=0.380  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchh---HHHhhhCC-CC-CHHHHHHHHHHh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRW---IKVAAMIP-GK-TVLDVIKQYKEL   72 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW---~kIAa~vP-GR-T~~QV~~rYk~L   72 (286)
                      +-.||+||..+|..||..++.+   .|   ..|++.+. .+ |..||+.|+.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g---~~a~pk~I~~~~~~~~lT~~qV~SH~QKy   53 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGP---DWATPKRILELMVVDGLTRDQVASHLQKY   53 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4679999999999999999975   39   99999875 35 999999999864

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.44  E-value=0.00013  Score=74.01  Aligned_cols=42  Identities=29%  Similarity=0.477  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                      +..||++|.-+||+||++||. +|.+||. +|++||..||..|+
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa~-hVg~ks~eqCI~kF  294 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGD-DWNKVAD-HVGTKSQEQCILKF  294 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcc-cHHHHHh-ccCCCCHHHHHHHH
Confidence            358999999999999999999 9999996 99999999999974

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.34  E-value=0.00021  Score=71.35  Aligned_cols=46  Identities=26%  Similarity=0.515  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL   72 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L   72 (286)
                      ....||.+|.-+|.++|.+|+.+    |.+||.+|+.||++||+-||-.|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDd----W~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDD----WDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhh----HHHHHHHhCCCCHHHHHHHHHcC
Confidence            34579999999999999999965    99999999999999999999765

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=97.12  E-value=0.00071  Score=70.74  Aligned_cols=46  Identities=35%  Similarity=0.541  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ..||..|.++|.+||..|.++    +.+|+.+|+||||.||.+.|.....
T Consensus       620 d~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~KtVaqCVeyYYtWKK  665 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSKD----FIFVQKMVKSKTVAQCVEYYYTWKK  665 (907)
T ss_pred             ccccHHHHHHHHHHHHHhccc----HHHHHHHhccccHHHHHHHHHHHHH
Confidence            789999999999999999987    9999999999999999999965444

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.10  E-value=0.00073  Score=68.59  Aligned_cols=46  Identities=26%  Similarity=0.504  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL   72 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L   72 (286)
                      ....||.+|.-+|..+|.+|+.+    |.+||.+|.+||..||+-|+..|
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~dd----W~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDD----WNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhccc----HHHHHhccCCCCHHHHHHHHHhc
Confidence            66889999999999999999976    99999999999999999999765

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=96.85  E-value=0.00071  Score=68.44  Aligned_cols=52  Identities=25%  Similarity=0.482  Sum_probs=47.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      .||+.|+--||+.|-.++.+||.-.|+.|++ .+.-+|+.||+.+|.+|....
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~s-ll~~kt~rqC~~rw~e~ldp~   56 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIAS-LLNRKTARQCKARWEEWLDPA   56 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHH-HHhhcchhHHHHHHHHHhCHH
Confidence            4678999999999999999999999999996 999999999999998887643

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=96.81  E-value=0.0038  Score=64.44  Aligned_cols=46  Identities=22%  Similarity=0.541  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI  172 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~  172 (286)
                      .+.||+||++.|...+.++|. +|..|++  .-+|.|..|+.+|+.|..
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~--~lgr~P~~crd~wr~~~~  429 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGN-DWKEIGK--ALGRMPMDCRDRWRQYVK  429 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcc-cHHHHHH--HHccCcHHHHHHHHHhhc
Confidence            468999999999999999997 9999996  789999999999987754

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.75  E-value=0.016  Score=52.47  Aligned_cols=111  Identities=13%  Similarity=0.121  Sum_probs=73.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC---CCCHHHHHHHHHHhhhhhh--hhccCCCCCCCCCCCcchhhhcc
Q 023196           26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIP---GKTVLDVIKQYKELEEDVS--DIEAGRVPIPGYLSSSFTLELVS  100 (286)
Q Consensus        26 ~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP---GRT~~QV~~rYk~L~~dv~--~IE~G~v~~P~y~~~~f~l~~~~  100 (286)
                      +|++++|-+|++||..-.     .-+.|+.-|+   .-|..++.+||..|+-|-.  .+...                  
T Consensus         1 rW~~~DDl~Li~av~~~~-----~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~------------------   57 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN-----DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVA------------------   57 (199)
T ss_pred             CCCchhhHHHHHHHHHhc-----CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHH------------------
Confidence            599999999999997633     2667776665   4699999999999997621  11000                  


Q ss_pred             cccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCC--Cchhcc-----hhhhcCCCCHHHHHHHHH
Q 023196          101 ESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGK--GDWRNI-----SRNYVISKTPTQVASHAQ  168 (286)
Q Consensus       101 ~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~--g~W~~I-----A~~~V~tRT~~Q~~sh~q  168 (286)
                        +...+....   ..   ......+||.+|+++|.........  ..+.+|     + .|-++||+.+...||+
T Consensus        58 --~m~~l~p~~---~~---~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~-vFh~sRTak~L~~HW~  123 (199)
T PF13325_consen   58 --AMRNLHPEL---IA---AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRS-VFHPSRTAKSLQDHWR  123 (199)
T ss_pred             --HHHhCCcch---hh---cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChh-hhccccCHHHHHHHHH
Confidence              000000000   00   0112369999999999987655433  245555     3 3789999999999998

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.27  E-value=0.0053  Score=46.99  Aligned_cols=54  Identities=19%  Similarity=0.372  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHHHHHH------hC--CCCC--chhHHHhhhCC----CCCHHHHHHHHHHhhhhhhh
Q 023196           25 TSWTKEENKRFESALAI------YS--ESTP--DRWIKVAAMIP----GKTVLDVIKQYKELEEDVSD   78 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~------~~--~~tp--dRW~kIAa~vP----GRT~~QV~~rYk~L~~dv~~   78 (286)
                      ..||.+|...|..++..      +.  ....  .-|..||..|-    .||+.||+.+|+.|......
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            47999999999998876      21  1222  36999999985    59999999999999987654

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=96.26  E-value=0.03  Score=55.04  Aligned_cols=49  Identities=33%  Similarity=0.561  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSG  177 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s~  177 (286)
                      ..||++|=+.|.+||+.||+ ++..|-++-|++|+...|-.+   |+...++.
T Consensus       278 ~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVey---YYlWKkSe  326 (445)
T KOG4329|consen  278 SGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEY---YYLWKKSE  326 (445)
T ss_pred             ccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHH---HHHhhcCc
Confidence            57999999999999999999 999999999999999999886   45555543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.17  E-value=0.0069  Score=58.48  Aligned_cols=47  Identities=15%  Similarity=0.360  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ..|+.+|+-+|.+++...+.+   +|+-||.+|+.|+..+|+.||-+...
T Consensus        64 e~WgadEEllli~~~~TlGlG---NW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLG---NWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCC---cHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            359999999999999999988   59999999999999999999987764

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=96.10  E-value=0.045  Score=54.99  Aligned_cols=50  Identities=6%  Similarity=-0.091  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ...||.+|.-+++.+|++||+ ....|+ -.++..+-.|+++....|-+|+.
T Consensus       369 n~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~m  418 (534)
T KOG1194|consen  369 NRCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQM  418 (534)
T ss_pred             ccccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHHH
Confidence            368999999999999999999 777788 37888999999999989988873

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=95.71  E-value=0.0049  Score=62.73  Aligned_cols=54  Identities=24%  Similarity=0.423  Sum_probs=48.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196          122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s  176 (286)
                      ++++.|+..||.-++.++++||.-+|.+||. .+..||+.||++||..|...+..
T Consensus        18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas-~~~~~~~kq~~~rw~~~lnp~lk   71 (512)
T COG5147          18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVAS-LLISSTGKQSSNRWNNHLNPQLK   71 (512)
T ss_pred             ecCCCCCCcchhHHHHHHhhcccccHHHHHH-Hhcccccccccchhhhhhchhcc
Confidence            3557999999999999999999989999996 77779999999999888887754

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.21  E-value=0.038  Score=42.21  Aligned_cols=50  Identities=20%  Similarity=0.387  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHHH------hCC-----C--chhcchhhhc----CCCCHHHHHHHHHHHHHHHhc
Q 023196          126 PWTEEEHKRFLMGLIK------YGK-----G--DWRNISRNYV----ISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       126 pWT~EEd~lll~gl~k------yG~-----g--~W~~IA~~~V----~tRT~~Q~~sh~qky~~r~~s  176 (286)
                      .||.+|..+||.++..      ++.     +  -|..||. .+    ..||+.||+.+|.+..++...
T Consensus         3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~-~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAE-ELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHH-HHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999887      321     1  6999996 55    379999999999877777654

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.94  E-value=0.042  Score=45.90  Aligned_cols=52  Identities=29%  Similarity=0.510  Sum_probs=41.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCC---Cchhcchh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGK---GDWRNISR-----------NYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~---g~W~~IA~-----------~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      ++..+|+|||+-||..+.+||-   |.|..|-.           -|+.+||+..+..|+.-.+.-+
T Consensus        48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            3468999999999999999998   99999964           3569999999999997555443

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.22  E-value=0.11  Score=43.41  Aligned_cols=54  Identities=17%  Similarity=0.319  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC------------CCCHHHHHHHHHHhhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP------------GKTVLDVIKQYKELEEDV   76 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP------------GRT~~QV~~rYk~L~~dv   76 (286)
                      .+..+|.|||.-|...+..||-++++.|++|-+.|-            .||+.++.+|...|+.-+
T Consensus        48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            567899999999999999999988999999988763            799999999999887644

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.73  E-value=0.12  Score=38.96  Aligned_cols=54  Identities=13%  Similarity=0.308  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---C----------CCchhHHHhhhCC-----CCCHHHHHHHHHHhhhhhh
Q 023196           24 STSWTKEENKRFESALAIYSE---S----------TPDRWIKVAAMIP-----GKTVLDVIKQYKELEEDVS   77 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~---~----------tpdRW~kIAa~vP-----GRT~~QV~~rYk~L~~dv~   77 (286)
                      ...||.+|.+.|...|..|..   +          -..-|..||..|.     .||..||++.|.++...+.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K   73 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK   73 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            467999999999999998731   1          1246999999883     4999999999999887553

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=93.70  E-value=0.1  Score=51.67  Aligned_cols=45  Identities=18%  Similarity=0.495  Sum_probs=41.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHH
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKE   71 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~   71 (286)
                      ..-+||.+|...|-+||.+++.+    +..|+.++|.|..+||.-.|++
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWGTD----FSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCchhHHHHHHHHHH
Confidence            34679999999999999999977    9999999999999999999975

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=93.68  E-value=0.23  Score=52.70  Aligned_cols=41  Identities=34%  Similarity=0.393  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                      .-||..|-++|-.||-.|-+ ++..|++ .|++||..||-.+|
T Consensus       620 d~WTp~E~~lF~kA~y~~~K-DF~~v~k-m~~~KtVaqCVeyY  660 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSK-DFIFVQK-MVKSKTVAQCVEYY  660 (907)
T ss_pred             ccccHHHHHHHHHHHHHhcc-cHHHHHH-HhccccHHHHHHHH
Confidence            57999999999999999999 9999997 99999999999985

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=93.18  E-value=0.13  Score=38.66  Aligned_cols=50  Identities=16%  Similarity=0.184  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC--------CCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYG--------KGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG--------~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      .++|+|||+.|+.-|+.+.        +.-|+.+++..+..+|-...++||.|.++..
T Consensus         3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            5899999999999997653        2279999975555888888999986665543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=92.25  E-value=0.2  Score=49.69  Aligned_cols=46  Identities=22%  Similarity=0.464  Sum_probs=41.3

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196          120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus       120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                      .+++..+||.+|-.+|-.||..+|. ++..||. ++|+|...||+-.|
T Consensus       361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~-lfP~R~RkqIKaKf  406 (507)
T COG5118         361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISS-LFPNRERKQIKAKF  406 (507)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHH-hcCchhHHHHHHHH
Confidence            3455679999999999999999999 9999995 99999999999854

>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]

Probab=91.48  E-value=0.13  Score=57.83  Aligned_cols=146  Identities=25%  Similarity=0.337  Sum_probs=81.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHH---------HHhhhhhh-hhcc---CCCCC---
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQY---------KELEEDVS-DIEA---GRVPI---   86 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rY---------k~L~~dv~-~IE~---G~v~~---   86 (286)
                      ....|+.+|-+.|+.-++.|.+.    ...||.+|..||+.||.--|         +.++.-.. ....   +..+.   
T Consensus       224 ~~n~Ws~~Ek~~fk~rf~~H~kn----f~~~as~~erkSv~d~vlfyy~nkkte~yk~~~~r~~~r~~s~~~~~~~~~~~  299 (1672)
T KOG1878|consen  224 RMNEWSPEEKELFKSRFAQHVKN----FGLIASFFERKSVSDCVLFYYLNKKTENYKKLVRRPKKRSQSYKVGAFPSPEE  299 (1672)
T ss_pred             HhhhccccccccccchhhhcCcc----hhhhhhhhcccchhhceeeeeecccchhHHhhhccccccchhccccccCChHh
Confidence            34689999999999988888764    88999999999999997544         33332000 0000   00111   


Q ss_pred             --------CCCCCC--cchhhhcccccchhhh---hhhcccccccccCccCCCCCHH------HHHHHHHHHHHhCCCch
Q 023196           87 --------PGYLSS--SFTLELVSESDYDANR---KRTLVAKSSDHERKKGVPWTEE------EHKRFLMGLIKYGKGDW  147 (286)
Q Consensus        87 --------P~y~~~--~f~l~~~~~~~~dg~~---kr~~~~r~~~qerkKg~pWT~E------Ed~lll~gl~kyG~g~W  147 (286)
                              |...++  +|...  ....++++.   +..........+.-......-|      |-+.--.|+..+|+ +|
T Consensus       300 Ele~~ee~~~ledpkes~~~~--~~~d~~~~~~~~resv~~e~~~~Ple~~ei~a~e~de~see~ev~k~Glveh~R-~~  376 (1672)
T KOG1878|consen  300 ELEKEEEKPELEDPKESFPKN--KLIDYFGERTVERESVNGEEPFMPLEPYEIFAIEPDELSEEMEVAKSGLVEHGR-EW  376 (1672)
T ss_pred             hhhhhhhcccccCcccccccc--ccccccccccccccccccCCCCCCCCCccccccCccccchhhhhhhccchhhhh-hH
Confidence                    000000  11110  000111111   1111100000000001222223      33356667778888 99


Q ss_pred             hcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196          148 RNISRNYVISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       148 ~~IA~~~V~tRT~~Q~~sh~qky~~r~~s  176 (286)
                      .+|+. .|.++|..||++.+-||-.|++.
T Consensus       377 aai~p-~vvt~tes~c~na~a~~~~r~N~  404 (1672)
T KOG1878|consen  377 AAILP-KVVTKTESQCKNAYAKYKNRHNL  404 (1672)
T ss_pred             HHhcC-ccceecccchhhHHHhhhhhhcc
Confidence            99997 99999999999998899998854

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=91.41  E-value=0.16  Score=51.49  Aligned_cols=47  Identities=28%  Similarity=0.497  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r  173 (286)
                      ...|+.-|-.+|.++|+|||+ ++..|-++|+|-++-..|-.+|  ||-+
T Consensus       285 mEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyY--YmwK  331 (693)
T KOG3554|consen  285 MEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYY--YMWK  331 (693)
T ss_pred             hhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHH--HHHh
Confidence            457999999999999999999 9999999999999999998876  4443

>PLN03162 golden-2 like transcription factor; Provisional

Probab=90.79  E-value=0.57  Score=46.42  Aligned_cols=56  Identities=32%  Similarity=0.363  Sum_probs=42.5

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhCCC--chhcchh-hhcCCCCHHHHHHHHHHHHHHHh
Q 023196          120 ERKKGVPWTEEEHKRFLMGLIKYGKG--DWRNISR-NYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       120 erkKg~pWT~EEd~lll~gl~kyG~g--~W~~IA~-~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .+|....||.|=|++|+++|.+.|..  .=+.|-+ =-|++=|..+|+||-|||...++
T Consensus       233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            34455789999999999999999931  2333432 02578899999999999988764

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=90.16  E-value=0.4  Score=47.48  Aligned_cols=55  Identities=31%  Similarity=0.437  Sum_probs=43.6

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhCC---------------Cchhcchhhhc-----CCCCHHHHHHHHHHHHHHHhc
Q 023196          121 RKKGVPWTEEEHKRFLMGLIKYGK---------------GDWRNISRNYV-----ISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       121 rkKg~pWT~EEd~lll~gl~kyG~---------------g~W~~IA~~~V-----~tRT~~Q~~sh~qky~~r~~s  176 (286)
                      +..-+-|+++=++.|.+||..|.+               |+=..||+ |+     .+||.+||.||-|-.-+|...
T Consensus        73 ~daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~r  147 (455)
T KOG3841|consen   73 RDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKLR  147 (455)
T ss_pred             cccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            334468999999999999998753               45677887 77     678899999999877777643

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=90.13  E-value=0.62  Score=35.92  Aligned_cols=52  Identities=21%  Similarity=0.340  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHHHHHHHh------C-CC--CCchhHHHhhhCC-----CCCHHHHHHHHHHhhhhhh
Q 023196           26 SWTKEENKRFESALAIY------S-ES--TPDRWIKVAAMIP-----GKTVLDVIKQYKELEEDVS   77 (286)
Q Consensus        26 ~WT~EEdk~Le~Ala~~------~-~~--tpdRW~kIAa~vP-----GRT~~QV~~rYk~L~~dv~   77 (286)
                      .||.++++.|..++...      + .+  .+.-|..|++.|-     ..|..||..||..|..+..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~   66 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR   66 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence            59999999999887543      1 11  1456999999885     3688999999999988654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=89.96  E-value=0.59  Score=35.07  Aligned_cols=50  Identities=16%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHh-----CC-----------Cchhcchhhhc-----CCCCHHHHHHHHHHHHHHHh
Q 023196          125 VPWTEEEHKRFLMGLIKY-----GK-----------GDWRNISRNYV-----ISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~ky-----G~-----------g~W~~IA~~~V-----~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ..||.+|-..|++.|.+|     |+           .-|..|+. .|     +.||..|++..|.++-...+
T Consensus         3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~-~lN~~~~~~Rs~~~lkkkW~nlk~~~K   73 (78)
T PF13873_consen    3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAE-ELNALGPGKRSWKQLKKKWKNLKSKAK   73 (78)
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            379999999999999987     31           27999986 33     47999999999988876654

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=89.21  E-value=0.57  Score=46.29  Aligned_cols=47  Identities=21%  Similarity=0.513  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHH-hhhCCCCCHHHHHHHHHHhhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKV-AAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kI-Aa~vPGRT~~QV~~rYk~L~~   74 (286)
                      -..|+++|=+.|+..|..|+++    +..| |..|+.|++.+|++.|.....
T Consensus       277 l~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYlWKk  324 (445)
T KOG4329|consen  277 LSGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYLWKK  324 (445)
T ss_pred             cccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHHhhc
Confidence            3679999999999999999997    6666 567899999999999876543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=89.02  E-value=0.85  Score=35.17  Aligned_cols=48  Identities=27%  Similarity=0.514  Sum_probs=33.6

Q ss_pred             CCCHHHHHHHHHHHHHh---C----CC-----chhcchhhhc----CCCCHHHHHHHHHHHHHHH
Q 023196          126 PWTEEEHKRFLMGLIKY---G----KG-----DWRNISRNYV----ISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       126 pWT~EEd~lll~gl~ky---G----~g-----~W~~IA~~~V----~tRT~~Q~~sh~qky~~r~  174 (286)
                      .||+++++.||+++...   |    .+     .|..|+..|.    ...|..||++|+. .+++.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~-~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK-TLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH-HHHHH
Confidence            49999999999998653   2    11     5888876332    3467889999985 44443

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=87.65  E-value=1.1  Score=46.81  Aligned_cols=52  Identities=27%  Similarity=0.379  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHH----------hhhCCCCCHHHHHHHHHHhhhhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKV----------AAMIPGKTVLDVIKQYKELEEDVSD   78 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kI----------Aa~vPGRT~~QV~~rYk~L~~dv~~   78 (286)
                      ..+.||..|...|-.||.+|+++    +++|          -..+--||..||+.+|..++..+..
T Consensus        87 ~ktaWt~~E~~~Ffdal~~~GKd----Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k  148 (782)
T KOG4468|consen   87 AKTAWTHQEEESFFDALRQVGKD----FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNK  148 (782)
T ss_pred             cccccchhhHHHHHHHHHHhccc----HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHh
Confidence            45689999999999999999997    8887          3334469999999999988775543

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=87.59  E-value=0.75  Score=48.02  Aligned_cols=50  Identities=30%  Similarity=0.428  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcc---------hhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNI---------SRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~I---------A~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ..||-.|...|..||+.+|+ ++.+|         |..-+..+|..||+-||-+..+++.
T Consensus        89 taWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~  147 (782)
T KOG4468|consen   89 TAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN  147 (782)
T ss_pred             cccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence            58999999999999999999 99998         2235778899999999877777764

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=87.00  E-value=0.78  Score=40.44  Aligned_cols=49  Identities=14%  Similarity=0.206  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--C-CchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           25 TSWTKEENKRFESALAIYSES--T-PDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~--t-pdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ..||.|||.+|-..|-.|=..  | -.-++.|+..| +||..-|-=||+..+.
T Consensus         5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            469999999999998887432  2 13478999998 8999999999988765

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=86.45  E-value=0.78  Score=40.78  Aligned_cols=50  Identities=10%  Similarity=0.177  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCC---chhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           24 STSWTKEENKRFESALAIYSESTP---DRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tp---dRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ...||.|||.+|...|-.|.....   +-.+.++..| +||...|-.||...+.
T Consensus         5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            356999999999999888865432   3466777777 7999999999965544

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=83.64  E-value=1.1  Score=39.61  Aligned_cols=48  Identities=19%  Similarity=0.375  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-C-----chhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGK-G-----DWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~-g-----~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      ..||+|||.+|-+.|-+|=+ |     ....+++  --+||+..|.-||..|.+++
T Consensus         5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~--~L~RTsAACGFRWNs~VRkq   58 (161)
T TIGR02894         5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR--ALNRTAAACGFRWNAYVRKQ   58 (161)
T ss_pred             cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHcccHHHhcchHHHHHHHH
Confidence            47999999999999888732 2     3444443  46899999999999999976

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=81.12  E-value=2  Score=47.70  Aligned_cols=48  Identities=25%  Similarity=0.497  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       126 pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      .||.-+=..|+.|..+||+.+-..||. .|.++|+.+|+.+++-|..|.
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~-~~~~k~~~ev~~y~~~f~~~~  873 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIAS-EMEGKTEEEVERYAKVFWERY  873 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHH-HhcCCCHHHHHHHHHHHHHhh
Confidence            599999999999999999999999996 999999999998776666553

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=80.35  E-value=1.5  Score=43.68  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh-----CCC-CCHHHHHHHHHHhhhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAM-----IPG-KTVLDVIKQYKELEEDV   76 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~-----vPG-RT~~QV~~rYk~L~~dv   76 (286)
                      ..||.||..-|=.+...|+.    ||..||..     ++. ||++|..+||..+...+
T Consensus       131 n~WskeETD~LF~lck~fDL----Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l  184 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDL----RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKL  184 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCe----eEEEEeeccchhhccccccHHHHHHHHHHHHHHH
Confidence            45999999999999999986    58888876     665 99999999999877654

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=80.15  E-value=2.4  Score=40.69  Aligned_cols=52  Identities=17%  Similarity=0.349  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHH----hCCC-----chhcchhhhc---CCCCHHHHHHHHHHHHHHHhc
Q 023196          125 VPWTEEEHKRFLMGLIK----YGKG-----DWRNISRNYV---ISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~k----yG~g-----~W~~IA~~~V---~tRT~~Q~~sh~qky~~r~~s  176 (286)
                      ..|+.+|=..||++..+    |..+     -|..||+.+-   --||+.||+..|.+..++.+.
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~  118 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK  118 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            68999999999998765    3334     4999997232   349999999999877776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
2cjj_A	93	Crystal Structure Of The Myb Domain Of The Rad Tran		4e-13
2m2e_A	73	Solution Nmr Structure Of The Sant Domain Of Human		3e-08
4eef_G	74	Crystal Structure Of The Designed Inhibitor Protein		3e-04
2cu7_A	72	Solution Structure Of The Sant Domain Of Human Kiaa		4e-04

>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus Length = 93

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPI 86
          W+ +ENK FE ALA+Y + TPDRW  VA  + G+T  +V K Y+ L ED+  IE+G+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70
Query: 87 PGYLSSSFTLE 97
          P Y ++   ++
Sbjct: 71 PNYRTTGGNMK 81

>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2, Northeast Structural Genomics Consortium Target Hr8254a Length = 73

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGR 83
          T WT EE K  E AL  Y  +TP+RW K+A  +PG+T  D +K+YKEL E V   +A +
Sbjct: 4  TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQ 62

>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein F-Hb80.4 In Complex With The 1918 Influenza Virus Hemagglutinin. Length = 74

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE 73
          W   EN  FE AL+  ++ TPDRW KVA  + G+T  +V K Y ELE
Sbjct: 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY-ELE 68

>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915 Protein Length = 72

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRP 184
           V WT EE + F  GL K+G+  W  IS+  + S+T  QV S+A++YF  ++  G DK  P
Sbjct: 10  VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETP 67
Query: 185 S 185
           +
Sbjct: 68  N 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
2cjj_A	93	Radialis; plant development, DNA-binding protein,	5e-34
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-26
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-05
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	3e-22
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	5e-04
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	8e-21
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	8e-05
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	4e-20
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	2e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-14
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-14
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	2e-12
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-12
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-09
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-09
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	2e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	5e-07
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	5e-06
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	3e-05
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	6e-06
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	9e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	4e-05
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	8e-05
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	9e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-05
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-04
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	1e-04
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-04
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-04

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score =  118 bits (297), Expect = 5e-34
 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 19  QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSD 78
                   W+ +ENK FE ALA+Y + TPDRW  VA  + G+T  +V K Y+ L ED+  
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 79  IEAGRVPIPGYLSSSFTLELVSESDYDANRKRTL 112
           IE+G+VP P Y ++            D  R R L
Sbjct: 63  IESGKVPFPNYRTTGGN------MKTDEKRFRNL 90

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 97.6 bits (243), Expect = 2e-26
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 116 SSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL 175
            S       V WT EE + F  GL K+G+  W  IS+  + S+T  QV S+A++YF  ++
Sbjct: 1   GSSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKV 58

Query: 176 SGGKDKRRPS 185
             G DK  P+
Sbjct: 59  KCGLDKETPN 68

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 19 QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDV 65
            S  S  WT EE + FE  LA +      RW K++ +I  +TVL V
Sbjct: 4  GSSGYSVKWTIEEKELFEQGLAKF----GRRWTKISKLIGSRTVLQV 46

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 86.9 bits (215), Expect = 3e-22
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 10 MSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQY 69
              S+      S    W   EN  FE AL+  ++ TPDRW KVA  + G+T  +V K Y
Sbjct: 7  DDKGSHMASTRGS-GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65

Query: 70 KELEEDV 76
          +      
Sbjct: 66 ELEHHHH 72

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 116 SSDHERKKGVPWTEEEHKRFLMGLIKYGKGD---WRNISRNYVISKTPTQVASH 166
                R  G PW   E+  F + L    K     W+ +++  V  +TP +V  H
Sbjct: 12  HMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY-VKGRTPEEVKKH 64

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 83.0 bits (205), Expect = 8e-21
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 19 QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVS 77
          +  S    WT+ + K  E AL  Y   + D W K+A  +P K+  D I +YK L    S
Sbjct: 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 39.1 bits (91), Expect = 8e-05
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 114 AKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGD---WRNISRNYVISKTPTQVASHAQKY 170
           +   +  R    PWT+ + K   + L +Y +G    W  I+R  V SK+     +   K 
Sbjct: 8   SLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARY-KL 65

Query: 171 FIRQLSGG 178
            +   S G
Sbjct: 66  LVSGPSSG 73

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 81.2 bits (200), Expect = 4e-20
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 120 ERKKGVPWTEEEHKRFLMGLIKYGKGD-----WRNISRNYVISKTPTQVASHAQKYFIRQ 174
                  WT EE K+    LIKY   +     W+ I+   + ++T  QVAS  QKYFI+ 
Sbjct: 4   GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE-LGNRTAKQVASQVQKYFIKL 62

Query: 175 LSGGKDKRRPS 185
              G     PS
Sbjct: 63  TKAGIPVSGPS 73

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 19 QESSRSTSWTKEENKRFESALAIY--SESTPDRWIKVAAMIPGKTVLDVIKQYKE 71
            SS +  WT EE K+ E  L  Y   E    RW K+A  +  +T   V  Q ++
Sbjct: 3  SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 66.2 bits (162), Expect = 1e-14
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSG 177
            WT +E    L  ++  G G+W++++ N + +KT  +   H  KYF    SG
Sbjct: 10  SWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGPSSG 60

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 65.2 bits (159), Expect = 2e-14
 Identities = 11/57 (19%), Positives = 20/57 (35%)

Query: 116 SSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172
            S         W  +E    +      G G+W +I+     ++T  +   H  K +I
Sbjct: 1   GSSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 21 SSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIE 80
          SS +  WT+E+  +   ++  +   TP RW K+A  + G++V DV  + K+L++ V+   
Sbjct: 5  SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCS- 62

Query: 81 AGRVPIP 87
           G V  P
Sbjct: 63 PGMVSGP 69

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 115 KSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174
            SS  E      WTEEE      GL+++G+ +W  I+R  V SKT +Q  +    Y  RQ
Sbjct: 7   HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQ 64

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 18 LQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQY 69
           +E+     WT+EE    +  L  +       W  +A M+  KTV      Y
Sbjct: 10 GRENLYFQGWTEEEMGTAKKGLLEH----GRNWSAIARMVGSKTVSQCKNFY 57

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172
               G  WTE+E    L  L  Y   DW  +S  +V S+T  +   H  +  I
Sbjct: 14  GASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRLPI 64

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 7  ASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVI 66
           S  S+ +    + +S    WT++E      AL +Y     D W KV+  +  +T  + I
Sbjct: 1  GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMY----KDDWNKVSEHVGSRTQDECI 56

Query: 67 KQYKEL 72
            +  L
Sbjct: 57 LHFLRL 62

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 115 KSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY-VISKTPTQ 162
           + S     K   WT EE +    G+ KYG+G+W  IS+NY  +++T   
Sbjct: 2   EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 50

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 115 KSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174
           +  +  +K    WT EE    +  + KYG+ D++ IS   + +K+  QV +    Y  R 
Sbjct: 124 RLPEVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRF 181

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 115 KSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYF 171
              D +R+   P++  E +  +  + K G G WR++          +T   +     K  
Sbjct: 4   MLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDK-WKTL 62

Query: 172 IRQLSGGKDKRRPS 185
           +        +RR  
Sbjct: 63  VHTAKISPQQRRGE 76

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 116 SSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISK-TPTQ 162
              H  +K   W  EE K    G+ KYG+G+W  I  +Y  +  T   
Sbjct: 2   PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 49

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 19 QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQY 69
           +      WT  E + F+     +    P  +  +A+ +  K+V D +  Y
Sbjct: 7  GDRQFMNVWTDHEKEIFKDKFIQH----PKNFGLIASYLERKSVPDCVLYY 53

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 115 KSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASH 166
             S  +R+    WT+ E + F    I++ K ++  I+  Y+  K+      +
Sbjct: 3   SGSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLY 52

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 43.0 bits (101), Expect = 6e-06
 Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 17 FLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQY 69
            ++      W+++E + F      +    P  +  +A+ +  KTV + +  Y
Sbjct: 36 VYKDRQVMNMWSEQEKETFREKFMQH----PKNFGLIASFLERKTVAECVLYY 84

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 42.6 bits (100), Expect = 9e-06
 Identities = 9/48 (18%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 119 HERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASH 166
            +R+    W+E+E + F    +++ K ++  I+ +++  KT  +   +
Sbjct: 38  KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLY 83

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNY 154
            WT EE +    G+ KYG+G+W  IS+NY
Sbjct: 4   KWTVEESEWVKAGVQKYGEGNWAAISKNY 32

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISK-TPTQ 162
           K+   W  EE K    G+ KYG+G+W  I  +Y  +  T   
Sbjct: 1   KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 41

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 40.5 bits (94), Expect = 9e-05
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 115 KSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYF 171
           +    +R+   P+T  E +  +  +   G G WR++       V  +T   +    +   
Sbjct: 22  RPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81

Query: 172 IRQLSGGKDKRRPSI 186
                  + +R   +
Sbjct: 82  HTASIAPQQRRGAPV 96

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 29 KEENKRFESALAIYS-ESTPDRWIKVAAM 56
          K+  K+ +++L +Y+ +S P   IK A M
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK-ATM 46

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISK---TPTQVASHAQKYFIR 173
           +K  V WT E H +FL  +   G           +++    T   VASH QK+ + 
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQV 163
            WTE+E KRF+ GL +YGK ++  I +  + +K   ++
Sbjct: 11  CWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGEL 47

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 115 KSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY 154
           +S   +R+   P++  E +  +  +   G G WR++    
Sbjct: 8   RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRA 47

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 48/129 (37%)

Query: 25  TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRV 84
           T WT+EE+++ +  +        D W  +A  +P +T +    +++              
Sbjct: 7   TRWTREEDEKLKKLVEQNG---TDDWKVIANYLPNRTDVQCQHRWQ-------------- 49

Query: 85  PIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGK 144
                                         K  + E  KG PWT+EE +R +  + KYG 
Sbjct: 50  ------------------------------KVLNPELIKG-PWTKEEDQRVIKLVQKYGP 78

Query: 145 GDWRNISRN 153
             W  I+++
Sbjct: 79  KRWSVIAKH 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.93
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.93
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.92
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.92
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.91
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.88
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.88
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.81
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.8
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.72
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.66
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.64
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.63
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.59
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.54
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.54
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.53
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	99.52
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.5
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.48
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.48
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.47
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.47
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.45
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.44
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.41
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.39
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.38
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.37
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.36
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.35
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.34
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.01
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.32
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.3
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.29
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.28
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	99.28
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.26
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.26
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.25
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.25
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.24
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.24
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.21
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.21
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.21
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.21
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.19
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.18
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.15
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.15
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.15
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	99.14
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.13
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.11
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.08
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.08
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.07
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	99.01
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.98
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.95
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.93
2crg_A	70	Metastasis associated protein MTA3; transcription	98.92
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.85
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.3
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.79
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.78
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.73
2crg_A	70	Metastasis associated protein MTA3; transcription	98.64
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.59
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	98.57
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.52
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.5
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	98.46
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.46
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.44
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	98.0
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.85
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.81
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.81
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.67
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.52
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.52
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.35
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.44
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.39
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	97.19
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.7
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.68
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.6
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.36
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.86
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	95.48
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.82
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	90.16

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.93  E-value=9.8e-26  Score=180.94  Aligned_cols=102  Identities=16%  Similarity=0.426  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccccc
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDY  104 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~~~  104 (286)
                      +.||+|||++|..+|..|+..   +|..||..|||||..||++||...++            |..               
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~i---------------   51 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYIN------------PAL---------------   51 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSS------------SCC---------------
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHc------------ccc---------------
Confidence            679999999999999999964   59999999999999999999998764            211               


Q ss_pred             hhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196          105 DANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       105 dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s  176 (286)
                                        +.++||+|||.+|+.++.+||. +|..||+ +|++||+.||++||..++++...
T Consensus        52 ------------------~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           52 ------------------RTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             ------------------TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             ------------------cccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHhhHHH
Confidence                              2369999999999999999998 9999996 99999999999999988888654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.93  E-value=9.6e-26  Score=179.67  Aligned_cols=101  Identities=24%  Similarity=0.468  Sum_probs=89.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES  102 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~  102 (286)
                      ..+.||+|||++|..+|..|+..   +|..||++|||||..||++||...++            |.              
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~--------------   53 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PE--------------   53 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTC------------CC--------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccC------------Cc--------------
Confidence            45789999999999999999964   59999999999999999999998654            21              


Q ss_pred             cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196          103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r  173 (286)
                                         .+.++||+|||.+|+.++.+||. +|..||+ +|||||+.||++||..++++
T Consensus        54 -------------------~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           54 -------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             -------------------CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHTC-
T ss_pred             -------------------ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHHHhc
Confidence                               12369999999999999999998 9999996 99999999999999877654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.92  E-value=4.7e-25  Score=181.87  Aligned_cols=104  Identities=20%  Similarity=0.403  Sum_probs=92.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES  102 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~  102 (286)
                      ..+.||+|||++|..+|+.|+.    +|..||+.|||||..||++||...++            |.              
T Consensus        10 kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~--------------   59 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA------------PS--------------   59 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS------------TT--------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc------------cc--------------
Confidence            6689999999999999999985    49999999999999999999998764            21              


Q ss_pred             cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 023196          103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSG  177 (286)
Q Consensus       103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s~  177 (286)
                                        . +.++||+|||++|++++++||. +|..||+ +|+|||+.||++||..+++++...
T Consensus        60 ------------------~-~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~~k~~~p  113 (126)
T 3osg_A           60 ------------------I-SHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRWVTISNKLGIP  113 (126)
T ss_dssp             ------------------S-CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred             ------------------c-ccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHhcCCC
Confidence                              1 2359999999999999999998 9999996 999999999999999888887543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.92  E-value=8.8e-25  Score=181.16  Aligned_cols=103  Identities=15%  Similarity=0.377  Sum_probs=91.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhccccc
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESD  103 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~~  103 (286)
                      .+.||+|||++|..+|..|+.+   +|..||..|||||..||++||...++            |..              
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~~--------------   52 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNHLD------------PAV--------------   52 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHHTS------------TTC--------------
T ss_pred             CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhccC------------ccc--------------
Confidence            4789999999999999999854   59999999999999999999998765            211              


Q ss_pred             chhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196          104 YDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       104 ~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s  176 (286)
                                         +.++||+|||.+|++++.+||. +|..||+ +|+|||+.||++||..++.+..+
T Consensus        53 -------------------~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~~~  104 (131)
T 3zqc_A           53 -------------------VKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSISKRIS  104 (131)
T ss_dssp             -------------------CCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTTGGGCC
T ss_pred             -------------------cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHhh
Confidence                               2359999999999999999998 9999996 99999999999999988876643

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.91  E-value=1e-24  Score=179.69  Aligned_cols=109  Identities=23%  Similarity=0.461  Sum_probs=90.1

Q ss_pred             CCccc--cCCCCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCC
Q 023196           14 SNWFL--QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLS   91 (286)
Q Consensus        14 ~~~~~--~~~~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~   91 (286)
                      ..|..  ......+.||+|||++|..+|..|+.+   +|..||..|||||..||++||..+++            |.   
T Consensus        15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~---   76 (128)
T 1h8a_C           15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLN------------PE---   76 (128)
T ss_dssp             -------CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTC------------SS---
T ss_pred             HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhcc------------cc---
Confidence            45652  333367899999999999999999964   59999999999999999999998654            11   


Q ss_pred             CcchhhhcccccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196           92 SSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus        92 ~~f~l~~~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                                                    .+.++||+|||++|++++++||. +|..||+ +|||||+.||++||..++
T Consensus        77 ------------------------------~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r~~~~~  124 (128)
T 1h8a_C           77 ------------------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNHWNSTM  124 (128)
T ss_dssp             ------------------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHHHHTTT
T ss_pred             ------------------------------cccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence                                          12369999999999999999998 9999996 999999999999997654


Q ss_pred             H
Q 023196          172 I  172 (286)
Q Consensus       172 ~  172 (286)
                      +
T Consensus       125 ~  125 (128)
T 1h8a_C          125 R  125 (128)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.88  E-value=8.5e-23  Score=173.79  Aligned_cols=99  Identities=23%  Similarity=0.469  Sum_probs=88.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES  102 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~  102 (286)
                      ..+.||.|||.+|..+|..|+..   +|..||.+|||||..||++||..++.            |.              
T Consensus        57 ~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~--------------  107 (159)
T 1h89_C           57 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PE--------------  107 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTC------------TT--------------
T ss_pred             CCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhC------------cc--------------
Confidence            67899999999999999999853   69999999999999999999988653            11              


Q ss_pred             cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                                         .+.++||+|||.+|++++++||. +|..||+ +|||||+.||++||..++
T Consensus       108 -------------------~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~~~~~  155 (159)
T 1h89_C          108 -------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM  155 (159)
T ss_dssp             -------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred             -------------------ccccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence                               12369999999999999999998 9999997 999999999999997554

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.88  E-value=2.3e-23  Score=177.33  Aligned_cols=100  Identities=22%  Similarity=0.476  Sum_probs=53.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES  102 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~  102 (286)
                      ..+.||+|||++|.++|..|+.+   +|..||+.|||||..||++||..++.            |.              
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~--------------   55 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN------------PE--------------   55 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTC------------TT--------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccC------------CC--------------
Confidence            45789999999999999999854   69999999999999999999987654            11              


Q ss_pred             cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                                         .+.++||+|||.+|+.++.+||.++|..||. +|++||+.||++||.+|+
T Consensus        56 -------------------~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           56 -------------------LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL  104 (159)
T ss_dssp             -------------------CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHTT
T ss_pred             -------------------cCCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence                               1236999999999999999999878999996 999999999999998875

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.81  E-value=4.9e-20  Score=139.48  Aligned_cols=65  Identities=29%  Similarity=0.581  Sum_probs=61.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCC
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGY   89 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y   89 (286)
                      ....||.|||++|++||++||.++|+||++||++| |||+.||++||+.|++|+ .||+|+||+|+|
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~   71 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS   71 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence            55789999999999999999999999999999998 999999999999999996 689999999988

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.80  E-value=8.1e-20  Score=144.63  Aligned_cols=68  Identities=47%  Similarity=0.864  Sum_probs=61.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCC
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYL   90 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~   90 (286)
                      ....||.|||++|++||++|+.++++||.+||++|||||+.||++||+.|++|+..||+|.+|+|.|.
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~   74 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR   74 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999995

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.72  E-value=8.1e-18  Score=126.33  Aligned_cols=64  Identities=39%  Similarity=0.647  Sum_probs=59.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHD  188 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s~~k~krr~sihd  188 (286)
                      +.++||+|||++|+++|++||. +|..||+ +|++||+.||++||++|+++....+.++++++||+
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s   71 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT   71 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence            4469999999999999999999 9999997 99999999999999999999987788888999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.66  E-value=5.5e-17  Score=133.43  Aligned_cols=73  Identities=22%  Similarity=0.469  Sum_probs=45.0

Q ss_pred             HhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccccchhhhhhhcccccccccCccCCCCCHHHH
Q 023196           53 VAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEH  132 (286)
Q Consensus        53 IAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd  132 (286)
                      ||+.|||||..||++||...++            |..                                 +.++||+|||
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~------------p~~---------------------------------~k~~Wt~eED   35 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLN------------PEL---------------------------------NKGPWTKEED   35 (128)
T ss_dssp             ---------------------C------------TTC---------------------------------CCSCCCHHHH
T ss_pred             CccccCCCCHHHHHHHHHHhhC------------CCC---------------------------------CCCCCCHHHH
Confidence            7999999999999999988664            211                                 2369999999


Q ss_pred             HHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          133 KRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       133 ~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      ++|+++|++||.++|..||. +|++||+.||+.||.+|+
T Consensus        36 ~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           36 QRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL   73 (128)
T ss_dssp             HHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence            99999999999878999996 999999999999998775

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.64  E-value=2.2e-16  Score=119.88  Aligned_cols=53  Identities=21%  Similarity=0.440  Sum_probs=49.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED   75 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d   75 (286)
                      ....||.||+++|++||+.||.++|+||++||++|||||+.||++||..|+.+
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            34679999999999999999999999999999999999999999999998653

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.63  E-value=2.6e-16  Score=119.36  Aligned_cols=55  Identities=35%  Similarity=0.566  Sum_probs=52.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVS   77 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~   77 (286)
                      ....||.|||++|+.||++|+.++++||.+||++|||||..||++||..|++|+.
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~   71 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS   71 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence            5678999999999999999999999999999999999999999999999998863

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.59  E-value=1.6e-16  Score=120.27  Aligned_cols=48  Identities=42%  Similarity=0.706  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHH
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYK   70 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk   70 (286)
                      .+..||.||+|+||+||++||+++|+||++||++|||||+.||++||.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999996

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.54  E-value=7.8e-15  Score=103.07  Aligned_cols=47  Identities=28%  Similarity=0.485  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI  172 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~  172 (286)
                      ++||+|||++|+++|++||.++|..||+ +|++||+.||+.||++|+.
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            4 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence            6999999999999999999999999996 9999999999999998864

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.54  E-value=3.6e-15  Score=108.26  Aligned_cols=49  Identities=27%  Similarity=0.596  Sum_probs=45.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r  173 (286)
                      ..+||+|||++|+++|++||.++|..||+ +|++||+.||+.||++|+..
T Consensus         8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHccC
Confidence            36999999999999999999779999996 99999999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=5.5e-15  Score=111.32  Aligned_cols=51  Identities=41%  Similarity=0.614  Sum_probs=47.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          124 GVPWTEEEHKRFLMGLIKYGK-----GDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~-----g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ..+||+|||++|+++|++||.     ++|..||+ +|++||+.||++||++|+.++.
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Confidence            369999999999999999995     59999996 9999999999999999998865

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.53  E-value=6.9e-15  Score=106.23  Aligned_cols=47  Identities=26%  Similarity=0.506  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC-CCCHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQVASHAQKYFI  172 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~-tRT~~Q~~sh~qky~~  172 (286)
                      .+||+|||++|+++|++||.++|..||+ +|+ +||+.||+.||++||.
T Consensus        10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A           10 ENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence            5899999999999999999779999996 999 9999999999999974

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=99.52  E-value=3.6e-15  Score=147.03  Aligned_cols=51  Identities=31%  Similarity=0.425  Sum_probs=46.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      +...+||+||+.+|++||.+||+ +|..||+ +|++||..||++||++|.+|+
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHh
Confidence            34679999999999999999999 9999996 999999999999999886665

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.50  E-value=1.4e-14  Score=101.92  Aligned_cols=46  Identities=26%  Similarity=0.506  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      ++||+|||++|+++|.+||.++|..||+ +|++||+.||+.||++|+
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            6999999999999999999878999996 999999999999999875

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=1.4e-14  Score=104.63  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=45.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r  173 (286)
                      +.++||+|||++|+++|.+||.++|..||+ +|++||+.||+.||++|+..
T Consensus         7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~p   56 (60)
T 2d9a_A            7 GKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLSG   56 (60)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSCS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcCC
Confidence            346999999999999999999779999996 99999999999999888643

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.48  E-value=3.5e-14  Score=100.43  Aligned_cols=47  Identities=26%  Similarity=0.427  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC--CCCHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI--SKTPTQVASHAQKYFI  172 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~--tRT~~Q~~sh~qky~~  172 (286)
                      ++||+|||++|+++|.+||.++|..||. +++  +||+.||+.||.+|.+
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence            5999999999999999999889999996 999  9999999999998864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.47  E-value=6.1e-14  Score=104.19  Aligned_cols=54  Identities=24%  Similarity=0.396  Sum_probs=48.7

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcC--CCCHHHHHHHHHHHHHHH
Q 023196          120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI--SKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~--tRT~~Q~~sh~qky~~r~  174 (286)
                      ++++.++||+|||++|+++|++||.++|..||. +++  +||+.||+.||.+|+...
T Consensus         6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p~   61 (69)
T 1ity_A            6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKLK   61 (69)
T ss_dssp             CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHTS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCCC
Confidence            345567999999999999999999889999996 999  999999999999988764

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.4e-14  Score=105.72  Aligned_cols=49  Identities=16%  Similarity=0.480  Sum_probs=44.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      +.+.||.|||++|..+|.+|+..   +|..||..|||||..||++||...+.
T Consensus         8 k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            8 KGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence            56789999999999999999954   59999999999999999999998664

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.45  E-value=3.8e-14  Score=108.74  Aligned_cols=46  Identities=33%  Similarity=0.502  Sum_probs=42.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHH
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY  170 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky  170 (286)
                      ...+||+|||++|+++|++|| ++|..||+ +|++||+.||+.||++|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence            457999999999999999999 59999996 99999999999999765

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.44  E-value=1.1e-13  Score=102.19  Aligned_cols=49  Identities=29%  Similarity=0.485  Sum_probs=44.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcC--CCCHHHHHHHHHHHHH
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI--SKTPTQVASHAQKYFI  172 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~--tRT~~Q~~sh~qky~~  172 (286)
                      |..+||+|||++|+++|++||.++|..||+ +++  +||+.||+.+|.++.+
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence            346999999999999999999889999996 755  9999999999988754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.5e-13  Score=102.29  Aligned_cols=50  Identities=24%  Similarity=0.489  Sum_probs=45.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196          122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI  172 (286)
Q Consensus       122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~  172 (286)
                      .+.++||+|||++|+.+|++||.++|..||+ +|++||+.||+.||.+|+.
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHcC
Confidence            3446999999999999999999779999996 9999999999999988754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=5.7e-13  Score=100.23  Aligned_cols=64  Identities=30%  Similarity=0.518  Sum_probs=52.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCC--CchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCC
Q 023196           23 RSTSWTKEENKRFESALAIYSEST--PDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGY   89 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~t--pdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y   89 (286)
                      ....||.|||++|+++|++|+.++  +.+|.+||++|||||..||++||..++...  +..| .++|++
T Consensus         7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~--~k~g-~~~pg~   72 (75)
T 2yum_A            7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL--TKAG-IPVSGP   72 (75)
T ss_dssp             CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG--STTC-SCCCCS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH--HhcC-CCCCCC
Confidence            567899999999999999999765  378999999999999999999997776543  2333 356665

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=2.3e-13  Score=103.14  Aligned_cols=51  Identities=24%  Similarity=0.439  Sum_probs=44.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196          122 KKGVPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       122 kKg~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky~~r  173 (286)
                      ....+||.|||++|+.+|.+||.   .+|.+||+ +|||||..||++||+.+...
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHHSS
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHc
Confidence            34569999999999999999994   38999996 99999999999999876543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=6.4e-13  Score=96.86  Aligned_cols=49  Identities=22%  Similarity=0.279  Sum_probs=45.0

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196          117 SDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus       117 ~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                      .+.+|+...+||+||+++|++++.+||+ +|..||. +|++||..||..||
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~-~l~~rt~~~~v~~Y   53 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLYY   53 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH-HCTTSCHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHH
Confidence            4567777889999999999999999998 9999995 99999999999986

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=8e-13  Score=97.22  Aligned_cols=51  Identities=24%  Similarity=0.420  Sum_probs=46.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s  176 (286)
                      +..+||+|||++|++++++||. +|..||+  +++||+.||++||++|+.....
T Consensus         8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~   58 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQ   58 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhc
Confidence            3469999999999999999999 9999995  6789999999999999998764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.35  E-value=3.3e-12  Score=116.00  Aligned_cols=135  Identities=12%  Similarity=0.185  Sum_probs=91.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC--CCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcc
Q 023196           23 RSTSWTKEENKRFESALAIYSES--TPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVS  100 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~--tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~  100 (286)
                      ....||+|||++|..++.++|..  +...|..||.+|||||..+|+.||..++..-  ++-. +..+...   -.+.  .
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--ln~v-y~~ded~---~Li~--d   78 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--LEYV-YEVDKFG---KLVR--D   78 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--CCCE-ECBCTTS---CBCB--C
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--cccc-cccCcch---hhhh--c
Confidence            45789999999999999999853  2334999999999999999999999977642  1100 0000000   0000  0


Q ss_pred             cccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHH-h--------------------------------C----
Q 023196          101 ESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIK-Y--------------------------------G----  143 (286)
Q Consensus       101 ~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~k-y--------------------------------G----  143 (286)
                      .   .|.   +...... +...| ..||.|||-+|...+++ |                                |    
T Consensus        79 ~---~Gn---~ikis~l-p~siK-~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  150 (246)
T 1ign_A           79 D---DGN---LIKTKVL-PPSIK-RKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHV  150 (246)
T ss_dssp             T---TSC---BCEESSC-CCCSC-CCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC---------------------
T ss_pred             c---CCC---ceeeecc-Ccccc-CccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCcccc
Confidence            0   000   0000001 11223 47999999999999987 2                                1    


Q ss_pred             --------------------CCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          144 --------------------KGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       144 --------------------~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                                          .+.|+.||+ ++|+||...+|+||.|+++..
T Consensus       151 ~~~~~~f~~~~~~~~~gp~~~~~fk~ia~-~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          151 PGSEPNFAAYRTQSRRGPIAREFFKHFAE-EHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             ----------CCCCCCCCCCTTHHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccCCcchhhhccccccCcchHHHHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence                                137999996 999999999999999988775

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.34  E-value=7.3e-13  Score=101.60  Aligned_cols=56  Identities=27%  Similarity=0.416  Sum_probs=49.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh-hhhhhhhccC
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL-EEDVSDIEAG   82 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L-~~dv~~IE~G   82 (286)
                      ....||+|||++|++||.+|+    ++|.+||++||+||..||+.||..+ ++|+..+|++
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~   73 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSD   73 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCC
T ss_pred             cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCC
Confidence            457899999999999999999    3699999999999999999999998 7776555544

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-13  Score=107.93  Aligned_cols=51  Identities=37%  Similarity=0.447  Sum_probs=47.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      +.++||+|||.+|++++.+||. +|..||+ +|+|||+.||++||.+|++++.
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            3469999999999999999999 9999996 9999999999999999988763

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.32  E-value=3e-12  Score=89.72  Aligned_cols=49  Identities=18%  Similarity=0.500  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      +.+.||.|||++|..+|..|+.+   +|..||.+|||||..||++||..+++
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999964   59999999999999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.30  E-value=2.8e-12  Score=92.87  Aligned_cols=49  Identities=24%  Similarity=0.295  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ....||+|||++|.+||.+|+.+   +|.+||++|||||..||++||..++.
T Consensus         7 ~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            7 GDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            56789999999999999999954   59999999999999999999998765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.29  E-value=3.9e-12  Score=98.52  Aligned_cols=50  Identities=14%  Similarity=0.298  Sum_probs=46.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhh---hcCCCCHHHHHHHHHHHHHHHh
Q 023196          126 PWTEEEHKRFLMGLIKYGKGDWRNISRN---YVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       126 pWT~EEd~lll~gl~kyG~g~W~~IA~~---~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      +||+|||++|++||++||.|+|+.|++.   ++++||+.||+++|.+++++..
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            7999999999999999999999999973   3899999999999999987654

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.28  E-value=5.2e-12  Score=88.62  Aligned_cols=49  Identities=22%  Similarity=0.448  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ..+.||+|||++|..+|.+|+..   +|..||.+|||||..||++||...+.
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            45789999999999999999953   59999999999999999999998765

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=99.28  E-value=8.1e-12  Score=117.15  Aligned_cols=136  Identities=23%  Similarity=0.277  Sum_probs=95.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhh----------hhccCCCCCCCCCCCcc
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVS----------DIEAGRVPIPGYLSSSF   94 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~----------~IE~G~v~~P~y~~~~f   94 (286)
                      +.||..|...|++|+++||.+   .|..||+.|+|||..+|++.|+-+.....          .||.|...+..+..   
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~---  184 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLS---  184 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHH---
T ss_pred             cccCHHHHHHHHHHHHHhCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHH---
Confidence            579999999999999999975   59999999999999999988887777653          34444322111100   


Q ss_pred             hhhhcccccchhhhhhhcccccc------cccCccCCCCCHHHHHHHHHHHHHhCC---Cchhcchh-----------hh
Q 023196           95 TLELVSESDYDANRKRTLVAKSS------DHERKKGVPWTEEEHKRFLMGLIKYGK---GDWRNISR-----------NY  154 (286)
Q Consensus        95 ~l~~~~~~~~dg~~kr~~~~r~~------~qerkKg~pWT~EEd~lll~gl~kyG~---g~W~~IA~-----------~~  154 (286)
                       +       -..+.+.....+.+      .-...++..||+|||+.||.+|.+||-   |.|..|..           .|
T Consensus       185 -~-------~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf  256 (304)
T 1ofc_X          185 -I-------KKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWF  256 (304)
T ss_dssp             -H-------HHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHH
T ss_pred             -H-------HHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHH
Confidence             0       00000000000000      001125578999999999999999999   99999962           38


Q ss_pred             cCCCCHHHHHHHHHHHHHHH
Q 023196          155 VISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       155 V~tRT~~Q~~sh~qky~~r~  174 (286)
                      +.+||+.+|..|++-.+.-+
T Consensus       257 ~kSRTp~el~rRc~tLi~~i  276 (304)
T 1ofc_X          257 IKSRTALELQRRCNTLITLI  276 (304)
T ss_dssp             HHTCCHHHHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHH
Confidence            99999999999998666544

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.26  E-value=8.5e-12  Score=100.64  Aligned_cols=55  Identities=16%  Similarity=0.309  Sum_probs=48.3

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhh---cCCCCHHHHHHHHHHHHHHH
Q 023196          120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~---V~tRT~~Q~~sh~qky~~r~  174 (286)
                      .+++..+||+|||++|++||++||.|+|+.|++.+   +++||..||+.+|.++++.-
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            45566899999999999999999999999999743   38999999999999887754

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.26  E-value=7.7e-12  Score=90.19  Aligned_cols=49  Identities=16%  Similarity=0.408  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ..+.||+|||++|..+|.+|+..   +|..||.+|||||..||++||..++.
T Consensus         7 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            7 GKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence            56889999999999999999953   59999999999999999999998875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1e-11  Score=91.32  Aligned_cols=55  Identities=22%  Similarity=0.558  Sum_probs=49.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccC
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAG   82 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G   82 (286)
                      ..+.||.|||++|..+++.|+.    +|.+||. +||||..||++||..++.....+|+|
T Consensus         8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            6688999999999999999985    5999999 88999999999999999988777665

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.25  E-value=5.3e-12  Score=95.64  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=39.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHH
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQ  168 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~q  168 (286)
                      +.++||+|||++|++++++||. +|..||+ ++ +||+.||++||.
T Consensus        22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~   64 (73)
T 2llk_A           22 HVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR   64 (73)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence            3469999999999999999999 7999997 88 999999999995

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.24  E-value=9.4e-12  Score=89.70  Aligned_cols=48  Identities=15%  Similarity=0.270  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELE   73 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~   73 (286)
                      ....||+|||++|.++|.+|+.+   +|..||++|| |||..||++||..+.
T Consensus         8 ~~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            8 FDENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999954   5999999999 999999999998753

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.24  E-value=1.3e-11  Score=101.92  Aligned_cols=56  Identities=14%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhh---cCCCCHHHHHHHHHHHHHHHh
Q 023196          120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~---V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .+++..+||+|||++|++||++||.|+|+.|++.+   +++||..||+.+|.++++...
T Consensus        13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            45566799999999999999999999999999743   499999999999999987653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.21  E-value=3e-11  Score=99.79  Aligned_cols=56  Identities=18%  Similarity=0.302  Sum_probs=49.3

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhh---cCCCCHHHHHHHHHHHHHHHh
Q 023196          120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~---V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .+++..+||.|||++|++||++||.|+|+.|++.+   +++||..||+.+|.++++.-.
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            45566799999999999999999999999999743   489999999999999987654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.21  E-value=8.5e-12  Score=98.84  Aligned_cols=46  Identities=26%  Similarity=0.492  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      ++||+|||++|+.+|++||.++|..||. +|++||+.||+.||.+|+
T Consensus         5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            5 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   50 (105)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence            6999999999999999999889999996 999999999999998874

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.21  E-value=2.8e-11  Score=85.39  Aligned_cols=48  Identities=21%  Similarity=0.491  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC--CCCHHHHHHHHHHhhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIP--GKTVLDVIKQYKELEE   74 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP--GRT~~QV~~rYk~L~~   74 (286)
                      .+.||+|||++|..+|+.|+.+   +|..||..||  |||..||++||..++.
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            4789999999999999999954   5999999999  9999999999998764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.21  E-value=2.7e-11  Score=89.27  Aligned_cols=49  Identities=18%  Similarity=0.549  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC--CCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP--GKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP--GRT~~QV~~rYk~L~~   74 (286)
                      ....||+|||++|..+|++|+.+   +|..||+.+|  |||..||++||..|+.
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            66889999999999999999965   5999999977  9999999999999875

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.19  E-value=2.1e-11  Score=96.34  Aligned_cols=50  Identities=32%  Similarity=0.564  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          125 VPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .+||.|||++|+.+|.+||.   .+|.+||+ +|||||..||++||++++....
T Consensus         9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv~   61 (93)
T 2cjj_A            9 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIK   61 (93)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence            58999999999999999984   38999996 9999999999999999887653

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.18  E-value=3.1e-11  Score=99.62  Aligned_cols=84  Identities=18%  Similarity=0.295  Sum_probs=69.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC----CCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI----PGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLEL   98 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v----PGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~   98 (286)
                      ....||.|||+.|..+|.+|+.+   +|..||..+    +|||..||++||..++.-.. +                   
T Consensus        16 ~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~-~-------------------   72 (121)
T 2juh_A           16 IRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS-I-------------------   72 (121)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH-T-------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc-c-------------------
Confidence            56799999999999999999975   699999984    89999999999999886211 0                   


Q ss_pred             cccccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhc
Q 023196           99 VSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRN  149 (286)
Q Consensus        99 ~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~  149 (286)
                                         .+..+++.+|++||+.+++.+...+|. +|.+
T Consensus        73 -------------------~p~~krg~~~p~e~~~rv~~~h~~~gn-~~~~  103 (121)
T 2juh_A           73 -------------------APQQRRGEPVPQDLLDRVLAAHAYWSQ-QQGK  103 (121)
T ss_dssp             -------------------CSTTCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred             -------------------CCcccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence                               001234569999999999999999998 8876

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.15  E-value=5.3e-11  Score=89.03  Aligned_cols=50  Identities=34%  Similarity=0.585  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDV   76 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv   76 (286)
                      ..+.||.|||++|..+|..|+.    +|..||.+|||||..||+.||..++...
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            6689999999999999999997    4999999999999999999999887643

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.15  E-value=2.6e-11  Score=96.82  Aligned_cols=46  Identities=33%  Similarity=0.634  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      ++||+|||++|+.+|.+||.++|..||. +|++||+.||+.||.+|+
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence            4899999999999999999889999996 999999999999998875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.15  E-value=3.7e-11  Score=99.14  Aligned_cols=47  Identities=19%  Similarity=0.323  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI  172 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~  172 (286)
                      ++||+|||++|+.+|.+||.++|..||. +|++||+.||+.||++|+.
T Consensus         3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~   49 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLD   49 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhccC
Confidence            5899999999999999999889999996 9999999999999988864

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=99.14  E-value=2.2e-11  Score=109.76  Aligned_cols=51  Identities=31%  Similarity=0.425  Sum_probs=46.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      +...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||.+|.+|+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHh
Confidence            34579999999999999999999 9999997 999999999999999887664

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.13  E-value=4.5e-11  Score=98.09  Aligned_cols=48  Identities=21%  Similarity=0.369  Sum_probs=44.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI  172 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~  172 (286)
                      +.++||+|||++|+.+|.+||. +|..||. +|++||+.||+.||.+|+.
T Consensus        10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLA   57 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhcc
Confidence            3469999999999999999998 9999996 9999999999999988863

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.11  E-value=1.3e-10  Score=86.18  Aligned_cols=49  Identities=20%  Similarity=0.500  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC--CCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP--GKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP--GRT~~QV~~rYk~L~~   74 (286)
                      ..+.||+|||++|..+|.+|+.+   +|..||..||  |||..||++||..++.
T Consensus         9 ~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            56789999999999999999954   5999999999  9999999999999887

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.08  E-value=8.8e-11  Score=86.33  Aligned_cols=49  Identities=16%  Similarity=0.339  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchh--hhcCCCCHHHHHHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKGDWRNISR--NYVISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~--~~V~tRT~~Q~~sh~qky~~r  173 (286)
                      ..+||+||++.|++||++||+ +|+.|+.  .|+++||...++++|....++
T Consensus         8 r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            8 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            358999999999999999999 9999993  288999999999999766544

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=2.1e-10  Score=83.44  Aligned_cols=46  Identities=20%  Similarity=0.289  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL   72 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L   72 (286)
                      ....||+||+++|+.++++||.+    |.+||++||+||+.||+++|..-
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence            45789999999999999999964    99999999999999999999754

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.07  E-value=2.9e-10  Score=93.88  Aligned_cols=79  Identities=18%  Similarity=0.200  Sum_probs=64.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC----CCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI----PGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLEL   98 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v----PGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~   98 (286)
                      ....||.|||+.|..+|.+|+.+   +|..|+..+    +|||..||+++|..++.-..           +.        
T Consensus        30 ~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~-----------~~--------   87 (122)
T 2roh_A           30 IRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS-----------IA--------   87 (122)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH-----------SC--------
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc-----------CC--------
Confidence            66799999999999999999976   699999974    89999999999999885210           00        


Q ss_pred             cccccchhhhhhhcccccccccCccCCCCCHHH-HHHHHHHHHHhCC
Q 023196           99 VSESDYDANRKRTLVAKSSDHERKKGVPWTEEE-HKRFLMGLIKYGK  144 (286)
Q Consensus        99 ~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EE-d~lll~gl~kyG~  144 (286)
                                           +..+.+.|+++| +.+++++...||.
T Consensus        88 ---------------------p~~kr~~~~p~e~~~~v~~~h~~~g~  113 (122)
T 2roh_A           88 ---------------------PQQRRGAPVPQELLDRVLAAQAYWSV  113 (122)
T ss_dssp             ---------------------TTTCCCSSCCHHHHHHHHHHHHHHHS
T ss_pred             ---------------------ccccCCCCCCHHHHHHHHHHHHHHhh
Confidence                                 011235899999 7889999999997

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=4.7e-10  Score=82.27  Aligned_cols=46  Identities=30%  Similarity=0.527  Sum_probs=41.5

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196          121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus       121 rkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                      +.+..+||+||+++|++||.+||+ +|..|++++|++||..||..+|
T Consensus         6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY   51 (63)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence            344579999999999999999999 9999996579999999999886

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.98  E-value=5.3e-10  Score=84.58  Aligned_cols=57  Identities=12%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             CCccc--cCCCCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196           14 SNWFL--QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED   75 (286)
Q Consensus        14 ~~~~~--~~~~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d   75 (286)
                      .+|+.  +.....+.||+|||++|.+++++|+..    |.+||.+| |||..||++||..|..+
T Consensus        11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~~   69 (73)
T 2llk_A           11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKDT   69 (73)
T ss_dssp             --------CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred             cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence            45552  333477899999999999999999964    99999999 99999999999987653

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.95  E-value=3.6e-10  Score=85.66  Aligned_cols=45  Identities=20%  Similarity=0.412  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKY  170 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky  170 (286)
                      .+||+||+++|+.||..|+.   ++|.+||. +|+|||..+|+.||..+
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence            57999999999999999997   58999996 99999999999998644

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.93  E-value=1e-09  Score=82.71  Aligned_cols=46  Identities=24%  Similarity=0.554  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      ..+||.||+++|+.+|.+||.   .+|.+||. ++ +||..||++||+.+.
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHHH
Confidence            468999999999999999984   48999996 77 899999999997663

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.92  E-value=2.1e-09  Score=80.44  Aligned_cols=45  Identities=27%  Similarity=0.402  Sum_probs=41.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196          122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus       122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                      ....+||+||.++|++||.+||+ +|..|++++|++||..||..+|
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY   50 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY   50 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHH
Confidence            34468999999999999999999 9999996579999999999987

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.85  E-value=1.3e-08  Score=78.63  Aligned_cols=47  Identities=19%  Similarity=0.323  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh----CCCCCHHHHHHHHHHhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAM----IPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~----vPGRT~~QV~~rYk~L~~   74 (286)
                      ..||.|||+.|..+|.+|+.+   +|..|+..    |+|||..||++||..++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            369999999999999999976   59999996    899999999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.30  E-value=4.8e-10  Score=87.39  Aligned_cols=48  Identities=25%  Similarity=0.354  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ..+.||.|||.+|..++..||.    +|..||.+|||||..||+.||..++.
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYKK   62 (89)
Confidence            6688999999999999999986    49999999999999999999998765

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.79  E-value=2.1e-09  Score=97.65  Aligned_cols=50  Identities=24%  Similarity=0.347  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCc-----hhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGD-----WRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~-----W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .+||+|||++|++++++||..+     |..||+ +++|||+.||++||.+|+++..
T Consensus         9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~l   63 (246)
T 1ign_A            9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKRL   63 (246)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhhc
Confidence            5899999999999999999843     999996 9999999999999999987643

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.78  E-value=1e-09  Score=83.10  Aligned_cols=44  Identities=32%  Similarity=0.670  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---chhcchhhhcCCCCHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKG---DWRNISRNYVISKTPTQVASHAQ  168 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g---~W~~IA~~~V~tRT~~Q~~sh~q  168 (286)
                      +.+||.||+++|..||.+|+++   +|.+||. .|||||..+|+.||+
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence            4689999999999999999976   9999996 999999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=1.8e-08  Score=73.81  Aligned_cols=46  Identities=26%  Similarity=0.547  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhh-hCCCCCHHHHHHHHHHh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAA-MIPGKTVLDVIKQYKEL   72 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa-~vPGRT~~QV~~rYk~L   72 (286)
                      ....||+||.++|+++|++|+++    |.+||. +||+||+.||++.|-.-
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhcc
Confidence            34689999999999999999987    999998 69999999999999753

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.64  E-value=4.2e-08  Score=73.36  Aligned_cols=46  Identities=24%  Similarity=0.476  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhh-hCCCCCHHHHHHHHHHhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAA-MIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa-~vPGRT~~QV~~rYk~L~   73 (286)
                      ...||+||.++|+.+|++|+++    |..||. +||+||+.||++.|-.-.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~wK   54 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMWK   54 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            3689999999999999999987    999999 699999999999997533

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.59  E-value=7.1e-08  Score=77.67  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC----CCCCHHHHHHHHHHhhh
Q 023196           22 SRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI----PGKTVLDVIKQYKELEE   74 (286)
Q Consensus        22 ~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v----PGRT~~QV~~rYk~L~~   74 (286)
                      .....||.|||+.|..+|.+|+.+   +|..|+..+    +|||..||+++|..++.
T Consensus        11 r~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A           11 RIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            366899999999999999999976   699999976    89999999999999986

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=98.57  E-value=1.2e-07  Score=70.08  Aligned_cols=54  Identities=33%  Similarity=0.388  Sum_probs=45.6

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhCCC--chhcchhhh--cCCCCHHHHHHHHHHHHHHHh
Q 023196          121 RKKGVPWTEEEHKRFLMGLIKYGKG--DWRNISRNY--VISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       121 rkKg~pWT~EEd~lll~gl~kyG~g--~W~~IA~~~--V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ++....||+|.|+.|++||..+|..  .++.|-+ .  |++.|..||+||.|||+..++
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHH
Confidence            3455789999999999999999942  3788875 5  468899999999999999876

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.52  E-value=2e-07  Score=68.46  Aligned_cols=48  Identities=19%  Similarity=0.381  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHh---hhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVA---AMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIA---a~vPGRT~~QV~~rYk~L~~   74 (286)
                      ....||+||++.|.+.|.+|+..    |..|+   .++++||..++.++|..|..
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            56789999999999999999964    99999   57789999999999999875

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.50  E-value=1.2e-07  Score=74.80  Aligned_cols=42  Identities=19%  Similarity=0.285  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA  167 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~  167 (286)
                      ...||+||+++|.+++..||+ +|..||. ++++||..||..+|
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~-~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYY   84 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHH-TCTTCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHH-HcCCCCHHHHHHHH
Confidence            468999999999999999999 9999995 99999999999986

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=98.46  E-value=2.2e-06  Score=74.95  Aligned_cols=146  Identities=16%  Similarity=0.296  Sum_probs=82.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh--CCCCCHHHHHHHHHHhhhhhhh-h----------ccCCCCCCCCC
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAM--IPGKTVLDVIKQYKELEEDVSD-I----------EAGRVPIPGYL   90 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~--vPGRT~~QV~~rYk~L~~dv~~-I----------E~G~v~~P~y~   90 (286)
                      -..||+.|-..|.+|+.+||.. .+||+.|++.  +.+||..+|.+.|..+..-... +          +.+......  
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~--   83 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG--   83 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C--
T ss_pred             CCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc--
Confidence            3679999999999999999832 3589999864  7899999998877665542211 1          111100000  


Q ss_pred             CCcchhhhcccccc------h---hhhhhhc-------c-ccc-ccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchh
Q 023196           91 SSSFTLELVSESDY------D---ANRKRTL-------V-AKS-SDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISR  152 (286)
Q Consensus        91 ~~~f~l~~~~~~~~------d---g~~kr~~-------~-~r~-~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~  152 (286)
                       ..|.+.-+...+.      .   -+.....       . .-+ ..........||++||+.||.||.+||-|+|..|..
T Consensus        84 -~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A           84 -PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             -CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence             0010000000000      0   0000000       0 000 001112345799999999999999999999999964


Q ss_pred             h-------------hcCCCCHHHHHHHHHHHHHHH
Q 023196          153 N-------------YVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       153 ~-------------~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      .             +..+++...+..|+. |+.++
T Consensus       163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~  196 (211)
T 4b4c_A          163 DPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL  196 (211)
T ss_dssp             CSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred             ChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence            1             123445567899985 55554

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.46  E-value=1.6e-07  Score=84.79  Aligned_cols=48  Identities=21%  Similarity=0.363  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ....||.||+++|+.||++|+.+    |..||..|++||+.||+.+|.....
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999976    9999999999999999999986554

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.44  E-value=2.6e-07  Score=72.76  Aligned_cols=46  Identities=17%  Similarity=0.348  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~   73 (286)
                      ...||+||-++|++++.+||++    |.+||++||+||+.||++.|-...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~K   88 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK   88 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhccc
Confidence            4689999999999999999986    999999999999999999997543

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=98.00  E-value=6.2e-05  Score=72.32  Aligned_cols=139  Identities=22%  Similarity=0.314  Sum_probs=87.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcch-hhhcc--
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFT-LELVS--  100 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~-l~~~~--  100 (286)
                      +.||.-|=..|.+|+++||.+   .-..||+.|. |||..+|.+.++-+..-...       +.+|..- +. ++-..  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~---d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~E-------i~d~eri-i~~IEkgE~k  192 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRN---SIQAIARELAPGKTLEEVRAYAKAFWSNIER-------IEDYEKY-LKIIENEEEK  192 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTT---CHHHHHSSCCCSSSHHHHHHHHHHHHHTCSS-------CSCCTTT-HHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHh---HHHHHHHHHccCCCHHHHHHHHHHHHHhhhh-------hccHHHH-HHHHHHHHHH
Confidence            579999999999999999975   5889999998 99999999655544432111       1222100 00 00000  


Q ss_pred             cccc----hhhhhhhccccc--------ccccCccCCCCCHHHHHHHHHHHHHhCC---Cchhcchh-----------hh
Q 023196          101 ESDY----DANRKRTLVAKS--------SDHERKKGVPWTEEEHKRFLMGLIKYGK---GDWRNISR-----------NY  154 (286)
Q Consensus       101 ~~~~----dg~~kr~~~~r~--------~~qerkKg~pWT~EEd~lll~gl~kyG~---g~W~~IA~-----------~~  154 (286)
                      ..-.    ..+.++....+.        -.....++..||+|||+.||.+|-+||-   |.|..|-.           -|
T Consensus       193 i~r~~~~~~~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF  272 (374)
T 2y9y_A          193 IKRVKMQQEALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFY  272 (374)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHH
Confidence            0000    000000000000        0011113457999999999999999998   99999932           24


Q ss_pred             cCCCCHHHHHHHHHHHHHHH
Q 023196          155 VISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       155 V~tRT~~Q~~sh~qky~~r~  174 (286)
                      +.+||+..|..|+.-.+.-+
T Consensus       273 ~kSRT~~EL~rRc~tLi~~I  292 (374)
T 2y9y_A          273 FRSRTPVELARRGNTLLQCL  292 (374)
T ss_dssp             HHTCCHHHHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHH
Confidence            89999999999997655544

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.85  E-value=1.3e-05  Score=58.01  Aligned_cols=47  Identities=11%  Similarity=0.273  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHHHh--------CCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKY--------GKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~ky--------G~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      .++|+|||++|++.|.+|        |..-|+.|++..++.+|-.+++.||.|++
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            589999999999999999        66689999964799999999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.81  E-value=3.1e-05  Score=61.06  Aligned_cols=49  Identities=8%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhc-----CCCCHHHHHHHHHHHHHHHh
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYV-----ISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V-----~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .+||.||...|++++++||. +|..|+. .+     ++||..++++||-...+++.
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~   84 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLA   84 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            58999999999999999998 9999996 66     58999999999988777775

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.81  E-value=2.1e-05  Score=77.76  Aligned_cols=47  Identities=21%  Similarity=0.368  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~   73 (286)
                      ....||.||.++|+.+|.+|+.+    |..||..|++||+.||+.+|....
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45789999999999999999986    999999999999999999997543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.67  E-value=9.1e-05  Score=58.36  Aligned_cols=49  Identities=16%  Similarity=0.342  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC-----CCCCHHHHHHHHHHhhhhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMI-----PGKTVLDVIKQYKELEEDVS   77 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v-----PGRT~~QV~~rYk~L~~dv~   77 (286)
                      ..||.||+..|..++..|+.    ||..|+..+     ++||+.++++||..+...+.
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~   84 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA   84 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            67999999999999999997    599999999     58999999999998877543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.52  E-value=0.00015  Score=56.92  Aligned_cols=52  Identities=17%  Similarity=0.351  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED   75 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d   75 (286)
                      .-..||+|||+.+..+..+-+. +++.|..||+.|.+|+..||.+||.+|..-
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            3457999999999998887664 367899999999999999999999999763

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.52  E-value=0.00017  Score=56.59  Aligned_cols=53  Identities=25%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCC--CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          122 KKGVPWTEEEHKRFLMGLIKYGK--GDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       122 kKg~pWT~EEd~lll~gl~kyG~--g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .+.+-||.|||+.+|...++-|.  ..|..||+ .+.+|++.||++|+|..++...
T Consensus        31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm~Lf~   85 (95)
T 1ug2_A           31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHHHHHH
Confidence            34578999999999999999985  38999996 8999999999999999888775

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.35  E-value=0.00036  Score=50.30  Aligned_cols=50  Identities=8%  Similarity=0.130  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CCchhHHHhh-hCCCCCHHHHHHHHHHhh
Q 023196           24 STSWTKEENKRFESALAIYSES-----TPDRWIKVAA-MIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~-----tpdRW~kIAa-~vPGRT~~QV~~rYk~L~   73 (286)
                      ...+|.|||+.|...|+.+...     ...-|..+|+ .+|.+|-..|++||.+-+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            4679999999999999998432     2456999999 899999999999998754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.44  E-value=3.1e-05  Score=57.74  Aligned_cols=50  Identities=20%  Similarity=0.313  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC--CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          124 GVPWTEEEHKRFLMGLIKYGK--GDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~--g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .+-||.|||+.+|...++-|.  ..|..||. -+ +||+.||.+|++..+....
T Consensus        14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~Lf~   65 (70)
T 2lr8_A           14 IILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKLFE   65 (70)
Confidence            468999999999999999886  38999996 66 9999999999998877654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.39  E-value=3.6e-05  Score=57.39  Aligned_cols=49  Identities=16%  Similarity=0.268  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      --.||+|||+.+..+..+-+.. ++.|..||..+ +||+.||.+||.+|+.
T Consensus        14 vvlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           14 IILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            3579999999998888765543 57799999999 9999999999999875

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=97.19  E-value=0.0015  Score=60.30  Aligned_cols=50  Identities=18%  Similarity=0.168  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh--CCCCCHHHHHHHHHHhhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAM--IPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~--vPGRT~~QV~~rYk~L~~   74 (286)
                      .+.||..|...|.+++.+|+.- .+||+.|++.  |+.|+..++.+-|..|.+
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li~   54 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMME   54 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            4679999999999999999953 3589999654  568999988888877665

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.70  E-value=0.0021  Score=60.19  Aligned_cols=49  Identities=31%  Similarity=0.553  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      ..||..+-..|+.|+.+||+.+|..||. .|+++|+.+|+.+++-++.|.
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence            3699999999999999999999999996 999999999999988777776

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.68  E-value=0.0042  Score=48.82  Aligned_cols=49  Identities=16%  Similarity=0.342  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-----CCCHHHHHHHHHHhhhhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-----GKTVLDVIKQYKELEEDVS   77 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-----GRT~~QV~~rYk~L~~dv~   77 (286)
                      ..||.||...|-.++..|+.    ||..|+....     .||+.|+++||-.+...+.
T Consensus        31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~   84 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA   84 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            56999999999999999997    5999999985     6999999999998877553

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.60  E-value=0.0032  Score=47.75  Aligned_cols=57  Identities=11%  Similarity=0.296  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC------CCCCchhHHHhhhCC----CCCHHHHHHHHHHhhhhhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYS------ESTPDRWIKVAAMIP----GKTVLDVIKQYKELEEDVSDI   79 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~------~~tpdRW~kIAa~vP----GRT~~QV~~rYk~L~~dv~~I   79 (286)
                      ....||.+|..+|..+.....      ......|+.||+.|-    .||+.||..+|+.|......+
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~   69 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKA   69 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            357899999999999886421      122347999999975    599999999999999876543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.36  E-value=0.0045  Score=46.91  Aligned_cols=52  Identities=13%  Similarity=0.261  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---------CchhcchhhhcC----CCCHHHHHHHHHHHHHHHhc
Q 023196          124 GVPWTEEEHKRFLMGLIKYGK---------GDWRNISRNYVI----SKTPTQVASHAQKYFIRQLS  176 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~---------g~W~~IA~~~V~----tRT~~Q~~sh~qky~~r~~s  176 (286)
                      ...||.+|-.+||.+....-.         ..|..||. .+.    .||+.||+..|.+.....+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk~   68 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFKK   68 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            458999999999999875321         27999996 553    79999999999888777763

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.86  E-value=0.015  Score=45.76  Aligned_cols=50  Identities=10%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhc----CCCCHHHHHHHHHHHHHHHh
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYV----ISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V----~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ..||.||-..|++++++|+- +|--|+--+-    +.||..+++.||-...+++.
T Consensus        31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~   84 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA   84 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            47999999999999999998 9999996333    47999999999988888875

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=95.48  E-value=0.015  Score=50.43  Aligned_cols=51  Identities=18%  Similarity=0.263  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--CCchhcchhh-hcCCCCHHHHHHHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYG--KGDWRNISRN-YVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG--~g~W~~IA~~-~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      -..||+.|-+.|+.++.+||  .++|..|++. -+.+||...|+..+..+..+.
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            35799999999999999999  5799999852 267999999999887766654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.82  E-value=0.34  Score=35.40  Aligned_cols=49  Identities=16%  Similarity=0.204  Sum_probs=38.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC--CCCCHHHHHHHHHHh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI--PGKTVLDVIKQYKEL   72 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v--PGRT~~QV~~rYk~L   72 (286)
                      ..-.||+|.-+.|..||..++.+ ---+..|.+.+  +|.|..+|.-|-++.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            44689999999999999999843 22367887775  589999998776654

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=90.16  E-value=0.33  Score=46.57  Aligned_cols=49  Identities=24%  Similarity=0.443  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC-CCCHHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~-tRT~~Q~~sh~qky~~r~  174 (286)
                      ..||.-+=..|+.|..+||+.+-..||. .|. ++|..+|+.++.-|+.|.
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry  173 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNI  173 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhh
Confidence            3699999999999999999999999996 887 999999998887777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	9e-20
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	3e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-16
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-06
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	8e-16
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	3e-13
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	0.004
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	8e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-04
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	6e-05
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	7e-08
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-07
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	0.001
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-05
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-05
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	0.003
d1ofcx1	52	a.4.1.3 (X:799-850) SANT domain of the nucleosome	0.004

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (194), Expect = 9e-20
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGR 83
          +  WT+E+  +   ++  +   TP RW K+A  + G++V DV  + K+L++ V+    G 
Sbjct: 1  APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT-CSPGM 58

Query: 84 V 84
          V
Sbjct: 59 V 59

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 127 WTEEEHKRFLMGLIKYGKGD---WRNISRNYVISKTPTQVASHAQK 169
           WTEE+  +    ++K+  G    W  I+    + ++ T V + A++
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAH--ELGRSVTDVTTKAKQ 47

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 69.6 bits (170), Expect = 3e-16
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVP 85
           W+ +ENK FE ALA+Y + TPDRW  VA  + G+T  +V K Y+ L ED+  IE+G+VP
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 62

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISR--NYVISKTPTQVASH 166
           G PW+ +E+K F   L  Y K      +     V  +TP +V  H
Sbjct: 1   GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKH 45

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 68.4 bits (167), Expect = 8e-16
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWR--NISRNY-VISKTPTQVASHAQKYFIRQ 174
           ++K  V WT E H +FL  +   G        I     V   T   VASH QK+ +  
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (149), Expect = 3e-13
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRR 183
           W+  E   F   L KYGK D+ +I ++++  K+ T +  +   Y  +       ++R
Sbjct: 4   WSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY--YMWKTTDRYVQQKR 57

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 26 SWTKEENKRFESALAIYSESTPDRWIKVAA-MIPGKTVLDVIKQY 69
           W+  E   FE AL  Y       +  +    +P K++  +I+ Y
Sbjct: 3  EWSASEACLFEEALEKY----GKDFNDIRQDFLPWKSLTSIIEYY 43

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 6e-09
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRP 184
           V WT EE + F  GL K+G+  W  IS+  + S+T  QV S+A++YF  ++  G DK  P
Sbjct: 3   VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 185 S 185
           +
Sbjct: 61  N 61

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 8e-09
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 19 QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72
          +  S    WT+ + K  E AL  Y   + D W K+A  +P K+  D I +YK L
Sbjct: 7  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 116 SSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISR--NYVISKTPTQVASH 166
             +  R    PWT+ + K   + L +Y +G      +    V SK+     + 
Sbjct: 4   RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIAR 56

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASH 166
           +R+    W+E+E + F    +++ K ++  I+  ++  KT  +   +
Sbjct: 13  DRQVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLY 57

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 19 QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQY 69
          ++      W+++E + F      +    P  +  +A+ +  KTV + +  Y
Sbjct: 12 KDRQVMNMWSEQEKETFREKFMQH----PKNFGLIASFLERKTVAECVLYY 58

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 7e-08
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171
           WT +E    L  ++  G G+W++++   + +KT  +   H  KYF
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYF 47

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173
           +K    WT EE    +  + KYG+ D++ IS   + +K+  QV +    Y  R
Sbjct: 2   QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYK 70
          +  WT EE      A+  Y       +  ++ +I  K+V+ V   + 
Sbjct: 5  NARWTTEEQLLAVQAIRKY----GRDFQAISDVIGNKSVVQVKNFFV 47

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQV 163
           K+   W  EE K    G+ KYG+G+W  I  +Y   ++T   +
Sbjct: 1   KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 42

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQV 163
           KK   WT EE +    G+ KYG+G+W  IS+NY   ++T   +
Sbjct: 1   KKQ-KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY 170
            WT EE ++    + + G  DW+ I+  Y+ ++T  Q     QK 
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKV 46

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173
           WT+ +  +F+    KYG+ D  NI+   V  KTP +V  +   ++ R
Sbjct: 2   WTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWER 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.78
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.63
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.6
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.54
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.52
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.52
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.5
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.49
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.41
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.4
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.39
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.36
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.32
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.31
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.3
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.28
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.27
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.26
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.24
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.21
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.18
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.17
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.17
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	99.14
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.1
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.08
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.05
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.04
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.95
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.95
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.62
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.62
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.57
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	98.12
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.09
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	96.76
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.56
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.24
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	94.32
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.11
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.11
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	89.51
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	87.8

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.78  E-value=1.2e-19  Score=131.71  Aligned_cols=63  Identities=48%  Similarity=0.862  Sum_probs=60.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCC
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPI   86 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~   86 (286)
                      +.+||.|||++|++||+.|+.+.+++|.+||.+|||||..||++||+.|+.|+..||+|.||+
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~iesg~vpf   63 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF   63 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccccCCCCC
Confidence            368999999999999999999999999999999999999999999999999999999999874

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-16  Score=113.89  Aligned_cols=51  Identities=31%  Similarity=0.676  Sum_probs=49.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDV   76 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv   76 (286)
                      .+||.||+++|++||++||.++|+||++||++| |||+.||+.||+.|.+++
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~   52 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   52 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999 999999999999998865

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3e-16  Score=107.65  Aligned_cols=45  Identities=29%  Similarity=0.682  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       126 pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      .||+|||.+|+++|++||.++|..||. +|++||+.||+.||++||
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~-~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHH-HcCCCCHHHHHHHHHHhC
Confidence            599999999999999999989999996 999999999999999997

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.4e-15  Score=106.78  Aligned_cols=50  Identities=36%  Similarity=0.630  Sum_probs=47.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL   72 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L   72 (286)
                      ....||.|||++|+.||..|+.+++++|.+||++|||||..||++||+.|
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            55789999999999999999999999999999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.5e-15  Score=105.79  Aligned_cols=52  Identities=42%  Similarity=0.722  Sum_probs=47.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhcCC
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGG  178 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s~~  178 (286)
                      +.||+|||++|+++|.+||+ +|..||+ +|++||+.||++||++|+.+....+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCHHHHHHHHHHHHHhcc-hHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            46999999999999999997 9999996 9999999999999999999876433

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.6e-15  Score=103.69  Aligned_cols=46  Identities=26%  Similarity=0.506  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      +|||+|||++|+++|++||.++|..||+ +|++||+.||++||++|+
T Consensus         4 g~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhC
Confidence            5999999999999999999889999997 999999999999999875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.2e-14  Score=100.57  Aligned_cols=46  Identities=28%  Similarity=0.516  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      .+||+|||++|+.+|.+||.++|..||. +|++||+.||+.||++|+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhC
Confidence            4799999999999999999889999996 999999999999999986

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=9.1e-15  Score=100.26  Aligned_cols=45  Identities=22%  Similarity=0.505  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      .|||+|||++|++++++||. +|..||+ +||+||+.||++||..++
T Consensus         2 ~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh-HHHHHHh-HcCCCCHHHHHHHHHHHc
Confidence            58999999999999999999 9999996 999999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-13  Score=97.00  Aligned_cols=48  Identities=31%  Similarity=0.619  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhh-cCCCCHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNY-VISKTPTQVASHAQKYFI  172 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~-V~tRT~~Q~~sh~qky~~  172 (286)
                      .+||+|||++|+++|++||.|+|..||+.+ +++||+.||+.+|++|.+
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            589999999999999999998999999732 579999999999988754

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-13  Score=95.98  Aligned_cols=47  Identities=28%  Similarity=0.524  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhh-cCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNY-VISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~-V~tRT~~Q~~sh~qky~  171 (286)
                      .+||+|||++|+++|.+||.|+|..||+.+ +.+||+.||+.+|+++.
T Consensus         3 ~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            599999999999999999999999999633 45999999999998763

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.39  E-value=2.2e-13  Score=98.12  Aligned_cols=49  Identities=35%  Similarity=0.647  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---chhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196          124 GVPWTEEEHKRFLMGLIKYGKG---DWRNISRNYVISKTPTQVASHAQKYFIR  173 (286)
Q Consensus       124 g~pWT~EEd~lll~gl~kyG~g---~W~~IA~~~V~tRT~~Q~~sh~qky~~r  173 (286)
                      |.+||.|||++|+++|++||.+   +|.+||. +|++||+.||+.||++....
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~-~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHH-HcCCCCHHHHHHHHHHHHHH
Confidence            4589999999999999999986   4999996 99999999999999655443

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.7e-13  Score=95.43  Aligned_cols=47  Identities=30%  Similarity=0.589  Sum_probs=42.4

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhCCC---chhcchhhhcCCCCHHHHHHHHH
Q 023196          121 RKKGVPWTEEEHKRFLMGLIKYGKG---DWRNISRNYVISKTPTQVASHAQ  168 (286)
Q Consensus       121 rkKg~pWT~EEd~lll~gl~kyG~g---~W~~IA~~~V~tRT~~Q~~sh~q  168 (286)
                      +....+||+|||++|+++|.+||.+   +|.+||. +||+||+.||+.||+
T Consensus         9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~-~l~~Rt~~qc~~R~~   58 (60)
T d2cqra1           9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYK   58 (60)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHH-HcCCCCHHHHHHHHH
Confidence            3344699999999999999999986   5999996 999999999999995

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=4.6e-14  Score=108.17  Aligned_cols=50  Identities=14%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--CCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           25 TSWTKEENKRFESALAIYSES--TPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~--tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      +.||.|||++|.++|.+||..  ....|.+||.+|||||..||++||...+.
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~   53 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS   53 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTG
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            679999999999999999842  34569999999999999999999998765

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.5e-12  Score=90.73  Aligned_cols=49  Identities=22%  Similarity=0.448  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ..+.||.|||++|..+|.+|+.+   +|..||+.|||||..||++||...++
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            45789999999999999999865   59999999999999999999998664

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.2e-12  Score=88.93  Aligned_cols=47  Identities=19%  Similarity=0.527  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      +.||.|||++|..+|.+|+.+   .|.+||..|||||..||++||...++
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            579999999999999999965   49999999999999999999999775

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2e-12  Score=88.20  Aligned_cols=45  Identities=27%  Similarity=0.352  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL   72 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L   72 (286)
                      ..||.|||.+|.+||.+|+.+   +|..||++|||||..||+.||.+.
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~---nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCc---cHHHHHHHcCCCCHHHHHHHHHHh
Confidence            359999999999999999965   599999999999999999999863

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-12  Score=95.26  Aligned_cols=46  Identities=20%  Similarity=0.280  Sum_probs=42.2

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHH
Q 023196          121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQ  168 (286)
Q Consensus       121 rkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~q  168 (286)
                      ++...+||+||+++|+++|.+||+ +|..||+ +|++||..||++||.
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~-~~~~rt~~q~~~~yy   59 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYYY   59 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHH-HTTTSCHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHH-HcCCCCHHHHHHHHH
Confidence            445679999999999999999998 9999996 999999999999973

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-12  Score=94.35  Aligned_cols=46  Identities=30%  Similarity=0.450  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI  172 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~  172 (286)
                      .+||+||+.+|++++.+||+ +|..||+ +|+|||+.||++||.+|.+
T Consensus         6 ~~WT~eE~~~f~~~~~~~G~-~w~~Ia~-~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           6 ARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             SSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHhCc-hHHHHHH-HcCCCCHHHHHHHHHHHHh
Confidence            57999999999999999998 9999996 9999999999999977643

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.24  E-value=6.7e-12  Score=91.15  Aligned_cols=55  Identities=33%  Similarity=0.386  Sum_probs=46.1

Q ss_pred             CccCCCCCHHHHHHHHHHHHHhCCCch--hcchhhh-cCCCCHHHHHHHHHHHHHHHh
Q 023196          121 RKKGVPWTEEEHKRFLMGLIKYGKGDW--RNISRNY-VISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       121 rkKg~pWT~EEd~lll~gl~kyG~g~W--~~IA~~~-V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ++....||+|||+.|++||..||.++|  +.|...+ |+++|..||+||+|||+.++.
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            445578999999999999999998444  4676422 899999999999999999886

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.1e-11  Score=84.67  Aligned_cols=45  Identities=29%  Similarity=0.577  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~   73 (286)
                      .+||+|||++|..++.+||.    +|..||.+|||||..||+.||..++
T Consensus         2 ~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh----HHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            57999999999999999995    4999999999999999999998864

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.18  E-value=1.3e-11  Score=93.29  Aligned_cols=49  Identities=14%  Similarity=0.313  Sum_probs=44.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhhh---cCCCCHHHHHHHHHHHHHHH
Q 023196          126 PWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       126 pWT~EEd~lll~gl~kyG~g~W~~IA~~~---V~tRT~~Q~~sh~qky~~r~  174 (286)
                      |||.|||++|+.||++||.|+|..|++.+   +++||+.||+.+|.+|+...
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            89999999999999999999999999743   68999999999999988654

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.6e-11  Score=88.16  Aligned_cols=47  Identities=32%  Similarity=0.597  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED   75 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d   75 (286)
                      ..||.|||++|..||.+||.+    |..||++|||||..||+.||..++..
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcch----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            679999999999999999954    99999999999999999999987764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=6.2e-12  Score=96.10  Aligned_cols=50  Identities=24%  Similarity=0.347  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCc-----hhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGD-----WRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~-----W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      ++||+|||++|+++|.+||..+     |..||+ +||+||+.||+.||.+|+....
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~-~lpgRt~~qcr~Rw~~~L~p~l   56 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKRL   56 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHH-HcCCCCHHHHHHHHHHHcCccc
Confidence            4899999999999999999743     999996 9999999999999999987754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=3.2e-11  Score=85.33  Aligned_cols=47  Identities=28%  Similarity=0.489  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      ..||+||+++|++|+.+||+ +|..|++.+||+||..||.++|  |.-+.
T Consensus         2 d~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fY--Y~~Kk   48 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY--YMWKT   48 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH--HHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHH--HHHhC
Confidence            36999999999999999999 9999997578999999999997  44443

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.10  E-value=6.3e-11  Score=89.49  Aligned_cols=47  Identities=19%  Similarity=0.323  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh----CCCCCHHHHHHHHHHhhh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAM----IPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~----vPGRT~~QV~~rYk~L~~   74 (286)
                      .+||.|||++|..+|.+|+.+   +|..||..    +++||..||++||..++.
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcc---cHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            479999999999999999975   59999975    689999999999999885

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.3e-10  Score=80.61  Aligned_cols=47  Identities=21%  Similarity=0.493  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC--CCCHHHHHHHHHHhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIP--GKTVLDVIKQYKELE   73 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP--GRT~~QV~~rYk~L~   73 (286)
                      ...||+|||++|.++|..|+.+   +|..||..+|  |||..||++||..|.
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~---~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999965   5999999866  899999999999875

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.8e-10  Score=80.60  Aligned_cols=48  Identities=17%  Similarity=0.488  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh--CCCCCHHHHHHHHHHhhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAM--IPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~--vPGRT~~QV~~rYk~L~~   74 (286)
                      ...||.|||++|..+|++|+.+   +|..||..  +++||..||++||..++.
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---hHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            4689999999999999999865   59999998  459999999999999875

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.5e-10  Score=83.29  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196           24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE   74 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~   74 (286)
                      ...||+||+.+|..+|..||.+    |..||++|||||..||+.+|..+..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCch----HHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            4679999999999999999965    9999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.1e-10  Score=83.25  Aligned_cols=47  Identities=17%  Similarity=0.326  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~   73 (286)
                      ....||.||+++|..||.+||.+    |..||.+|||||..||+++|....
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSC----SSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCc----HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            44679999999999999999965    999999999999999999998654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=4.5e-10  Score=87.07  Aligned_cols=51  Identities=25%  Similarity=0.300  Sum_probs=46.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCc---hhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          123 KGVPWTEEEHKRFLMGLIKYGKGD---WRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       123 Kg~pWT~EEd~lll~gl~kyG~g~---W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      +.+.||.|||+.||+.++++|. +   |..||+ ++++||+.||++||+..++.+.
T Consensus        32 ~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~-~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_          32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence            3478999999999999999997 5   999996 9999999999999988887775

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=2.4e-08  Score=70.18  Aligned_cols=44  Identities=25%  Similarity=0.509  Sum_probs=40.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCchhHHHhh-hCCCCCHHHHHHHHHHhh
Q 023196           26 SWTKEENKRFESALAIYSESTPDRWIKVAA-MIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        26 ~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa-~vPGRT~~QV~~rYk~L~   73 (286)
                      .||+||-++|+.++..||++    |.+||+ +||+||+.||++.|-...
T Consensus         3 ~WT~eE~~~F~~~~~~yGKd----f~~I~~~~v~~Ks~~~~v~fYY~~K   47 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMWK   47 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccc----HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence            59999999999999999987    999997 579999999999997543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.5e-08  Score=72.01  Aligned_cols=43  Identities=26%  Similarity=0.614  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---chhcchhhhcCCCCHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKG---DWRNISRNYVISKTPTQVASHAQK  169 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g---~W~~IA~~~V~tRT~~Q~~sh~qk  169 (286)
                      ..||.||+++|..+|.+|+.|   +|.+||. +| +||..||..+++.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~-~v-gkt~~ev~~~~k~   47 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQ   47 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHH-HH-CCCHHHHHHHHHH
Confidence            369999999999999999865   8999996 88 8999999999853

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.1e-07  Score=73.29  Aligned_cols=52  Identities=17%  Similarity=0.351  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED   75 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d   75 (286)
                      ....||+|||+.+...+++++. .+.-|..||+.|+|||..||++||..|..-
T Consensus        32 ~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            5578999999999999999883 244599999999999999999999998763

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.9e-06  Score=61.56  Aligned_cols=49  Identities=22%  Similarity=0.496  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHH
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKE   71 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~   71 (286)
                      ....|+++|...|..||+.+|+..|.-|..||..|+.||..+|-+.|.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~   55 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHh
Confidence            3468999999999999999999999999999999999999999999976

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.09  E-value=0.00059  Score=46.66  Aligned_cols=49  Identities=31%  Similarity=0.544  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196          126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL  175 (286)
Q Consensus       126 pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~  175 (286)
                      .|+.-|=..|+.|+.+||+.+-..||. .|.+||+.+|+..+.-+..|..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~-e~~~Kt~eEV~~Y~~vFw~ry~   49 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERCT   49 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999996 9999999999999988888764

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.76  E-value=0.0022  Score=43.71  Aligned_cols=44  Identities=27%  Similarity=0.375  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196           26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL   72 (286)
Q Consensus        26 ~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L   72 (286)
                      .|+.-|=..|.+|+.+||.+   .-+.||..|.|||..||.+.++-.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~---d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---hHHHHHHHhcCCCHHHHHHHHHHH
Confidence            49999999999999999975   489999999999999987655543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.56  E-value=0.0025  Score=45.08  Aligned_cols=48  Identities=19%  Similarity=0.279  Sum_probs=37.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchh--HHHhhh--CCCCCHHHHHHHHHHhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRW--IKVAAM--IPGKTVLDVIKQYKELE   73 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW--~kIAa~--vPGRT~~QV~~rYk~L~   73 (286)
                      ..-.||+||-++|..||..++.+   +|  ..|.+.  +||+|..||.-|.++.-
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~---~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVE---RAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTT---TCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc---ccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999864   34  456555  78999999997776643

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0049  Score=40.70  Aligned_cols=43  Identities=19%  Similarity=0.421  Sum_probs=36.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchh--hhcCCCCHHHHHHHHHH
Q 023196          126 PWTEEEHKRFLMGLIKYGKGDWRNISR--NYVISKTPTQVASHAQK  169 (286)
Q Consensus       126 pWT~EEd~lll~gl~kyG~g~W~~IA~--~~V~tRT~~Q~~sh~qk  169 (286)
                      .||+||-.-|+.||++||. .|..|-=  -|-+||+...++-.|.+
T Consensus         3 nft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           3 DFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            6999999999999999999 9999942  25689999988775543

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0079  Score=41.73  Aligned_cols=47  Identities=9%  Similarity=0.243  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--------CchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGK--------GDWRNISRNYVISKTPTQVASHAQKYF  171 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~--------g~W~~IA~~~V~tRT~~Q~~sh~qky~  171 (286)
                      .++|+|||+.|+.-|.++..        --|+.+++.-++.+|-...++||.|.+
T Consensus         3 ~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L   57 (59)
T d1fexa_           3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            58999999999999998743        369999864689999999999976653

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.32  E-value=0.029  Score=44.45  Aligned_cols=50  Identities=16%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCc---hhcchh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGKGD---WRNISR-----------NYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~g~---W~~IA~-----------~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      ...|+|||+-||-.+-+||-|+   |..|-.           -|+.+||+..+..|+...+.-+
T Consensus        50 k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          50 KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            4699999999999999999988   888742           3679999999999997555443

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.032  Score=39.83  Aligned_cols=46  Identities=24%  Similarity=0.496  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196          125 VPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKYFIRQ  174 (286)
Q Consensus       125 ~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~  174 (286)
                      ..|+++|=.+|-.++.-+++   |=|..+|. .|++||...|-.   ||+...
T Consensus         9 ~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~-~VGtRSaeECQ~---ky~~~~   57 (73)
T d1wgxa_           9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQR---KYMENP   57 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHH---HHHHSS
T ss_pred             cccCHHHHHHHHHHHHhcCCCCCccHHHHHH-HHccCCHHHHHH---HHHhCc
Confidence            57999999999999988764   78999996 999999999977   566554

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.098  Score=34.26  Aligned_cols=44  Identities=23%  Similarity=0.475  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC---CCCHHHHHHHHHHh
Q 023196           25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIP---GKTVLDVIKQYKEL   72 (286)
Q Consensus        25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP---GRT~~QV~~rYk~L   72 (286)
                      ..||+||..-|-+.|+.++..    |..|-=.+|   ||+..|+.+.|..|
T Consensus         2 knft~eEv~YL~~GVK~~G~~----WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcch----hhhhhhccCCCCCchhhHHHHHHHhh
Confidence            469999999999999999976    999987776   99999999999876

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.37  Score=32.87  Aligned_cols=50  Identities=8%  Similarity=0.130  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CCchhHHHhh-hCCCCCHHHHHHHHHHhh
Q 023196           24 STSWTKEENKRFESALAIYSES-----TPDRWIKVAA-MIPGKTVLDVIKQYKELE   73 (286)
Q Consensus        24 ~~~WT~EEdk~Le~Ala~~~~~-----tpdRW~kIAa-~vPGRT~~QV~~rYk~L~   73 (286)
                      ....|.|||+.|.+-|+.+...     ...-|..++. .+|..|-.--++||.+-+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L   57 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            3579999999999999987543     2346999985 689999999999997644

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.80  E-value=0.51  Score=36.97  Aligned_cols=54  Identities=17%  Similarity=0.286  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC---C---------CCCHHHHHHHHHHhhhhh
Q 023196           23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI---P---------GKTVLDVIKQYKELEEDV   76 (286)
Q Consensus        23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v---P---------GRT~~QV~~rYk~L~~dv   76 (286)
                      ++...|.|||+-|..++..||-+.++-|++|-..|   |         +||+.++-+|...|+.-+
T Consensus        48 k~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          48 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            55679999999999999999999888899986544   3         899999999999887744