Citrus Sinensis ID: 023198

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLGM
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccEEEcccccEEEEEEcccccccEEcccccccHHHHHHHHHHHHHccccccEEEEEccEEcccccccccccccccccEEEEEccccccEEEEccccccEEccccccccHHHHHHHHHHHccccccccccEEEccccccccccccccccccccEEEEEEEEcEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHcccccccEEEEccEEccccccccccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHccccHcHcEEEEcccEcccccccHHcccccccEEEEcccccEEEEEEcccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEEccccEEEEEEEcccEEEEEEcccccHHHHHHHHHHHHccccHcHEEEEEcccEccccccHHHcccccccEEEEEEEccEEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEccccc
Coil and Loop (DISEMBL)
MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYagqqlengltvidygipnnsvihndsGVMKLYfktpsnektfelkanrSDTIENIKFIIEVregipvheydiyyggKLIESYITldvlninnedtlqmiSVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRicipsedcelfrggeqlqnlktlayydikeNEVLQIIRHVKHSIFVKLLNGRYIILEvakfdtvrDVKDKLFREigqapdsqrLVFKRQqleddrnlasYKIVNESIVNLTDLGM
Flexible Loop (DISEMBL)
mkvkktekieklklrihaKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSnektfelkanrsdtieNIKFiievregipvhEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQtptstvklevrrahtvldvkkmveSMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILevakfdtvrdVKDKLFreigqapdsqrlvfkrqqleddrnlasykivnesivnltdlgm
Low Complexity Region (SEG)
MkvkktekieklklRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLGM
Disordered region (IsUnstruct)
***********LKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQA****RLVFK*******RNLASYKIVNESIVNL*****
Disordered Region (DISOPRED)
MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLGM
Disordered Region (DISEMBL)
MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLGM
Disordered Region (DISPRO)
**V*KTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLGM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
P42739	423	Polyubiquitin (Fragment)	N/A	no	0.968	0.654	0.383	4e-41
P0CH27	356	Ubiquitin-60S ribosomal p	N/A	no	0.968	0.778	0.379	5e-40
P59669	457	Polyubiquitin OS=Geodia c	N/A	no	0.968	0.606	0.372	2e-39
P0CG71	838	Polyubiquitin-A OS=Caenor	yes	no	0.968	0.330	0.372	2e-39
Q8H159	457	Polyubiquitin 10 OS=Arabi	yes	no	0.968	0.606	0.372	2e-39
P0CG85	457	Polyubiquitin OS=Nicotian	N/A	no	0.968	0.606	0.372	2e-39
P0CG84	377	Polyubiquitin (Fragment)	N/A	no	0.968	0.734	0.372	3e-39
P69322	381	Polyubiquitin OS=Pisum sa	N/A	no	0.968	0.727	0.372	3e-39
Q3E7T8	305	Polyubiquitin 14 OS=Arabi	no	no	0.968	0.908	0.372	3e-39
P69325	305	Polyubiquitin OS=Glycine	no	no	0.968	0.908	0.372	3e-39

>sp|P42739|UBIQP_ACECL Polyubiquitin (Fragment) OS=Acetabularia cliftonii PE=3 SV=2

 Score =  168 bits (425), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 167/287 (58%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ +E +K +I  K  E I  D   L +AG+QLE+GLT+ DY I   S +H    
Sbjct: 56  LEVQSSDTVENVKSKIQDK--EGIPPDQQRLIFAGKQLEDGLTLADYNIQKESTLHLVLR 113

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDT+EN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 114 LRGGMQIFVKTLTG-KTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 172

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + TV +VK  ++  +  IP 
Sbjct: 173 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTVENVKSKIQD-KEGIPP 231

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 232 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 291

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           V +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 292 VENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 338

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Acetabularia cliftonii (taxid: 35862)

>sp|P0CH27|RL402_TRYCR Ubiquitin-60S ribosomal protein L40 OS=Trypanosoma cruzi PE=2 SV=1

 Score =  164 bits (416), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Ribosomal protein L40 is a component of the 60S subunit of the ribosome.

Trypanosoma cruzi (taxid: 5693)

>sp|P59669|UBIQP_GEOCY Polyubiquitin OS=Geodia cydonium PE=2 SV=2

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 167 LEVEASDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 225 LRGGMQIFVKTLTG-KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 284 LSDYNIQKESTLHLVVRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQD-KEGIPP 342

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 343 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDT 402

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct: 403 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 449

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Geodia cydonium (taxid: 6047)

>sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A OS=Caenorhabditis elegans GN=ubq-1 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVEASDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct: 251 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 297

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8H159|UBQ10_ARATH Polyubiquitin 10 OS=Arabidopsis thaliana GN=UBQ10 PE=1 SV=2

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ I+ +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CG85|UBI1P_NICSY Polyubiquitin OS=Nicotiana sylvestris GN=UBI11 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ I+ +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Nicotiana sylvestris (taxid: 4096)

>sp|P0CG84|UBI4P_NICSY Polyubiquitin (Fragment) OS=Nicotiana sylvestris GN=UBI4 PE=2 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ I+ +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 11  LEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 68

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 69  LRGGMQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 127

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 128 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-KEGIPP 186

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 187 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 246

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 247 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 293

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Nicotiana sylvestris (taxid: 4096)

>sp|P69322|UBIQP_PEA Polyubiquitin OS=Pisum sativum GN=PU1 PE=2 SV=2

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ I+ +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Pisum sativum (taxid: 3888)

>sp|Q3E7T8|UBQ14_ARATH Polyubiquitin 14 OS=Arabidopsis thaliana GN=UBQ14 PE=1 SV=2

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ I+ +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P69325|UBIQP_SOYBN Polyubiquitin OS=Glycine max GN=SUBI-1 PE=2 SV=2

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ I+ +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
302393778	423	RecName: Full=Polyubiquitin; Contains: R	0.968	0.654	0.383	3e-39
384252612	457	hexaubiquitin protein [Coccomyxa subelli	0.968	0.606	0.379	2e-38
395295	381	polyubiquitin [Volvox carteri f. nagarie	0.968	0.727	0.379	2e-38
302843878	305	polyubiquitin [Volvox carteri f. nagarie	0.968	0.908	0.379	2e-38
2894308	381	polyubiquitin [Nicotiana tabacum]	0.968	0.727	0.379	2e-38
384246185	305	polyubiquitin [Coccomyxa subellipsoidea	0.968	0.908	0.379	2e-38
302595808	356	RecName: Full=Ubiquitin-60S ribosomal pr	0.968	0.778	0.379	3e-38
112983984	913	polyubiquitin [Bombyx mori] gi|4587236|d	0.968	0.303	0.376	4e-38
242021992	844	ubiquitin, putative [Pediculus humanus c	0.968	0.328	0.378	4e-38
260600300	441	ubiquitin [Guzmania wittmackii x Guzmani	0.968	0.628	0.376	6e-38

>gi|302393778|sp|P42739.2|UBIQP_ACECL RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=Ubiquitin-related 1; Contains: RecName: Full=Ubiquitin-related 2; Flags: Precursor gi|433970|emb|CAA82268.1| polyubiquitin [Acetabularia peniculus]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 167/287 (58%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ +E +K +I  K  E I  D   L +AG+QLE+GLT+ DY I   S +H    
Sbjct: 56  LEVQSSDTVENVKSKIQDK--EGIPPDQQRLIFAGKQLEDGLTLADYNIQKESTLHLVLR 113

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDT+EN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 114 LRGGMQIFVKTLTG-KTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 172

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + TV +VK  ++  +  IP 
Sbjct: 173 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTVENVKSKIQD-KEGIPP 231

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 232 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 291

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           V +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 292 VENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 338

Source: Acetabularia peniculus

Species: Acetabularia peniculus

Genus: Acetabularia

Family: Polyphysaceae

Order: Dasycladales

Class: Ulvophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|384252612|gb|EIE26088.1| hexaubiquitin protein [Coccomyxa subellipsoidea C-169]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIENVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVKSKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|395295|emb|CAA52290.1| polyubiquitin [Volvox carteri f. nagariensis]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Source: Volvox carteri f. nagariensis

Species: Volvox carteri

Genus: Volvox

Family: Volvocaceae

Order: Chlamydomonadales

Class: Chlorophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|302843878|ref|XP_002953480.1| polyubiquitin [Volvox carteri f. nagariensis] gi|300261239|gb|EFJ45453.1| polyubiquitin [Volvox carteri f. nagariensis]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Source: Volvox carteri f. nagariensis

Species: Volvox carteri

Genus: Volvox

Family: Volvocaceae

Order: Chlamydomonadales

Class: Chlorophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|2894308|emb|CAA11269.1| polyubiquitin [Nicotiana tabacum]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 167/287 (58%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIENVKQKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK+ ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVKQKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|384246185|gb|EIE19676.1| polyubiquitin [Coccomyxa subellipsoidea C-169]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIENVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVKSKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|302595808|sp|P0CH27.1|RL402_TRYCR RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=60S ribosomal protein L40; Flags: Precursor gi|162337|gb|AAA30271.1| ubiquitin precursor [Trypanosoma cruzi]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Source: Trypanosoma cruzi

Species: Trypanosoma cruzi

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|112983984|ref|NP_001036839.1| polyubiquitin [Bombyx mori] gi|4587236|dbj|BAA76676.1| polyubiquitin [Bombyx mori]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 395 LEVEASDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 453 LRGGMQIFVKTLTG-KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 511

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 512 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQD-KEGIPP 570

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           +   L   G+QL+N +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 571 DQQRLIFAGKQLENGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDT 630

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct: 631 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 677

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021992|ref|XP_002431426.1| ubiquitin, putative [Pediculus humanus corporis] gi|212516707|gb|EEB18688.1| ubiquitin, putative [Pediculus humanus corporis]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/288 (37%), Positives = 166/288 (57%), Gaps = 11/288 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 243 LEVEASDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 301 LRGGMQIFVKTLTG-KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 360 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQD-KEGIPP 418

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQII---RHVKHSIFVKLLNGRYIILEVAKFD 233
           +   L   G+QL++ +TL+ Y+I++   L ++   R  K  IFVK L G+ I LEV   D
Sbjct: 419 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGKMQIFVKTLTGKTITLEVEASD 478

Query: 234 TVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           T+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct: 479 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 526

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260600300|gb|ACX46987.1| ubiquitin [Guzmania wittmackii x Guzmania lingulata]

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/287 (37%), Positives = 166/287 (57%), Gaps = 10/287 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---N 57
           ++V+ ++ I+ +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   T
Sbjct: 73  LRGGMQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPS 176
           L   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-KEGIPP 190

Query: 177 EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDT 234
           E   L   G+QL++ +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT
Sbjct: 191 EQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 250

Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           + +VK K+  + G  PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct: 251 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Source: Guzmania wittmackii x Guzmania lingulata

Species: Guzmania wittmackii x Guzmania lingulata

Genus: Guzmania

Family: Bromeliaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2115663	457	UBQ10 "AT4G05320" [Arabidopsis	0.923	0.577	0.375	7.8e-39
TAIR|locus:2180434	382	UBQ4 "AT5G20620" [Arabidopsis	0.923	0.691	0.375	7.8e-39
TAIR|locus:2143548	306	UBQ3 "AT5G03240" [Arabidopsis	0.923	0.862	0.375	7.8e-39
TAIR|locus:2140200	305	UBQ14 "AT4G02890" [Arabidopsis	0.923	0.865	0.375	7.8e-39
FB|FBgn0086558	534	Ubi-p5E "Ubiquitin-5E" [Drosop	0.923	0.494	0.372	1.3e-38
ZFIN|ZDB-GENE-061110-88	533	ubc "ubiquitin C" [Danio rerio	0.923	0.495	0.372	1.3e-38
UNIPROTKB|P0CG68	533	UBC "Polyubiquitin-C" [Sus scr	0.923	0.495	0.372	1.3e-38
UNIPROTKB|F1NGE2	459	UBB "Polyubiquitin-B" [Gallus	0.923	0.575	0.370	1.3e-38
UNIPROTKB|Q96C32	305	UBC "Polyubiquitin-C" [Homo sa	0.923	0.865	0.372	1.3e-38
UNIPROTKB|P0CG62	305	UBB "Polyubiquitin-B" [Gallus	0.923	0.865	0.372	1.3e-38

TAIR|locus:2115663 UBQ10 "AT4G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 103/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:   178 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 237

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:   238 G-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 296

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   297 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAGKQLE 355

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   356 DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 415

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct:   416 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449

GO:0006464 "cellular protein modification process" evidence=ISS;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0007568 "aging" evidence=IEP

TAIR|locus:2180434 UBQ4 "AT5G20620" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 103/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:   102 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 161

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:   162 G-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 220

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   221 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAGKQLE 279

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   280 DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 339

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct:   340 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2143548 UBQ3 "AT5G03240" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 103/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:    26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 85

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:    86 G-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 144

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   145 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAGKQLE 203

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   204 DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 263

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct:   264 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

GO:0005622 "intracellular" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0010224 "response to UV-B" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

TAIR|locus:2140200 UBQ14 "AT4G02890" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 103/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:    26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 85

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:    86 G-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 144

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   145 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAGKQLE 203

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TLA Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   204 DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 263

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R LA Y I  ES ++L
Sbjct:   264 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

FB|FBgn0086558 Ubi-p5E "Ubiquitin-5E" [Drosophila melanogaster (taxid:7227)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 102/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:   254 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 313

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:   314 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLE 431

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   432 DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 491

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct:   492 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 525

GO:0005704 "polytene chromosome band" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-061110-88 ubc "ubiquitin C" [Danio rerio (taxid:7955)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 102/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:   254 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 313

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:   314 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLE 431

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   432 DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 491

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct:   492 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 525

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P0CG68 UBC "Polyubiquitin-C" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 102/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:   254 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 313

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:   314 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLE 431

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   432 DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 491

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct:   492 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 525

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

UNIPROTKB|F1NGE2 UBB "Polyubiquitin-B" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 102/275 (37%), Positives = 158/275 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:    27 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 86

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:    87 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 145

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   146 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLE 204

Query:   190 NLKTLAYYDIKENEVLQIIRHVK---HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREI 246
             + +TL+ Y+I++   L ++  ++     IFVK L G+ I LEV   DT+ +VK K+  + 
Sbjct:   205 DGRTLSDYNIQKESTLHLVLRLRGGMQQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 264

Query:   247 GQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
             G  PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct:   265 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 299

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|Q96C32 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 102/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:    26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 85

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:    86 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLE 203

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   204 DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 263

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct:   264 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 297

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|P0CG62 UBB "Polyubiquitin-B" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 102/274 (37%), Positives = 158/274 (57%)

Query:    16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
             + AK++++  I  D   L +AG+QLE+G T+ DY I   S +H      G M+++ KT +
Sbjct:    26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 85

Query:    71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
               KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   NI  E TL 
Sbjct:    86 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144

Query:   131 MISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ 189
             ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL+
Sbjct:   145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLE 203

Query:   190 NLKTLAYYDIKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
             + +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G
Sbjct:   204 DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 263

Query:   248 QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
               PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct:   264 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 297

GO:0005737 "cytoplasm" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

GO:0002218 "activation of innate immune response" evidence=TAS

GO:0002224 "toll-like receptor signaling pathway" evidence=TAS

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0007250 "activation of NF-kappaB-inducing kinase activity" evidence=TAS

GO:0019985 "translesion synthesis" evidence=TAS

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=TAS

GO:0034138 "toll-like receptor 3 signaling pathway" evidence=TAS

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=TAS

GO:0034146 "toll-like receptor 5 signaling pathway" evidence=TAS

GO:0034154 "toll-like receptor 7 signaling pathway" evidence=TAS

GO:0035419 "activation of MAPK activity involved in innate immune response" evidence=TAS

GO:0035681 "toll-like receptor 15 signaling pathway" evidence=TAS

GO:0035682 "toll-like receptor 21 signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CG54	UBB_CAVPO	No assigned EC number	0.3728	0.9685	0.8906	yes	no
P0CG62	UBB_CHICK	No assigned EC number	0.3728	0.9685	0.9081	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
smart00213	72	smart00213, UBQ, Ubiquitin homologues	4e-13
cd01803	76	cd01803, Ubiquitin, Ubiquitin	9e-13
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	7e-12
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-11
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	5e-09
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-07
cd01803	76	cd01803, Ubiquitin, Ubiquitin	4e-07
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	9e-07
cd01803	76	cd01803, Ubiquitin, Ubiquitin	2e-06
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	2e-06
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-06
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-06
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-05
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	5e-05
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	1e-04
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-04
cd01803	76	cd01803, Ubiquitin, Ubiquitin	2e-04
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	4e-04
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	6e-04
smart00213	72	smart00213, UBQ, Ubiquitin homologues	0.001
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	0.001
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	0.002
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	0.002
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	0.003
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	0.003
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	0.003
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	0.003

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 30/68 (44%), Positives = 44/68 (64%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + VK L+G+ I LEV   DTV ++K+K+    G  P+ QRL++K + LEDDR LA Y I
Sbjct: 2   ELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYGI 61

Query: 274 VNESIVNL 281
            + S ++L
Sbjct: 62  QDGSTIHL 69

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 62.2 bits (151), Expect = 9e-13
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 218 KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNES 277
           K L+G+ I LEV   DTV ++K+K+  + G   D QRL+F  + LEDD  L+ Y I + S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 278 IVNL 281
            ++L
Sbjct: 61  TLHL 64

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 25/66 (37%), Positives = 41/66 (62%)

Query: 216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVN 275
            VK L G+   LEV+  DTV ++K K+  + G  P+ QRL++  + L+DD+ L+ Y I +
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 276 ESIVNL 281
            S ++L
Sbjct: 61  GSTLHL 66

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 51.5 bits (124), Expect = 5e-09
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 70  SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL 129
            + KT  L+ + SDT+  +K  IE +EGIPV +  + + GK++E   TL    I +  TL
Sbjct: 3   LDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGSTL 62

Query: 130 QMIS 133
            ++ 
Sbjct: 63  HLVL 66

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           ++L  KT  + KT  L+   SDT+  +K  I    GIP  +  + Y GK++E   TL   
Sbjct: 1   IELTVKT-LDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADY 59

Query: 122 NINNEDTLQM 131
            I +  T+ +
Sbjct: 60  GIQDGSTIHL 69

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 1   MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59

Query: 122 NINNEDTLQMI 132
           NI  E TL ++
Sbjct: 60  NIQKESTLHLV 70

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVN 275
            VKL +G+ + L V    TV D+K+KL +++G  P+ QRL+   + L D   L  Y + +
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 276 ESIVNL 281
              + L
Sbjct: 61  GDELVL 66

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 15 LEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V  ++ + +LK +I  K  E I  D   L ++G+ LE+  T+ +YGI + S +H
Sbjct: 10 LEVDPSDTVSELKEKIEDK--EGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGSTLH 63

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ--APDSQRLVFKRQQLEDDRNLASY 271
            I  K L  +   +EV   DTV ++K+K+  E G    P+ Q+L++  + L+DD  L  Y
Sbjct: 2   KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEY 61

Query: 272 KIVNESIV 279
           KI  +  V
Sbjct: 62  KIDEKDFV 69

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ DD+  A YK+ 
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLE 62

Query: 275 NESIVNL 281
             S+++L
Sbjct: 63  GGSVLHL 69

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 70  SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL 129
              KTFEL+ +  DT+  +K  I  +EG+P  +  + Y GK+++   TL    I +  TL
Sbjct: 5   LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTL 64

Query: 130 QMI 132
            ++
Sbjct: 65  HLV 67

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            I VK L+ +     V +  TV D+K+K+  E+G   + QRL++  + L+DD  L+ YK+
Sbjct: 2   EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKV 61

Query: 274 VN 275
            +
Sbjct: 62  ED 63

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQ-RLVFKRQQLEDDRNLASYKIVN 275
           VKLL GR   L+V++ ++V  +K KL  E    P+ Q RL+FK + L DD+ L+ Y I  
Sbjct: 5   VKLLQGRECSLQVSEKESVSTLK-KLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGP 63

Query: 276 ESIVNL 281
            + +NL
Sbjct: 64  NAKLNL 69

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 2  KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          +VK ++ + +LK +I       I  +   L Y G+ LE+  T+ DYGI + S IH
Sbjct: 16 EVKPSDTVSELKEKIAEL--TGIPPEQQRLIYKGKVLEDDRTLADYGIQDGSTIH 68

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IKENEVLQII 208
           I++   L ++
Sbjct: 61  IQKESTLHLV 70

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 142 FVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIK 200
            V+T T  T +LEV    TV ++K  + + +  +P E   L   G+ L++ KTL+ Y I+
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAA-KEGVPPEQQRLIYAGKILKDDKTLSDYGIQ 59

Query: 201 ENEVLQIIR 209
           +   L ++ 
Sbjct: 60  DGSTLHLVL 68

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I +K L G+         +TV+ VK  L  + G      RL++  +Q+ DD  L+ YK+V
Sbjct: 3   ILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVV 62

Query: 275 NESIVNL 281
             S +++
Sbjct: 63  PGSTIHM 69

Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           E+ V+T    T+ LEV+ + TV ++K+ +      IP E   L   G+ L++ +TLA Y 
Sbjct: 2   ELTVKTLDGKTITLEVKPSDTVSELKEKIAE-LTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 199 IKENEVL 205
           I++   +
Sbjct: 61  IQDGSTI 67

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 8/56 (14%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPE---LFYAGQQLENGLTVIDYGIPNNSVI 55
          + +  K+E+L+ +I     +E+    PE   LFY G+Q+E+G T+ DY +  N +I
Sbjct: 19 LSRLTKVEELREKI-----QELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDII 69

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 2  KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          +V   + + +LK +I AK  E +  +   L YAG+ L++  T+ DYGI + S +H
Sbjct: 13 EVSPDDTVAELKAKIAAK--EGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLH 65

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIV 279
           LNG+ +   +   D V  +K K+  E G     Q+L ++   ++D  +LA Y + N +I+
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 280 NL 281
           +L
Sbjct: 65  HL 66

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 148 STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQI 207
            T+ LEV  + TV ++K+ +E  +  IP +   L   G+ L++  TL+ Y I++   L +
Sbjct: 6   KTITLEVDPSDTVSELKEKIE-DKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGSTLHL 64

Query: 208 IRHVK 212
           +  ++
Sbjct: 65  VLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 148 STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQI 207
            TV+L V    TV D+K+ +   ++ +P E   L   G+ L +  TL  Y +++ + L +
Sbjct: 8   KTVELLVPSGTTVADLKEKLAK-KLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVL 66

Query: 208 I 208
           +
Sbjct: 67  V 67

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRLVFKRQQLEDDRNLASYKI 273
           I +K  +G+ + ++V    T+  + +   ++ G       RL+F  ++L+ +  +A Y I
Sbjct: 3   IKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADYDI 62

Query: 274 VNESIV 279
            +   +
Sbjct: 63  EDGDTI 68

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           +F++ L G    L V+ F+TV  VK K+ R  G     Q L++   +LED+  L  Y I
Sbjct: 30  LFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.84
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.8
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.8
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.8
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.79
PTZ00044	76	ubiquitin; Provisional	99.78
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.77
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.76
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.76
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.76
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.75
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.75
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.75
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.74
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.74
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.73
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.73
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.73
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.73
PTZ00044	76	ubiquitin; Provisional	99.73
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.72
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.72
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.72
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.71
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.7
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.7
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.7
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.69
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.69
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.68
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.68
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.68
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.68
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.67
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.67
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.66
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.66
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.65
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.65
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.65
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.65
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.64
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.64
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.61
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.6
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.6
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.59
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.58
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.58
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.57
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.54
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.53
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.51
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.49
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.48
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.47
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.45
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.42
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.4
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.39
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.37
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.35
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.35
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.33
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.24
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.22
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.19
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.18
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.16
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.13
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.13
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.06
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	99.06
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	99.02
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.02
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.97
PLN02560	308	enoyl-CoA reductase	98.96
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.93
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.81
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.76
PLN02560	308	enoyl-CoA reductase	98.71
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.69
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.68
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.67
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.66
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.66
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.57
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.55
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.46
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.4
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.39
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.25
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.2
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.2
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.19
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	98.14
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.06
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.01
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.95
KOG4495	110	consensus RNA polymerase II transcription elongati	97.88
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.69
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.59
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.51
KOG4495	110	consensus RNA polymerase II transcription elongati	97.5
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.34
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.32
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.19
COG5417	81	Uncharacterized small protein [Function unknown]	97.11
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.09
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	97.05
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.03
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.03
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	96.85
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	96.83
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	96.74
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	96.69
KOG1639	297	consensus Steroid reductase required for elongatio	96.67
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.67
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.62
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.53
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	96.47
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.45
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.39
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.29
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.17
PF13019	162	Telomere_Sde2: Telomere stability and silencing	96.08
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	95.88
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	95.56
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	95.53
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	95.45
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	95.26
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	95.04
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	94.54
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	94.43
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.43
KOG1639	297	consensus Steroid reductase required for elongatio	94.4
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	94.34
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	94.3
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	94.29
COG5417	81	Uncharacterized small protein [Function unknown]	93.99
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	93.86
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	93.72
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	93.61
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	93.48
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	93.44
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	93.39
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	92.78
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	92.17
smart00455	70	RBD Raf-like Ras-binding domain.	91.99
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	91.34
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	91.02
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	90.88
PRK06437	67	hypothetical protein; Provisional	90.76
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	89.83
PF14453	57	ThiS-like: ThiS-like ubiquitin	89.5
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	88.97
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	88.51
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	87.88
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	87.68
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	87.41
KOG4583	391	consensus Membrane-associated ER protein involved	87.31
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	87.04
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	85.8
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	85.73
KOG4598	1203	consensus Putative ubiquitin-specific protease [Po	85.02
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	84.65
cd01818	77	TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo	84.6
KOG4583	391	consensus Membrane-associated ER protein involved	84.6
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	84.19
smart00455	70	RBD Raf-like Ras-binding domain.	83.78
KOG4261	1003	consensus Talin [Cytoskeleton]	83.74
PRK06437	67	hypothetical protein; Provisional	83.65
KOG0012	380	consensus DNA damage inducible protein [Replicatio	83.16
PRK08364	70	sulfur carrier protein ThiS; Provisional	82.37
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	82.34
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	81.31

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.84  E-value=2e-20  Score=141.21  Aligned_cols=95  Identities=23%  Similarity=0.285  Sum_probs=89.4

Q ss_pred             cccccCCCCCceeee---eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccc
Q 023198           43 TVIDYGIPNNSVIHN---DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD  119 (286)
Q Consensus        43 ~l~~y~i~~~s~l~l---~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~  119 (286)
                      .-..|++.+-+++|+   +++.|+|+|+++. |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~-G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~   84 (103)
T cd01802           6 EPPFFNEDNMGPFHYKLPFYDTMELFIETLT-GTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLN   84 (103)
T ss_pred             CCCccccCCcceeEEeeccCCCEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHH
Confidence            345688999999999   6779999999999 999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCeEEEEeecccc
Q 023198          120 VLNINNEDTLQMISVPKEL  138 (286)
Q Consensus       120 ~~~I~~~s~i~l~~~~~~~  138 (286)
                      +|+|.++++++++++++||
T Consensus        85 dy~I~~~stL~l~~~l~GG  103 (103)
T cd01802          85 DYNISEGCTLKLVLAMRGG  103 (103)
T ss_pred             HcCCCCCCEEEEEEecCCC
Confidence            9999999999999998775

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.80  E-value=2.3e-19  Score=127.89  Aligned_cols=74  Identities=16%  Similarity=0.308  Sum_probs=71.6

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      |+|+||+.. |++++++|++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|+|+++++++++++++
T Consensus         1 m~i~vk~~~-G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~   74 (74)
T cd01807           1 MFLTVKLLQ-GRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP   74 (74)
T ss_pred             CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence            789999999 99999999999999999999999999999999999999999999999999999999999998863

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.80  E-value=4.3e-19  Score=133.90  Aligned_cols=89  Identities=25%  Similarity=0.375  Sum_probs=83.6

Q ss_pred             ccccCCCceEEEEeeee--eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCC
Q 023198          196 YYDIKENEVLQIIRHVK--HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI  273 (286)
Q Consensus       196 ~y~i~~~~~i~l~~~~~--~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I  273 (286)
                      .+++.+-+++++.+++.  |+++||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I   88 (103)
T cd01802           9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI   88 (103)
T ss_pred             ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence            45677788999988865  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEcC
Q 023198          274 VNESIVNLTDL  284 (286)
Q Consensus       274 ~~~~~l~l~~~  284 (286)
                      ++|++|+++.+
T Consensus        89 ~~~stL~l~~~   99 (103)
T cd01802          89 SEGCTLKLVLA   99 (103)
T ss_pred             CCCCEEEEEEe
Confidence            99999999864

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.80  E-value=2.8e-19  Score=127.39  Aligned_cols=74  Identities=23%  Similarity=0.292  Sum_probs=70.6

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+||+   +++++++|++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|+|+++++++++++++||
T Consensus         1 mqi~vk~---~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRA---QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEEC---CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            7899997   4789999999999999999999999999999999999999999999999999999999999998875

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.79  E-value=3.7e-19  Score=126.76  Aligned_cols=73  Identities=32%  Similarity=0.443  Sum_probs=70.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |+|+||+.+|+++++++++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||+++++|+++.|.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999875

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>PTZ00044 ubiquitin; Provisional

Probab=99.78  E-value=1.4e-18  Score=124.43  Aligned_cols=76  Identities=21%  Similarity=0.378  Sum_probs=73.6

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+||+++ |+++++++++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++++||
T Consensus         1 m~i~vk~~~-G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLT-GKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999998764

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=2.9e-20  Score=135.54  Aligned_cols=76  Identities=36%  Similarity=0.505  Sum_probs=74.3

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+++++++. |++++++++|++||.++|++|++++|+|+++|+|+|+|++|+|+.|+++|||+..+|++++++++||
T Consensus         1 ~~~~~~~~~-GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLT-GKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEee-CceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence            578999999 9999999999999999999999999999999999999999999999999999999999999999998

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.76  E-value=2e-18  Score=122.96  Aligned_cols=74  Identities=12%  Similarity=0.168  Sum_probs=71.3

Q ss_pred             EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+||++. |+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++++++++.+++.||
T Consensus         1 i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDK-GRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCC-CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            6899999 9999999999999999999999999999999999999999999999999999999999999988764

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=3.6e-19  Score=139.41  Aligned_cols=76  Identities=34%  Similarity=0.504  Sum_probs=74.5

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|||++++ |+++++++.+++||..+|++||+.+|||+++|||+|+|++|+|+++|+||+|+..++++++++++||
T Consensus         1 m~ifVk~l~-~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg   76 (156)
T KOG0004|consen    1 MQIFVKTLT-GKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (156)
T ss_pred             Cccchhhcc-ccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence            689999999 9999999999999999999999999999999999999999999999999999999999999999987

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.76  E-value=3.1e-18  Score=122.88  Aligned_cols=74  Identities=20%  Similarity=0.229  Sum_probs=70.5

Q ss_pred             eEEEEEeCCCCcE-EEEE-EcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           62 MKLYFKTPSNEKT-FELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        62 ~~i~Vk~~~~g~~-~~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      |+|+||++. |++ ++++ +.+++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++++++.
T Consensus         1 M~I~vk~~~-G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMD-GKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCC-CCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            799999999 997 6895 8999999999999999999999999999999999999999999999999999998874

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.75  E-value=3e-18  Score=122.09  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=66.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+  ++++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++++|||++.|
T Consensus         1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01793           1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGR   70 (74)
T ss_pred             CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence            6789987  478999999999999999999999999999999999999999999999999999999999875

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.75  E-value=3.3e-18  Score=120.56  Aligned_cols=70  Identities=19%  Similarity=0.395  Sum_probs=67.9

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+||++.|+++.+++++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|+|++|++||++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999876

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.75  E-value=4.2e-18  Score=122.21  Aligned_cols=73  Identities=22%  Similarity=0.438  Sum_probs=69.3

Q ss_pred             eEEEEEeecceE-EEee-cCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRY-IILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~-~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |+|+||+.+|++ +.++ +.+++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+++.|.
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~   75 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ   75 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence            689999999997 6895 899999999999999999999999999999999999999999999999999999874

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.74  E-value=6.3e-18  Score=119.55  Aligned_cols=70  Identities=19%  Similarity=0.220  Sum_probs=67.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      |.+.|++..|+.+.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||-
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence            6789999999999999999999999999999999999999999999999999999999999999999984

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.7e-18  Score=112.71  Aligned_cols=70  Identities=29%  Similarity=0.436  Sum_probs=67.6

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      |.|.|++++ |+.+.++++|+|+|+.+|++|++++||||.+|||+|+|+++.|+.|-++|++..||.+|++
T Consensus         1 m~iKvktLt-~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeec-cceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            578999999 9999999999999999999999999999999999999999999999999999999999874

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.73  E-value=6.3e-18  Score=118.76  Aligned_cols=68  Identities=31%  Similarity=0.393  Sum_probs=65.9

Q ss_pred             EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      .||..+|+++.+++++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|.+|+|++|++||++.
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            57889999999999999999999999999999999999999999999999999999999999999975

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.73  E-value=1.5e-17  Score=118.98  Aligned_cols=76  Identities=37%  Similarity=0.513  Sum_probs=73.6

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+|++.. |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++++||
T Consensus         1 m~i~v~~~~-g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCC-CCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999998775

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.73  E-value=7.2e-18  Score=120.09  Aligned_cols=70  Identities=26%  Similarity=0.301  Sum_probs=67.9

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+||++.|+++++++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||+++++|++..|
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR   70 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence            5789999999999999999999999999999999999999999999999999999999999999999876

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.73  E-value=2.3e-17  Score=118.02  Aligned_cols=76  Identities=25%  Similarity=0.371  Sum_probs=73.3

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+|++.+ |+++.+++.+++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++++++++.+||
T Consensus         1 m~i~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999988764

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>PTZ00044 ubiquitin; Provisional

Probab=99.73  E-value=1.2e-17  Score=119.58  Aligned_cols=72  Identities=28%  Similarity=0.403  Sum_probs=69.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++++|++|++..+
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~   72 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ   72 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence            679999999999999999999999999999999999999999999999999999999999999999999874

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.72  E-value=2e-17  Score=117.01  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=68.5

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      |.|+|++.. |+.+.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.+|++|||.+|++++|..
T Consensus         2 ~~i~vkt~~-Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           2 IEVVCNDRL-GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             EEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            789999999 99999999999999999999999999999999999999999999999999999999999863

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.72  E-value=1.9e-17  Score=116.59  Aligned_cols=70  Identities=19%  Similarity=0.467  Sum_probs=67.4

Q ss_pred             EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      |+||++. |+++++++++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++|+++++.|
T Consensus         1 i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNT-GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCC-CCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            5899999 999999999999999999999999999999999999999999999999999999999999754

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.72  E-value=2.9e-17  Score=118.07  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=73.4

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ  139 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~  139 (286)
                      .|+|+|++.. |+.+++++++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|||.++++++++..+++|+
T Consensus         1 ~m~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~   77 (78)
T cd01804           1 PMNLNIHSTT-GTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL   77 (78)
T ss_pred             CeEEEEEECC-CCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence            4899999999 99999999999999999999999999999999999999999999 99999999999999999888763

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.71  E-value=2.4e-17  Score=115.76  Aligned_cols=68  Identities=21%  Similarity=0.342  Sum_probs=65.5

Q ss_pred             EEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           65 YFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        65 ~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      .||.++ |+++++++++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++++
T Consensus         2 ~vk~~~-G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLST-GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCC-CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            578888 99999999999999999999999999999999999999999999999999999999999875

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.70  E-value=4.9e-17  Score=115.06  Aligned_cols=72  Identities=31%  Similarity=0.455  Sum_probs=69.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.++||+++|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++||+++|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999875

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1e-17  Score=109.11  Aligned_cols=70  Identities=30%  Similarity=0.553  Sum_probs=67.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      |.|.||+++|+.+.++++|+++|+.+|+.|++++||||.+|||+|.|+.|.|+.|-.+|++..||++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            5688999999999999999999999999999999999999999999999999999999999999999984

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.70  E-value=1.1e-16  Score=114.93  Aligned_cols=73  Identities=29%  Similarity=0.514  Sum_probs=70.2

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCC--CCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGI--PVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      |+|+|++.+ |+++++++++++||++||++|++.+|+  |+++|+|+|+|+.|+|+.+|++|++.+|++++++++.
T Consensus         1 m~i~vk~~~-g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLK-QQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence            789999999 999999999999999999999999999  9999999999999999999999999999999988764

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.69  E-value=8.8e-17  Score=115.37  Aligned_cols=72  Identities=32%  Similarity=0.449  Sum_probs=69.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCC--CCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ--APDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.++|++.+|+++.+++++++||++||++|++++|+  |+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~   74 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS   74 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence            679999999999999999999999999999999999  999999999999999999999999999999998764

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.69  E-value=1.1e-16  Score=114.55  Aligned_cols=72  Identities=31%  Similarity=0.514  Sum_probs=69.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|.|++.+|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|.|+.+|++|++++|++||++.+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~   72 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA   72 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999875

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.68  E-value=1.1e-16  Score=114.41  Aligned_cols=72  Identities=46%  Similarity=0.657  Sum_probs=69.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++++|++|++..+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~   72 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            679999999999999999999999999999999999999999999999999999999999999999999876

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.68  E-value=1.8e-16  Score=112.14  Aligned_cols=72  Identities=21%  Similarity=0.382  Sum_probs=69.2

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      |+|+||++. |+++++++++++||+++|++|++.+|+|++.|+|+|+|+.|+|+.+|++|++++|++++++.+
T Consensus         1 i~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLD-SQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            689999999 999999999999999999999999999999999999999999999999999999999998753

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.68  E-value=1.2e-16  Score=112.94  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=67.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.|+||+.+|+ ..+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++|
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            36889999997 489999999999999999999999999999999999999999999999999999999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.68  E-value=1.2e-16  Score=114.88  Aligned_cols=70  Identities=16%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |+|+||+..|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|||++|++|+++.
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~   71 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVP   71 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEe
Confidence            78999999999999999999999999999999999999999999999999999 99999999999999975

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.67  E-value=1.4e-16  Score=115.18  Aligned_cols=72  Identities=28%  Similarity=0.314  Sum_probs=69.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEE--EecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL--VFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L--~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+++||+++|+++.+++++++||++||++|++++|+|+++|+|  +|+|+.|+|+.+|++|||++|++|+++.+
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence            6899999999999999999999999999999999999999999  89999999999999999999999999875

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=7e-18  Score=123.11  Aligned_cols=72  Identities=47%  Similarity=0.660  Sum_probs=68.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +++++++++|+++.++++|++||..+|++|+.++|||+++|+|+|+|+.|+|+.||++|||+..||||+.++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r   72 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence            468899999999999999999999999999999999999999999999999999999999999999998754

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.66  E-value=2.1e-16  Score=111.55  Aligned_cols=68  Identities=25%  Similarity=0.284  Sum_probs=64.3

Q ss_pred             EEEEee-cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC-CccccCCCCCCCEEEEE
Q 023198          215 IFVKLL-NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKIVNESIVNLT  282 (286)
Q Consensus       215 i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~-~tL~~y~I~~~~~l~l~  282 (286)
                      ++||+. +|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++|++|++.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            468888 999999999999999999999999999999999999999999987 68999999999999984

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.66  E-value=4e-16  Score=109.49  Aligned_cols=68  Identities=38%  Similarity=0.607  Sum_probs=65.3

Q ss_pred             EeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          218 KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       218 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |+++|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.||.+|||++|++|++..+.
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            57899999999999999999999999999999999999999999999999999999999999998763

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.65  E-value=3.2e-16  Score=113.23  Aligned_cols=73  Identities=15%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEE--EECCEEeeccccccccccCCCCeEEEEeec
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDI--YYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L--~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      |+|+|++.. |+++.+++++++||++||++|++..|+|+++|+|  +|+|+.|+|+.+|++||+.+|++++++++.
T Consensus         3 ~~i~Vk~~~-G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLG-GNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCC-CCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            899999999 9999999999999999999999999999999999  899999999999999999999999998874

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.65  E-value=5.5e-16  Score=109.46  Aligned_cols=71  Identities=20%  Similarity=0.316  Sum_probs=66.8

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      +.|+|++.. |+ .++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++++++++
T Consensus         1 ~~i~vk~~~-g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPK-DK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCC-CC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            468999998 87 489999999999999999999999999999999999999999999999999999999864

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.65  E-value=7.5e-16  Score=108.09  Aligned_cols=69  Identities=32%  Similarity=0.513  Sum_probs=65.8

Q ss_pred             EeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           67 KTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        67 k~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      |+++ |+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.++++|+++++++
T Consensus         1 k~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLS-GKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETT-SEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCCC-CcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence            5677 99999999999999999999999999999999999999999999999999999999999998763

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=6.4e-17  Score=126.84  Aligned_cols=72  Identities=46%  Similarity=0.653  Sum_probs=69.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+|++++|+++.+++.+++||..+|++|++++|||+++|||+|.|+.|+|++||+||+|+..+|||++++
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~   72 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence            579999999999999999999999999999999999999999999999999999999999999999999875

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.64  E-value=6.9e-16  Score=108.86  Aligned_cols=68  Identities=25%  Similarity=0.418  Sum_probs=63.9

Q ss_pred             EEEEeC-CCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc-ccccccccCCCCeEEEE
Q 023198           64 LYFKTP-SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY-ITLDVLNINNEDTLQMI  132 (286)
Q Consensus        64 i~Vk~~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~~~I~~~s~i~l~  132 (286)
                      |+|++. . |+++.+++++++||+++|++|++++|+|+++|+|+|+|++|+|+ .+|++|+|++++++++.
T Consensus         1 l~v~~~~~-g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARS-ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCC-CCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            478999 7 99999999999999999999999999999999999999999987 68999999999999873

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.64  E-value=8e-16  Score=110.07  Aligned_cols=67  Identities=18%  Similarity=0.296  Sum_probs=65.2

Q ss_pred             CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++++++++|
T Consensus         7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg   73 (76)
T cd01800           7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG   73 (76)
T ss_pred             CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999998775

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.61  E-value=1.7e-15  Score=107.77  Aligned_cols=71  Identities=23%  Similarity=0.229  Sum_probs=64.2

Q ss_pred             eEEEEEeecceE--EEeecCCcCcHHHHHHHHHHHhC--CCCCceEEEecCeEcCCCCccccCC--CCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRY--IILEVAKFDTVRDVKDKLFREIG--QAPDSQRLVFKRQQLEDDRNLASYK--IVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~--~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~g~~L~d~~tL~~y~--I~~~~~l~l~~  283 (286)
                      +.++||+++|++  +.+++++++||++||++|++..+  .|+++|||+|+|+.|+|+.||++|.  ++.|.|+||+.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            678999999998  56666899999999999999875  5579999999999999999999996  99999999984

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.60  E-value=2.9e-15  Score=105.68  Aligned_cols=69  Identities=28%  Similarity=0.296  Sum_probs=65.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +.|.||+. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++|||++|++|+++
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence            46889985 8999999999999999999999999999999999999999999999999999999999986

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.60  E-value=2.2e-15  Score=107.76  Aligned_cols=65  Identities=28%  Similarity=0.427  Sum_probs=62.7

Q ss_pred             ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~   69 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK   69 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe
Confidence            47899999999999999999999999999999999999999999999999999999999999865

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.59  E-value=4.6e-15  Score=105.34  Aligned_cols=69  Identities=25%  Similarity=0.320  Sum_probs=64.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe---cCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF---KRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +.|.|| ++|+++.+++++++||++||++|++++|+|+++|+|+|   +|+.+.|+.+|++|+|++|+.|+|+
T Consensus         1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            357788 48899999999999999999999999999999999996   9999999999999999999999986

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.58  E-value=1.2e-15  Score=107.05  Aligned_cols=54  Identities=28%  Similarity=0.379  Sum_probs=49.8

Q ss_pred             CcchHHHHHHHHhhchhcCCC-CCCCeEEecCcccccCCcccccCCCCCceeeee
Q 023198            5 KTEKIEKLKLRIHAKVEEEIL-EDLPELFYAGQQLENGLTVIDYGIPNNSVIHND   58 (286)
Q Consensus         5 ~~dtv~~vK~~i~~~~~~~i~-~~~q~l~~~g~~L~d~~~l~~y~i~~~s~l~l~   58 (286)
                      .++||.++|++|++++++|+| +++|+|+|+|++|+|++||++|+|..|++|||+
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv   73 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHIL   73 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEE
Confidence            579999999999999555675 999999999999999999999999999999984

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.58  E-value=1.5e-14  Score=106.09  Aligned_cols=79  Identities=18%  Similarity=0.248  Sum_probs=75.5

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ...|.|+|+..+ |+.+.++|.+++|++.||++++++.|+|+++|+|+|+|++|+++.|+++|++.++++|++++++.||
T Consensus         9 ~~~i~I~v~~~~-g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763           9 SEHINLKVKGQD-GNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CCeEEEEEECCC-CCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            347899999998 9999999999999999999999999999999999999999999999999999999999999998875

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.57  E-value=9e-15  Score=104.11  Aligned_cols=71  Identities=15%  Similarity=0.205  Sum_probs=63.2

Q ss_pred             eEEEEEeCCCCcEE--EEEEcCCccHHHHHHHHHhhhC--CCCccEEEEECCEEeeccccccccc--cCCCCeEEEEe
Q 023198           62 MKLYFKTPSNEKTF--ELKANRSDTIENIKFIIEVREG--IPVHEYDIYYGGKLIESYITLDVLN--INNEDTLQMIS  133 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~--~l~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~D~~tL~~~~--I~~~s~i~l~~  133 (286)
                      +.++||+++ |+++  .+++++++||+++|++|++..+  .|+++|||+|+|+.|+|+.||++|.  +.++.++||+.
T Consensus         2 i~l~IK~~~-~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPN-QKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCC-CCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            678999999 9984  5555899999999999999874  5579999999999999999999996  99999999985

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.54  E-value=2.7e-14  Score=101.36  Aligned_cols=69  Identities=16%  Similarity=0.278  Sum_probs=64.5

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE---CCEEeeccccccccccCCCCeEEEE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY---GGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      |.|.|++.  |+++.+++++++||++||++|++.+|+|+++|+|+|   .|+.+.|+.+|++|+|.+|+.+.|+
T Consensus         1 ~~i~vk~~--g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKWG--GQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEEC--CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            46788875  799999999999999999999999999999999996   8999999999999999999999886

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.53  E-value=2.7e-14  Score=100.65  Aligned_cols=69  Identities=14%  Similarity=0.320  Sum_probs=65.3

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      ++|+||+.  |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++++++
T Consensus         1 i~i~vk~~--g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG--GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC--CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence            47889985  7999999999999999999999999999999999999999999999999999999999876

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.51  E-value=8.4e-14  Score=102.15  Aligned_cols=72  Identities=13%  Similarity=0.256  Sum_probs=69.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|+|++.+|+++.++|.+++|++.||++++++.|+|+++|+|+|+|+.|+++.|+.+|++++|++|++..+
T Consensus        12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~   83 (87)
T cd01763          12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLE   83 (87)
T ss_pred             EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence            889999999999999999999999999999999999999999999999999999999999999999999764

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.49  E-value=3.2e-14  Score=99.86  Aligned_cols=55  Identities=20%  Similarity=0.279  Sum_probs=50.4

Q ss_pred             CCcCcHHHHHHHHHHHh--CCC-CCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          230 AKFDTVRDVKDKLFREI--GQA-PDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       230 ~~~~tV~~lK~~I~~~~--gi~-~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.++||++||++|+++.  |++ +++|||+|+|+.|+|++||++|||++|++|||+..
T Consensus        18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~   75 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK   75 (75)
T ss_pred             CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence            35889999999999995  575 99999999999999999999999999999999863

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.48  E-value=9.3e-14  Score=98.75  Aligned_cols=65  Identities=32%  Similarity=0.255  Sum_probs=59.4

Q ss_pred             EeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcC-CCCccccCCCC-CCCEEEEEc
Q 023198          218 KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE-DDRNLASYKIV-NESIVNLTD  283 (286)
Q Consensus       218 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~-d~~tL~~y~I~-~~~~l~l~~  283 (286)
                      |...|.++++++++++||++||.+|++++|+|+++|+| |+|+.|. |+.+|++||++ +|++++|..
T Consensus         8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            45578899999999999999999999999999999999 9999885 77999999998 889999853

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.47  E-value=1.4e-13  Score=94.72  Aligned_cols=64  Identities=42%  Similarity=0.579  Sum_probs=60.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNES  277 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~  277 (286)
                      |+|+||+.+ +++.+++++++||++||++|+.++|+|++.|+|+|+|+.|.|+.+|++||+++|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            578999988 7899999999999999999999999999999999999999999999999999885

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.45  E-value=2.7e-13  Score=96.40  Aligned_cols=64  Identities=19%  Similarity=0.105  Sum_probs=58.4

Q ss_pred             eCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEee-ccccccccccC-CCCeEEEEe
Q 023198           68 TPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIE-SYITLDVLNIN-NEDTLQMIS  133 (286)
Q Consensus        68 ~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~~~I~-~~s~i~l~~  133 (286)
                      ... |.++++++++++||++||++|++++|+|+++|+| |+|+.|. |+.+|++|++. +|+++++.+
T Consensus         9 ~~~-~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           9 QSH-TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             ccC-CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            344 8999999999999999999999999999999999 9999985 77999999999 889998763

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.42  E-value=5.5e-13  Score=91.67  Aligned_cols=64  Identities=34%  Similarity=0.460  Sum_probs=60.5

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCC
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNED  127 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s  127 (286)
                      |+|+|++.+  +++.+++++++||++||++|+..+|+|+++|+|+|+|+.|.|+.+|++|++.+|+
T Consensus         1 ~~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD--GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC--ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            689999986  5899999999999999999999999999999999999999999999999999875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.40  E-value=6.2e-13  Score=121.90  Aligned_cols=72  Identities=24%  Similarity=0.389  Sum_probs=69.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhC---CCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG---QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||++.|+++.++|++++||.+||++|++..|   +|+++|+|+|+|+.|+|+++|.+|+|+++++|+++..
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~   75 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS   75 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence            68999999999999999999999999999999999   9999999999999999999999999999999998765

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.39  E-value=8.3e-13  Score=121.10  Aligned_cols=73  Identities=26%  Similarity=0.476  Sum_probs=70.2

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhC---CCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG---IPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      |+|+||++. |+++.++|++++||.+||++|+...|   +|+++|+|+|+|+.|+|+.+|++|+|+++++|++++..
T Consensus         1 MkItVKtl~-g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQ-QQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCC-CCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            789999999 99999999999999999999999998   99999999999999999999999999999999988775

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.37  E-value=7.3e-13  Score=99.26  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=65.2

Q ss_pred             ceEEEEEeCCCCcEE-EEEEcCCccHHHHHHHHHhhh-----CCC--CccEEEEECCEEeeccccccccc------cCCC
Q 023198           61 VMKLYFKTPSNEKTF-ELKANRSDTIENIKFIIEVRE-----GIP--VHEYDIYYGGKLIESYITLDVLN------INNE  126 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~-~l~v~~~~tV~~lK~~I~~~~-----gip--~~~q~L~~~g~~L~D~~tL~~~~------I~~~  126 (286)
                      .+.|.+|... |..+ +..+.+++||++||++|++.+     |+|  +++|+|+|+|+.|+|++||++|+      +...
T Consensus         4 ~~e~kfrl~d-g~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~   82 (113)
T cd01814           4 QIEIKFRLYD-GSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV   82 (113)
T ss_pred             cEEEEEEccC-CCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence            4667888888 7555 677889999999999999544     556  99999999999999999999999      7778


Q ss_pred             CeEEEEeeccc
Q 023198          127 DTLQMISVPKE  137 (286)
Q Consensus       127 s~i~l~~~~~~  137 (286)
                      +|+|+++++..
T Consensus        83 ~TmHvvlr~~~   93 (113)
T cd01814          83 ITMHVVVQPPL   93 (113)
T ss_pred             eEEEEEecCCC
Confidence            99999998764

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.35  E-value=6.5e-13  Score=96.54  Aligned_cols=55  Identities=22%  Similarity=0.216  Sum_probs=52.0

Q ss_pred             CCCCCcchHHHHHHHHhhchhcCCCCCCCeEEecCccccc-CCcccccCCCCCceeee
Q 023198            1 MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLEN-GLTVIDYGIPNNSVIHN   57 (286)
Q Consensus         1 l~v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~L~d-~~~l~~y~i~~~s~l~l   57 (286)
                      |+|++++||+++|.+|+++  +++||++|+|+|+|+.|.| .+||++|+|.++|+|+|
T Consensus        19 L~V~~~~TVg~LK~lImQ~--f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~L   74 (107)
T cd01795          19 LLVSANQTLKELKIQIMHA--FSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILL   74 (107)
T ss_pred             EEeCccccHHHHHHHHHHH--hcCCcccceeeecCceeccCCccHHhcCCCCCCEEEE
Confidence            5799999999999999999  9999999999999999955 58999999999999998

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.35  E-value=1.1e-12  Score=98.35  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=63.0

Q ss_pred             eEEEEEeecceEE-EeecCCcCcHHHHHHHHH-----HHhCCC--CCceEEEecCeEcCCCCccccCC------CCCCCE
Q 023198          213 HSIFVKLLNGRYI-ILEVAKFDTVRDVKDKLF-----REIGQA--PDSQRLVFKRQQLEDDRNLASYK------IVNESI  278 (286)
Q Consensus       213 ~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~-----~~~gi~--~~~q~L~~~g~~L~d~~tL~~y~------I~~~~~  278 (286)
                      +.|.++..+|..+ ...+.+++||++||++|+     +++|+|  +++|+|+|+|+.|+|++||++|+      +....|
T Consensus         5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T   84 (113)
T cd01814           5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT   84 (113)
T ss_pred             EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence            4566677788665 678889999999999999     455566  99999999999999999999999      788899


Q ss_pred             EEEEcCC
Q 023198          279 VNLTDLG  285 (286)
Q Consensus       279 l~l~~~~  285 (286)
                      +|++.|.
T Consensus        85 mHvvlr~   91 (113)
T cd01814          85 MHVVVQP   91 (113)
T ss_pred             EEEEecC
Confidence            9999885

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.33  E-value=4.2e-12  Score=88.56  Aligned_cols=67  Identities=37%  Similarity=0.567  Sum_probs=63.6

Q ss_pred             EEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       217 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |+..+|+.+.+.++++.||++||++|+...|+|++.|+|+|+|+.|+|+.+|.+|++.+|++|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            5667899999999999999999999999999999999999999999999999999999999999875

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.24  E-value=2e-11  Score=88.82  Aligned_cols=63  Identities=16%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeec-cccccccccCCCCeEEEEeec
Q 023198           73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIES-YITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D-~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      +..+++|++++||.+||..|+..+++||.+|+|+|+|+.|.| .+||++||+..+|++.|.++.
T Consensus        15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            456788999999999999999999999999999999999965 679999999999999987653

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.22  E-value=4.2e-11  Score=83.43  Aligned_cols=67  Identities=33%  Similarity=0.549  Sum_probs=62.9

Q ss_pred             EEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           66 FKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        66 Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      |+..+ |+.+.+++.++.||++||++|+...|+|+++|+|+|+|+.|+|..+|++|++.+++++++..
T Consensus         2 v~~~~-~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLT-GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccC-CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            56677 99999999999999999999999999999999999999999999999999999999998763

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.19  E-value=8.5e-11  Score=82.99  Aligned_cols=70  Identities=23%  Similarity=0.379  Sum_probs=65.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC-CceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      |++.|+..+|+.+.+.|.+++++..|++..+++.|+|+ +.++|+|.|+.|+++.|+++|++++|++|++.
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence            57889999999999999999999999999999999999 99999999999999999999999999999985

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.18  E-value=2.9e-11  Score=111.42  Aligned_cols=71  Identities=25%  Similarity=0.336  Sum_probs=67.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.|.||+.+. .+.+.|....||.+||+.|+.++++++++++|+|.||.|+|+.||..|||++|.||||+..
T Consensus        16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik   86 (493)
T KOG0010|consen   16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIK   86 (493)
T ss_pred             eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEec
Confidence            6788999887 7889999999999999999999999999999999999999999999999999999999865

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.16  E-value=6.2e-11  Score=104.06  Aligned_cols=74  Identities=24%  Similarity=0.442  Sum_probs=70.6

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhC--CCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG--IPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      |.|+||++. |.+|++++.|++||.++|++|+...|  .|+.+|+|+|+|+.|.|+.++.+|++.+++.+.+++...
T Consensus         1 m~lt~KtL~-q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLK-QQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeecc-CceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            689999999 99999999999999999999999998  999999999999999999999999999999888887755

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.13  E-value=7.7e-11  Score=108.67  Aligned_cols=74  Identities=20%  Similarity=0.448  Sum_probs=70.1

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      .++|.||+.+ + .+.+.|..+.||.++|+.|....++|+++++|||+||.|+|+.||..|||++|.||||+.+..
T Consensus        15 ~irV~Vkt~~-d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   15 LIRVTVKTPK-D-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eeEEEEecCC-c-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            5789999998 5 889999999999999999999999999999999999999999999999999999999998764

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.13  E-value=3.4e-10  Score=79.87  Aligned_cols=70  Identities=20%  Similarity=0.370  Sum_probs=65.4

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC-ccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV-HEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      |+|+|+..+ |+.+.+.|.+++++..|++.+.++.|+|+ +..+|+|+|+.|+++.|+++|++.+|++|++.
T Consensus         1 I~i~v~~~~-~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen    1 ITIKVRSQD-GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEETT-SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred             CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence            678999998 99999999999999999999999999999 99999999999999999999999999999875

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.06  E-value=2.5e-10  Score=100.33  Aligned_cols=71  Identities=27%  Similarity=0.419  Sum_probs=67.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhC--CCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG--QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |.++||++.|.+|++++.|++||.++|++|+...|  +|+++|+|+|+|+.|.|+.|+.+|+|+.++.|-+++
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMl   73 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVML   73 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEE
Confidence            57899999999999999999999999999999999  999999999999999999999999999888776654

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.06  E-value=1.4e-09  Score=76.04  Aligned_cols=72  Identities=38%  Similarity=0.530  Sum_probs=67.9

Q ss_pred             EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      +++++.. |+++++++.++++|+.+|.+|+...|+|+++|++.+.|+.|+|+.++++|+|..++++++..+++
T Consensus         2 ~~~~~~~-gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    2 IFVKTLD-GKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             EEEEecC-CCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence            5677877 99999999999999999999999999999999999999999999999999999999999987765

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.02  E-value=1.4e-09  Score=76.02  Aligned_cols=70  Identities=44%  Similarity=0.591  Sum_probs=66.0

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +++++..|+++.+++.++.+++.+|.+|+...|+|++.|++.++|+.|+|+.++.+|+|..++++++..+
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~   71 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS   71 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence            4667788999999999999999999999999999999999999999999999999999999999998764

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.02  E-value=2.2e-09  Score=78.07  Aligned_cols=71  Identities=23%  Similarity=0.332  Sum_probs=58.5

Q ss_pred             EEEEEee-cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEE-EecCe-----Ec-CCCCccccCCCCCCCEEEEEcC
Q 023198          214 SIFVKLL-NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL-VFKRQ-----QL-EDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       214 ~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L-~~~g~-----~L-~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .+.|+.. +......+++++.||++||++++..+|+|+..|+| +|.|.     .| +|..+|.+|++++|++||+.+.
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~   81 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV   81 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence            3444442 23445567999999999999999999999999999 47887     45 6888999999999999999874

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.97  E-value=2e-09  Score=80.47  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=61.9

Q ss_pred             EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccccccc-------CCCCeEEEEeecc
Q 023198           64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNI-------NNEDTLQMISVPK  136 (286)
Q Consensus        64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I-------~~~s~i~l~~~~~  136 (286)
                      +|++...+.-++.+++.++.||.+||++|+.....||+.|+|+-.+..|+|++||+|||+       +..+++-|.++..
T Consensus         3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~   82 (119)
T cd01788           3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSS   82 (119)
T ss_pred             eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecC
Confidence            344433324688999999999999999999999999999999977788999999999999       6688888887753

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PLN02560 enoyl-CoA reductase

Probab=98.96  E-value=1.8e-09  Score=96.90  Aligned_cols=73  Identities=32%  Similarity=0.438  Sum_probs=66.0

Q ss_pred             eEEEEEeecceEE---EeecCCcCcHHHHHHHHHHHhCC-CCCceEEEec-------CeEcCCCCccccCCCCCCCEEEE
Q 023198          213 HSIFVKLLNGRYI---ILEVAKFDTVRDVKDKLFREIGQ-APDSQRLVFK-------RQQLEDDRNLASYKIVNESIVNL  281 (286)
Q Consensus       213 ~~i~vk~~~g~~~---~l~v~~~~tV~~lK~~I~~~~gi-~~~~q~L~~~-------g~~L~d~~tL~~y~I~~~~~l~l  281 (286)
                      |.|.|+..+|+.+   +++++++.||++||++|+++.++ ++++|||.+.       |+.|+|+++|++||+++|++|++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            5678888889887   79999999999999999999986 8999999972       34889999999999999999999


Q ss_pred             EcCC
Q 023198          282 TDLG  285 (286)
Q Consensus       282 ~~~~  285 (286)
                      -+.|
T Consensus        81 kDLG   84 (308)
T PLN02560         81 KDLG   84 (308)
T ss_pred             EeCC
Confidence            9988

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.93  E-value=7.7e-09  Score=75.22  Aligned_cols=71  Identities=18%  Similarity=0.339  Sum_probs=58.2

Q ss_pred             EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEE-EECCE-----Ee-eccccccccccCCCCeEEEEe
Q 023198           63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDI-YYGGK-----LI-ESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g~-----~L-~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      .|+|............+.++.||.+||++++..+|+||..|+| +|.|+     .| +|..+|++|++.+|.+||++-
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            4555554314455566999999999999999999999999999 58887     45 678899999999999999864

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.81  E-value=1.6e-08  Score=74.02  Aligned_cols=71  Identities=31%  Similarity=0.449  Sum_probs=55.9

Q ss_pred             EEEEEeecc--eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec----C---eEc-CCCCccccCCCCCCCEEEEEc
Q 023198          214 SIFVKLLNG--RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK----R---QQL-EDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       214 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~----g---~~L-~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      .+.|.....  ......++++.||++||.+++..+|+|++.|+|.+.    +   ..+ +|..+|.+||+++|.+||+.+
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D   82 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD   82 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence            455554443  377889999999999999999999999999999765    2   223 478899999999999999986


Q ss_pred             C
Q 023198          284 L  284 (286)
Q Consensus       284 ~  284 (286)
                      .
T Consensus        83 ~   83 (87)
T PF14560_consen   83 T   83 (87)
T ss_dssp             -
T ss_pred             C
Confidence            4

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.76  E-value=2.1e-08  Score=75.01  Aligned_cols=69  Identities=22%  Similarity=0.370  Sum_probs=59.6

Q ss_pred             EEeecCC-C-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCcccccccc-------CCCceEEEEee
Q 023198          141 IFVQTPT-S-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI-------KENEVLQIIRH  210 (286)
Q Consensus       141 I~V~~~~-g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i-------~~~~~i~l~~~  210 (286)
                      +|+.... . ++.++++++.||.+||++|+. -...||+.|+|+-.+..|+|++||+||++       +..+++-|.++
T Consensus         3 vFlmIrR~KTTiF~dakes~tVlelK~~ieg-I~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788           3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEG-ILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             eEEEEEecceEEEeecCCcccHHHHHHHHHH-HhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence            4444333 3 888999999999999999999 99999999999977789999999999999       66888888776

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PLN02560 enoyl-CoA reductase

Probab=98.71  E-value=3.3e-08  Score=88.77  Aligned_cols=70  Identities=17%  Similarity=0.217  Sum_probs=61.7

Q ss_pred             eEEEEEeCCCCcEE---EEEEcCCccHHHHHHHHHhhhCC-CCccEEEEEC---C----EEeeccccccccccCCCCeEE
Q 023198           62 MKLYFKTPSNEKTF---ELKANRSDTIENIKFIIEVREGI-PVHEYDIYYG---G----KLIESYITLDVLNINNEDTLQ  130 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~---~l~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~~~---g----~~L~D~~tL~~~~I~~~s~i~  130 (286)
                      |.|.|+..+ |+.+   ++++++++||++||++|+++.++ ++++|||.+.   |    ..|+|+++|++||+.+|++++
T Consensus         1 M~I~Vk~~~-Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy   79 (308)
T PLN02560          1 MKVTVVSRS-GREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV   79 (308)
T ss_pred             CEEEEEcCC-CCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence            678999887 8887   79999999999999999999986 8999999973   3    378999999999999999877


Q ss_pred             EE
Q 023198          131 MI  132 (286)
Q Consensus       131 l~  132 (286)
                      +-
T Consensus        80 ~k   81 (308)
T PLN02560         80 FK   81 (308)
T ss_pred             EE
Confidence            64

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.1e-08  Score=98.24  Aligned_cols=73  Identities=18%  Similarity=0.313  Sum_probs=69.9

Q ss_pred             EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      .+.||+++ .++.++.+...+||.++|..|.++..|+.+.|||||.|+.|.|++++++|+| +|.+|||+-|++.
T Consensus         4 ~v~vktld-~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp   76 (1143)
T KOG4248|consen    4 NVLVKTLD-SRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP   76 (1143)
T ss_pred             ceeeeecc-cceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence            47899999 9999999999999999999999999999999999999999999999999999 9999999999764

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.68  E-value=2.6e-07  Score=70.45  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=56.5

Q ss_pred             ceEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhh--CC-----CCccEEEEECCEEeeccccccccccCCCC-----
Q 023198           61 VMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVRE--GI-----PVHEYDIYYGGKLIESYITLDVLNINNED-----  127 (286)
Q Consensus        61 ~~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~--gi-----p~~~q~L~~~g~~L~D~~tL~~~~I~~~s-----  127 (286)
                      .+.+.++..+ |+ +.++..++++||++||+.|...+  ++     .++..||+|.|+.|+|+.||++|.+..+.     
T Consensus         2 ~i~lkf~l~~-G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~   80 (111)
T PF13881_consen    2 KIELKFRLAD-GKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP   80 (111)
T ss_dssp             SEEEEEEETT-S-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred             eEEEEEEEeC-CCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence            3566777778 98 88999999999999999999865  22     24779999999999999999999988766     


Q ss_pred             -eEEEEeecc
Q 023198          128 -TLQMISVPK  136 (286)
Q Consensus       128 -~i~l~~~~~  136 (286)
                       ++|+++++.
T Consensus        81 ~vmHlvvrp~   90 (111)
T PF13881_consen   81 TVMHLVVRPN   90 (111)
T ss_dssp             EEEEEEE-SS
T ss_pred             EEEEEEecCC
Confidence             566666654

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.8e-08  Score=98.59  Aligned_cols=71  Identities=21%  Similarity=0.482  Sum_probs=68.5

Q ss_pred             EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      ++.||+++.++.++.+...+||.++|..|.++.+|+.+.|||+|.|+.|.|++++.+|+| +|.+|||+.|.
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverp   74 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERP   74 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccC
Confidence            478999999999999999999999999999999999999999999999999999999999 99999999874

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.66  E-value=8.2e-08  Score=68.63  Aligned_cols=55  Identities=22%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             CCcCcHHHHHHHHHHHhC-CCCCceEEE--ecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          230 AKFDTVRDVKDKLFREIG-QAPDSQRLV--FKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       230 ~~~~tV~~lK~~I~~~~g-i~~~~q~L~--~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +++.||++||..|++..+ +++++|||.  +.|+.|.|+.+|.+||+++|++||+-++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvKDL   77 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVRDL   77 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEeeC
Confidence            588999999999999976 589999995  8999999999999999999999998653

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.66  E-value=1.2e-07  Score=69.43  Aligned_cols=72  Identities=18%  Similarity=0.342  Sum_probs=55.9

Q ss_pred             eEEEEEeCCC-CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC----CE---Ee-eccccccccccCCCCeEEEE
Q 023198           62 MKLYFKTPSN-EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG----GK---LI-ESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        62 ~~i~Vk~~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g~---~L-~D~~tL~~~~I~~~s~i~l~  132 (286)
                      +.|+|..... +......+.++.||.+||.+++..+|+|++.|+|.+.    +.   .+ +|..+|.+||+.+|.+|++.
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            3566665541 2488889999999999999999999999999999764    21   23 56889999999999988876


Q ss_pred             e
Q 023198          133 S  133 (286)
Q Consensus       133 ~  133 (286)
                      -
T Consensus        82 D   82 (87)
T PF14560_consen   82 D   82 (87)
T ss_dssp             E
T ss_pred             e
Confidence            3

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.57  E-value=3.5e-07  Score=63.00  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC---CE--EeeccccccccccCCCCeEEEEee
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG---GK--LIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g~--~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      ++|+|+... +..+++.|+|..+|..+|++|+...|++- +|||.|.   |+  .|.+..+|++|||.....|.+...
T Consensus         1 iqVtV~q~g-~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT   76 (80)
T cd01811           1 IQVTVEQTG-YSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET   76 (80)
T ss_pred             CEEEeeecC-CCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence            478999988 89999999999999999999999999996 9999885   32  479999999999998887776643

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.55  E-value=4.1e-07  Score=69.39  Aligned_cols=72  Identities=21%  Similarity=0.413  Sum_probs=54.0

Q ss_pred             EEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhC-------CCCCceEEEecCeEcCCCCccccCCCCCCC------EE
Q 023198          214 SIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIG-------QAPDSQRLVFKRQQLEDDRNLASYKIVNES------IV  279 (286)
Q Consensus       214 ~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~g-------i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~------~l  279 (286)
                      .+.++..+|+ ...+..++++||++||+.|.+.+.       ..++..||+|.|+.|+|+.||.++++..|+      ++
T Consensus         4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm   83 (111)
T PF13881_consen    4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM   83 (111)
T ss_dssp             EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred             EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence            3445556888 778899999999999999987652       245678999999999999999999998766      68


Q ss_pred             EEEcCC
Q 023198          280 NLTDLG  285 (286)
Q Consensus       280 ~l~~~~  285 (286)
                      ||+.++
T Consensus        84 Hlvvrp   89 (111)
T PF13881_consen   84 HLVVRP   89 (111)
T ss_dssp             EEEE-S
T ss_pred             EEEecC
Confidence            888764

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.46  E-value=8.9e-07  Score=59.03  Aligned_cols=66  Identities=32%  Similarity=0.473  Sum_probs=60.5

Q ss_pred             EeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          218 KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       218 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      +..+|....+.+.+..|+++||.+++++.|+++..|.|+++|..+.+...+.+|++..++++++..
T Consensus         3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            334678888999999999999999999999999999999999999999988999999999999875

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.40  E-value=6.2e-07  Score=64.39  Aligned_cols=70  Identities=23%  Similarity=0.345  Sum_probs=43.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe---cCeEc--CCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF---KRQQL--EDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~g~~L--~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |.+.|+..+| +..+++++++|+.+|+++|++..++|.+.|.|..   ....+  .++.||+++||+.||.|+|..
T Consensus         5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~   79 (80)
T PF11543_consen    5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP   79 (80)
T ss_dssp             -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred             EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence            6677888776 5568999999999999999999999999998853   22345  478899999999999999853

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.39  E-value=1.4e-06  Score=60.08  Aligned_cols=69  Identities=29%  Similarity=0.396  Sum_probs=60.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe-----cCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF-----KRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-----~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +++.|+-+++...++.|+|..+|..+|++|....|++- +|||.|     +...|.+.+||++|||=....|.++
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll   74 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL   74 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence            46889988889999999999999999999999999987 999988     3457789999999999777766664

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.25  E-value=1.5e-06  Score=62.06  Aligned_cols=52  Identities=19%  Similarity=0.243  Sum_probs=46.4

Q ss_pred             CCcchHHHHHHHHhhchhcC-CCCCCCeEE--ecCcccccCCcccccCCCCCceeee
Q 023198            4 KKTEKIEKLKLRIHAKVEEE-ILEDLPELF--YAGQQLENGLTVIDYGIPNNSVIHN   57 (286)
Q Consensus         4 ~~~dtv~~vK~~i~~~~~~~-i~~~~q~l~--~~g~~L~d~~~l~~y~i~~~s~l~l   57 (286)
                      .++.||.++|..|...  .+ +|+++|+|.  +.|+.|.|+.+|++|++.+|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~--~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKS--SPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHH--cCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            4788999999999887  65 689999995  8899999999999999999999885

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.20  E-value=2.8e-06  Score=60.98  Aligned_cols=70  Identities=23%  Similarity=0.362  Sum_probs=44.6

Q ss_pred             ceeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeC---Ceee--cCCccccccccCCCceEEEE
Q 023198          138 LQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRG---GEQL--QNLKTLAYYDIKENEVLQII  208 (286)
Q Consensus       138 ~~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~---g~~L--~d~~tL~~y~i~~~~~i~l~  208 (286)
                      .|-|.|+...|...+++++++|+.+|+++|.+ ..++|.+.|.|..+   ...+  .++.++++++++.|+-|+|.
T Consensus         4 ~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~-~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    4 SMILRVRSKDGMKRIEVSPSSTLSDLKEKISE-QLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             --EEEEE-SSEEEEEEE-TTSBHHHHHHHHHH-HS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             cEEEEEECCCCCEEEEcCCcccHHHHHHHHHH-HcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            46778888888888899999999999999999 99999998888642   2244  57899999999999999874

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.20  E-value=9.3e-06  Score=53.90  Aligned_cols=63  Identities=22%  Similarity=0.406  Sum_probs=58.2

Q ss_pred             CCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           69 PSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        69 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      .+ |....+.+.++.|+.++|+.+..+.|++++.+.|+++|..+.+...+.+|++..++.+.+.
T Consensus         5 ~~-~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   67 (69)
T cd00196           5 ND-GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV   67 (69)
T ss_pred             cC-CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence            35 8888999999999999999999999999999999999999999988889999999998875

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=2.4e-06  Score=74.92  Aligned_cols=60  Identities=17%  Similarity=0.336  Sum_probs=56.8

Q ss_pred             eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          223 RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       223 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      ..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|.++-|+..+.+...+.+|++
T Consensus        14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen   14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence            457889999999999999999999999999999999999999999999999999999887

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=6.7e-07  Score=59.72  Aligned_cols=67  Identities=19%  Similarity=0.262  Sum_probs=59.6

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEE
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL  281 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l  281 (286)
                      +.++..-|+...+.+.+.+||+++|+.|++++|-.++...|--.+..++|+-+|+||.|.+|-.+.+
T Consensus         4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen    4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence            4445566899999999999999999999999999999988887788899999999999999987765

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=7.4e-06  Score=71.87  Aligned_cols=63  Identities=14%  Similarity=0.403  Sum_probs=58.0

Q ss_pred             cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE-eec
Q 023198           73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI-SVP  135 (286)
Q Consensus        73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~-~~~  135 (286)
                      ..++++|+.+.+|.+||+.++...|+|+++.+++|+|++|.|+.++..+.+...|.++.+ +||
T Consensus        14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen   14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence            567889999999999999999999999999999999999999999999999988888876 555

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.2e-05  Score=74.26  Aligned_cols=70  Identities=21%  Similarity=0.351  Sum_probs=64.4

Q ss_pred             eEEEEEeecceEEEee-cCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      +.+.|| +.|+.+.++ ++.++|+..+|.++.+.+|+||++|+++.+|..+.|+--+...+|++|.+++|+-
T Consensus         4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG   74 (473)
T KOG1872|consen    4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG   74 (473)
T ss_pred             ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence            356777 588999887 9999999999999999999999999999999999999999999999999999874

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=3e-06  Score=56.63  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      ++.++..- |+.+.+..+++|||+++|+.|..++|..++...|--.+..+.|+-+|++|.|.+|-.+.+.
T Consensus         3 ev~~nDrL-GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRL-GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhc-CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence            44555555 8999999999999999999999999999988877666777899999999999999877764

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.88  E-value=1.3e-05  Score=57.94  Aligned_cols=61  Identities=23%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC--EEeeccccccccccC
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG--KLIESYITLDVLNIN  124 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g--~~L~D~~tL~~~~I~  124 (286)
                      |.+.||..  ..++.++++++.||.+||.+++....-|++.|+|+.-.  +.|+|++||+|||..
T Consensus         3 ~f~~VrR~--kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft   65 (110)
T KOG4495|consen    3 VFLRVRRH--KTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT   65 (110)
T ss_pred             eeeeeeec--ceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence            34555554  47889999999999999999999999999999998743  468999999999765

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.69  E-value=0.00013  Score=50.03  Aligned_cols=62  Identities=19%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEE
Q 023198          220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL  281 (286)
Q Consensus       220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l  281 (286)
                      .+++.+.+.+.|++++.++-++.++++|+.++...|.|+++.++-+.++.-.|+.+|+.+.|
T Consensus         4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            57888999999999999999999999999999999999999999999999999999999875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00015  Score=67.21  Aligned_cols=74  Identities=18%  Similarity=0.258  Sum_probs=66.5

Q ss_pred             ceEEEEEeCCCCcEEEEE-EcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           61 VMKLYFKTPSNEKTFELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      ...|.||+.  |+.++++ ++.++|+..+|+++...+|+||++|+++..|..+.|+-.+....|+++.+++|+....
T Consensus         3 ~~~v~VKW~--gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e   77 (473)
T KOG1872|consen    3 SDTVIVKWG--GKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE   77 (473)
T ss_pred             cceEeeeec--CccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence            345788886  6888888 9999999999999999999999999999999999999888889999999999986543

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00074  Score=49.65  Aligned_cols=71  Identities=13%  Similarity=0.310  Sum_probs=65.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      +++.|+.-.+.+..+.|..+++...|++.-+++.|++.+..|+.|+|+.+.+..|=.+.+.++|+.|.+..
T Consensus        21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~   91 (99)
T KOG1769|consen   21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ   91 (99)
T ss_pred             EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence            56777776777888999999999999999999999999999999999999999999999999999998764

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.50  E-value=0.00021  Score=51.84  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe-c-CeEcCCCCccccCCCC
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF-K-RQQLEDDRNLASYKIV  274 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~-g~~L~d~~tL~~y~I~  274 (286)
                      ...++-+...++.||-+||.+++....-|++.|||.- . .+.|+|++||+++|..
T Consensus        10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft   65 (110)
T KOG4495|consen   10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT   65 (110)
T ss_pred             cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence            3456778999999999999999999999999999965 3 3688999999999763

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.34  E-value=0.0018  Score=46.55  Aligned_cols=70  Identities=23%  Similarity=0.342  Sum_probs=60.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEE--ecCeEcCCC--CccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLV--FKRQQLEDD--RNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~--~~g~~L~d~--~tL~~y~I~~~~~l~l~  282 (286)
                      ..|.||.++|+.+.-...+++|+.+|..-|......+... ..|+  |..+.+.+.  .||.+.|+.++++|++.
T Consensus         7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            5678899999999999999999999999999888877765 7775  788888755  59999999999999875

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.32  E-value=0.00054  Score=49.04  Aligned_cols=69  Identities=22%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCC------ceEEE-ecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPD------SQRLV-FKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~------~q~L~-~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      .|.|...+|+.+-+.++.+.+|++|...+.+..+.+..      ...|. -+|..|+++.||+++||.+|++++|.
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~   79 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR   79 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence            34555544689999999999999999999998886432      24555 68999999999999999999999874

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0042  Score=45.74  Aligned_cols=76  Identities=14%  Similarity=0.249  Sum_probs=67.9

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      +.+.|+--. +.++.+.|..+.+...|+....++.|++.+..|.+|+|+.+....|-++.+..+|+.|.++....||
T Consensus        21 i~LKV~gqd-~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG   96 (99)
T KOG1769|consen   21 INLKVKGQD-GSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG   96 (99)
T ss_pred             EEEEEecCC-CCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence            455666655 7888999999999999999999999999999999999999999999999999999999988766655

>COG5417 Uncharacterized small protein [Function unknown]

Probab=97.11  E-value=0.0036  Score=43.34  Aligned_cols=70  Identities=17%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC-----CceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP-----DSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-----~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +++-.+..+|.++-+.++...++..|-..+.+.+.+..     .+.+.+-+++.|.++..|.+|+|.+|+.+.++
T Consensus         7 VTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~LeiL   81 (81)
T COG5417           7 VTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEIL   81 (81)
T ss_pred             EEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEeC
Confidence            45666778899999999999999999988877766422     45678899999999999999999999998763

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.09  E-value=0.0021  Score=44.07  Aligned_cols=62  Identities=13%  Similarity=0.138  Sum_probs=46.2

Q ss_pred             cCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEE
Q 023198          145 TPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQI  207 (286)
Q Consensus       145 ~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l  207 (286)
                      ..++ +..+.+.++.++.+|-++... +.|+.+++..|.|+++.++-+-+++--|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~-k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACK-KFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHH-HTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHH-HcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            3456 888999999999999999999 9999999999999999999999999999999998875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=97.05  E-value=0.0046  Score=44.40  Aligned_cols=71  Identities=13%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE---DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      -.|.|+.++|+...-....++++.+|..-++. .|.+++.+.|+  |..+.+.   .+.||.+.|+.+..+|.+-.|
T Consensus         6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r   81 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER   81 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence            46889999999999999999999999999998 68899999996  7777774   347999999999999999876

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.03  E-value=0.004  Score=44.54  Aligned_cols=70  Identities=19%  Similarity=0.307  Sum_probs=59.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCC---CCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLED---DRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~l~l~  282 (286)
                      ..|.||.++|+.+.-...+++|+++|.+-|....+.......|+  |..+.+.+   +.||.+.|+.++++|.+-
T Consensus         5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166        5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence            46788999999999999999999999999977677766677774  77888864   479999999999998774

Present in FAF1 and Shp1p.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.03  E-value=0.0037  Score=50.53  Aligned_cols=76  Identities=17%  Similarity=0.137  Sum_probs=58.0

Q ss_pred             eEEEEEeCCCC----cEEEEEEcCCccHHHHHHHHHhhhCCCCccE-EEEE-CCEEe--eccccccccccCCC----CeE
Q 023198           62 MKLYFKTPSNE----KTFELKANRSDTIENIKFIIEVREGIPVHEY-DIYY-GGKLI--ESYITLDVLNINNE----DTL  129 (286)
Q Consensus        62 ~~i~Vk~~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~-~g~~L--~D~~tL~~~~I~~~----s~i  129 (286)
                      |+|+|+++. |    .++.+.+.++.||.+|+..|....++|...| .|.+ .|+.|  .++..++.+.-.+.    .++
T Consensus         1 i~Vlvss~~-g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l   79 (162)
T PF13019_consen    1 INVLVSSFD-GLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITL   79 (162)
T ss_pred             CeEEEecCC-CCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEE
Confidence            579999999 8    6889999999999999999999999998874 4554 45566  45555666554333    367


Q ss_pred             EEEeecccc
Q 023198          130 QMISVPKEL  138 (286)
Q Consensus       130 ~l~~~~~~~  138 (286)
                      .+.++++||
T Consensus        80 ~l~~rl~GG   88 (162)
T PF13019_consen   80 RLSLRLRGG   88 (162)
T ss_pred             EEEEeccCC
Confidence            777777764

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=96.85  E-value=0.0078  Score=42.69  Aligned_cols=69  Identities=22%  Similarity=0.277  Sum_probs=54.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCC---CCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLED---DRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~l~l~~  283 (286)
                      ..|.||.++|+.+.-..++++|+++|.+-|.....- .....|+  |..+.+.+   +.||.+.|+.+ +++.+.+
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~~~   76 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQRL   76 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEEEe
Confidence            357889999999999999999999999999876543 5556674  67888854   78999999994 5555443

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=96.83  E-value=0.0074  Score=43.13  Aligned_cols=69  Identities=17%  Similarity=0.302  Sum_probs=57.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCC---CCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLED---DRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~l~l~  282 (286)
                      ..|.||.++|+.+.-..++++|+++|.+-|+...+-+ ....|+  |..+.+.+   +.||.+.|+.+..+|.+.
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~   78 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT   78 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence            4577899999999999999999999999998765433 556664  78898864   589999999999999874

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=96.74  E-value=0.0082  Score=42.92  Aligned_cols=68  Identities=22%  Similarity=0.358  Sum_probs=54.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCC-CCceEEE--ecCeEcC-CCCccccCCCCCCCEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQA-PDSQRLV--FKRQQLE-DDRNLASYKIVNESIVN  280 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~-~~~q~L~--~~g~~L~-d~~tL~~y~I~~~~~l~  280 (286)
                      ..|.|+.++|+.+....+.++||++|.+-|....+-+ .....|+  |..+.|. ++.||.|.|+.+...+.
T Consensus         5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q   76 (79)
T cd01770           5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ   76 (79)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence            4678899999999999999999999999999876432 3456674  7888885 47899999999765543

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=96.69  E-value=0.014  Score=42.34  Aligned_cols=70  Identities=23%  Similarity=0.319  Sum_probs=58.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe--cCeEcC--------CCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQLE--------DDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~--------d~~tL~~y~I~~~~~l~l~  282 (286)
                      ..|.++.++|+.+.-....++|+++|..-|.. .+..+..+.|+.  ..+.+.        .+.||.+.|+.+..+|.+.
T Consensus         5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~   83 (85)
T cd01774           5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ   83 (85)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence            56788999999999999999999999999964 456668889874  448885        3679999999999999876


Q ss_pred             c
Q 023198          283 D  283 (286)
Q Consensus       283 ~  283 (286)
                      +
T Consensus        84 d   84 (85)
T cd01774          84 D   84 (85)
T ss_pred             c
Confidence            4

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=96.67  E-value=0.0042  Score=53.20  Aligned_cols=72  Identities=21%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             EEEEEeecc-eEEE-eecCCcCcHHHHHHHHHHH-hCCCCCceEE----EecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          214 SIFVKLLNG-RYII-LEVAKFDTVRDVKDKLFRE-IGQAPDSQRL----VFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       214 ~i~vk~~~g-~~~~-l~v~~~~tV~~lK~~I~~~-~gi~~~~q~L----~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      .|.+...++ ..++ ..++.+.|+.|+++.+.++ ..+-+..+|+    .-+|++|-|+.+|++|+..+|.++++.+.|
T Consensus         2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLG   80 (297)
T KOG1639|consen    2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLG   80 (297)
T ss_pred             ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccC
Confidence            344544443 2333 5678899999999766555 4577755554    348999999999999999999999999887

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.67  E-value=0.017  Score=41.30  Aligned_cols=71  Identities=15%  Similarity=0.286  Sum_probs=59.0

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCcc-EEEE--ECCEEeecc--ccccccccCCCCeEEE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHE-YDIY--YGGKLIESY--ITLDVLNINNEDTLQM  131 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~-q~L~--~~g~~L~D~--~tL~~~~I~~~s~i~l  131 (286)
                      +...|.||.++ |+.+.-...+++||.+|...|......+... ..|+  |-.+.+.+.  .||++.|+...+++.+
T Consensus         5 ~~~~I~vRlpd-G~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    5 DVVRIQVRLPD-GSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             SEEEEEEEETT-STEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CEEEEEEECCC-CCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            35778999999 9999999999999999999999887766654 6675  556777554  6999999999988875

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.62  E-value=0.0075  Score=43.04  Aligned_cols=69  Identities=13%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCcc------EEEE-ECCEEeeccccccccccCCCCeEEE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHE------YDIY-YGGKLIESYITLDVLNINNEDTLQM  131 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~------q~L~-~~g~~L~D~~tL~~~~I~~~s~i~l  131 (286)
                      ++|+|.... |+.+.+.+..+.+|+++...+-+..+.+...      -.|. -.|..|.++.||++++|.+|+.+.+
T Consensus         3 ~rVtv~~~~-~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    3 CRVTVDAGN-GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEEcCC-CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            467777765 7999999999999999999999887754322      3343 4688999999999999999998876

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.53  E-value=0.0023  Score=47.65  Aligned_cols=43  Identities=23%  Similarity=0.259  Sum_probs=34.9

Q ss_pred             CcchHHHHHHHHhhchhcCCCCCCCeEEecCcccccCCccccc
Q 023198            5 KTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDY   47 (286)
Q Consensus         5 ~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~L~d~~~l~~y   47 (286)
                      ...||..+|.+|++..........++|+|+|+.|.|+..|+..
T Consensus        22 ~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~   64 (97)
T PF10302_consen   22 NTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE   64 (97)
T ss_pred             CcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence            7799999999999993234445558999999999998877664

They contain a characteristic GFDRL sequence motif.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=96.47  E-value=0.022  Score=40.76  Aligned_cols=71  Identities=14%  Similarity=0.210  Sum_probs=60.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE---DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ..|.++.++|+.+.-....++++++|..-|... |.++..++|+  |..+.+.   .+.||.+.|+.++.+|.+-.|
T Consensus         5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Veer   80 (80)
T cd01771           5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEER   80 (80)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEcC
Confidence            567889999999999999999999999999875 8888888985  7888774   356999999999999987543

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.0046  Score=51.62  Aligned_cols=58  Identities=29%  Similarity=0.359  Sum_probs=55.0

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCE
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESI  278 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~  278 (286)
                      +++.+.+.+.+.+|+.++|.++.+..|+.+.-|+++|+|..+-|...|.+++|.+|+.
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~r  212 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQR  212 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCE
Confidence            6788899999999999999999999999999999999999999999999999999953

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.39  E-value=0.0079  Score=44.74  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=42.2

Q ss_pred             EEEeec-ceEEEeecC--CcCcHHHHHHHHHHHhC--CCCCceEEEecCeEcCCCCccccC
Q 023198          216 FVKLLN-GRYIILEVA--KFDTVRDVKDKLFREIG--QAPDSQRLVFKRQQLEDDRNLASY  271 (286)
Q Consensus       216 ~vk~~~-g~~~~l~v~--~~~tV~~lK~~I~~~~g--i~~~~q~L~~~g~~L~d~~tL~~y  271 (286)
                      .|++.+ -....+++.  .+.||..||.+|.+..+  ..-..+||+|+|+.|.|+..|...
T Consensus         4 ~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~   64 (97)
T PF10302_consen    4 TIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE   64 (97)
T ss_pred             EEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence            344433 234566666  88999999999999984  444668899999999999887554

They contain a characteristic GFDRL sequence motif.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.29  E-value=0.027  Score=40.21  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=56.1

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEeec---cccccccccCCCCeEEE
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIES---YITLDVLNINNEDTLQM  131 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~D---~~tL~~~~I~~~s~i~l  131 (286)
                      ...|.||.++ |+.+.....+++|+++|.+.+....+.+.....|+  |-.+.+.+   +.||.+.++...+++.+
T Consensus         4 ~~~I~iRlPd-G~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        4 QCRLQIRLPD-GSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             eEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            4678899999 99999999999999999999976666665666774  55666753   47999999988777664

Present in FAF1 and Shp1p.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.0091  Score=49.87  Aligned_cols=60  Identities=22%  Similarity=0.355  Sum_probs=55.7

Q ss_pred             CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEE
Q 023198           72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQM  131 (286)
Q Consensus        72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l  131 (286)
                      ++.+.+.+...||+.++|..+++..|+.+..|+++|+|+.+-|...|.+|+|.+|....+
T Consensus       156 ~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl  215 (231)
T KOG0013|consen  156 REDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL  215 (231)
T ss_pred             hhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence            678888889999999999999999999999999999999999999999999999976554

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=96.08  E-value=0.032  Score=45.14  Aligned_cols=64  Identities=27%  Similarity=0.323  Sum_probs=49.8

Q ss_pred             eEEEEEeecc----eEEEeecCCcCcHHHHHHHHHHHhCCCCCce-EEEe-cCeEc--CCCCccccCCCCCC
Q 023198          213 HSIFVKLLNG----RYIILEVAKFDTVRDVKDKLFREIGQAPDSQ-RLVF-KRQQL--EDDRNLASYKIVNE  276 (286)
Q Consensus       213 ~~i~vk~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~-~g~~L--~d~~tL~~y~I~~~  276 (286)
                      ++|+|+++.|    .++.+.++++.||.+|+..|.+..+++...| .|.+ .++.+  .++..+..+.-.+.
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~   72 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ   72 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence            5789999999    6899999999999999999999999999884 4554 35455  45556666654444

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=95.88  E-value=0.069  Score=37.75  Aligned_cols=67  Identities=13%  Similarity=0.307  Sum_probs=51.7

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEee---ccccccccccCCCCeEE
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIE---SYITLDVLNINNEDTLQ  130 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---D~~tL~~~~I~~~s~i~  130 (286)
                      ...|.||.++ |+.+.-....++|+++|.+.|.....- .....|+  |-.+.+.   .+.||.+.|+.+ +.+.
T Consensus         2 ~t~i~iRlpd-G~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~   73 (77)
T cd01767           2 TTKIQIRLPD-GKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVF   73 (77)
T ss_pred             cEEEEEEcCC-CCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEE
Confidence            4578899999 999999999999999999999876543 3445564  5567774   478999999984 4443

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=95.56  E-value=0.12  Score=45.18  Aligned_cols=105  Identities=14%  Similarity=0.228  Sum_probs=73.0

Q ss_pred             EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeC----Ce--eecCCccccccccCCCceEEEEeee-------------
Q 023198          151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRG----GE--QLQNLKTLAYYDIKENEVLQIIRHV-------------  211 (286)
Q Consensus       151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~----g~--~L~d~~tL~~y~i~~~~~i~l~~~~-------------  211 (286)
                      .+.|..+++|.++-..|.+ +.|+|++...++|.    +.  .++...++....+.+|+.|..-...             
T Consensus        88 h~~v~~~~~v~~l~~~i~~-~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v  166 (249)
T PF12436_consen   88 HVYVPKNDKVSELVPLINE-RAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDV  166 (249)
T ss_dssp             EEEEETT-BGGGTHHHHHH-HHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SH
T ss_pred             EEEECCCCCHHHHHHHHHH-HcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCH
Confidence            3567889999999999999 99999998777773    22  5788899999999999999876532             


Q ss_pred             ---------eeEEEEEee---cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198          212 ---------KHSIFVKLL---NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV  256 (286)
Q Consensus       212 ---------~~~i~vk~~---~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~  256 (286)
                               ++.|.++-.   .+..|.+.++...|-.+|-++|+++.|++|...||.
T Consensus       167 ~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  167 KEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             HHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             HHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence                     144555442   345899999999999999999999999999999885

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=95.53  E-value=0.084  Score=37.68  Aligned_cols=68  Identities=15%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCC-CccEEEE--ECCEEeec-cccccccccCCCCe
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIP-VHEYDIY--YGGKLIES-YITLDVLNINNEDT  128 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip-~~~q~L~--~~g~~L~D-~~tL~~~~I~~~s~  128 (286)
                      +...|-||.++ |+.+....+.++||++|.+.|....+-+ .....|.  |-.+.|.| +.||.|.|+.+.+.
T Consensus         3 p~t~iqiRlpd-G~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v   74 (79)
T cd01770           3 PTTSIQIRLAD-GKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI   74 (79)
T ss_pred             CeeEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence            45678899999 9999999999999999999999865432 2445664  66787754 78999999886543

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=95.45  E-value=0.12  Score=36.77  Aligned_cols=69  Identities=10%  Similarity=0.236  Sum_probs=54.2

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEeec---cccccccccCCCCeEEE
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIES---YITLDVLNINNEDTLQM  131 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~D---~~tL~~~~I~~~s~i~l  131 (286)
                      ...|.||.++ |+.+.-....++|+++|.+.|+...+-+ ....|+  |-.+.+.+   +.||.+.|+.+.+++.+
T Consensus         4 ~~~i~iRlp~-G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           4 ETRIQIRLLD-GTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEEECCC-CCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            3568889998 9999999999999999999998765433 335554  66777753   57999999998877764

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=95.26  E-value=0.18  Score=36.54  Aligned_cols=70  Identities=16%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC--EEee--------ccccccccccCCCCeE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG--KLIE--------SYITLDVLNINNEDTL  129 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g--~~L~--------D~~tL~~~~I~~~s~i  129 (286)
                      ...+|.||.++ |+.+.-....++|+++|-..|... +-.+....|+.+-  +.+.        .+.||.+.|+.+..++
T Consensus         3 ~~~~I~iRlp~-G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L   80 (85)
T cd01774           3 DTVKIVFKLPN-GTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL   80 (85)
T ss_pred             ceEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence            45678899999 999999999999999999999754 4455677776543  6775        3679999999987766


Q ss_pred             EE
Q 023198          130 QM  131 (286)
Q Consensus       130 ~l  131 (286)
                      .+
T Consensus        81 ~V   82 (85)
T cd01774          81 FV   82 (85)
T ss_pred             EE
Confidence            54

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=95.04  E-value=0.22  Score=35.20  Aligned_cols=67  Identities=19%  Similarity=0.235  Sum_probs=51.9

Q ss_pred             EEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEe----c--CeEcCCCCccccCCCC--CCCEEEEEc
Q 023198          217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVF----K--RQQLEDDRNLASYKIV--NESIVNLTD  283 (286)
Q Consensus       217 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~----~--g~~L~d~~tL~~y~I~--~~~~l~l~~  283 (286)
                      |+.++|....++++++.|+.+|=++|+++.|+.... .-|.|    +  ..-|+.+++|.++...  ...++++..
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv   76 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV   76 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence            567899999999999999999999999999987644 45777    2  2356788999999877  444555543

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=94.54  E-value=0.14  Score=36.89  Aligned_cols=69  Identities=16%  Similarity=0.291  Sum_probs=60.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL  281 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l  281 (286)
                      +++.|..-+|.++-+.+..++|...|....+++.|=..+..|+.|.|+.++.++|=.+.+...++.|..
T Consensus        25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa   93 (103)
T COG5227          25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA   93 (103)
T ss_pred             cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence            455555557788889999999999999999999999999999999999999999999999998887653

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=94.43  E-value=0.33  Score=34.70  Aligned_cols=71  Identities=21%  Similarity=0.348  Sum_probs=57.5

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEee---ccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIE---SYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---D~~tL~~~~I~~~s~i~l~  132 (286)
                      +..+|.|+.++ |+.+.-....++++++|-..+... |.++...+|+  |--+.+.   .+.||.+.|+....++.+-
T Consensus         3 ~~~~i~iRlP~-G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           3 PISKLRVRTPS-GDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             CeEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            45678899999 999999999999999999999874 7777777885  5667663   3569999999888777653

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.43  E-value=0.11  Score=37.74  Aligned_cols=44  Identities=11%  Similarity=0.223  Sum_probs=39.1

Q ss_pred             EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC---CceEEEe
Q 023198          214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP---DSQRLVF  257 (286)
Q Consensus       214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~---~~q~L~~  257 (286)
                      .+.++.+.|+++.+.+.++..+.+|++.|+++.|+..   ....|.|
T Consensus         2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            4677889999999999999999999999999999887   4677776

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=94.40  E-value=0.074  Score=45.76  Aligned_cols=70  Identities=16%  Similarity=0.140  Sum_probs=50.9

Q ss_pred             eEEEEEeCCCCcEEE-EEEcCCccHHHHHHHHHhh-hCCCCccEEEE----ECCEEeeccccccccccCCCCeEEE
Q 023198           62 MKLYFKTPSNEKTFE-LKANRSDTIENIKFIIEVR-EGIPVHEYDIY----YGGKLIESYITLDVLNINNEDTLQM  131 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~-l~v~~~~tV~~lK~~I~~~-~gip~~~q~L~----~~g~~L~D~~tL~~~~I~~~s~i~l  131 (286)
                      |.|++..-++|..++ ...+.+.|+.++++.+..+ ..+.+..+|+.    -.|+.|-|+.+|++|+..++.++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            456776665334555 4456688999999776654 46777655553    4699999999999999999977765

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=94.34  E-value=0.68  Score=39.53  Aligned_cols=101  Identities=18%  Similarity=0.304  Sum_probs=57.4

Q ss_pred             EEEEEEcCCccHHHHHHHHHhhhCCCCc---cEEE--EECCEE---eeccccccccccCCCCeEEEEeecc---------
Q 023198           74 TFELKANRSDTIENIKFIIEVREGIPVH---EYDI--YYGGKL---IESYITLDVLNINNEDTLQMISVPK---------  136 (286)
Q Consensus        74 ~~~l~v~~~~tV~~lK~~I~~~~gip~~---~q~L--~~~g~~---L~D~~tL~~~~I~~~s~i~l~~~~~---------  136 (286)
                      .+.+-+..+.||.+|-++++.+.+++.+   ..|+  +++++.   +..+.++.+.  .+...+.+-.-+.         
T Consensus        35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~  112 (213)
T PF14533_consen   35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES  112 (213)
T ss_dssp             EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence            5778889999999999999999998865   4454  467764   5667777655  3223343322221         


Q ss_pred             -cceeEEe----ecCC---C-eEEEecCCCccHHhHHHHHHHHhcCCCCC
Q 023198          137 -ELQEIFV----QTPT---S-TVKLEVRRAHTVLDVKKMVESMRICIPSE  177 (286)
Q Consensus       137 -~~~~I~V----~~~~---g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~  177 (286)
                       +.+-|.|    +.++   | .|.+.|.++.|..++|+.|+. +.|+|..
T Consensus       113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~-rlgv~~k  161 (213)
T PF14533_consen  113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQK-RLGVSDK  161 (213)
T ss_dssp             -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHH-HH---HH
T ss_pred             ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHH-HhCCChh
Confidence             1233444    2222   6 888899999999999999999 9999943

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=94.30  E-value=0.47  Score=34.04  Aligned_cols=71  Identities=13%  Similarity=0.263  Sum_probs=58.5

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe---eccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI---ESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L---~D~~tL~~~~I~~~s~i~l~  132 (286)
                      +.-+|.||.++ |+...-....++++++|-..++. .|.++....|+  |--+.+   +.+.||.+.|+....++.+-
T Consensus         4 ~~t~i~vRlP~-G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           4 PKARLMLRYPD-GKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             CeeEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence            45678999999 99999999999999999999998 57788888886  555655   34579999999988877764

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=94.29  E-value=0.12  Score=45.25  Aligned_cols=102  Identities=17%  Similarity=0.271  Sum_probs=72.2

Q ss_pred             CCCcchHHHHHHHHhhchhcCCCCCCCeEEecC------cccccCCcccccCCCCCceeee---e---------------
Q 023198            3 VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAG------QQLENGLTVIDYGIPNNSVIHN---D---------------   58 (286)
Q Consensus         3 v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g------~~L~d~~~l~~y~i~~~s~l~l---~---------------   58 (286)
                      |...++|.++=..|.++  -|.|++...++|.-      ..++.+.|++...+.+|+.|-.   .               
T Consensus        91 v~~~~~v~~l~~~i~~~--~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~  168 (249)
T PF12436_consen   91 VPKNDKVSELVPLINER--AGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE  168 (249)
T ss_dssp             EETT-BGGGTHHHHHHH--HT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred             ECCCCCHHHHHHHHHHH--cCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence            45678888999999999  99999999888874      2478889999999999999887   1               


Q ss_pred             -----CCceEEEEEeCC--CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE
Q 023198           59 -----SGVMKLYFKTPS--NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY  106 (286)
Q Consensus        59 -----~~~~~i~Vk~~~--~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~  106 (286)
                           ...+.|.++...  ++..|.++++...|-.+|-++|.++.|++|...|++
T Consensus       169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence                 135667777533  246899999999999999999999999999988885

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=93.99  E-value=0.53  Score=32.81  Aligned_cols=61  Identities=18%  Similarity=0.147  Sum_probs=49.5

Q ss_pred             CCcEEEEEEcCCccHHHHHHHHHhhhCC--C---CccEEEEECCEEeeccccccccccCCCCeEEE
Q 023198           71 NEKTFELKANRSDTIENIKFIIEVREGI--P---VHEYDIYYGGKLIESYITLDVLNINNEDTLQM  131 (286)
Q Consensus        71 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi--p---~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l  131 (286)
                      +|.++.+.++...++..+=..+-+...+  +   -.+.+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus        15 ~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417          15 NGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             CCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            4999999999999998888776665432  2   24567888899999999999999999997753

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=93.86  E-value=0.48  Score=40.49  Aligned_cols=96  Identities=15%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             CCCCcchHHHHHHHHhhchhcCCCCC-CCeE----EecCcc---cccCCcccccCCCCCceeee---------eC----C
Q 023198            2 KVKKTEKIEKLKLRIHAKVEEEILED-LPEL----FYAGQQ---LENGLTVIDYGIPNNSVIHN---------DS----G   60 (286)
Q Consensus         2 ~v~~~dtv~~vK~~i~~~~~~~i~~~-~q~l----~~~g~~---L~d~~~l~~y~i~~~s~l~l---------~~----~   60 (286)
                      -|..+.||.++..+++.+  .+++.+ .+.|    +++++.   +..+..++..  ....++.+         ..    +
T Consensus        39 ~vpk~~tV~Dll~~l~~k--~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~~~  114 (213)
T PF14533_consen   39 LVPKTGTVSDLLEELQKK--VGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDESEG  114 (213)
T ss_dssp             --BTT-BHHHHHHHHHTT------TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT--T
T ss_pred             EECCCCCHHHHHHHHHHH--cCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccccc
Confidence            367889999999999999  888765 3444    355553   6666666655  22223443         11    2


Q ss_pred             ceEEEEEeCC------CCcEEEEEEcCCccHHHHHHHHHhhhCCCCc
Q 023198           61 VMKLYFKTPS------NEKTFELKANRSDTIENIKFIIEVREGIPVH  101 (286)
Q Consensus        61 ~~~i~Vk~~~------~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~  101 (286)
                      .+.|.|-...      +|-.|.+.|.+++|..++|++|+++.|+|-.
T Consensus       115 ~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k  161 (213)
T PF14533_consen  115 EKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK  161 (213)
T ss_dssp             EEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred             ceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence            3556665443      2777888999999999999999999999953

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=93.72  E-value=0.54  Score=33.69  Aligned_cols=66  Identities=21%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             EEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeeeeeEEEEEeecc
Q 023198          150 VKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNG  222 (286)
Q Consensus       150 ~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~i~vk~~~g  222 (286)
                      +...++-..++..||..++. +.++..+.+.+...+..|+++++|.+.+++-.-.+.+.      +-|++..|
T Consensus         5 I~q~mDI~epl~~Lk~lLe~-Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln------vQi~s~~~   70 (88)
T PF11620_consen    5 IMQHMDIREPLSTLKKLLER-RLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN------VQIKSNQG   70 (88)
T ss_dssp             EEEEEESSSBGGGHHHHSHH-HH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE------EEEE--TT
T ss_pred             EEEEEecCCcHHHHHHHHHH-hhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE------EEEEecCC
Confidence            34455666789999999999 99999999999998988999999999999998888864      44555544

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=93.61  E-value=0.13  Score=37.20  Aligned_cols=71  Identities=15%  Similarity=0.281  Sum_probs=60.8

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      +.+.|--.. |.++.+.+..+.+...|-.......|-.-+..|..|+|+..+-++|-.|++..++..|..+.
T Consensus        25 inLkvv~qd-~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~   95 (103)
T COG5227          25 INLKVVDQD-GTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT   95 (103)
T ss_pred             cceEEecCC-CCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence            445555556 88999999999999999999999999999999999999999999999999988887665443

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=93.48  E-value=0.16  Score=35.96  Aligned_cols=57  Identities=25%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             cCCcCcHHHHHHHHHHHhC-CCCCceEEEecCeEcCCCCccccCC-CCCCCEEEEEcCC
Q 023198          229 VAKFDTVRDVKDKLFREIG-QAPDSQRLVFKRQQLEDDRNLASYK-IVNESIVNLTDLG  285 (286)
Q Consensus       229 v~~~~tV~~lK~~I~~~~g-i~~~~q~L~~~g~~L~d~~tL~~y~-I~~~~~l~l~~~~  285 (286)
                      |.++++|.+++.-+..... .......|.++|+.|+|...|.+.. +++|+++.++..+
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence            5788999999999988765 5667788999999999999998875 8889999998654

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=0.23  Score=41.55  Aligned_cols=59  Identities=24%  Similarity=0.325  Sum_probs=49.7

Q ss_pred             EeecCCcCcHHHHHHHHHHHhCCCCCceEE-EecC-----eEc-CCCCccccCCCCCCCEEEEEcC
Q 023198          226 ILEVAKFDTVRDVKDKLFREIGQAPDSQRL-VFKR-----QQL-EDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       226 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L-~~~g-----~~L-~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .-+.+++.|++++|.++.-.+|.+++..+| .|.|     ..| +++..|..|...+|-.||+++.
T Consensus        16 Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~   81 (234)
T KOG3206|consen   16 EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS   81 (234)
T ss_pred             hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence            346789999999999999999999999998 4554     234 4677899999999999999874

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=93.39  E-value=0.47  Score=33.82  Aligned_cols=39  Identities=13%  Similarity=0.179  Sum_probs=35.5

Q ss_pred             EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEc
Q 023198          224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQL  262 (286)
Q Consensus       224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L  262 (286)
                      ++.+.+++..+..+|+++|.++.++|+++..|.|+...=
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s   50 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEAS   50 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCC
Confidence            899999999999999999999999999999999965543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=92.78  E-value=0.41  Score=34.31  Aligned_cols=58  Identities=21%  Similarity=0.301  Sum_probs=41.6

Q ss_pred             EEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          225 IILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       225 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +...++-..++..||..++.+.|+.-+.+.+...+..|+++++|-+.+++-..++.+.
T Consensus         5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln   62 (88)
T PF11620_consen    5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN   62 (88)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence            4455677788999999999999999999999988888999999999999988887765

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=92.17  E-value=0.36  Score=33.76  Aligned_cols=45  Identities=27%  Similarity=0.282  Sum_probs=40.1

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR  259 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g  259 (286)
                      +.|-.++|+.-.+.+.|..|+.++-++++++.|+.++...+.+.|
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            356678999999999999999999999999999999998887654

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>smart00455 RBD Raf-like Ras-binding domain

Probab=91.99  E-value=0.41  Score=33.29  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=39.8

Q ss_pred             EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC
Q 023198          216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR  259 (286)
Q Consensus       216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g  259 (286)
                      .|-.++|+...+.+.|..|+.++-+.++++.|+.++...+...|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            45678999999999999999999999999999999999988754

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=91.34  E-value=0.68  Score=38.85  Aligned_cols=59  Identities=15%  Similarity=0.272  Sum_probs=48.3

Q ss_pred             EEEcCCccHHHHHHHHHhhhCCCCccEEE-EECC-----EEe-eccccccccccCCCCeEEEEeec
Q 023198           77 LKANRSDTIENIKFIIEVREGIPVHEYDI-YYGG-----KLI-ESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        77 l~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g-----~~L-~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ....++.|++++|.+++-..|.+++...| .|.|     -.| +++..|..|...+|-.||++-.-
T Consensus        17 kr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~   82 (234)
T KOG3206|consen   17 KRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN   82 (234)
T ss_pred             hhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence            44668999999999999999999999988 5765     235 45678999999999988877543

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=91.02  E-value=0.39  Score=33.94  Aligned_cols=56  Identities=23%  Similarity=0.350  Sum_probs=43.0

Q ss_pred             cCCCccHHhHHHHHHHHhcC-CCCCCeEEEeCCeeecCCccccccc-cCCCceEEEEee
Q 023198          154 VRRAHTVLDVKKMVESMRIC-IPSEDCELFRGGEQLQNLKTLAYYD-IKENEVLQIIRH  210 (286)
Q Consensus       154 v~~~~tV~~lK~~I~~~~~g-ip~~~q~L~~~g~~L~d~~tL~~y~-i~~~~~i~l~~~  210 (286)
                      |.+.++|.|+++-+.. ... .....+.|.++|..|++...+++.. ++.|+++.++..
T Consensus         1 v~~~d~v~dvrq~L~~-~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~   58 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAE-SPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE   58 (76)
T ss_pred             CChhhHHHHHHHHHHh-CccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence            5678999999999998 432 4444577888999998888888854 777888877654

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=90.88  E-value=3.5  Score=28.85  Aligned_cols=66  Identities=11%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             EEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEE----CCE--EeeccccccccccCCCCeEEEE
Q 023198           66 FKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-EYDIYY----GGK--LIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        66 Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~----~g~--~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      |+.++ |....++++++.|+.++=+.|.++.|+.-. ..-|.+    +|.  =|+.+++|.++.........+.
T Consensus         1 V~llD-~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~   73 (80)
T PF09379_consen    1 VRLLD-GTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLY   73 (80)
T ss_dssp             EEESS-EEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEE
T ss_pred             CCCcC-CCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEE
Confidence            56677 999999999999999999999999998753 477877    222  2788889998877744444433

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PRK06437 hypothetical protein; Provisional

Probab=90.76  E-value=1.8  Score=29.73  Aligned_cols=54  Identities=13%  Similarity=0.161  Sum_probs=43.4

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      +++.-.++++...|+.+|-+    ..|+++....+..+|..+.     .++-+++|+.|.++.
T Consensus         9 g~~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~   62 (67)
T PRK06437          9 GHINKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE   62 (67)
T ss_pred             CCcceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence            55667778888899998764    4589988888889999997     677788999998864

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=89.83  E-value=1.4  Score=31.55  Aligned_cols=41  Identities=7%  Similarity=0.087  Sum_probs=34.7

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhCCCC-CceEEEecCeE
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRLVFKRQQ  261 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~~g~~  261 (286)
                      +|..+.+.++++.+..+|+++|++++++.. ....|.|..-+
T Consensus         8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde   49 (82)
T cd06407           8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD   49 (82)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence            678899999999999999999999999875 66777774443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=89.50  E-value=2  Score=28.52  Aligned_cols=52  Identities=15%  Similarity=0.226  Sum_probs=39.5

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      +|+.  +++....|..+||.++..      +.=.++++|-...++     +-+++||.|.+..||
T Consensus         6 N~k~--~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d-----~~L~e~D~v~~IkkG   57 (57)
T PF14453_consen    6 NEKE--IETEENTTLFELRKESKP------DADIVILNGFPTKED-----IELKEGDEVFLIKKG   57 (57)
T ss_pred             CCEE--EEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCc-----cccCCCCEEEEEeCC
Confidence            4454  568888999999987664      233779999988775     455678999999887

>smart00666 PB1 PB1 domain

Probab=88.97  E-value=1.7  Score=30.58  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=37.5

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ  260 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~  260 (286)
                      +.++. +|....+.+++..|..+|+.+|+.+++++.....|.|...
T Consensus         4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De   48 (81)
T smart00666        4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE   48 (81)
T ss_pred             EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence            44443 6788899999999999999999999999888888888643

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=88.51  E-value=1.6  Score=31.57  Aligned_cols=37  Identities=22%  Similarity=0.419  Sum_probs=33.3

Q ss_pred             EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc
Q 023198           64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH  101 (286)
Q Consensus        64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~  101 (286)
                      ..++.+. |+++.+.+.|+..+.+|++.|.++.|+...
T Consensus         3 FK~~~~~-GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~   39 (86)
T cd06409           3 FKFKDPK-GRVHRFRLRPSESLEELRTLISQRLGDDDF   39 (86)
T ss_pred             EEeeCCC-CCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence            4567888 999999999999999999999999998863

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=87.88  E-value=5.9  Score=28.79  Aligned_cols=64  Identities=13%  Similarity=0.139  Sum_probs=43.1

Q ss_pred             cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE-EC---CE-Eee-ccccccccccCCCCeEEEEeeccc
Q 023198           73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIY-YG---GK-LIE-SYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~---g~-~L~-D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      ..++...+..|||+.+++.+.+.+.| ...-||- +.   +. .|. .+.|+.+.++..|-+|.+-.+-.+
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D   83 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED   83 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence            46677788999999999999999999 5667773 22   33 354 457999999999988777655443

>smart00295 B41 Band 4

Probab=87.68  E-value=3.8  Score=34.04  Aligned_cols=70  Identities=19%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEec---C---eEcCCCCccccCCCC-CCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFK---R---QQLEDDRNLASYKIV-NESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~---g---~~L~d~~tL~~y~I~-~~~~l~l~  282 (286)
                      ..+.|..++|.+..+.+++++|++++-..++.+.|++... .-|.+.   +   ..++...++.+...+ ....+++.
T Consensus         4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr   81 (207)
T smart00295        4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR   81 (207)
T ss_pred             EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence            4677888999999999999999999999999999996532 234331   1   346667777776655 23455544

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=87.41  E-value=1.4  Score=30.75  Aligned_cols=44  Identities=25%  Similarity=0.293  Sum_probs=38.1

Q ss_pred             EEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCC
Q 023198          141 IFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGG  185 (286)
Q Consensus       141 I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g  185 (286)
                      +.|-.++| .-.+.++++.|+.++-+.+.+ +.|+.++...+.+.|
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~-kr~l~~~~~~v~~~~   46 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACK-KRGLNPECCDVFLLG   46 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHH-HcCCCHHHEEEEEec
Confidence            34667888 888999999999999999999 999999998887643

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=87.31  E-value=0.28  Score=44.05  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=47.7

Q ss_pred             ceEEEEEeCCCCcE--EEEEEcCCccHHHHHHHHHhhh-CCCC-ccEEEEECCEEeeccccccccccC
Q 023198           61 VMKLYFKTPSNEKT--FELKANRSDTIENIKFIIEVRE-GIPV-HEYDIYYGGKLIESYITLDVLNIN  124 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~--~~l~v~~~~tV~~lK~~I~~~~-gip~-~~q~L~~~g~~L~D~~tL~~~~I~  124 (286)
                      .+.+++|... .+.  ..+..+..-||++||..+.... +-|. ..|||+|.|+.|.|+..|.|.=++
T Consensus         9 ~v~lliks~N-q~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk   75 (391)
T KOG4583|consen    9 PVTLLIKSPN-QSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK   75 (391)
T ss_pred             ceEEEecCCC-ccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence            4566777765 444  4455566889999999998876 4453 569999999999999998887544

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=87.04  E-value=2.6  Score=29.31  Aligned_cols=51  Identities=25%  Similarity=0.350  Sum_probs=38.2

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe--cCeEcCCC
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQLEDD  265 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~d~  265 (286)
                      +.|..++|+...+.+.+..|+.++-.++.++.|+.++...+..  ..+.|.-+
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~   55 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD   55 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence            4567789999999999999999999999999999999776653  34444433

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=85.80  E-value=4.7  Score=29.32  Aligned_cols=60  Identities=13%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--e--cCe-Ec-CCCCccccCCCCCCCEEEEEcC
Q 023198          224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--F--KRQ-QL-EDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~--~g~-~L-~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .++...+..|||+.+...+.+.+.| ...-||-  |  ++- .| +.+.|+.+.+|..|.+|-+--|
T Consensus        15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r   80 (88)
T PF14836_consen   15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER   80 (88)
T ss_dssp             EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred             HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence            5566789999999999999999999 5557773  2  222 45 3557999999999998876543

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=85.73  E-value=4.7  Score=29.20  Aligned_cols=46  Identities=13%  Similarity=0.159  Sum_probs=36.4

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccc
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLA  269 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~  269 (286)
                      .|..+.+.++++.+..+|..+|.+++|+. ....+.|...  .|-.|+.
T Consensus        10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~   55 (86)
T cd06408          10 QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG   55 (86)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence            67899999999999999999999999995 4555666554  4555554

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=85.02  E-value=1.6  Score=43.22  Aligned_cols=174  Identities=14%  Similarity=0.098  Sum_probs=97.1

Q ss_pred             cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE---ECC-EE--eeccccccccccCCCCeEEEEee--cc-cc--eeE
Q 023198           73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIY---YGG-KL--IESYITLDVLNINNEDTLQMISV--PK-EL--QEI  141 (286)
Q Consensus        73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g-~~--L~D~~tL~~~~I~~~s~i~l~~~--~~-~~--~~I  141 (286)
                      +.+.+.|+...+++.+|+.|+...++|..-.+++   -++ ..  ..++.||+..  .++.+|.+.+.  +. +.  +.|
T Consensus       877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI  954 (1203)
T KOG4598|consen  877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKI  954 (1203)
T ss_pred             hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEE
Confidence            3677889999999999999999999998776664   233 22  3566777754  44554444332  22 11  333


Q ss_pred             Ee-----ecCCC---eEEEecCCCccHHhHHHHHHHHhcCCCCCC-----eE--EEe-----CCeee-cCCccccccc--
Q 023198          142 FV-----QTPTS---TVKLEVRRAHTVLDVKKMVESMRICIPSED-----CE--LFR-----GGEQL-QNLKTLAYYD--  198 (286)
Q Consensus       142 ~V-----~~~~g---~~~l~v~~~~tV~~lK~~I~~~~~gip~~~-----q~--L~~-----~g~~L-~d~~tL~~y~--  198 (286)
                      +.     +....   .+..-+..++||+..|.++-.+...+..+.     ++  +.-     -|+.+ +++.++.|-+  
T Consensus       955 ~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen  955 ILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred             EeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhh
Confidence            21     21122   223346788999999988765233222222     22  211     13333 3333232211  


Q ss_pred             c----------------CCCceEEEEeeeeeEEEEEeecceEEEe-----ecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198          199 I----------------KENEVLQIIRHVKHSIFVKLLNGRYIIL-----EVAKFDTVRDVKDKLFREIGQAPDSQRLV  256 (286)
Q Consensus       199 i----------------~~~~~i~l~~~~~~~i~vk~~~g~~~~l-----~v~~~~tV~~lK~~I~~~~gi~~~~q~L~  256 (286)
                      +                ++++.        +.++++-|.-.+..+     -+...+.+.++++.+.+..|||.+...+.
T Consensus      1035 ~~~~~~~qE~~deV~~~k~~~s--------L~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGES--------LPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred             hHHHHHHHHHHhhcccCCCCcc--------chhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhh
Confidence            1                12233        334444333222111     12345678899999999999999987663

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=84.65  E-value=3.8  Score=27.76  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=51.4

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhC---CCCCceEEE-ecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIG---QAPDSQRLV-FKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~-~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +|+...++.+++....-+.++--+..|   -|++.-.|. -+|..|+-++.+.|||+.+|.++.|.+.
T Consensus         4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK   71 (76)
T PF10790_consen    4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK   71 (76)
T ss_pred             CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence            577777888888888777777666654   577776664 4889999999999999999999998764

>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor

Probab=84.60  E-value=3.1  Score=29.23  Aligned_cols=50  Identities=16%  Similarity=0.170  Sum_probs=40.4

Q ss_pred             EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC
Q 023198          216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD  265 (286)
Q Consensus       216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~  265 (286)
                      .|-.++|...++.+.+++|++++-+-.+++.|+.|....|-.+-..++|.
T Consensus         3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~   52 (77)
T cd01818           3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH   52 (77)
T ss_pred             EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence            46678999999999999999999999999999999887664433334444

Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=84.60  E-value=0.47  Score=42.67  Aligned_cols=59  Identities=22%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             eEEEEEeecce--EEEeecCCcCcHHHHHHHHHHHhCC--CCCceEEEecCeEcCCCCccccC
Q 023198          213 HSIFVKLLNGR--YIILEVAKFDTVRDVKDKLFREIGQ--APDSQRLVFKRQQLEDDRNLASY  271 (286)
Q Consensus       213 ~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~~~g~~L~d~~tL~~y  271 (286)
                      +.++||..+.+  ...+..+...||++||.-+..-.-=  -+..|||+|.|+.|.|+.-|.|.
T Consensus        10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~   72 (391)
T KOG4583|consen   10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW   72 (391)
T ss_pred             eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence            45667777654  5677778899999999988776542  23569999999999999887765

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=84.19  E-value=5.5  Score=27.76  Aligned_cols=55  Identities=15%  Similarity=0.071  Sum_probs=41.8

Q ss_pred             EEEeecCCcCcHHHHHHHHHHHhCC----CCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          224 YIILEVAKFDTVRDVKDKLFREIGQ----APDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       224 ~~~l~v~~~~tV~~lK~~I~~~~gi----~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      ...++++...|+.+|.+.+..+.+-    ......+..+|+...     .++-+++|+.|.++.
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p   75 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP   75 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence            4567788899999999999988642    334556677888876     456788999998875

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>smart00455 RBD Raf-like Ras-binding domain

Probab=83.78  E-value=3  Score=28.87  Aligned_cols=43  Identities=23%  Similarity=0.254  Sum_probs=37.7

Q ss_pred             EeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCC
Q 023198          142 FVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGG  185 (286)
Q Consensus       142 ~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g  185 (286)
                      .|-.++| ...+.++|+.|+.++-+.+.+ +.|+.++...+...|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~-kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALK-KRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHH-HcCCCHHHEEEEEcC
Confidence            4556788 889999999999999999999 999999988888754

>KOG4261 consensus Talin [Cytoskeleton]

Probab=83.74  E-value=2.9  Score=41.88  Aligned_cols=107  Identities=21%  Similarity=0.354  Sum_probs=80.3

Q ss_pred             eEEEecCCCccHHhHHHHHHHHhcC---CCCCCeEEEe------CCeeecCCccccccccCCCceEEEEeeeeeEEEEEe
Q 023198          149 TVKLEVRRAHTVLDVKKMVESMRIC---IPSEDCELFR------GGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKL  219 (286)
Q Consensus       149 ~~~l~v~~~~tV~~lK~~I~~~~~g---ip~~~q~L~~------~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~i~vk~  219 (286)
                      +-++..+|+++|.|-=+.|.+ +.-   .-+..+.|..      .|.-|+.+++|.+|-..+++++.-.-+.+ ...|++
T Consensus        14 ~ktmqfepst~vyda~~~ire-~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r-~lkvrm   91 (1003)
T KOG4261|consen   14 VKTMQFEPSTLVYDACKVIRE-KFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR-PLKVRM   91 (1003)
T ss_pred             eeeeeecCchHHHHHHHHHHH-HhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc-cceeee
Confidence            667888899999886666655 431   1144444442      57789999999999999999987643333 567888


Q ss_pred             ecceEEEeecCCcCcHHHHHHHHHHHhCCCC-CceEEEe
Q 023198          220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRLVF  257 (286)
Q Consensus       220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~  257 (286)
                      +.|..-++.++.+.+|.+|---|+.+.||.- +.+.|.-
T Consensus        92 ldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvr  130 (1003)
T KOG4261|consen   92 LDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVR  130 (1003)
T ss_pred             cccccceeeecccccHHHHHHHHHhccCccchhhhhhhH
Confidence            9998888999999999999999999999744 4454543

>PRK06437 hypothetical protein; Provisional

Probab=83.65  E-value=12  Score=25.62  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=42.8

Q ss_pred             CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      ++...+++....||.+|=+.    .|++++.-.+..+|..+.     .++-+++|+.+.++-.
T Consensus        10 ~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~   63 (67)
T PRK06437         10 HINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV   63 (67)
T ss_pred             CcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence            56677888888899888765    588888888889999886     5677888998887643

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=83.16  E-value=2.5  Score=38.57  Aligned_cols=64  Identities=11%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC--CccccCCCCCCCEEEEEcC
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD--RNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~--~tL~~y~I~~~~~l~l~~~  284 (286)
                      ..+.+.+.+...-...+++..+...+|++.+..-|+|+++++.++  .+|..||.+.++++.+-.+
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k   76 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK   76 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence            456788899999999999999999999999999999999999865  5789999999999877543

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=82.37  E-value=13  Score=25.45  Aligned_cols=51  Identities=14%  Similarity=0.046  Sum_probs=39.3

Q ss_pred             EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      ...+++++..|+.+|-+.+    ++++..-.+..+|.....     ++-+++|+.|.++.
T Consensus        15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~   65 (70)
T PRK08364         15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP   65 (70)
T ss_pred             ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence            5567788889999887555    788777777889998853     66688899888763

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=82.34  E-value=1.9  Score=39.71  Aligned_cols=68  Identities=24%  Similarity=0.354  Sum_probs=54.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCC-CCCceEEE--ecCeEcC-CCCccccCCCCCCCEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ-APDSQRLV--FKRQQLE-DDRNLASYKIVNESIVN  280 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi-~~~~q~L~--~~g~~L~-d~~tL~~y~I~~~~~l~  280 (286)
                      -+|-|+..+|+-+...++.++||.+++.-|+.-..- +...+.|+  |.-++|. ++.||++.|+.+...+.
T Consensus       306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq  377 (380)
T KOG2086|consen  306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ  377 (380)
T ss_pred             ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence            668888899999999999999999999999877654 33445553  7888886 55799999998766543

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=81.31  E-value=6.2  Score=27.98  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec
Q 023198          224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK  258 (286)
Q Consensus       224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~  258 (286)
                      |+.+.+.+..+..+|..+|.++...+++.-.|.|.
T Consensus         8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~   42 (78)
T cd06411           8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR   42 (78)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence            67789999999999999999999999999999884

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		3e-19
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		4e-19
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		4e-19
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		5e-19
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		6e-19
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		4e-11
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		1e-10
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-10
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		1e-10
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		1e-10
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		1e-10
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		1e-10
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		1e-10
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		1e-10
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		1e-10
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-10
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		1e-10
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		1e-10
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		1e-10
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		1e-10
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-10
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		1e-10
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		1e-10
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-10
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-10
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-10
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-10
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-10
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-10
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-10
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-10
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		2e-10
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		2e-10
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		2e-10
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-10
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		2e-10
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		2e-10
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		2e-10
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		2e-10
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-10
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		2e-10
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		2e-10
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		3e-10
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-10
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-10
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		3e-10
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		4e-10
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		4e-10
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		4e-10
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-10
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		5e-10
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		6e-10
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		8e-10
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		8e-10
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		9e-10
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		2e-09
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		2e-09
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		2e-09
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		3e-09
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		4e-09
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		4e-09
3h7s_A	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-09
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		6e-09
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		1e-08
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		1e-08
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		2e-08
4hk2_A	78	U7ub25.2540 Length = 78		9e-08
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		9e-08
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		3e-07
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		3e-06
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-05
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-05
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		2e-05
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		2e-05
1ndd_B	76	Structure Of Nedd8 Length = 76		2e-05
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-05
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		2e-05
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-05
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		5e-05
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		2e-04

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 22  QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 199 IKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
           I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
           F  +QLED R L+ Y I  ES ++L
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHL 165

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 4   QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 199 IKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
           I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+
Sbjct: 63  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 122
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
           F  +QLED R L+ Y I  ES ++L
Sbjct: 123 FAGKQLEDGRTLSDYNIQKESTLHL 147

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
           I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
           F  +QLED R L+ Y I  ES ++L
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHL 145

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
           I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
           F  +QLED R L+ Y I  ES ++L
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHL 145

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVKH--SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
           I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
           F  +QLED R L+ Y I  ES ++L
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHL 145

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 46/78 (58%)
Query: 204 VLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE 263
           + +   H    IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLE
Sbjct: 97  IYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 156
Query: 264 DDRNLASYKIVNESIVNL 281
           D R L+ Y I  ES ++L
Sbjct: 157 DGRTLSDYNIQKESTLHL 174

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 207 IIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDR 266
           + R     IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R
Sbjct: 15  VPRGSHMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 74
Query: 267 NLASYKIVNESIVNL 281
            L+ Y I  ES ++L
Sbjct: 75  TLSDYNIQKESTLHL 89

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 8   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 67
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 68  KESTLHL 74

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 66  KESTLHL 72

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%)
Query: 196 YYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL 255
           Y D   +  ++    +   IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL
Sbjct: 19  YIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 78
Query: 256 VFKRQQLEDDRNLASYKIVNESIVNL 281
           +F  +QLED R L+ Y I  ES ++L
Sbjct: 79  IFAGKQLEDGRTLSDYNIQKESTLHL 104

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 11  IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSEYNIQ 70
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 71  KESTLHL 77

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 5   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 64
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 65  KESTLHL 71

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 66  KESTLHL 72

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 7   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 66
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 67  KESTLHL 73

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 6   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 66  KESTLHL 72

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 63
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 64  KESTLHL 70

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 63
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 64  KESTLHL 70

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 66  RESTLHL 72

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 236 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 295
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 296 KESTLHL 302

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 25  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 84
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 85  KESTLHL 91

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFV  L+G++I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 20  IFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 79
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 80  KESTLHL 86

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 38  IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 97
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 98  KESTLHL 104

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  RESTLHL 69

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+   LEV   DT+ +VK K+  +IG  PD QRL+F  +QLED R L+ Y I 
Sbjct: 4   IFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYNIQ 63
Query: 275 NESIVNL 281
            ES ++ 
Sbjct: 64  KESTLHC 70

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  RESTLHL 69

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLE+ R LA Y I 
Sbjct: 3   IFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F   QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  RESTLHL 69

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I L+V   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD Q+L+F R+QLED R L+ Y I 
Sbjct: 5   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDYNIH 64
Query: 275 NESIVNL 281
            ES + L
Sbjct: 65  KESFLYL 71

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVN 280
            ES ++
Sbjct: 63  KESTLH 68

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G A D QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFV  L G +I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 20  IFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 79
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 80  KESTLHL 86

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFV+ L GR I LEV   DT+ +V+ ++    G  PD QRL+F  +QLED R LA Y I 
Sbjct: 10  IFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYNIQ 69
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 70  RESTLHL 76

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 40/63 (63%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L GR IILEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 6   IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIH 65
Query: 275 NES 277
           N S
Sbjct: 66  NHS 68

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IF K L G+ I LEV   DT+ +VK K+  + G  PD QRL++  +QLED R L+ Y I 
Sbjct: 12  IFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQ 71
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 72  RESTLHL 78

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  P  QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G  I LEV   DT+ +VK K+    G  PD Q L+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +Q ED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES  +L
Sbjct: 63  KESTXHL 69

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  +    PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIV 279
             S +
Sbjct: 66  KWSTL 70

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  +    PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +F+K L G+ + +EV   DTV + K K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   VFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTIHL 69

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ-----APDSQRLVFKRQQLEDDRNLA 269
           IFVK L G+ I LEV   DT+ +VK K+  + G+      PD QRL+F  +QLED R L+
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRTLS 62
Query: 270 SYKIVNESIVNL 281
            Y I  ES ++L
Sbjct: 63  DYNIQKESTLHL 74

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I ++V   DTV  VK K++ + G  PD QRL+F  +QLED   ++ Y + 
Sbjct: 8   IFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSDYNVQ 67
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 68  KESTLHL 74

>pdb|3H7S|A Chain A, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin Reveal A Highly Extended Chain Architecture Length = 76

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +FVK L G+ + +E+   DTV ++K K+  + G  PD QRL+F  +QLED R L+ Y + 
Sbjct: 3   LFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNLQ 62
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTIHL 69

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 215 IFVK-------LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRN 267
           IFVK       L+ G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R 
Sbjct: 3   IFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 62
Query: 268 LASYKIVNESIVNL 281
           L+ Y I  ES ++L
Sbjct: 63  LSDYNIQKESTLHL 76

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   D++  +K K+  + G  PD QRL+F  +QLE+ + L+ Y I 
Sbjct: 6   IFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQ 65
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 66  KESTLHL 72

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +F+K L G+   +E+   DT+ ++K K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 12  LFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 71
Query: 275 NESIVNL 281
            ES ++L
Sbjct: 72  KESTLHL 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK   G+   LEV   DT+ +VK K+  ++G  PD Q L+F  ++LED R L+ Y I 
Sbjct: 5   IFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDYNIQ 64
Query: 275 NESIV 279
            ES +
Sbjct: 65  KESTL 69

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKL--------FREIGQAPDSQRLVFKRQQLEDDR 266
           IFVK L G+ I LEV   DT+ +VK K+            G  PD QRL+F  +QLED R
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLEDGR 62
Query: 267 NLASYKIVNESIVNL 281
            L+ Y I  ES ++L
Sbjct: 63  TLSDYNIQKESTLHL 77

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 215 IFVKLLNG--------RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDR 266
           IFVK L G        + I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R
Sbjct: 3   IFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 62
Query: 267 NLASYKIVNESIVNL 281
            L+ Y I  ES ++L
Sbjct: 63  TLSDYNIQKESTLHL 77

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE 263
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLE
Sbjct: 5   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 8   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 67
Query: 275 NESIVNL 281
             S+++L
Sbjct: 68  GGSVLHL 74

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 15  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 74
Query: 275 NESIVNL 281
             S+++L
Sbjct: 75  GGSVLHL 81

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 4   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 63
Query: 275 NESIVNL 281
             S+++L
Sbjct: 64  GGSVLHL 70

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 5   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 64
Query: 275 NESIVNL 281
             S+++L
Sbjct: 65  GGSVLHL 71

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 275 NESIVNL 281
             S+++L
Sbjct: 63  GGSVLHL 69

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 9   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 68
Query: 275 NESIVNL 281
             S+++L
Sbjct: 69  GGSVLHL 75

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 275 NESIVNL 281
             S+++L
Sbjct: 63  GGSVLHL 69

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 15  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 74
Query: 275 NESIVNL 281
             S+++L
Sbjct: 75  GGSVLHL 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q  D++  A YKI 
Sbjct: 8   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAADYKIX 67
Query: 275 NESIVNL 281
             S+++L
Sbjct: 68  GGSVLHL 74

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   DT+  +K+++  + G  P  QRL++  +QL DD+    Y I 
Sbjct: 3   IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62
Query: 275 NESIVNL 281
             S+++L
Sbjct: 63  GGSVLHL 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	2e-23
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	2e-17
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	7e-16
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	5e-22
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	9e-20
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	4e-06
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	8e-22
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	5e-19
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	5e-18
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-18
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-11
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	7e-07
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	9e-07
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-18
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	3e-11
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	4e-08
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-08
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	3e-18
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	8e-11
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	2e-07
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-07
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	6e-18
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-10
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-07
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-06
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	1e-17
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	7e-10
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	4e-07
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	4e-06
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	4e-17
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-12
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-08
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-06
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	7e-17
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-12
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	5e-07
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	3e-06
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	9e-17
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-14
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-06
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	9e-06
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	2e-16
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	6e-12
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	2e-07
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	2e-16
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-12
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	9e-08
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-05
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	2e-16
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	1e-09
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	7e-06
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	1e-05
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	4e-16
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	8e-11
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	7e-06
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-04
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	4e-16
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	5e-12
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	7e-09
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	1e-06
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	5e-16
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-08
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	7e-06
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	1e-05
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	6e-16
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	5e-12
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	4e-07
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-05
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	7e-16
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	8e-10
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-06
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	9e-06
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	7e-16
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	2e-08
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	2e-06
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	7e-06
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	1e-15
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-11
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	5e-08
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	9e-07
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	1e-15
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	5e-12
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	8e-07
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-06
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	1e-15
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	3e-12
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	1e-06
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-05
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-15
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-09
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-06
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	4e-06
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-15
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	2e-08
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	2e-05
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	7e-04
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-15
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-09
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	4e-06
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	4e-05
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	3e-15
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	3e-12
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	3e-06
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	4e-05
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	4e-15
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-11
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	1e-06
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	7e-05
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	4e-15
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	6e-09
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-05
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-05
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	4e-15
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	3e-10
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	1e-08
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	1e-07
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	5e-15
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-10
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-06
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-04
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	5e-15
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	8e-10
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	2e-07
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	2e-06
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	1e-14
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	5e-12
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	1e-08
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	7e-06
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	1e-14
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-10
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-09
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	4e-09
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	1e-14
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-08
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	1e-05
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	4e-05
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	1e-14
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	2e-14
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-09
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	3e-04
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	1e-14
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	4e-10
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	1e-07
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	4e-07
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	1e-14
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	3e-08
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	1e-04
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-04
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	2e-14
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	5e-10
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	4e-07
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	4e-07
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-14
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	6e-08
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	4e-06
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-04
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-14
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	8e-08
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	1e-05
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	1e-04
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	5e-14
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	2e-09
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	3e-04
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	6e-04
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	2e-13
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	1e-06
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	2e-05
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-12
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-08
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	1e-04
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	6e-04
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	5e-12
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	9e-07
1we6_A	111	Splicing factor, putative; structural genomics, ub	8e-12
1we6_A	111	Splicing factor, putative; structural genomics, ub	1e-07
1we6_A	111	Splicing factor, putative; structural genomics, ub	2e-05
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	8e-12
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	2e-09
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	5e-06
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	5e-09
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	4e-07
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	8e-04
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	2e-08
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	3e-08
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	1e-07
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	7e-07
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	6e-06
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	1e-04
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	1e-05
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	1e-04
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-04
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	2e-05
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-04
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	1e-04
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	1e-04
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-04
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	2e-04
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	2e-04
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	6e-04
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-04

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 93.1 bits (231), Expect = 2e-23
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELF--RGGEQLQNLKTLAY 196
           ++ V+    +  ++ +  + +V ++K  +   +I + +    L     G  LQ+   LA 
Sbjct: 4   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQ-KIGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 197 YDIKENEVL---QIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQ 253
             +     +           SI V+   GR    EV    TV  +K ++    G   D  
Sbjct: 63  QGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF 122

Query: 254 RLVFKRQQLEDDRNLASYKIVNESIVNLT 282
            L F+ + LED   L  Y +   S V + 
Sbjct: 123 WLTFEGKPLEDQLPLGEYGLKPLSTVFMN 151

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 76.5 bits (188), Expect = 2e-17
 Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 6/153 (3%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY--GGKLIESYITLD 119
             L  K       F++  + S ++  +K  I  + G+   +  +     G  ++  + L 
Sbjct: 3   WDLTVKML-AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 120 VLNINNEDTL-QMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSE 177
              +    T+  ++    E   I V+     +   EVR   TV  +K+ V      +  +
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVS-GLEGVQDD 120

Query: 178 DCELFRGGEQLQNLKTLAYYDIKENEVLQIIRH 210
              L   G+ L++   L  Y +K    + +   
Sbjct: 121 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 72.3 bits (177), Expect = 7e-16
 Identities = 18/135 (13%), Positives = 51/135 (37%), Gaps = 3/135 (2%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSG 60
           + +  +  + +LK +I  K+     +    +  +G  L++ + +   G+   S +     
Sbjct: 17  VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76

Query: 61  VMKLY---FKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
                       +  ++   +   + T+ ++K  +   EG+    + + + GK +E  + 
Sbjct: 77  KSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLP 136

Query: 118 LDVLNINNEDTLQMI 132
           L    +    T+ M 
Sbjct: 137 LGEYGLKPLSTVFMN 151

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 89.3 bits (221), Expect = 5e-22
 Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 5/161 (3%)

Query: 124 NNEDTLQMISVPKELQEIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELF 182
           ++  +  ++     +Q IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L 
Sbjct: 7   HHHHSSGLVPRGSHMQ-IFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLI 64

Query: 183 RGGEQLQNLKTLAYYDIKENEVLQIIRHVK--HSIFVKLLNGRYIILEVAKFDTVRDVKD 240
             G+QL++ +TL+ Y+I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK 
Sbjct: 65  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 124

Query: 241 KLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           K+  + G  PD QRL+F  +QLED R L+ Y I  ES ++L
Sbjct: 125 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 165

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 83.2 bits (205), Expect = 9e-20
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 3/166 (1%)

Query: 46  DYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDI 105
            +   ++S +      M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  +
Sbjct: 5   HHHHHHSSGLVPRGSHMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 63

Query: 106 YYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPT-STVKLEVRRAHTVLDVK 164
            + GK +E   TL   NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK
Sbjct: 64  IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVK 123

Query: 165 KMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRH 210
             ++  +  IP +   L   G+QL++ +TL+ Y+I++   L ++  
Sbjct: 124 AKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 6   TEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
           ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 116 SDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 164

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 88.2 bits (218), Expect = 8e-22
 Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 4/146 (2%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IKENEVLQIIRHVK--HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
           I++   L ++  ++    IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 257 FKRQQLEDDRNLASYKIVNESIVNLT 282
           F  +QLED R L+ Y I  ES ++L 
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLV 146

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 80.8 bits (199), Expect = 5e-19
 Identities = 51/150 (34%), Positives = 86/150 (57%), Gaps = 3/150 (2%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 1   MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59

Query: 122 NINNEDTLQMISVPKELQEIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCE 180
           NI  E TL ++   +   +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   
Sbjct: 60  NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQR 118

Query: 181 LFRGGEQLQNLKTLAYYDIKENEVLQIIRH 210
           L   G+QL++ +TL+ Y+I++   L ++  
Sbjct: 119 LIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 78.1 bits (192), Expect = 5e-18
 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH--ND 58
           ++V+ ++ IE +K +I    +E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 59  SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
                  F      KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132

Query: 119 DVLNINNEDTLQMI 132
              NI  E TL ++
Sbjct: 133 SDYNIQKESTLHLV 146

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 79.1 bits (195), Expect = 2e-18
 Identities = 4/67 (5%), Positives = 14/67 (20%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
                +  +     V +F  V               + +       +  + ++ +    V
Sbjct: 3   DTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYV 62

Query: 275 NESIVNL 281
                  
Sbjct: 63  QVRQPIF 69

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 3/71 (4%), Positives = 10/71 (14%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M          +           +     I E  +                       ++
Sbjct: 1   MSDTEAPVEV-QEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLV 59

Query: 122 NINNEDTLQMI 132
           +         +
Sbjct: 60  DYVQVRQPIFV 70

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 6/70 (8%), Positives = 15/70 (21%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
                          V     V+    + E       +E     +   +   +K  +  D
Sbjct: 2   SDTEAPVEVQEDFEVVEEFTPVVLATPIPE-EVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 199 IKENEVLQII 208
             +      +
Sbjct: 61  YVQVRQPIFV 70

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 1/56 (1%), Positives = 9/56 (16%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
            V++   +            ++   ++        +                   
Sbjct: 15 EVVEEFTPVVLATPIPEEV--QQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQPI 68

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 20/67 (29%), Positives = 31/67 (46%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + ++L  G+ + L V   DTV  +K +L    G  P SQR  F  + L D       KI 
Sbjct: 26  LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIP 85

Query: 275 NESIVNL 281
            + +V +
Sbjct: 86  KDYVVQV 92

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 57  NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYI 116
           N     +L  +  S  K  +L    +DT+ ++K  +   EG+       ++ G+ +   +
Sbjct: 19  NSGYECQLRLRL-STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKM 77

Query: 117 TLDVLNINNEDTLQMI 132
             + L I  +  +Q+I
Sbjct: 78  KFEELKIPKDYVVQVI 93

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           ++ ++  T   +KL VR   TV  +K+ + +    +       F  G  L +        
Sbjct: 25  QLRLRLSTGKDLKLVVRSTDTVFHMKRRLHA-AEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 199 IKENEVLQII 208
           I ++ V+Q+I
Sbjct: 84  IPKDYVVQVI 93

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          + V+ T+ +  +K R+HA   E +       F++G+ L + +   +  IP + V+ 
Sbjct: 38 LVVRSTDTVFHMKRRLHAA--EGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQ 91

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 76.5 bits (189), Expect = 3e-18
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62

Query: 275 NESIVNL 281
             S+++L
Sbjct: 63  GGSVLHL 69

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 56.1 bits (136), Expect = 8e-11
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M +  KT +  K  E+    +D +E IK  +E +EGIP  +  + Y GK +    T    
Sbjct: 1   MLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59

Query: 122 NINNEDTLQMI 132
            I     L ++
Sbjct: 60  KILGGSVLHLV 70

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            I V+T T   +++++     V  +K+ VE  +  IP +   L   G+Q+ + KT A Y 
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDKVERIKERVEE-KEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 199 IKENEVLQII 208
           I    VL ++
Sbjct: 61  ILGGSVLHLV 70

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++ T+K+E++K R+  K  E I      L Y+G+Q+ +  T  DY I   SV+H
Sbjct: 17 IEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 68

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 75.8 bits (187), Expect = 6e-18
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62

Query: 275 NESIVNL 281
             S+++L
Sbjct: 63  GGSVLHL 69

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M +  KT +  K  E+    +D +E IK  +E +EGIP  +  + Y GK +    T    
Sbjct: 1   MLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59

Query: 122 NINNEDTLQMI 132
            I     L ++
Sbjct: 60  KILGGSVLHLV 70

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            I V+T T   +++++     V  +K+ VE  +  IP +   L   G+Q+ + KT A Y 
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDKVERIKERVEE-KEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 199 IKENEVLQII 208
           I    VL ++
Sbjct: 61  ILGGSVLHLV 70

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++ T+K+E++K R+  K  E I      L Y+G+Q+ +  T  DY I   SV+H
Sbjct: 17 IEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 68

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 74.6 bits (184), Expect = 1e-17
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + VK L GR   L+V + + V  +K  +  ++      QRL+FK + L D + L+ Y I 
Sbjct: 10  LTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIG 69

Query: 275 NESIVNL 281
             S +NL
Sbjct: 70  PNSKLNL 76

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 59  SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
           S  M+L  K     +   L+    + +  +K ++  +  +PV +  + + GK +     L
Sbjct: 5   SSGMQLTVKALQG-RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRL 63

Query: 119 DVLNINNEDTLQMI 132
              +I     L ++
Sbjct: 64  SDYSIGPNSKLNLV 77

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           ++ V+        L+V     V  +K++V   ++ +P     L   G+ L + K L+ Y 
Sbjct: 9   QLTVKALQGRECSLQVPEDELVSTLKQLVSE-KLNVPVRQQRLLFKGKALADGKRLSDYS 67

Query: 199 IKENEVLQII 208
           I  N  L ++
Sbjct: 68  IGPNSKLNLV 77

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V + E +  LK  +  K    +      L + G+ L +G  + DY I  NS ++
Sbjct: 24 VPEDELVSTLKQLVSEK--LNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLN 75

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 73.5 bits (181), Expect = 4e-17
 Identities = 32/67 (47%), Positives = 41/67 (61%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65

Query: 275 NESIVNL 281
             S + L
Sbjct: 66  KWSTLFL 72

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 4   MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62

Query: 122 NINNEDTLQMI 132
           NI    TL ++
Sbjct: 63  NIQKWSTLFLL 73

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL++ +TL+ Y+
Sbjct: 5   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 199 IKENEVLQII 208
           I++   L ++
Sbjct: 64  IQKWSTLFLL 73

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V+ ++ IE +K +I    +E I  D   L +AG+QLE+G T+ DY I   S + 
Sbjct: 18 LEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLF 71

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 73.2 bits (180), Expect = 7e-17
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   D V  +K+++  + G  P  QRL++  +Q+ D++  A YKI+
Sbjct: 15  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 74

Query: 275 NESIVNL 281
             S+++L
Sbjct: 75  GGSVLHL 81

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 59  SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
            G M +  KT +  K  E+    +D +E IK  +E +EGIP  +  + Y GK +    T 
Sbjct: 10  GGSMLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA 68

Query: 119 DVLNINNEDTLQMI 132
               I     L ++
Sbjct: 69  ADYKILGGSVLHLV 82

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            I V+T T   +++++     V  +K+ VE  +  IP +   L   G+Q+ + KT A Y 
Sbjct: 14  LIKVKTLTGKEIEIDIEPTDKVERIKERVEE-KEGIPPQQQRLIYSGKQMNDEKTAADYK 72

Query: 199 IKENEVLQII 208
           I    VL ++
Sbjct: 73  ILGGSVLHLV 82

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++ T+K+E++K R+  K  E I      L Y+G+Q+ +  T  DY I   SV+H
Sbjct: 29 IEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 80

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 73.1 bits (180), Expect = 9e-17
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 187 QLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFRE 245
              +   ++ YDI   E L        S+ + + +G+    + VA   TV   K+ + + 
Sbjct: 3   HHHHHHPMSDYDIPTTENLYFQG--AMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKA 60

Query: 246 IGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
            G    +QRL++  + L+DD+ + SY I +   V+L
Sbjct: 61  NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHL 96

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 66.2 bits (162), Expect = 3e-14
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 36  QQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVR 95
           +   +   + DY IP    ++     M L     S +  +E+      T+   K  I   
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYFQGA-MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKA 60

Query: 96  EGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
            GIPV    + Y GK+++   T++  +I +  ++ ++
Sbjct: 61  NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V     + + K  I+      I      L Y+G+ L++  TV  Y I +   +H
Sbjct: 44 VAPESTVLQFKEAINKA--NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 95

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 110 KLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVES 169
           K    +  +   +I   + L           I +++     ++ V    TVL  K+ +  
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYFQG--AMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINK 59

Query: 170 MRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVL 205
               IP  +  L   G+ L++ +T+  Y I++   +
Sbjct: 60  -ANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSV 94

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 72.6 bits (178), Expect = 2e-16
 Identities = 35/86 (40%), Positives = 49/86 (56%)

Query: 196 YYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL 255
           Y D   +  ++    +   IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL
Sbjct: 19  YIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 78

Query: 256 VFKRQQLEDDRNLASYKIVNESIVNL 281
           +F  +QLED R L+ Y I  ES ++L
Sbjct: 79  IFAGKQLEDGRTLSDYNIQKESTLHL 104

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 60.3 bits (146), Expect = 6e-12
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 31  LFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKF 90
                  +E     ID               M+++ KT +  KT  L+   SDTIEN+K 
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELLA-MQIFVKTLTG-KTITLEVEPSDTIENVKA 63

Query: 91  IIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
            I+ +EGIP  +  + + GK +E   TL   NI  E TL ++
Sbjct: 64  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 105

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 107 YGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKK 165
           Y     + +I  D L I+  +   +        +IFV+T T  T+ LEV  + T+ +VK 
Sbjct: 4   YIDTNNDGWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKA 63

Query: 166 MVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208
            ++     IP +   L   G+QL++ +TL+ Y+I++   L ++
Sbjct: 64  KIQDKE-GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 105

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 34/67 (50%), Positives = 42/67 (62%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L GR IILEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 6   IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIH 65

Query: 275 NESIVNL 281
           N S + L
Sbjct: 66  NHSALYL 72

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M++  KT    +T  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 4   MRIVVKTLMG-RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62

Query: 122 NINNEDTLQMI 132
           NI+N   L ++
Sbjct: 63  NIHNHSALYLL 73

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            I V+T    T+ LEV  + T+ +VK  ++     IP +   L   G+QL++ +TL+ Y+
Sbjct: 5   RIVVKTLMGRTIILEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 199 IKENEVLQII 208
           I  +  L ++
Sbjct: 64  IHNHSALYLL 73

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V+ ++ IE +K +I    +E I  D   L +AG+QLE+G T+ DY I N+S ++
Sbjct: 18 LEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALY 71

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 15/65 (23%), Positives = 32/65 (49%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + VK L+ +     V     V++ K+ +   +    + QRL+++ + L+DD+ L  Y +
Sbjct: 7   EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV 66

Query: 274 VNESI 278
             + I
Sbjct: 67  GGKVI 71

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
           +   +++  KT  + +T          ++  K  I     IP  +  + Y G++++    
Sbjct: 2   EPDSLEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKK 60

Query: 118 LDVLNINNEDTLQMISVPKELQEIFVQTPT 147
           L   N+  +  + ++        +     +
Sbjct: 61  LQEYNVGGK-VIHLVERAPPQTHLPSGASS 89

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           E+ V+T  S T    V     V + K+ + +  + IPSE   L   G  LQ+ K L  Y+
Sbjct: 7   EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAA-SVSIPSEKQRLIYQGRVLQDDKKLQEYN 65

Query: 199 IKEN 202
           +   
Sbjct: 66  VGGK 69

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V     +++ K  I A     I  +   L Y G+ L++   + +Y +    VIH
Sbjct: 22 VGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIH 72

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 70.7 bits (174), Expect = 4e-16
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK-RQQLEDDRNLASYKI 273
             V+ LNG    LEV   DT+  VK K+ R        Q L+      L +D  +   +I
Sbjct: 13  FLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQI 72

Query: 274 VNESIVNL 281
           V  S + L
Sbjct: 73  VPTSDIQL 80

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 56  HNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLI-ES 114
           H+    MK   +  +   +FEL+ +  DT+  +K  IE  + IPV +  +   G +I   
Sbjct: 5   HHHHSHMKFLVENLNG-SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRE 63

Query: 115 YITLDVLNINNEDTLQMI 132
            +T++   I     +Q+ 
Sbjct: 64  DLTVEQCQIVPTSDIQLE 81

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +  V+    S+ +LEV    T+L VK+ +E  +    S+   +  G   L+   T+    
Sbjct: 12  KFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQ 71

Query: 199 IKENEVLQII 208
           I     +Q+ 
Sbjct: 72  IVPTSDIQLE 81

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQ-LENGLTVIDYGIPNNSVIH 56
          V   + +  +K +I     + I      L   G   L   LTV    I   S I 
Sbjct: 27 VDYRDTLLVVKQKIERS--QHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQ 79

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +FVK  +G      +     +  +K ++  + G     Q+L F+ Q L+D   L  Y I 
Sbjct: 10  VFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQ 69

Query: 275 NESIVNL 281
           +   + L
Sbjct: 70  DSDTLIL 76

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
            S  ++++ K P    ++    N +  I  +K  IE ++G+P  +  + + G++++ ++ 
Sbjct: 4   GSSGIQVFVKNPDG-GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLG 62

Query: 118 LDVLNINNEDTLQMI 132
           L +  I + DTL + 
Sbjct: 63  LGIYGIQDSDTLILS 77

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           ++FV+ P   +    +     +L +K+ +E  +  +P +  +L   G+ LQ+   L  Y 
Sbjct: 9   QVFVKNPDGGSYAYAINPNSFILGLKQQIED-QQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 199 IKENEVLQIIRH 210
           I++++ L + + 
Sbjct: 68  IQDSDTLILSKK 79

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          +     I  LK +I  +  + + +   +L + GQ L++ L +  YGI ++  + 
Sbjct: 24 INPNSFILGLKQQIEDQ--QGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLI 75

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 70.8 bits (174), Expect = 5e-16
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + VK L+ +     V     V++ K+ +   +    + QRL+++ + L+DD+ L  Y + 
Sbjct: 20  VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVG 79

Query: 275 NESI 278
            + I
Sbjct: 80  GKVI 83

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 57  NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYI 116
            +   +++  KT  + +T          ++  K  I     IP  +  + Y G++++   
Sbjct: 13  EEPDSLEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDK 71

Query: 117 TLDVLNINNEDTLQMI 132
            L   N+  +  + ++
Sbjct: 72  KLQEYNVGGK-VIHLV 86

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V     +++ K  I A     I  +   L Y G+ L++   + +Y +    VIH
Sbjct: 34 VGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIH 84

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           E+ V+T  S T    V     V + K+ + +  + IPSE   L   G  LQ+ K L  Y+
Sbjct: 19  EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAA-SVSIPSEKQRLIYQGRVLQDDKKLQEYN 77

Query: 199 IKEN 202
           +   
Sbjct: 78  VGGK 81

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 70.6 bits (173), Expect = 6e-16
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 63

Query: 275 NESIVNL 281
            ES ++L
Sbjct: 64  KESTLHL 70

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 60.2 bits (146), Expect = 5e-12
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 2   MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 122 NINNEDTLQMI 132
           NI  E TL ++
Sbjct: 61  NIQKESTLHLV 71

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL++ +TL+ Y+
Sbjct: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFAGKQLEDGRTLSDYN 61

Query: 199 IKENEVLQII 208
           I++   L ++
Sbjct: 62  IQKESTLHLV 71

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V+ ++ IE +K +I    +E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 16 LEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 69

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 70.9 bits (174), Expect = 7e-16
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + VK    +     V    T++ +K+++ +     PD   L+F  + L+D  +LA   +
Sbjct: 19  KVTVKTPKDKEDF-SVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 77

Query: 274 VNESIVNL 281
            +   V+L
Sbjct: 78  RDGLTVHL 85

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 57  NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYI 116
            D  ++K+  KTP +++ F +    + TI+ +K  I  R      +  + + GK+++   
Sbjct: 13  QDPHLIKVTVKTPKDKEDFSVTD--TCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPD 70

Query: 117 TLDVLNINNEDTLQMI 132
           +L    + +  T+ ++
Sbjct: 71  SLAQCGVRDGLTVHLV 86

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V  T  I++LK  I  +   +   D   L +AG+ L++  ++   G+ +   +H
Sbjct: 33 VTDTCTIQQLKEEISQR--FKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVH 84

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 140 EIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
           ++ V+TP       V    T+  +K+ +   R     +   L   G+ L++  +LA   +
Sbjct: 19  KVTVKTPKDKEDFSVTDTCTIQQLKEEISQ-RFKAHPDQLVLIFAGKILKDPDSLAQCGV 77

Query: 200 KENEVL 205
           ++   +
Sbjct: 78  RDGLTV 83

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 70.9 bits (174), Expect = 7e-16
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + VK    +     V +  +V+  K+++ +      D   L+F  + L+D   L+ + I 
Sbjct: 28  VTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIH 86

Query: 275 NESIVNL 281
           +   V+L
Sbjct: 87  DGLTVHL 93

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
              +MK+  KTP  ++ F +    + +++  K  I  R      +  + + GK+++   T
Sbjct: 22  HPKIMKVTVKTPKEKEEFAVPE--NSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDT 79

Query: 118 LDVLNINNEDTLQMI 132
           L    I++  T+ ++
Sbjct: 80  LSQHGIHDGLTVHLV 94

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V +   +++ K  I  +   +   D   L +AG+ L++  T+  +GI +   +H
Sbjct: 41 VPENSSVQQFKEEISKR--FKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVH 92

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 140 EIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
           ++ V+TP    +  V    +V   K+ +   R    ++   L   G+ L++  TL+ + I
Sbjct: 27  KVTVKTPKEKEEFAVPENSSVQQFKEEISK-RFKSHTDQLVLIFAGKILKDQDTLSQHGI 85

Query: 200 KENEVL 205
            +   +
Sbjct: 86  HDGLTV 91

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 13/67 (19%), Positives = 35/67 (52%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +FV+  +     +EV    ++  +K+ + ++ G   D  R++F  ++L +   + +  + 
Sbjct: 3   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLE 62

Query: 275 NESIVNL 281
            +SIV++
Sbjct: 63  QQSIVHI 69

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 10/71 (14%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M ++ +  S+   F ++ +   +I  +K ++  ++G+P  +  + + GK + +++T+   
Sbjct: 1   MIVFVRFNSS-YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNC 59

Query: 122 NINNEDTLQMI 132
           ++  +  + ++
Sbjct: 60  DLEQQSIVHIV 70

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 15/71 (21%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 141 IFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
           +FV+  +S    +EV    ++L +K++V   +  +P++   +   G++L N  T+   D+
Sbjct: 3   VFVRFNSSYGFPVEVDSDTSILQLKEVVAK-QQGVPADQLRVIFAGKELPNHLTVQNCDL 61

Query: 200 KENEVLQIIRH 210
           ++  ++ I++ 
Sbjct: 62  EQQSIVHIVQR 72

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V     I +LK  +  +  + +  D   + +AG++L N LTV +  +   S++H
Sbjct: 15 VEVDSDTSILQLKEVVAKQ--QGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVH 68

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  RESTLHL 69

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 1   MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59

Query: 122 NINNEDTLQMI 132
           NI  E TL ++
Sbjct: 60  NIQRESTLHLV 70

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IKENEVLQII 208
           I+    L ++
Sbjct: 61  IQRESTLHLV 70

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 15 LEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLH 68

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 27/67 (40%), Positives = 42/67 (62%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +F+K L G+   +E+   DT+ ++K K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 12  LFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 71

Query: 275 NESIVNL 281
            ES ++L
Sbjct: 72  KESTLHL 78

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 56  HNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY 115
           H+    ++L+ KT +  KTF ++   SDTIEN+K  I+ +EGIP  +  + + GK +E  
Sbjct: 4   HHHLQGLQLFIKTLTG-KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG 62

Query: 116 ITLDVLNINNEDTLQMI 132
            TL   NI  E TL ++
Sbjct: 63  RTLSDYNIQKESTLHLV 79

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           ++F++T T  T  +E+  + T+ ++K  ++     IP +   L   G+QL++ +TL+ Y+
Sbjct: 11  QLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLSDYN 69

Query: 199 IKENEVLQII 208
           I++   L ++
Sbjct: 70  IQKESTLHLV 79

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++++ ++ IE LK +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 24 VEMEPSDTIENLKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 77

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + VK     +    +A+   VR  K ++ + +    D   L+F  + L D   L+   I
Sbjct: 19  RVSVKTPQDCHEF-FLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGI 77

Query: 274 VNESIVNL 281
           ++ S V++
Sbjct: 78  LDGSTVHV 85

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
            S ++++  KTP +   F L    +  +   K  I            + + GK++     
Sbjct: 14  SSRIIRVSVKTPQDCHEFFLAE--NSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDI 71

Query: 118 LDVLNINNEDTLQMI 132
           L    I +  T+ ++
Sbjct: 72  LSQRGILDGSTVHVV 86

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 140 EIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
            + V+TP    +  +     V   KK +    +   ++   L   G+ L++   L+   I
Sbjct: 19  RVSVKTPQDCHEFFLAENSNVRRFKKQISK-YLHCNADRLVLIFTGKILRDQDILSQRGI 77

Query: 200 KENEVL 205
            +   +
Sbjct: 78  LDGSTV 83

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          + +   + + K +I          D   L + G+ L +   +   GI + S +H
Sbjct: 33 LAENSNVRRFKKQISKY--LHCNADRLVLIFTGKILRDQDILSQRGILDGSTVH 84

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 32/66 (48%), Positives = 42/66 (63%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 275 NESIVN 280
            ES ++
Sbjct: 63  KESTLH 68

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 1   MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59

Query: 122 NINNEDTLQMI 132
           NI  E TL ++
Sbjct: 60  NIQKESTLHLV 70

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++      P +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDYN 60

Query: 199 IKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK 258
           I++   L ++        ++                 R    +L          +R    
Sbjct: 61  IQKESTLHLVLR-LRGGIIEPSLKALASKYNCDKSVCRKCYARLPPRATNC--RKRKCGH 117

Query: 259 RQQLEDDRNL 268
             QL   + L
Sbjct: 118 TNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVM 62
          V+ ++ I+ +K +I  K       D   L +AG+QLE+G T+ DY I   S +H    + 
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 63 KLYFKTPSNEKTFELKANRSDTI 85
                  + K    K N   ++
Sbjct: 75 GGII--EPSLKALASKYNCDKSV 95

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 70.6 bits (173), Expect = 1e-15
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + VK    +     V +  +V+  K+ + +      D   L+F  + L+D   L  + I 
Sbjct: 35  VTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIH 93

Query: 275 NESIVNL 281
           +   V+L
Sbjct: 94  DGLTVHL 100

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
           +  ++K+  KTP  ++ F +  N   +++  K  I  R      +  + + GK+++   T
Sbjct: 29  EPKIIKVTVKTPKEKEEFAVPEN--SSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDT 86

Query: 118 LDVLNINNEDTLQMI 132
           L    I++  T+ ++
Sbjct: 87  LIQHGIHDGLTVHLV 101

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V +   +++ K  I  +   +   D   L +AG+ L++  T+I +GI +   +H
Sbjct: 48 VPENSSVQQFKEAISKR--FKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVH 99

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 140 EIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
           ++ V+TP    +  V    +V   K+ +   R    ++   L   G+ L++  TL  + I
Sbjct: 34  KVTVKTPKEKEEFAVPENSSVQQFKEAISK-RFKSQTDQLVLIFAGKILKDQDTLIQHGI 92

Query: 200 KENEVL 205
            +   +
Sbjct: 93  HDGLTV 98

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 69.5 bits (170), Expect = 3e-15
 Identities = 31/67 (46%), Positives = 42/67 (62%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IF K L G+ I LEV   DT+ +VK K+  + G  PD QRL++  +QLED R L+ Y I 
Sbjct: 12  IFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQ 71

Query: 275 NESIVNL 281
            ES ++L
Sbjct: 72  RESTLHL 78

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 56  HNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY 115
           H+  G  +++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E  
Sbjct: 4   HHHHGEFQIFAKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG 62

Query: 116 ITLDVLNINNEDTLQMI 132
            TL   NI  E TL ++
Sbjct: 63  RTLSDYNIQRESTLHLV 79

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IF +T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL++ +TL+ Y+
Sbjct: 11  QIFAKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIWAGKQLEDGRTLSDYN 69

Query: 199 IKENEVLQIIRH-----VKHSIFVKLLNGRYIILEV 229
           I+    L ++       +  +   + L  + I L +
Sbjct: 70  IQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSL 105

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V+ ++ I+ +K +I    +E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 24 LEVESSDTIDNVKSKIQD--KEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLH 77

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 68.7 bits (168), Expect = 4e-15
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 1   MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59

Query: 122 NINNEDTLQMI 132
           NI  E TL ++
Sbjct: 60  NIQKESTLHLV 70

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++     IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IKENEVLQII 208
           I++   L ++
Sbjct: 61  IQKESTLHLV 70

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V+ ++ IE +K +I    +E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 15 LEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 68.5 bits (168), Expect = 4e-15
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + VK    +     V    T++ +K+++ +     PD   L+F  + L+D  +LA   +
Sbjct: 24  KVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 82

Query: 274 VNESIVNL 281
            +   V+L
Sbjct: 83  RDGLTVHL 90

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 50  PNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG 109
            +  V      ++K+  KTP +++ F +    + TI+ +K  I  R      +  + + G
Sbjct: 11  SSGLVPRGSPHLIKVTVKTPKDKEDFSVTD--TCTIQQLKEEISQRFKAHPDQLVLIFAG 68

Query: 110 KLIESYITLDVLNINNEDTLQMI 132
           K+++   +L    + +  T+ ++
Sbjct: 69  KILKDPDSLAQCGVRDGLTVHLV 91

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V  T  I++LK  I  +   +   D   L +AG+ L++  ++   G+ +   +H
Sbjct: 38 VTDTCTIQQLKEEISQR--FKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVH 89

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 140 EIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
           ++ V+TP       V    T+  +K+ +   R     +   L   G+ L++  +LA   +
Sbjct: 24  KVTVKTPKDKEDFSVTDTCTIQQLKEEISQ-RFKAHPDQLVLIFAGKILKDPDSLAQCGV 82

Query: 200 KENEVL 205
           ++   +
Sbjct: 83  RDGLTV 88

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 68.3 bits (167), Expect = 4e-15
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +FV+         EV   +TV  +K  +    G AP+ Q ++     LED+  L    + 
Sbjct: 22  LFVR--AQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 79

Query: 275 NESIVNLT 282
             + + + 
Sbjct: 80  ALTTLEVA 87

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 60  GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
           G M+L+ +    ++    +    +T+  IK  +   EGI   +  +   G  +E   TL 
Sbjct: 18  GSMQLFVRA---QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74

Query: 120 VLNINNEDTLQMI 132
              +    TL++ 
Sbjct: 75  QCGVEALTTLEVA 87

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V   E + ++K  + +   E I  +   +  AG  LE+  T+   G+   + + 
Sbjct: 34 VTGQETVAQIKAHVASL--EGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLE 85

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 140 EIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
           ++FV+        EV    TV  +K  V S    I  ED  +   G  L++  TL    +
Sbjct: 21  QLFVRAQE-LHTFEVTGQETVAQIKAHVAS-LEGIAPEDQVVLLAGAPLEDEATLGQCGV 78

Query: 200 KENEVLQII 208
           +    L++ 
Sbjct: 79  EALTTLEVA 87

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 67.6 bits (166), Expect = 5e-15
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 214 SIFVKLLNGRYII-LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYK 272
           S+ + + +G+    + VA   TV   K+ + +  G    +QRL++  + L+DD+ + SY 
Sbjct: 4   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 63

Query: 273 IVNESIVNL 281
           I +   V+L
Sbjct: 64  IQDGHSVHL 72

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 16/71 (22%), Positives = 32/71 (45%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M L     S +  +E+      T+   K  I    GIPV    + Y GK+++   T++  
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 122 NINNEDTLQMI 132
           +I +  ++ ++
Sbjct: 63  HIQDGHSVHLV 73

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V     + + K  I+      I      L Y+G+ L++  TV  Y I +   +H
Sbjct: 20 VAPESTVLQFKEAINKA--NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 71

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 141 IFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIK 200
           I +++     ++ V    TVL  K+ +      IP  +  L   G+ L++ +T+  Y I+
Sbjct: 7   IHIKSGQDKWEVNVAPESTVLQFKEAINK-ANGIPVANQRLIYSGKILKDDQTVESYHIQ 65

Query: 201 ENEVL 205
           +   +
Sbjct: 66  DGHSV 70

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 67.8 bits (166), Expect = 5e-15
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 215 IFVKLLNGRYII--LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYK 272
           I V+ ++GR       +++   V +++ K+       P  QRL ++ +Q+ED   L  Y+
Sbjct: 5   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 64

Query: 273 IVNESIVNL 281
           +     + L
Sbjct: 65  VRLNDTIQL 73

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 60  GVMKLYFKTPSNEKTFELKA-NRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
           G M +  +T    +T  + + +R   +E ++  I+    +      ++Y GK +E   TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 119 DVLNINNEDTLQMI 132
               +   DT+Q++
Sbjct: 61  FDYEVRLNDTIQLL 74

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          + +  K+E+L+ +I       +   L  LFY G+Q+E+G T+ DY +  N  I 
Sbjct: 21 LSRLTKVEELRRKIQEL--FHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQ 72

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 141 IFVQTPT---STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYY 197
           I V+T     +     + R   V ++++ ++     +      LF  G+Q+++  TL  Y
Sbjct: 5   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE-LFHVEPGLQRLFYRGKQMEDGHTLFDY 63

Query: 198 DIKENEVLQII 208
           +++ N+ +Q++
Sbjct: 64  EVRLNDTIQLL 74

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 215 IFVKLLNGR--YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYK 272
           I V+ ++G     I +V++  T+ +++++++      P+ QRL ++ +QLE+   L  Y 
Sbjct: 10  IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYD 69

Query: 273 IVNESIVNL 281
           +    I+ L
Sbjct: 70  VGLNDIIQL 78

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 62  MKLYFKTPSNEKTFELKA-NRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDV 120
           M +  +T    KT  ++  +R  TIE ++  +     +      ++Y GK +E+  TL  
Sbjct: 8   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 67

Query: 121 LNINNEDTLQMI 132
            ++   D +Q++
Sbjct: 68  YDVGLNDIIQLL 79

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V +   IE+L+ R+ A    ++  +   LFY G+QLENG T+ DY +  N +I 
Sbjct: 26 VSRKATIEELRERVWAL--FDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQ 77

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 140 EIFVQTPTS--TVKLE-VRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAY 196
            I V+T     T  +E V R  T+ ++++ V +    +  E   LF  G+QL+N  TL  
Sbjct: 9   WIQVRTIDGSKTCTIEDVSRKATIEELRERVWA-LFDVRPECQRLFYRGKQLENGYTLFD 67

Query: 197 YDIKENEVLQ 206
           YD+  N+++Q
Sbjct: 68  YDVGLNDIIQ 77

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 69.6 bits (170), Expect = 1e-14
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTI+N+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 1   MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59

Query: 122 NINNEDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCEL 181
           NI  E TL ++   +      ++                    +  E+       +  +L
Sbjct: 60  NIQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDL 119

Query: 182 FRGGEQLQN 190
             G + L +
Sbjct: 120 TFGAKYLLD 128

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---- 56
           ++V+ ++ I+ +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H    
Sbjct: 15  LEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 57  -NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY 115
               G   + F    +  +  +       +E+ +  I++    PV   D+ +G K +   
Sbjct: 73  LRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPV---DLTFGAKYLLDI 129

Query: 116 IT------LDVLNINNEDTLQM 131
           I          + +++E     
Sbjct: 130 IKGSSLSDRVGIRLSSEAPALF 151

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 53.8 bits (129), Expect = 4e-09
 Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 16/155 (10%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQ-DKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IKENEVLQIIRHV-----KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQ 253
           I++   L ++  +     +   FV   +     + +  F  +   +  +  E+ Q  D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 254 RLVFKRQQLED---DRNLA---SYKIVNESIVNLT 282
            L F  + L D     +L+     ++ +E+     
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQ 152

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQA---PDSQRLVFKRQQLEDDRNLASY 271
           + +K L  +   +++   +TV+ +K+K+  E G+       Q+L++  + L DD  L  Y
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62

Query: 272 KIVNESIVNL 281
           KI  ++ V +
Sbjct: 63  KIDEKNFVVV 72

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG---IPVHEYDIYYGGKLIESYITL 118
           M++  KT    +TF++  +  +T++ +K  IE  +G    PV    + Y GK++     L
Sbjct: 1   MQVTLKTLQQ-QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTAL 59

Query: 119 DVLNINNEDTLQ-MISVPK 136
               I+ ++ +  M++ PK
Sbjct: 60  KEYKIDEKNFVVVMVTKPK 78

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMR--ICIPSEDCELFRGGEQLQNLKTLAY 196
           ++ ++T    T K+++    TV  +K+ +ES +     P    +L   G+ L +   L  
Sbjct: 2   QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKE 61

Query: 197 YDIKENEVL 205
           Y I E   +
Sbjct: 62  YKIDEKNFV 70

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 3  VKKTEKIEKLKLRIHAKV-EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          +   E ++ LK +I ++  ++       +L YAG+ L +   + +Y I   + + 
Sbjct: 17 IDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVV 71

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 69.6 bits (170), Expect = 1e-14
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 73  KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
                K+   D   N +  +  + G    E DI Y      S   L      + D L   
Sbjct: 45  DVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRIL-----YSSDWLIYK 99

Query: 133 SVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNL 191
           +      +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ 
Sbjct: 100 TTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDG 158

Query: 192 KTLAYYDIKENEVLQIIRHVK--HSIFVKL 219
           +TL+ Y+I++   L ++  ++     F K+
Sbjct: 159 RTLSDYNIQKESTLHLVLRLRGGGQTFTKI 188

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 159 TVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVK 218
              + +  +   +      + ++        + + L   D     + +   H    IFVK
Sbjct: 56  IFSNREGKLPG-KSGRTWREADINYTSGFRNSDRILYSSDWL---IYKTTDHYGGQIFVK 111

Query: 219 LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESI 278
            L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I  ES 
Sbjct: 112 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 171

Query: 279 VNL 281
           ++L
Sbjct: 172 LHL 174

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 53.5 bits (128), Expect = 8e-09
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 2   KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGV 61
           K    +     + ++  K          ++ Y      +   +             D   
Sbjct: 50  KSIGGDIFSNREGKLPGK--SGRTWREADINYTSGFRNSDRILYSS--DWLIYKTTDHYG 105

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
            +++ KT + + T  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 106 GQIFVKTLTGK-TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164

Query: 122 NINNEDTLQMI 132
           NI  E TL ++
Sbjct: 165 NIQKESTLHLV 175

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 188 LQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG 247
           LQ    L    I ++E   +           +  G+ I       D   + + KL  + G
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGG-----DIFSNREGKLPGKSG 69

Query: 248 QAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +      + +       DR L S   +
Sbjct: 70  RTWREADINYTSGFRNSDRILYSSDWL 96

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I V+   GR    EV    TV  +K ++    G   D   L F+ + LED   L  Y + 
Sbjct: 7   ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK 66

Query: 275 NESIVNL 281
             S V +
Sbjct: 67  PLSTVFM 73

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           + +  +     ++   +   + T+ ++K  +   EG+    + + + GK +E  + L   
Sbjct: 5   LSILVRNNKG-RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY 63

Query: 122 NINNEDTLQMI 132
            +    T+ M 
Sbjct: 64  GLKPLSTVFMN 74

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            I V+     +   EVR   TV  +K+ V      +  +   L   G+ L++   L  Y 
Sbjct: 6   SILVRNNKGRSSTYEVRLTQTVAHLKQQVSG-LEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 199 IKENEVLQII 208
           +K    + + 
Sbjct: 65  LKPLSTVFMN 74

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
           +V+ T+ +  LK ++     E + +DL  L + G+ LE+ L + +YG+   S + 
Sbjct: 19 YEVRLTQTVAHLKQQVSGL--EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 72

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 69.4 bits (169), Expect = 1e-14
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + VK L G   I  + +  +V D+K ++ +++G   D   LV       +        + 
Sbjct: 3   VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTE-----LVT 57

Query: 275 NESIVNLT 282
           ++    L+
Sbjct: 58  DDVTYYLS 65

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M++  KT    +T      +  ++ ++K  I    G  +    +   G +       +  
Sbjct: 1   MQVQVKTLEG-ETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-----NTE 54

Query: 122 NINNEDTLQMI-SVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESM 170
            + ++ T  +   +    ++   ++ T+  K + R  HT L      +  
Sbjct: 55  LVTDDVTYYLSLKLLGGKKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLE 104

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 141 IFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
           + V+T    T    + +  +VLD+K  +    +    +   L   G    N + +     
Sbjct: 3   VQVKTLEGETKIYTLEQGTSVLDLKSQISQ-DMGFEIDMMTLVNNGFIAPNTELVTDDVT 61

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 7/54 (12%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          +++   +  LK +I          D+  L   G    N   V D         +
Sbjct: 17 LEQGTSVLDLKSQISQD--MGFEIDMMTLVNNGFIAPNTELVTDD-----VTYY 63

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 21/68 (30%), Positives = 29/68 (42%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           SI V+   GR    EV    TV  +K ++    G   D   L F+ + LED   L  Y +
Sbjct: 6   SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGL 65

Query: 274 VNESIVNL 281
              S V +
Sbjct: 66  KPLSTVFM 73

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           + +  +     ++   +   + T+ ++K  +   EG+    + + + GK +E  + L   
Sbjct: 5   LSILVRNNKG-RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY 63

Query: 122 NINNEDTLQMI 132
            +    T+ M 
Sbjct: 64  GLKPLSTVFMN 74

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            I V+     +   EVR   TV  +K+ V      +  +   L   G+ L++   L  Y 
Sbjct: 6   SILVRNNKGRSSTYEVRLTQTVAHLKQQVSG-LEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 199 IKENEVLQII 208
           +K    + + 
Sbjct: 65  LKPLSTVFMN 74

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
           +V+ T+ +  LK ++     E + +DL  L + G+ LE+ L + +YG+   S + 
Sbjct: 19 YEVRLTQTVAHLKQQVSGL--EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 72

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 15/66 (22%), Positives = 33/66 (50%)

Query: 216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVN 275
               LNG+ ++  +   D V  +K K+    G     Q+L ++   ++D  +LA Y + +
Sbjct: 39  TEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMAS 98

Query: 276 ESIVNL 281
            ++++L
Sbjct: 99  GAVIHL 104

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 11/60 (18%), Positives = 23/60 (38%)

Query: 73  KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
           +        +D +  IK  I    G+P  +  + Y G  I+   +L   N+ +   + + 
Sbjct: 46  QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 3   VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
           +  T+++  +K++IH      +     +L Y G  +++  ++  Y + + +VIH
Sbjct: 52  LPLTDQVSVIKVKIHEA--TGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 131 MISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQN 190
            + VP    +   +     +   +     V  +K  +      +P+   +L   G  +++
Sbjct: 29  KVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHE-ATGMPAGKQKLQYEGIFIKD 87

Query: 191 LKTLAYYDIKENEVLQ 206
             +LAYY++    V+ 
Sbjct: 88  SNSLAYYNMASGAVIH 103

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQA---PDSQRLVFKRQQLEDDRNLASY 271
           I +K L  +   + +   +TV+ +K+K+  E G+       Q+L++  + L DD  +  Y
Sbjct: 8   ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67

Query: 272 KIVNESIVNL 281
           +I  ++ V +
Sbjct: 68  RIDEKNFVVV 77

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 61  VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG---IPVHEYDIYYGGKLIESYIT 117
            + +  KT    +TF+++    +T++ +K  IE  +G    PV    + Y GK++   + 
Sbjct: 5   AVTITLKTLQQ-QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 63

Query: 118 LDVLNINNEDTLQ-MISVPK 136
           +    I+ ++ +  M++  K
Sbjct: 64  IRDYRIDEKNFVVVMVTKTK 83

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMR--ICIPSEDCELFRGGEQLQNLKTLAY 196
            I ++T    T K+ +    TV  +K+ +E+ +     P    +L   G+ L +   +  
Sbjct: 7   TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRD 66

Query: 197 YDIKENEVL 205
           Y I E   +
Sbjct: 67  YRIDEKNFV 75

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3  VKKTEKIEKLKLRIHAKV-EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++  E ++ LK +I A+   +       +L YAG+ L + + + DY I   + + 
Sbjct: 22 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVV 76

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 65.9 bits (161), Expect = 5e-14
 Identities = 12/68 (17%), Positives = 30/68 (44%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           S+  K      + L++   +T+ + K KL + I       +L++  + L+D + ++   +
Sbjct: 3   SLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGL 62

Query: 274 VNESIVNL 281
            +   V  
Sbjct: 63  KDGDQVVF 70

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 61  VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDV 120
           ++ L FK    ++   L    S+TI   K  +         +  + Y GK+++   T+  
Sbjct: 1   MVSLTFKN-FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSE 59

Query: 121 LNINNEDTLQ-MISVPK 136
             + + D +  M+S  K
Sbjct: 60  CGLKDGDQVVFMVSQKK 76

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++ +  I + K ++         E   +L Y+G+ L++  TV + G+ +   + 
Sbjct: 18 LEPSNTILETKTKLAQS--ISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVV 69

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 141 IFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
           +  +      V L++  ++T+L+ K  +            +L   G+ LQ+ KT++   +
Sbjct: 4   LTFKNFKKEKVPLDLEPSNTILETKTKLAQSI-SCEESQIKLIYSGKVLQDSKTVSECGL 62

Query: 200 KENEVL 205
           K+ + +
Sbjct: 63  KDGDQV 68

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 68.7 bits (167), Expect = 2e-13
 Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 13/199 (6%)

Query: 96  EGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL-------------QMISVPKELQEIF 142
           +G      ++ + G  + + I L  ++   +  +               I   K+   I 
Sbjct: 104 DGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK 163

Query: 143 VQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKEN 202
           V         +          +         +  ++  L       ++      + +   
Sbjct: 164 VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLE 223

Query: 203 EVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQL 262
            V          IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QL
Sbjct: 224 FVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 283

Query: 263 EDDRNLASYKIVNESIVNL 281
           ED R L+ Y I  ES ++L
Sbjct: 284 EDGRTLSDYNIQKESTLHL 302

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 35/208 (16%), Positives = 82/208 (39%), Gaps = 15/208 (7%)

Query: 15  RIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVI-------HNDSGVMKLYFK 67
           R     ++   +   E+ + G  L N + +       +  I       + +S  + +   
Sbjct: 97  RTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMAD 156

Query: 68  TPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY-GGKLIESYITLDVLNINNE 126
              N      K   +    +++     ++  P+ +  +       + +   L        
Sbjct: 157 KQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKR 216

Query: 127 DTLQMI-----SVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCE 180
           D + ++     +      +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   
Sbjct: 217 DHMVLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ-DKEGIPPDQQR 275

Query: 181 LFRGGEQLQNLKTLAYYDIKENEVLQII 208
           L   G+QL++ +TL+ Y+I++   L ++
Sbjct: 276 LIFAGKQLEDGRTLSDYNIQKESTLHLV 303

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1   MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
           ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 248 LEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 301

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQA---PDSQRLVFKRQQLEDDRNLASY 271
           I +K L  +   + +   +TV+ +K+K+  E G+       Q+L++  + L DD  +  Y
Sbjct: 10  ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69

Query: 272 KIVNESIVNL 281
           +I  ++ V +
Sbjct: 70  RIDEKNFVVV 79

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG---IPVHEYDIYYGGKLIES 114
            S  + +  KT    +TF+++    +T++ +K  IE  +G    PV    + Y GK++  
Sbjct: 4   GSSAVTITLKTLQQ-QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD 62

Query: 115 YITLDVLNINNEDTLQMISVPKELQEIFVQTPTST 149
            + +    I+ ++ + ++    +  +     P ++
Sbjct: 63  DVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEAS 97

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 141 IFVQTPT-STVKLEVRRAHTVLDVKKMVESMRIC--IPSEDCELFRGGEQLQNLKTLAYY 197
           I ++T    T K+ +    TV  +K+ +E+ +     P    +L   G+ L +   +  Y
Sbjct: 10  ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69

Query: 198 DIKENEVL 205
            I E   +
Sbjct: 70  RIDEKNFV 77

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3  VKKTEKIEKLKLRIHAKV-EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++  E ++ LK +I A+   +       +L YAG+ L + + + DY I   + + 
Sbjct: 24 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVV 78

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + VK   G+ I L V+   TV+D+K +L       P  Q+L+FK + L +   L    +
Sbjct: 14  KLTVKF-GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDV 72

Query: 274 VNESIVNL 281
            + + + L
Sbjct: 73  GSGAKLML 80

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 56  HNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY 115
           H+    +KL  K     K+  L  +   T++++K  ++    +      + + GK++   
Sbjct: 7   HHSHSTIKLTVKFGG--KSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVET 64

Query: 116 ITLDVLNINNEDTLQMI 132
            TL   ++ +   L ++
Sbjct: 65  STLKQSDVGSGAKLMLM 81

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 59.8 bits (145), Expect = 8e-12
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 214 SIFVK-LLNGRYIILEVAKF-DTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASY 271
            +      +G+++ + V    + V  +K+K+  EI    + Q+L  K   L+D+ +LA Y
Sbjct: 31  RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHY 90

Query: 272 KIVNESIVNLT 282
            +    I+ L+
Sbjct: 91  NVGAGEILTLS 101

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 11/90 (12%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 46  DYGIPNNSVI--HNDSGVMKLYFKTPSNEKTFELKAN-RSDTIENIKFIIEVREGIPVHE 102
              +P +  +  H     +++     ++ +  E+     S+ + ++K  I     IP ++
Sbjct: 12  SALVPEDQFLAQHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANK 71

Query: 103 YDIYYGGKLIESYITLDVLNINNEDTLQMI 132
             +      ++  ++L   N+   + L + 
Sbjct: 72  QKLSGKAGFLKDNMSLAHYNVGAGEILTLS 101

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 6  TEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          +E +  LK +I  +   +I  +  +L      L++ +++  Y +    ++ 
Sbjct: 51 SENVGSLKEKIAGE--IQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILT 99

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 59.3 bits (144), Expect = 8e-12
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKI 273
           + VK    +   +EV + +TV  +KDK+           +L +   +L DD RNL  Y I
Sbjct: 18  VTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGI 76

Query: 274 VNESIVNL 281
              S + +
Sbjct: 77  TEFSEIVV 84

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK-LIESYITLDV 120
           + +  K PS  K F ++ +R++T+ ++K  I + E  P+    +YY G  L + Y  L+ 
Sbjct: 16  IHVTVKFPS--KQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNE 73

Query: 121 LNINNEDTLQ-MISVPKELQE 140
             I     +   +      ++
Sbjct: 74  YGITEFSEIVVFLKSINRAKD 94

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 140 EIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQ-NLKTLAYYD 198
            + V+ P+    +EV R  TV  +K  +  +    P +  +L+  G +L  + + L  Y 
Sbjct: 17  HVTVKFPSKQFTVEVDRTETVSSLKDKIHIVE-NTPIKRMQLYYSGIELADDYRNLNEYG 75

Query: 199 IKENEVLQI 207
           I E   + +
Sbjct: 76  ITEFSEIVV 84

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 59  SGVMKLYFKTPS---NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK-LIES 114
           S  M +          E TF L+ N    + N + + E+  G+P  E  I Y  + L + 
Sbjct: 5   SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDD 64

Query: 115 YITLDVLNINNEDTLQMISVPKELQEIFVQTPT 147
           + +L    + + D + ++           +TP+
Sbjct: 65  HCSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPS 97

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYK 272
               + L      L+V     + + +     E G   +  ++V+  Q L DD  +L SY 
Sbjct: 13  YCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYG 72

Query: 273 IVNESIVNL 281
           + +  +V L
Sbjct: 73  LKDGDMVVL 81

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 140 EIFVQTPT-----STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNL-KT 193
            I V          T  L+V     + + + + E +   +P+E+ ++    + L +   +
Sbjct: 9   LITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCE-LESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 194 LAYYDIKENEVLQIIR 209
           L  Y +K+ +++ +++
Sbjct: 68  LGSYGLKDGDMVVLLQ 83

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV-FKRQQLEDDRNLASYKI 273
            F      R + + +    TV ++K  L  E+        L  +K   +ED   L S  +
Sbjct: 11  DFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHL 70

Query: 274 VNESIVNL 281
              + + +
Sbjct: 71  PKNNSLYV 78

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 218 KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
             ++   I L V    TV  +KD +F + G  P  Q+ V  ++   D   L S+ +
Sbjct: 32  AQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGV 87

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           S+ VK    ++  +E+   +     K +LF   G  P  Q+++ K   L+DD +  + K+
Sbjct: 9   SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKM 67

Query: 274 VNESIVNL 281
            N   V +
Sbjct: 68  KNGMTVLM 75

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 45.8 bits (108), Expect = 7e-07
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYK 272
           ++ +K LN    +      DTV  +K K F          +L+++ + L+D  R L+S  
Sbjct: 9   NVRLKFLNDTEELAVARPEDTVGTLKSKYFPG---QESQMKLIYQGRLLQDPARTLSSLN 65

Query: 273 IVNESIVNL 281
           I N  +++ 
Sbjct: 66  ITNNCVIHC 74

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 210 HVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLA 269
            +         N     ++V    T  ++K K+    G  P  Q++++K   + +D+ L 
Sbjct: 21  KIIW-------NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK-GLVPEDKTLR 72

Query: 270 SYKIVNESIVNL 281
             K+ + + + +
Sbjct: 73  EIKVTSGAKIMV 84

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G   +  K   N+   ++K     T   +K  I    G+P     + Y G + E   T
Sbjct: 12  GVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KT 70

Query: 118 LDVLNINNEDTLQMISVPKELQE 140
           L  + + +   + ++        
Sbjct: 71  LREIKVTSGAKIMVVGSTISGPS 93

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 203 EVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQL 262
           +V  +IR  K +IF           +  +  TV ++K  +   + + P+ QRL    Q L
Sbjct: 2   DVFLMIRRHKTTIF----------TDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLL 51

Query: 263 EDDRNLASYKIVNES 277
           +D + L      +++
Sbjct: 52  DDGKTLGECGFTSQT 66

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 140 EIFVQTPT--STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYY 197
           ++F+      +T+  + + + TV ++K++VE + +  P E+  L++  + L + KTL   
Sbjct: 2   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 198 DI 199
             
Sbjct: 61  GF 62

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M ++     ++ T    A  S T+  +K I+E     P  E  +Y   +L++   TL   
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 122 NINNEDT 128
              ++  
Sbjct: 61  GFTSQTA 67

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 234 TVRDVKDKLFREIGQ---APDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
           ++  +K  +  ++ +    P+   L++  ++L+DD+ L  Y I   S V++
Sbjct: 46  SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHV 96

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 8  KIEKLKLRIHAKVEEEILE-DLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
           I  LK  I  K++E + + +L +L Y G++L++  T+  YGI   S +H
Sbjct: 46 SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVH 95

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 214 SIFVKLLNGRY--IILEVAKFDTVRDVKDKLFREI--GQAPDSQRLVFKRQQLEDDRNLA 269
           ++ VK  N R+  + L   +  +V  +K  L R       P+ QRL++  + L D + L 
Sbjct: 9   TLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLR 68

Query: 270 SYKIVNES 277
                 E 
Sbjct: 69  DLLPKQEK 76

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 73  KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQM 131
           K   +K N  DTI ++K +I  + G   ++  +     + + +++L    I++   L++
Sbjct: 39  KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLEL 97

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 33/59 (55%)

Query: 73  KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQM 131
           K   +K    D++ + K ++ ++ G   ++  +  GG +++ +I+L+   ++++  L++
Sbjct: 32  KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLEL 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 43/307 (14%), Positives = 91/307 (29%), Gaps = 97/307 (31%)

Query: 58  DSGVMKLYFK--TPSNEKTFELKANRSDTIENIKFIIEVRE-----GIPVHEYDIYY--- 107
           ++G  +  +K      E  F    +  D  +  K I+   E                   
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 108 -----GGKLIESYITLDVLNINNEDTLQMISV----PKELQEIFVQT-------PTSTVK 151
                  ++++ ++  +VL IN +  +  I      P  +  ++++             K
Sbjct: 70  TLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 152 LEVRRAHTVLDVKKMVESMRI---------------CIPSEDC------ELFRGG----- 185
             V R    L +++ +  +R                 +  + C                 
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 186 -----------EQLQNLKTLAYYDIKEN-----EVLQIIRHVKHSI---FVKLLNGR--- 223
                      E LQ L     Y I  N     +    I+   HSI     +LL  +   
Sbjct: 189 LKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 224 --YIILEVAKFDTVRDVKDKLFREIGQAPD--SQRLVFKR-QQLEDDRNLASYKIV--NE 276
              ++L         +V++    +   A +   + L+  R +Q+ D  + A+   +  + 
Sbjct: 245 NCLLVL--------LNVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 277 SIVNLTD 283
             + LT 
Sbjct: 294 HSMTLTP 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 56/341 (16%), Positives = 105/341 (30%), Gaps = 94/341 (27%)

Query: 7   EKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---------- 56
           +    +KLRIH      I  +L  L    +  EN L V+   + N    +          
Sbjct: 218 DHSSNIKLRIH-----SIQAELRRLL-KSKPYENCLLVLL-NVQNAKAWNAFNLSCKILL 270

Query: 57  --NDSGVMKLYFKTPSNEKTFELKANRS----DTIENI--KFI--------IEVREGIPV 100
                 V    F + +      L  +      D ++++  K++         EV    P 
Sbjct: 271 TTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 101 HEYDIYYGGKLIESYITLD-VLNINNEDTLQMISV------PKELQEIFVQTPTSTVKLE 153
               I     + +   T D   ++N +    +I        P E +++F +       L 
Sbjct: 329 RLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-------LS 379

Query: 154 VRRAHTVLDVKKMVESMRICI-----PSEDCELFRGGEQLQNLKTLAYYDIKENEV---- 204
           V            + ++ + +        D  +     +L    +L     KE+ +    
Sbjct: 380 VFPP----SAH--IPTILLSLIWFDVIKSDVMVVV--NKLHK-YSLVEKQPKESTISIPS 430

Query: 205 LQIIRHVK-------HSIFVKLLNGRYIILEVAKFDTVRDVKDK-LFREIG----QAPDS 252
           + +   VK       H     +++   I       D +    D+  +  IG         
Sbjct: 431 IYLELKVKLENEYALHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 253 QRLVFKRQQLEDDRNLASYKIVNE--------SIVN-LTDL 284
           +R+   R    D R L   KI ++        SI+N L  L
Sbjct: 488 ERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQL 527

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 229 VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ-------QLEDDRNLASYKIVNESIVNL 281
                ++ D+K KL   +G   DS R+              +  ++L    + +   ++ 
Sbjct: 24  YPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83

Query: 282 TDL 284
            D+
Sbjct: 84  VDV 86

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ--------APDSQRLVFKRQQLEDD 265
           ++ + L++G+      +  D+  D+   ++             +P+  RL+++ + L  +
Sbjct: 19  NLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN 78

Query: 266 RNLASYKIVNESIVNL 281
             L + K+       +
Sbjct: 79  VTLGALKLPFGKTTVM 94

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLAS 270
            I VK     Y +  +++ DTV D+K  L    G  P+ Q+L+    K +  E+D  L +
Sbjct: 9   PIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGA 68

Query: 271 YKIVNESIVNL 281
            K+   + + +
Sbjct: 69  LKLKPNTKIMM 79

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFR--------EIGQAPDSQRLVFKRQQLEDD 265
           ++ + L++G+      +  D+  D+   ++         E   +P+  RL+++ + L  +
Sbjct: 18  NLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN 77

Query: 266 RNLASYKI 273
             L + K+
Sbjct: 78  VTLGALKL 85

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 36.8 bits (85), Expect = 9e-04
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 211 VKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ-------LE 263
           V   I    L         +   +V  VK+KL+++ G + +S  L              +
Sbjct: 15  VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSD 74

Query: 264 DDRNLASYKIVNESIVNLTDL 284
           D R L  +   +   +++ DL
Sbjct: 75  DSRPLGFFSPFDGFRLHIIDL 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.85
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.83
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.83
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.82
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.8
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.8
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.79
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.79
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.79
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.78
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.78
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.78
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.77
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.77
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.77
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.77
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.77
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.77
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.77
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.77
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.77
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.77
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.76
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.76
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.76
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.76
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.76
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.76
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.76
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.76
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.75
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.75
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.75
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.75
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.74
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.74
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.74
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.74
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.74
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.74
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.74
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.74
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.74
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.74
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.73
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.73
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.73
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.73
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.73
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.73
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.73
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.72
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.72
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.72
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.72
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.72
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.72
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.71
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.71
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.71
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.71
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.71
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.71
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.71
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.71
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.71
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.55
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.71
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.71
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.71
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.71
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.71
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.71
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.7
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.7
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.7
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.7
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.7
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.7
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.7
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.69
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.69
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.69
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.69
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.69
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.69
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.69
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.69
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.68
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.68
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.68
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.68
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.67
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.5
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.67
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.67
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.67
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.67
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.66
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.66
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.66
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.66
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.65
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.65
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.65
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.65
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.65
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.65
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.65
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.65
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.64
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.64
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.64
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.64
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.63
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.63
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.63
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.62
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.62
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.62
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.62
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.62
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.6
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.6
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.6
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.59
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.59
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.59
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.59
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.59
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.59
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.59
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.59
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.58
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.58
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.57
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.57
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.57
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.57
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.57
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.55
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.55
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.54
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.54
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.53
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.51
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.51
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.5
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.5
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.47
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.47
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.47
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.47
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.46
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.43
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.41
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.41
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.41
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.4
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.39
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.38
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.36
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.36
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.33
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.31
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.3
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.29
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.28
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.28
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.27
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.26
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.24
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.23
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.23
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.22
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.18
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.16
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.12
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.01
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.88
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.83
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.82
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.68
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.6
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.56
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.54
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.46
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.41
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.39
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.34
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.32
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.26
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.21
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.18
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.18
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.17
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.08
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	98.05
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.04
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.99
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.94
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.89
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.86
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.84
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.79
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.72
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.6
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	97.56
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.56
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.51
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.46
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.42
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.25
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.16
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.02
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	97.0
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.88
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	96.44
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	96.35
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	96.33
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	96.12
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	96.07
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.9
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	95.83
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	95.7
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	95.68
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.93
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	94.8
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	94.52
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.49
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	94.47
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	94.32
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	93.95
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	93.87
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	93.54
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	93.02
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	92.64
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	92.59
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	92.09
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	92.02
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	91.93
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	90.74
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	90.3
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	89.77
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	89.13
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	88.26
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	86.77
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	85.62
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	85.4
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	85.15
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	84.62
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	84.59
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	84.34
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	84.31
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	83.74
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	83.61
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	80.79

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=7.4e-36  Score=243.27  Aligned_cols=149  Identities=17%  Similarity=0.212  Sum_probs=144.2

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE-E-CCEEeeccccccccccCCCCeEEEEee-ccc
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY-Y-GGKLIESYITLDVLNINNEDTLQMISV-PKE  137 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~-~g~~L~D~~tL~~~~I~~~s~i~l~~~-~~~  137 (286)
                      .|+|+||+++ |+++++++++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++++++++ +++
T Consensus         2 ~m~i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~   80 (159)
T 3rt3_B            2 GWDLTVKMLA-GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE   80 (159)
T ss_dssp             -CEEEEEETT-SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred             ceEEEEEECC-CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC
Confidence            3899999999 99999999999999999999999999999999999 9 799999999999999999999999999 589


Q ss_pred             ceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeee
Q 023198          138 LQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHV  211 (286)
Q Consensus       138 ~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~  211 (286)
                      +|+|+|++.+| +++++|++++||.+||++|+. ++|+|+++|+|+|+|+.|+|+++|++|+|++|++|++.++.
T Consensus        81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~-~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl  154 (159)
T 3rt3_B           81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSG-LEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL  154 (159)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-HHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence            99999999999 999999999999999999999 99999999999999999999999999999999999998764

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=244.07  Aligned_cols=151  Identities=34%  Similarity=0.514  Sum_probs=145.5

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .+.|+|+|++.+ |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus        18 ~~~m~i~Vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg   96 (172)
T 3u30_A           18 GSHMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   96 (172)
T ss_dssp             -CCEEEEEEETT-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CCcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence            468999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeee
Q 023198          139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHV  211 (286)
Q Consensus       139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~  211 (286)
                      +.++|++.+| ++++++++++||.+||++|+. ++|+|+++|+|+|+|+.|+|+++|++|+|++|++|++.++.
T Consensus        97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~-~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rl  169 (172)
T 3u30_A           97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  169 (172)
T ss_dssp             EEEEEEESSCCEEEEEECTTCBHHHHHHHHHH-HHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC--
T ss_pred             ccceeecccCcceeEEecCCCCHHHHHHHHHH-HhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEec
Confidence            9999999999 999999999999999999999 99999999999999999999999999999999999998764

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=1.3e-34  Score=235.91  Aligned_cols=146  Identities=21%  Similarity=0.219  Sum_probs=140.4

Q ss_pred             ceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEE-e-CCeeecCCccccccccCCCceEEEEeee-e-
Q 023198          138 LQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELF-R-GGEQLQNLKTLAYYDIKENEVLQIIRHV-K-  212 (286)
Q Consensus       138 ~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~-~-~g~~L~d~~tL~~y~i~~~~~i~l~~~~-~-  212 (286)
                      +|+|+|++.+| +++++|++++||.+||++|+. ..|+|+++|+|+ | +|+.|+|+.+|++|+|++|+++++..+. . 
T Consensus         2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~-~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~   80 (159)
T 3rt3_B            2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQ-KIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE   80 (159)
T ss_dssp             -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHH-HHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred             ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHH-HhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC
Confidence            37899999999 999999999999999999999 999999999999 9 7999999999999999999999999883 3 


Q ss_pred             -eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 -HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 -~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                       |+++||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++||++.|
T Consensus        81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r  153 (159)
T 3rt3_B           81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR  153 (159)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence             999999999999999999999999999999999999999999999999999999999999999999999865

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=5.9e-34  Score=234.97  Aligned_cols=148  Identities=38%  Similarity=0.583  Sum_probs=141.8

Q ss_pred             ccceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeeee--
Q 023198          136 KELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVK--  212 (286)
Q Consensus       136 ~~~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~--  212 (286)
                      ...|+|+|++.+| ++.++|++++||.+||++|+. .+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++.++..  
T Consensus        18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~-~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg   96 (172)
T 3u30_A           18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   96 (172)
T ss_dssp             -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHH-HHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHH-HHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence            3469999999999 999999999999999999999 999999999999999999999999999999999999998755  


Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.++|++.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|.+|+|++|++|||+.|
T Consensus        97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r  168 (172)
T 3u30_A           97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  168 (172)
T ss_dssp             EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred             ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=3e-33  Score=225.77  Aligned_cols=148  Identities=34%  Similarity=0.527  Sum_probs=144.4

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccceeE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEI  141 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I  141 (286)
                      |+|+|++.+ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+++++|.|
T Consensus         1 M~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i   79 (152)
T 3b08_A            1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI   79 (152)
T ss_dssp             CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred             CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccce
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeee
Q 023198          142 FVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHV  211 (286)
Q Consensus       142 ~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~  211 (286)
                      +|++.+| ++.+++++++||.+||++|+. +.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.++.
T Consensus        80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~-~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  149 (152)
T 3b08_A           80 FVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  149 (152)
T ss_dssp             EEEESSSCEEEEEECTTCBHHHHHHHHHH-HHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             eeeecCCCEEEEEeCCCCcHHHHHHHHHH-HhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence            9999999 999999999999999999999 99999999999999999999999999999999999998764

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=3.8e-32  Score=219.29  Aligned_cols=145  Identities=39%  Similarity=0.602  Sum_probs=140.5

Q ss_pred             eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeeee--eEE
Q 023198          139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVK--HSI  215 (286)
Q Consensus       139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~--~~i  215 (286)
                      |+|+|++.+| ++.+++++++||.+||++|+. ..|+|+++|+|+|+|+.|+|+.+|++|+|.+|+++++..+..  +.+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~-~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i   79 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI   79 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHH-HHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHH-HHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccce
Confidence            6899999999 999999999999999999999 999999999999999999999999999999999999998764  899


Q ss_pred             EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +|++++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.|
T Consensus        80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  148 (152)
T 3b08_A           80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  148 (152)
T ss_dssp             EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999876

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.85  E-value=4e-22  Score=152.82  Aligned_cols=103  Identities=27%  Similarity=0.357  Sum_probs=97.9

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .+.++|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus         7 ~~~~~i~vk~l~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG   85 (114)
T 2kdi_A            7 HGEFQIFAKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   85 (114)
T ss_dssp             CCCCEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred             CCcEEEEEEeCC-CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            578999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEee---cCCC-eEEEecCCCccHHh
Q 023198          139 QEIFVQ---TPTS-TVKLEVRRAHTVLD  162 (286)
Q Consensus       139 ~~I~V~---~~~g-~~~l~v~~~~tV~~  162 (286)
                      +.++++   +.+| +++++|++++||.+
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           86 SMGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             ceeeccccccccCceEEEEeccccccCC
Confidence            999998   4568 99999999999864

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.83  E-value=2.3e-20  Score=135.61  Aligned_cols=74  Identities=15%  Similarity=0.333  Sum_probs=70.5

Q ss_pred             eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           58 DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        58 ~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      .++.|+|+||+++ |++++++++|+|||++||++|++++|+|+++|||+|+|++|+|+.||++|+|++|++++|.
T Consensus        18 ~~~mIqI~Vk~~~-Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           18 GSHMIEVVVNDRL-GKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             --CEEEEEEECTT-SCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             CCceEEEEEECCC-CCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            3568999999999 9999999999999999999999999999999999999999999999999999999999986

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.83  E-value=1.7e-20  Score=136.32  Aligned_cols=72  Identities=22%  Similarity=0.264  Sum_probs=69.7

Q ss_pred             eeeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          211 VKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       211 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +.|+|+||+++|+++.++++|++||++||++|++++|+|+++|||+|+|+.|+|+.||++|+|++|++|+|-
T Consensus        20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            449999999999999999999999999999999999999999999999999999999999999999999984

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.82  E-value=5.8e-20  Score=131.53  Aligned_cols=78  Identities=13%  Similarity=0.193  Sum_probs=74.6

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      .+.|+|+|++++ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++|
T Consensus         2 ~~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            2 DEPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             -CCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCCEEEEEEeCC-CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            357999999999 999999999999999999999999999999999999999999999999999999999999999875

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.80  E-value=1.5e-19  Score=132.09  Aligned_cols=78  Identities=26%  Similarity=0.343  Sum_probs=72.8

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccccee
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQE  140 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~  140 (286)
                      |+|+|++++ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++||..
T Consensus         1 M~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~   78 (88)
T 4fbj_B            1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG   78 (88)
T ss_dssp             CEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred             CEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence            789999999 999999999999999999999999999999999999999999999999999999999999999999853

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.80  E-value=3e-19  Score=130.47  Aligned_cols=84  Identities=14%  Similarity=0.274  Sum_probs=71.2

Q ss_pred             CCCCceeee---eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCC
Q 023198           49 IPNNSVIHN---DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINN  125 (286)
Q Consensus        49 i~~~s~l~l---~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~  125 (286)
                      ..+++++++   .++.|+|+||+++ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +
T Consensus         2 ~~~~~~~~~~~~~~~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~   79 (88)
T 4eew_A            2 MEPNDSTSTAVEEPDSLEVLVKTLD-SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G   79 (88)
T ss_dssp             -------------CCEEEEEEEETT-SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred             CCCCCceEEeecCCCeEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence            456778887   4568999999999 9999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCeEEEEee
Q 023198          126 EDTLQMISV  134 (286)
Q Consensus       126 ~s~i~l~~~  134 (286)
                      |+++++++|
T Consensus        80 g~~i~lv~R   88 (88)
T 4eew_A           80 GKVIHLVER   88 (88)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999865

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.79  E-value=2.8e-19  Score=130.69  Aligned_cols=84  Identities=19%  Similarity=0.381  Sum_probs=69.8

Q ss_pred             CCCceEEEEeeee--eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCC
Q 023198          200 KENEVLQIIRHVK--HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNES  277 (286)
Q Consensus       200 ~~~~~i~l~~~~~--~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~  277 (286)
                      .+++++++.++..  |+|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|+
T Consensus         3 ~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~   81 (88)
T 4eew_A            3 EPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGK   81 (88)
T ss_dssp             ------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTE
T ss_pred             CCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCc
Confidence            4566777765543  9999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             EEEEEcC
Q 023198          278 IVNLTDL  284 (286)
Q Consensus       278 ~l~l~~~  284 (286)
                      +|||+.|
T Consensus        82 ~i~lv~R   88 (88)
T 4eew_A           82 VIHLVER   88 (88)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999976

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.79  E-value=5.4e-19  Score=131.83  Aligned_cols=90  Identities=32%  Similarity=0.440  Sum_probs=74.6

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccceeE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEI  141 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I  141 (286)
                      |+|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+++||.++
T Consensus         1 M~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i   79 (98)
T 1yx5_B            1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDP   79 (98)
T ss_dssp             CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred             CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCC-eEEE
Q 023198          142 FVQTPTS-TVKL  152 (286)
Q Consensus       142 ~V~~~~g-~~~l  152 (286)
                      +.++.+| .-.+
T Consensus        80 ~~~~v~~~~~~~   91 (98)
T 1yx5_B           80 NSSSVDKLAAAL   91 (98)
T ss_dssp             ------------
T ss_pred             ccccCCCchhhh
Confidence            9998877 4433

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.79  E-value=4.9e-19  Score=126.69  Aligned_cols=73  Identities=29%  Similarity=0.254  Sum_probs=70.9

Q ss_pred             eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus         4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r   76 (79)
T 3phx_B            4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   76 (79)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999876

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.78  E-value=5.7e-19  Score=127.84  Aligned_cols=76  Identities=22%  Similarity=0.319  Sum_probs=72.8

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEE-eeccccccccccCCCCeEEEEeec
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKL-IESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      .+-|+|+|++++ |+++++++++++||++||++|++++|+|+++|+|+|+|+. |+|+.+|++|+|.+|++++++++|
T Consensus         8 ~~~~~i~vk~l~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A            8 HSHMKFLVENLN-GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             CCCEEEEEEETT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             cCceEEEEEecC-CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            457999999999 9999999999999999999999999999999999999999 999999999999999999998764

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=1.1e-18  Score=124.41  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             CceEEEEEeCCCCcEE-EEE-EcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           60 GVMKLYFKTPSNEKTF-ELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~-~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      |+|+|+|++.+ |+++ +++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++
T Consensus         1 g~m~i~Vk~~~-g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~   78 (78)
T 2faz_A            1 GSMWIQVRTMD-GRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS   78 (78)
T ss_dssp             -CEEEEEEETT-SSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             CcEEEEEEECC-CCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            57999999999 9985 999 9999999999999999999999999999999999999999999999999999998763

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.78  E-value=6.8e-19  Score=125.92  Aligned_cols=77  Identities=17%  Similarity=0.276  Sum_probs=74.1

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .|+|+|++.+ |+++.++|.+++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|+|.++++|+++++++||
T Consensus         3 ~m~i~vk~~~-g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            3 YIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEEECTT-CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             eEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            5899999999 9999999999999999999999999999999999999999999999999999999999999998875

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.77  E-value=9.4e-19  Score=127.70  Aligned_cols=79  Identities=27%  Similarity=0.363  Sum_probs=75.8

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .+.|+|+|++.+ |+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++||
T Consensus        10 ~~~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           10 GGSMLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             CCCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             CCcEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            357999999999 9999999999999999999999999999999999999999999999999999999999999998875

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.77  E-value=5.5e-19  Score=130.82  Aligned_cols=73  Identities=16%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      +.|+|+||+++ |++++++|++++||++||++|++++|+|+++|||+|+|++|+|+.+|++|+|.++++|+|+.
T Consensus        27 ~mm~I~VKtl~-Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           27 TMIEVVCNDRL-GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CEEEEEEECSS-SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             CeEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            36999999999 99999999999999999999999999999999999999999999999999999999999863

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.77  E-value=1.5e-18  Score=122.84  Aligned_cols=76  Identities=26%  Similarity=0.360  Sum_probs=72.3

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++||
T Consensus         1 M~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999998875

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.77  E-value=6.5e-19  Score=127.53  Aligned_cols=73  Identities=29%  Similarity=0.269  Sum_probs=71.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeE-cCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ-LEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~-L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |.|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+. |+|+.+|++|+|++|++|+++.++
T Consensus        11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A           11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            8999999999999999999999999999999999999999999999999 999999999999999999999874

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.77  E-value=4.1e-19  Score=131.53  Aligned_cols=70  Identities=17%  Similarity=0.163  Sum_probs=68.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      |+|+||+++|+++.+++++++||++||++|++++|+|+++|||+|+|+.|+|+.||++|+|++|++|+|.
T Consensus        29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            8999999999999999999999999999999999999999999999999999999999999999999986

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.77  E-value=1.1e-18  Score=129.83  Aligned_cols=79  Identities=16%  Similarity=0.268  Sum_probs=76.0

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      +..|+|+|++++ |+++.++|.+++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|+|.++++|+++++++||
T Consensus        19 ~~~m~I~Vk~~~-g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           19 GEYIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             CCEEEEEEECTT-CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             CCcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            457999999999 9999999999999999999999999999999999999999999999999999999999999998875

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.77  E-value=2.1e-18  Score=126.51  Aligned_cols=78  Identities=14%  Similarity=0.256  Sum_probs=73.8

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      +..|+|+||+++ |+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|++|+|+++++++
T Consensus         3 ~~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~   80 (90)
T 4dwf_A            3 PDSLEVLVKTLD-SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ   80 (90)
T ss_dssp             CCEEEEEEEETT-CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred             CcEEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence            457999999999 9999999999999999999999999999999999999999999999999999 89999999998754

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.77  E-value=5e-19  Score=128.63  Aligned_cols=74  Identities=22%  Similarity=0.357  Sum_probs=70.1

Q ss_pred             eEEEEEeCCCCcEEEEEEc--CCccHHHHHHHH-HhhhCCCCccEEEEECCEEeecccccccccc-CCCCeEEEEeecc
Q 023198           62 MKLYFKTPSNEKTFELKAN--RSDTIENIKFII-EVREGIPVHEYDIYYGGKLIESYITLDVLNI-NNEDTLQMISVPK  136 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~--~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I-~~~s~i~l~~~~~  136 (286)
                      |+|+||+++ |++++++++  +++||+++|++| ++.+|+|+++|||+|+|+.|+|+.+|++|+| ++|+++++.+++.
T Consensus         2 mqI~VKtl~-g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~   79 (87)
T 2lxa_A            2 VHLTLKKIQ-APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN   79 (87)
T ss_dssp             CEEEEEECS-SSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred             EEEEEEcCC-CCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence            899999999 999999876  999999999999 9999999999999999999999999999999 7999999998764

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.4e-18  Score=126.92  Aligned_cols=78  Identities=36%  Similarity=0.495  Sum_probs=70.3

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      -+|+|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++||
T Consensus         8 ~~~~i~v~~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A            8 QGLQLFIKTLT-GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             --CEEEEEETT-SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred             cceEEEEEeCC-CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            37999999999 9999999999999999999999999999999999999999999999999999999999999999886

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=2.1e-18  Score=125.65  Aligned_cols=79  Identities=20%  Similarity=0.414  Sum_probs=76.5

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ++.|+|+|++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++||
T Consensus         5 ~~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG   83 (87)
T 1wh3_A            5 SSGIQVFVKNPD-GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             SSSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             CCCEEEEEEcCC-CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            568999999999 9999999999999999999999999999999999999999999999999999999999999999887

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.76  E-value=1.9e-18  Score=126.23  Aligned_cols=72  Identities=31%  Similarity=0.527  Sum_probs=69.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.|
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r   72 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA   72 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999865

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=127.59  Aligned_cols=78  Identities=13%  Similarity=0.172  Sum_probs=72.2

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      +.|+|+|++++ |+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++++++|
T Consensus         3 ~~m~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg   80 (88)
T 2hj8_A            3 EPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG   80 (88)
T ss_dssp             CEEEEEEEETT-SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred             ccEEEEEECCC-CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence            46999999999 9999999999999999999999999999999999999999999999999999999999999998876

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.76  E-value=3e-18  Score=126.01  Aligned_cols=77  Identities=34%  Similarity=0.516  Sum_probs=73.9

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      ...|+|+|++.+ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.+|++++++++++
T Consensus        15 ~~~m~i~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           15 RGSMQIFVNTLT-GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CCSEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred             CCeEEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence            458999999999 99999999999999999999999999999999999999999999999999999999999998864

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=2.3e-18  Score=127.31  Aligned_cols=79  Identities=19%  Similarity=0.349  Sum_probs=75.4

Q ss_pred             eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc-ccccccccCCCCeEEEEeecc
Q 023198           58 DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY-ITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        58 ~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      ..+.|+|+||+++ | ++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|+|+++++
T Consensus        12 ~~~~~~I~Vk~~~-~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~   89 (94)
T 2kan_A           12 AVRKIHVTVKFPS-K-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI   89 (94)
T ss_dssp             SSCCEEEEEECSS-C-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred             CCCCEEEEEEcCC-c-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence            4568999999988 7 899999999999999999999999999999999999999999 999999999999999999998


Q ss_pred             cc
Q 023198          137 EL  138 (286)
Q Consensus       137 ~~  138 (286)
                      ||
T Consensus        90 gg   91 (94)
T 2kan_A           90 NR   91 (94)
T ss_dssp             SS
T ss_pred             CC
Confidence            86

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.3e-18  Score=128.37  Aligned_cols=79  Identities=34%  Similarity=0.480  Sum_probs=75.1

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ...|+|+|++.+ |+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus        20 ~~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           20 GRPMQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             --CCEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             CCeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            347999999999 9999999999999999999999999999999999999999999999999999999999999999875

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.76  E-value=3.6e-18  Score=126.72  Aligned_cols=81  Identities=35%  Similarity=0.494  Sum_probs=73.9

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccccee
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQE  140 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~  140 (286)
                      +|+|+|++.+ |+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||..
T Consensus         1 gm~i~vk~~~-g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~   79 (96)
T 3k9o_B            1 GMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD   79 (96)
T ss_dssp             -CEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred             CcEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence            4899999999 999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             EE
Q 023198          141 IF  142 (286)
Q Consensus       141 I~  142 (286)
                      ..
T Consensus        80 ~~   81 (96)
T 3k9o_B           80 LR   81 (96)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.76  E-value=4.5e-18  Score=120.38  Aligned_cols=76  Identities=37%  Similarity=0.510  Sum_probs=73.7

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+|++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++||
T Consensus         1 M~i~vk~~~-g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999998875

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=2.3e-18  Score=124.71  Aligned_cols=78  Identities=33%  Similarity=0.427  Sum_probs=72.8

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|+|+|++++ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++||
T Consensus         2 s~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   79 (85)
T 3n3k_B            2 SHMRIVVKTLM-GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG   79 (85)
T ss_dssp             --CEEEEECGG-GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred             CeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            36899999998 9999999999999999999999999999999999999999999999999999999999999999876

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=5.2e-18  Score=122.82  Aligned_cols=78  Identities=35%  Similarity=0.442  Sum_probs=74.9

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      +.|+|+|++++ |+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++++++++|
T Consensus         2 s~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG   79 (85)
T 3mtn_B            2 SHMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG   79 (85)
T ss_dssp             -CEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred             CeEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence            46899999999 9999999999999999999999999999999999999999999999999999999999999999876

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=6.1e-18  Score=123.73  Aligned_cols=79  Identities=22%  Similarity=0.246  Sum_probs=75.3

Q ss_pred             CceEEEEEeCCCC-cEEEE-EEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           60 GVMKLYFKTPSNE-KTFEL-KANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        60 ~~~~i~Vk~~~~g-~~~~l-~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      +.|+|+|++.+ | +++.+ ++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++++
T Consensus         6 ~~m~i~Vk~~~-g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g   84 (89)
T 1wy8_A            6 SGMWIQVRTID-GSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS   84 (89)
T ss_dssp             SCEEEEEEETT-CSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CcEEEEEEECC-CCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence            57999999999 8 79999 599999999999999999999999999999999999999999999999999999999988


Q ss_pred             ce
Q 023198          138 LQ  139 (286)
Q Consensus       138 ~~  139 (286)
                      |.
T Consensus        85 G~   86 (89)
T 1wy8_A           85 GP   86 (89)
T ss_dssp             SS
T ss_pred             CC
Confidence            73

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.1e-18  Score=126.77  Aligned_cols=73  Identities=19%  Similarity=0.214  Sum_probs=68.9

Q ss_pred             eEEEEEeecceEEEeecC--CcCcHHHHHHHH-HHHhCCCCCceEEEecCeEcCCCCccccCCC-CCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVA--KFDTVRDVKDKL-FREIGQAPDSQRLVFKRQQLEDDRNLASYKI-VNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~--~~~tV~~lK~~I-~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I-~~~~~l~l~~~~  285 (286)
                      |+|+||+++|++++++++  +++||++||++| ++++|+|+++|||+|+|+.|+|+.||++|+| ++|++|++..++
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence            789999999999999866  999999999999 9999999999999999999999999999999 799999998764

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.75  E-value=3.8e-18  Score=139.51  Aligned_cols=98  Identities=28%  Similarity=0.373  Sum_probs=83.0

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccceeE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEI  141 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I  141 (286)
                      |+|+||+++ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++||...
T Consensus         1 MqI~Vk~~~-Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~   79 (169)
T 3l0w_B            1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGE   79 (169)
T ss_dssp             CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred             CEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccccc
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999999998665


Q ss_pred             EeecC----CCeEEEecCCCccH
Q 023198          142 FVQTP----TSTVKLEVRRAHTV  160 (286)
Q Consensus       142 ~V~~~----~g~~~l~v~~~~tV  160 (286)
                      .|+..    -|.-.+.++++.++
T Consensus        80 ~vkfs~~Gd~g~~~i~l~~~~~~  102 (169)
T 3l0w_B           80 TIKFVADGDIGSGSVIIKPFVDM  102 (169)
T ss_dssp             CEEEEEECSSCEEEEEECCBCCS
T ss_pred             cccccccCcccceeEEEecCCCC
Confidence            55432    23444555554444

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.74  E-value=5.7e-18  Score=124.49  Aligned_cols=72  Identities=44%  Similarity=0.631  Sum_probs=70.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|.+|||++|++|+++.|
T Consensus        18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r   89 (91)
T 3v6c_B           18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   89 (91)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=6.1e-18  Score=120.58  Aligned_cols=73  Identities=22%  Similarity=0.403  Sum_probs=70.0

Q ss_pred             eEEEEEeecceEE-Eee-cCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYI-ILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~-~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |+|+||+++|+++ .++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|.
T Consensus         3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            7899999999985 999 999999999999999999999999999999999999999999999999999999873

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.74  E-value=4.3e-18  Score=129.00  Aligned_cols=75  Identities=21%  Similarity=0.244  Sum_probs=69.0

Q ss_pred             eEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCC-------CCeEEEEe
Q 023198           62 MKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINN-------EDTLQMIS  133 (286)
Q Consensus        62 ~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~-------~s~i~l~~  133 (286)
                      |.+|++... ++ ++++++++++||++||++|++++|+|+++|||+|+|+.|+|++||++|||.+       +++++|++
T Consensus         1 m~vFl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl   79 (118)
T 4ajy_B            1 MDVFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred             CceEEEEec-CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence            567777666 55 8999999999999999999999999999999999999999999999999999       99999999


Q ss_pred             eccc
Q 023198          134 VPKE  137 (286)
Q Consensus       134 ~~~~  137 (286)
                      +..+
T Consensus        80 r~~~   83 (118)
T 4ajy_B           80 RADD   83 (118)
T ss_dssp             CCSS
T ss_pred             ecCC
Confidence            9744

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.74  E-value=3.3e-18  Score=130.19  Aligned_cols=75  Identities=21%  Similarity=0.216  Sum_probs=68.0

Q ss_pred             eEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccC-------CCCeEEEEe
Q 023198           62 MKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNIN-------NEDTLQMIS  133 (286)
Q Consensus        62 ~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~-------~~s~i~l~~  133 (286)
                      |+++|+... |+ +++++|++++||++||++|++++|+|+++|||+|+|++|+|++||++|||.       ++++++|++
T Consensus         1 M~mfl~ir~-~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l   79 (118)
T 2fnj_B            1 MDVFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CcEEEEEec-CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence            556666666 65 699999999999999999999999999999999999999999999999999       799999999


Q ss_pred             ecccc
Q 023198          134 VPKEL  138 (286)
Q Consensus       134 ~~~~~  138 (286)
                      + .+|
T Consensus        80 r-~~g   83 (118)
T 2fnj_B           80 R-ADD   83 (118)
T ss_dssp             B-SSS
T ss_pred             c-CCC
Confidence            9 444

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.74  E-value=3.3e-18  Score=141.51  Aligned_cols=84  Identities=33%  Similarity=0.438  Sum_probs=81.3

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ  139 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~  139 (286)
                      -.|+|+|++++ |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||.
T Consensus       104 ~eMqI~VKtl~-Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~  182 (189)
T 3q3f_A          104 YGGQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG  182 (189)
T ss_dssp             CCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred             cceeeeeecCC-CCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence            36999999999 99999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eEEee
Q 023198          140 EIFVQ  144 (286)
Q Consensus       140 ~I~V~  144 (286)
                      .+||+
T Consensus       183 ~~fvk  187 (189)
T 3q3f_A          183 QTFTK  187 (189)
T ss_dssp             CCCCC
T ss_pred             cceEe
Confidence            88886

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.74  E-value=8.9e-18  Score=124.65  Aligned_cols=76  Identities=21%  Similarity=0.335  Sum_probs=69.9

Q ss_pred             CCceEEEEEeCCCCcEEEE--EEcCCccHHHHHHHH-HhhhCCCCccEEEEECCEEeecccccccccc-CCCCeEEEEee
Q 023198           59 SGVMKLYFKTPSNEKTFEL--KANRSDTIENIKFII-EVREGIPVHEYDIYYGGKLIESYITLDVLNI-NNEDTLQMISV  134 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l--~v~~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I-~~~s~i~l~~~  134 (286)
                      .+.|+|+||+++ |+++++  ++++++||++||++| ++..|+|+++|||+|+|+.|+|+.+|++|+| ++|++|+++++
T Consensus        17 ~~~m~I~VKtl~-g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           17 NAAVHLTLKKIQ-APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             -CCEEEEEEECS-SSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred             CCCEEEEEEcCC-CCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence            568999999999 998777  556999999999999 8889999999999999999999999999999 99999999876


Q ss_pred             c
Q 023198          135 P  135 (286)
Q Consensus       135 ~  135 (286)
                      .
T Consensus        96 k   96 (98)
T 4a20_A           96 P   96 (98)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.74  E-value=1.4e-17  Score=120.57  Aligned_cols=77  Identities=18%  Similarity=0.392  Sum_probs=71.6

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhh---hCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVR---EGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      +..|+|+|++.+ |+++.+++++++||++||++|++.   +|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++.+.
T Consensus         3 ~~~m~i~vk~~~-g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            3 PMAVTITLKTLQ-QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             -CCEEEEEEETT-SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CceEEEEEEECC-CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            568999999999 999999999999999999999998   8999999999999999999999999999999999998765


Q ss_pred             c
Q 023198          136 K  136 (286)
Q Consensus       136 ~  136 (286)
                      +
T Consensus        82 ~   82 (85)
T 2wyq_A           82 T   82 (85)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.74  E-value=1.6e-17  Score=126.54  Aligned_cols=78  Identities=36%  Similarity=0.481  Sum_probs=74.8

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|+|+|++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus        34 ~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           34 LAMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SCEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CeEEEEEEcCC-CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            47999999998 9999999999999999999999999999999999999999999999999999999999999999875

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.74  E-value=1.3e-17  Score=127.16  Aligned_cols=78  Identities=36%  Similarity=0.481  Sum_probs=74.9

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|+|+|++++ |+++.+++.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus        34 ~~m~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           34 LAMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             GCEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             ccEEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            47999999999 9999999999999999999999999999999999999999999999999999999999999999875

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.74  E-value=7.4e-18  Score=123.56  Aligned_cols=73  Identities=21%  Similarity=0.443  Sum_probs=70.1

Q ss_pred             eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      .|+|+||+++|+++.+++++++||++||++|++++|+|+++|||+|+|+.|+|+.+|.+|+| +|++|||+.+.
T Consensus         5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~   77 (90)
T 4dwf_A            5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   77 (90)
T ss_dssp             EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred             EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence            38999999999999999999999999999999999999999999999999999999999999 89999999873

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.6e-18  Score=128.73  Aligned_cols=91  Identities=24%  Similarity=0.312  Sum_probs=68.3

Q ss_pred             ccccccccCCCceEEEEeeee--eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccc
Q 023198          192 KTLAYYDIKENEVLQIIRHVK--HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLA  269 (286)
Q Consensus       192 ~tL~~y~i~~~~~i~l~~~~~--~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~  269 (286)
                      ..+++|.|.  +|.++.++..  +.|.||+ +|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus         8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~   84 (101)
T 3m63_B            8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE   84 (101)
T ss_dssp             -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred             CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence            457788775  4555555444  6788886 8999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCEEEEEcCC
Q 023198          270 SYKIVNESIVNLTDLG  285 (286)
Q Consensus       270 ~y~I~~~~~l~l~~~~  285 (286)
                      +|||++|++|+|+.+.
T Consensus        85 ~~gI~~g~tI~lv~~~  100 (101)
T 3m63_B           85 SYHIQDGHSVHLVKSQ  100 (101)
T ss_dssp             TTTCCTTEEEEECCCC
T ss_pred             HCCCCCCCEEEEEeCC
Confidence            9999999999998763

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.73  E-value=1.2e-17  Score=118.08  Aligned_cols=72  Identities=31%  Similarity=0.527  Sum_probs=69.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..|
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~   72 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA   72 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            689999999999999999999999999999999999999999999999999999999999999999999875

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.73  E-value=1.4e-17  Score=128.24  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=73.3

Q ss_pred             eCCceEEEEEeCCCCcEE-EEEEcCCccHHHHHHHH-----HhhhCCCC--ccEEEEECCEEeeccccccccccCCC---
Q 023198           58 DSGVMKLYFKTPSNEKTF-ELKANRSDTIENIKFII-----EVREGIPV--HEYDIYYGGKLIESYITLDVLNINNE---  126 (286)
Q Consensus        58 ~~~~~~i~Vk~~~~g~~~-~l~v~~~~tV~~lK~~I-----~~~~gip~--~~q~L~~~g~~L~D~~tL~~~~I~~~---  126 (286)
                      ....|+|+||+++ |+.+ ++++++++||++||++|     ++++|+|+  ++|||+|+|+.|+|+.||++|+|+.+   
T Consensus        13 ~~~~~~i~~kt~~-G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~   91 (126)
T 1se9_A           13 VHNQLEIKFRLTD-GSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA   91 (126)
T ss_dssp             SCCCEEEEEEETT-SCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred             hcccEEEEEEECC-CCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence            4568999999999 9988 79999999999999999     56778997  89999999999999999999999998   


Q ss_pred             ---CeEEEEeecccc
Q 023198          127 ---DTLQMISVPKEL  138 (286)
Q Consensus       127 ---s~i~l~~~~~~~  138 (286)
                         ++++|+++++++
T Consensus        92 ~~v~tmhlVlrl~g~  106 (126)
T 1se9_A           92 GAVTTMHVIIQAPVT  106 (126)
T ss_dssp             TCCEEEEEEECCCSS
T ss_pred             CCcEEEEEEeccCCc
Confidence               689999998875

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.73  E-value=7.8e-18  Score=124.25  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=71.7

Q ss_pred             eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           58 DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        58 ~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      .+..|+|+|++   |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++|
T Consensus        16 ~~~~m~I~Vk~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G   92 (93)
T 2l7r_A           16 PRGSMQLFVRA---QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG   92 (93)
T ss_dssp             ----CEEEEES---SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred             CCCcEEEEEEC---CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            35679999997   689999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             c
Q 023198          138 L  138 (286)
Q Consensus       138 ~  138 (286)
                      |
T Consensus        93 G   93 (93)
T 2l7r_A           93 G   93 (93)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.73  E-value=9.8e-18  Score=122.25  Aligned_cols=72  Identities=31%  Similarity=0.522  Sum_probs=70.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus        13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r   84 (88)
T 3dbh_I           13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR   84 (88)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999875

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=2e-17  Score=118.59  Aligned_cols=77  Identities=18%  Similarity=0.333  Sum_probs=73.0

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      .+.|+|+|++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++
T Consensus         5 ~~~m~i~vk~~~-g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~   81 (81)
T 2dzi_A            5 SSGMQLTVKALQ-GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL   81 (81)
T ss_dssp             SSSEEEEEEETT-SCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred             CCcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            357999999998 99999999999999999999999999999999999999999999999999999999999998763

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.73  E-value=7.2e-18  Score=120.55  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+++.++|.+++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~   75 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   75 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence            789999999999999999999999999999999999999999999999999999999999999999999875

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.8e-17  Score=120.01  Aligned_cols=72  Identities=47%  Similarity=0.619  Sum_probs=70.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|+++.|
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r   75 (85)
T 3n3k_B            4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK   75 (85)
T ss_dssp             CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence            789999999999999999999999999999999999999999999999999999999999999999999876

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=9.9e-18  Score=126.68  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~   73 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVS   73 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEc
Confidence            689999999999999999999999999999999999999999999999999999999999999999999876

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.72  E-value=7.6e-18  Score=123.04  Aligned_cols=73  Identities=29%  Similarity=0.254  Sum_probs=70.4

Q ss_pred             eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus         4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~   76 (88)
T 2hj8_A            4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   76 (88)
T ss_dssp             EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            3889999999999999999999999999999999999999999999999999999999999999999999876

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.9e-17  Score=120.91  Aligned_cols=73  Identities=37%  Similarity=0.594  Sum_probs=69.8

Q ss_pred             eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .|+|+|++++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus         9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r   81 (88)
T 1sif_A            9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   81 (88)
T ss_dssp             -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred             ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999876

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.72  E-value=3.5e-17  Score=116.17  Aligned_cols=72  Identities=26%  Similarity=0.339  Sum_probs=69.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |.|+|+. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+.
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            7899998 99999999999999999999999999999999999999999999999999999999999999875

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2e-17  Score=123.26  Aligned_cols=72  Identities=46%  Similarity=0.660  Sum_probs=70.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus        23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r   94 (98)
T 4hcn_B           23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   94 (98)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=4.1e-17  Score=120.86  Aligned_cols=74  Identities=22%  Similarity=0.434  Sum_probs=70.9

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhh---hCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVR---EGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      |+|+|++++ |+.+.+++++++||++||++|++.   +|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.+
T Consensus         1 M~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~   77 (95)
T 1uel_A            1 MQVTLKTLQ-QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETT-CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCC-CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence            789999999 999999999999999999999999   89999999999999999999999999999999999988754

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.71  E-value=3.6e-17  Score=118.48  Aligned_cols=73  Identities=22%  Similarity=0.291  Sum_probs=70.1

Q ss_pred             eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHH---hCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFRE---IGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .|+|+||+.+|+++.+++++++||++||++|+++   +|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus         5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~   80 (85)
T 2wyq_A            5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   80 (85)
T ss_dssp             CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred             eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence            4899999999999999999999999999999998   899999999999999999999999999999999999875

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=1.5e-17  Score=123.03  Aligned_cols=70  Identities=20%  Similarity=0.253  Sum_probs=63.5

Q ss_pred             EEEEEeec----ceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          214 SIFVKLLN----GRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       214 ~i~vk~~~----g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      ++.|+..+    ++++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.
T Consensus        17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~   90 (100)
T 1wju_A           17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE   90 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred             EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence            34455555    77999999999999999999999999999999999999999999999999999999996654

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=1.5e-17  Score=122.72  Aligned_cols=78  Identities=19%  Similarity=0.270  Sum_probs=73.1

Q ss_pred             CceEEEEEeCCCCc--EEEEEEcCCccHHHHHHHHHhhh--CCCCccEEEEECCEEeecccccccc--ccCCCCeEEEEe
Q 023198           60 GVMKLYFKTPSNEK--TFELKANRSDTIENIKFIIEVRE--GIPVHEYDIYYGGKLIESYITLDVL--NINNEDTLQMIS  133 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~--~~~l~v~~~~tV~~lK~~I~~~~--gip~~~q~L~~~g~~L~D~~tL~~~--~I~~~s~i~l~~  133 (286)
                      +.|+|+||+.+ |+  ++.+++++++||++||++|++++  |+|+++|||+|+|+.|+|+.+|++|  +|.++++++|++
T Consensus         6 ~~m~i~Vk~~~-~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~   84 (93)
T 1wgd_A            6 SGVTLLVKSPN-QRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             CCCEEEEECSS-SSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             cEEEEEEEeCC-CCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence            46899999998 88  67777889999999999999998  9999999999999999999999999  999999999999


Q ss_pred             ecccc
Q 023198          134 VPKEL  138 (286)
Q Consensus       134 ~~~~~  138 (286)
                      ++++|
T Consensus        85 ~~~gg   89 (93)
T 1wgd_A           85 NVKSG   89 (93)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            98876

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.71  E-value=3.7e-17  Score=115.58  Aligned_cols=72  Identities=46%  Similarity=0.654  Sum_probs=69.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..+
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~   72 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            679999999999999999999999999999999999999999999999999999999999999999999876

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.71  E-value=2.2e-17  Score=125.07  Aligned_cols=72  Identities=22%  Similarity=0.293  Sum_probs=66.3

Q ss_pred             eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCC-------CCEEEEEcC
Q 023198          213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVN-------ESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~-------~~~l~l~~~  284 (286)
                      |.++++...++ ++.+++.+++||.+||++|+.++|+|+++|||+|+|+.|+|++||++|||++       ++||||++|
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            45666666666 8889999999999999999999999999999999999999999999999999       999999986

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.7e-17  Score=125.43  Aligned_cols=75  Identities=19%  Similarity=0.273  Sum_probs=70.3

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      |+|+||+++ |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.+.
T Consensus         2 m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~   76 (106)
T 3m62_B            2 VSLTFKNFK-KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK   76 (106)
T ss_dssp             -CEEEECTT-CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred             EEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence            789999999 999999999999999999999999999999999999999999999999999999999999987643

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=4.7e-17  Score=124.09  Aligned_cols=79  Identities=16%  Similarity=0.224  Sum_probs=71.3

Q ss_pred             eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHh------hhCC--CCccEEEEECCEEeeccccccccccCCC--C
Q 023198           58 DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEV------REGI--PVHEYDIYYGGKLIESYITLDVLNINNE--D  127 (286)
Q Consensus        58 ~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gi--p~~~q~L~~~g~~L~D~~tL~~~~I~~~--s  127 (286)
                      ....|+|+||+++ |++++++|++++||++||++|++      ++|+  |+++|||+|+|+.|+|+.||++|+|..+  +
T Consensus        13 ~~~~m~I~vKtl~-G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~   91 (116)
T 1wgh_A           13 PADMINLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT   91 (116)
T ss_dssp             CSSSEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred             CCCeEEEEEEeCC-CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence            4557999999999 99999999999999999999999      6675  6999999999999999999999999866  5


Q ss_pred             eEEEEeeccc
Q 023198          128 TLQMISVPKE  137 (286)
Q Consensus       128 ~i~l~~~~~~  137 (286)
                      ++||++++..
T Consensus        92 tlhLvlr~~~  101 (116)
T 1wgh_A           92 VMHLVARETL  101 (116)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEEEccCCC
Confidence            7888888764

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.3e-18  Score=133.27  Aligned_cols=101  Identities=25%  Similarity=0.340  Sum_probs=92.5

Q ss_pred             ccceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeeee--
Q 023198          136 KELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVK--  212 (286)
Q Consensus       136 ~~~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~--  212 (286)
                      .|.++|+|++.+| ++.+++++++||.+||++|+. ..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..+..  
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG   85 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   85 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHH-HHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHH-HHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            3668999999999 999999999999999999999 999999999999999999999999999999999999998865  


Q ss_pred             eEEEEE---eecceEEEeecCCcCcHHH
Q 023198          213 HSIFVK---LLNGRYIILEVAKFDTVRD  237 (286)
Q Consensus       213 ~~i~vk---~~~g~~~~l~v~~~~tV~~  237 (286)
                      ..++++   ..+|+++++++.+++||++
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           86 SMGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             ceeeccccccccCceEEEEeccccccCC
Confidence            667777   5678999999999988864

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.55  E-value=6.2e-19  Score=125.11  Aligned_cols=75  Identities=15%  Similarity=0.439  Sum_probs=72.6

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      |+|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++|
T Consensus         1 M~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNS-SYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            789999999 999999999999999999999999999999999999999999999999999999999999999875

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.71  E-value=1.7e-17  Score=123.40  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=70.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.++|.+++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus        22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~   93 (97)
T 1wyw_B           22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   93 (97)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999875

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.7e-17  Score=118.23  Aligned_cols=72  Identities=44%  Similarity=0.595  Sum_probs=70.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++.|
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r   75 (85)
T 3mtn_B            4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR   75 (85)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence            789999999999999999999999999999999999999999999999999999999999999999999876

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.71  E-value=1.6e-17  Score=126.40  Aligned_cols=72  Identities=21%  Similarity=0.278  Sum_probs=66.4

Q ss_pred             eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCC-------CCCEEEEEcC
Q 023198          213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV-------NESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~-------~~~~l~l~~~  284 (286)
                      |.++++...|+ ++.+++.+++||++||++|++++|||+++|||+|+|+.|+|++||++|||+       +++||+|++|
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            45666666775 699999999999999999999999999999999999999999999999999       7999999887

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=4.5e-17  Score=120.62  Aligned_cols=72  Identities=24%  Similarity=0.344  Sum_probs=69.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHH---hCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFRE---IGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+++.+++++++||++||++|++.   +|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~   75 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT   75 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEe
Confidence            689999999999999999999999999999999   899999999999999999999999999999999999864

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.5e-17  Score=119.10  Aligned_cols=72  Identities=22%  Similarity=0.274  Sum_probs=70.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~   79 (87)
T 1wh3_A            8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.71  E-value=4e-17  Score=121.06  Aligned_cols=72  Identities=46%  Similarity=0.657  Sum_probs=69.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r   73 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   73 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            789999999999999999999999999999999999999999999999999999999999999999999875

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.70  E-value=3.2e-17  Score=121.10  Aligned_cols=71  Identities=27%  Similarity=0.297  Sum_probs=68.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC-CccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~-~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++| ++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ .||++|+|++|++|+|+.+
T Consensus        16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r   87 (94)
T 2kan_A           16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK   87 (94)
T ss_dssp             EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence            8899999888 899999999999999999999999999999999999999999 9999999999999999876

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.70  E-value=9.1e-17  Score=114.02  Aligned_cols=73  Identities=19%  Similarity=0.425  Sum_probs=69.4

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      .|+|+|++ + |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|+++++..++
T Consensus         4 ~m~i~vk~-~-g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            4 SLNIHIKS-G-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEEE-T-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            38899999 7 9999999999999999999999999999999999999999999999999999999999998654

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=4.4e-17  Score=116.84  Aligned_cols=73  Identities=30%  Similarity=0.382  Sum_probs=70.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |.|+|+.++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+-
T Consensus         8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            8899999999999999999999999999999999999999999999999999999999999999999998763

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.70  E-value=2.8e-17  Score=121.95  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             eeEEEEEeecceEEEe--ecCCcCcHHHHHHHH-HHHhCCCCCceEEEecCeEcCCCCccccCCC-CCCCEEEEEcC
Q 023198          212 KHSIFVKLLNGRYIIL--EVAKFDTVRDVKDKL-FREIGQAPDSQRLVFKRQQLEDDRNLASYKI-VNESIVNLTDL  284 (286)
Q Consensus       212 ~~~i~vk~~~g~~~~l--~v~~~~tV~~lK~~I-~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I-~~~~~l~l~~~  284 (286)
                      .|+|+||+++|+++++  ++++++||++||++| +++.|+|+++|||+|+|+.|+|+.+|++|+| ++|++|+++..
T Consensus        19 ~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           19 AVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             CEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence            3899999999998777  566999999999999 8889999999999999999999999999999 99999999864

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.70  E-value=2.2e-17  Score=125.80  Aligned_cols=80  Identities=14%  Similarity=0.226  Sum_probs=76.5

Q ss_pred             eCCceEEEEEeC---CCCcEEEEEEcC-CccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           58 DSGVMKLYFKTP---SNEKTFELKANR-SDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        58 ~~~~~~i~Vk~~---~~g~~~~l~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      .++.|+|+|+++   + |+++.+++++ ++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++
T Consensus        24 ~~~~i~i~Vk~~~~~~-g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~  102 (111)
T 1we6_A           24 HPGPATIRVSKPNEND-GQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL  102 (111)
T ss_dssp             CCSCEEEEECCTTCSS-SCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred             CCCcEEEEEEecccCC-CcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence            367899999998   7 9999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             ecccc
Q 023198          134 VPKEL  138 (286)
Q Consensus       134 ~~~~~  138 (286)
                      +++||
T Consensus       103 r~~GG  107 (111)
T 1we6_A          103 RERSG  107 (111)
T ss_dssp             SSCCS
T ss_pred             EcCCC
Confidence            99887

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=5.7e-18  Score=126.84  Aligned_cols=89  Identities=20%  Similarity=0.403  Sum_probs=66.4

Q ss_pred             CcccccCCCCCceeee-eCCc--eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccc
Q 023198           42 LTVIDYGIPNNSVIHN-DSGV--MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL  118 (286)
Q Consensus        42 ~~l~~y~i~~~s~l~l-~~~~--~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL  118 (286)
                      ...+||.|  ++|.+| +.+.  +.|+|++ + |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|
T Consensus         8 ~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL   83 (101)
T 3m63_B            8 HPMSDYDI--PTTENLYFQGAMSLNIHIKS-G-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV   83 (101)
T ss_dssp             -----------------------CCEEEEC-S-SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred             CCccccCC--CcceeecccCCcEEEEEEEE-C-CEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence            46889999  555555 4554  5677776 6 99999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCeEEEEee
Q 023198          119 DVLNINNEDTLQMISV  134 (286)
Q Consensus       119 ~~~~I~~~s~i~l~~~  134 (286)
                      ++|||++|++|+++.+
T Consensus        84 ~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           84 ESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTTCCTTEEEEECCC
T ss_pred             HHCCCCCCCEEEEEeC
Confidence            9999999999998765

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=6.4e-17  Score=120.89  Aligned_cols=78  Identities=18%  Similarity=0.256  Sum_probs=73.8

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .+.|+|+|++.+ |+ +.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++++
T Consensus        20 ~~~m~I~Vk~~~-g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~   97 (100)
T 1yqb_A           20 PHLIKVTVKTPK-DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   97 (100)
T ss_dssp             TTEEEEEEECSS-CE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CCeEEEEEEcCC-Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence            567999999998 76 7999999999999999999999999999999999999999999999999999999999998765

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=1.3e-17  Score=124.87  Aligned_cols=77  Identities=14%  Similarity=0.151  Sum_probs=72.0

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc---------------cEEEEECCEEee-ccccccccccC
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH---------------EYDIYYGGKLIE-SYITLDVLNIN  124 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~---------------~q~L~~~g~~L~-D~~tL~~~~I~  124 (286)
                      .|+|+|++++ |++++++|.+++||++||++|++++|+|+.               +|+|+|+|+.|. |+.||++|||.
T Consensus         7 ~M~I~Vk~l~-g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~   85 (105)
T 1v2y_A            7 GMTVRVCKMD-GEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             SEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             cEEEEEEecC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence            5999999999 999999999999999999999999999884               579999999996 67999999999


Q ss_pred             CCCeEEEEeecccc
Q 023198          125 NEDTLQMISVPKEL  138 (286)
Q Consensus       125 ~~s~i~l~~~~~~~  138 (286)
                      +|++|+++.++++.
T Consensus        86 ~g~~l~lv~~lr~~   99 (105)
T 1v2y_A           86 NRDEVSFIKKLGQK   99 (105)
T ss_dssp             SSEEEEEEECSCSC
T ss_pred             CCCEEEEEehhccC
Confidence            99999999998864

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=6.8e-17  Score=118.11  Aligned_cols=72  Identities=22%  Similarity=0.448  Sum_probs=69.3

Q ss_pred             eEEEEEeecc-eEEEe-ecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNG-RYIIL-EVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g-~~~~l-~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++| +++.+ ++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++.+
T Consensus         8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   81 (89)
T 1wy8_A            8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR   81 (89)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred             EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence            8999999999 79999 599999999999999999999999999999999999999999999999999999876

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=6.8e-17  Score=122.08  Aligned_cols=72  Identities=28%  Similarity=0.376  Sum_probs=70.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++.+++||++||.+|++++|+|+++|+|+|+|+.|+|+.+|.+|||++|++|||+.+
T Consensus        24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~   95 (106)
T 1ttn_A           24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS   95 (106)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.69  E-value=9e-17  Score=122.40  Aligned_cols=72  Identities=46%  Similarity=0.657  Sum_probs=70.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus        36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r  107 (111)
T 3vdz_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=9e-17  Score=121.40  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=73.4

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      ..|+|+|++++ |+++.+++.+++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++.+.
T Consensus        22 ~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~   98 (106)
T 1ttn_A           22 YECQLRLRLST-GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV   98 (106)
T ss_dssp             CSEEEEEEETT-TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             CeEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            46999999999 999999999999999999999999999999999999999999999999999999999999987653

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=6.1e-17  Score=119.83  Aligned_cols=75  Identities=15%  Similarity=0.065  Sum_probs=66.1

Q ss_pred             EEEEEeCC-C--CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           63 KLYFKTPS-N--EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        63 ~i~Vk~~~-~--g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .+.|+... +  +++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.||++|+|+++++| +++++++.
T Consensus        17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~   94 (100)
T 1wju_A           17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS   94 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred             EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence            34555444 1  6799999999999999999999999999999999999999999999999999999999 67777653

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.69  E-value=1.4e-16  Score=118.87  Aligned_cols=73  Identities=26%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             eEEEEEeecc--eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCC-CCCCEEEEEcCC
Q 023198          213 HSIFVKLLNG--RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI-VNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I-~~~~~l~l~~~~  285 (286)
                      |.++|+...+  .++++++.+++||++||++|++++|+|+++|||+|+|+.++|++||.+||| ++|+++||...+
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~  100 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS  100 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence            7899998874  789999999999999999999999999999999999999999999999999 699999999865

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.69  E-value=7.7e-17  Score=124.58  Aligned_cols=79  Identities=16%  Similarity=0.210  Sum_probs=71.7

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHh------hhCCC--CccEEEEECCEEeeccccccccccCCCC--e
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEV------REGIP--VHEYDIYYGGKLIESYITLDVLNINNED--T  128 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gip--~~~q~L~~~g~~L~D~~tL~~~~I~~~s--~  128 (286)
                      ...|.|+||+++ |+++++++++++||++||++|++      ++|+|  +++|||+|+|+.|+|+.||++|+|..++  +
T Consensus        15 ~~~m~I~vktl~-G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t   93 (125)
T 2gow_A           15 ADMINLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   93 (125)
T ss_dssp             TTCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred             CCeEEEEEEeCC-CCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence            446999999999 99999999999999999999999      77885  8999999999999999999999999776  7


Q ss_pred             EEEEeecccc
Q 023198          129 LQMISVPKEL  138 (286)
Q Consensus       129 i~l~~~~~~~  138 (286)
                      ++|+++++++
T Consensus        94 lhlv~r~~~~  103 (125)
T 2gow_A           94 MHLVARETLP  103 (125)
T ss_dssp             EEEEECSCCS
T ss_pred             EEEEecCCCC
Confidence            8888887653

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.68  E-value=8.1e-17  Score=122.70  Aligned_cols=72  Identities=46%  Similarity=0.657  Sum_probs=70.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus        36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r  107 (111)
T 2ojr_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.68  E-value=1.4e-16  Score=118.57  Aligned_cols=72  Identities=46%  Similarity=0.657  Sum_probs=69.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..+
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   72 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            689999999999999999999999999999999999999999999999999999999999999999998765

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=1.3e-16  Score=121.63  Aligned_cols=73  Identities=18%  Similarity=0.326  Sum_probs=67.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHH------HhCC--CCCceEEEecCeEcCCCCccccCCCCCC--CEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFR------EIGQ--APDSQRLVFKRQQLEDDRNLASYKIVNE--SIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gi--~~~~q~L~~~g~~L~d~~tL~~y~I~~~--~~l~l~  282 (286)
                      |.|+||+++|+++++++++++||++||++|++      ++|+  |+++|||+|+|+.|+|+.||++|+|+.+  +++||+
T Consensus        17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv   96 (116)
T 1wgh_A           17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            88999999999999999999999999999999      6785  6999999999999999999999999766  689998


Q ss_pred             cCC
Q 023198          283 DLG  285 (286)
Q Consensus       283 ~~~  285 (286)
                      .|.
T Consensus        97 lr~   99 (116)
T 1wgh_A           97 ARE   99 (116)
T ss_dssp             ECS
T ss_pred             ccC
Confidence            774

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.68  E-value=9.8e-17  Score=118.32  Aligned_cols=70  Identities=21%  Similarity=0.324  Sum_probs=67.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+  |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus        20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r   89 (93)
T 2l7r_A           20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR   89 (93)
T ss_dssp             CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred             EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            8899997  899999999999999999999999999999999999999999999999999999999999876

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=3.1e-17  Score=122.91  Aligned_cols=72  Identities=22%  Similarity=0.280  Sum_probs=67.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC---------------CceEEEecCeEcC-CCCccccCCCCCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP---------------DSQRLVFKRQQLE-DDRNLASYKIVNE  276 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~---------------~~q~L~~~g~~L~-d~~tL~~y~I~~~  276 (286)
                      |.|+|++++|+++.++|++++||++||++|++++|+|+               ++|+|+|+|+.|. |+.||++|||++|
T Consensus         8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g   87 (105)
T 1v2y_A            8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence            89999999999999999999999999999999999988               4679999999996 6699999999999


Q ss_pred             CEEEEEcC
Q 023198          277 SIVNLTDL  284 (286)
Q Consensus       277 ~~l~l~~~  284 (286)
                      ++||++.+
T Consensus        88 ~~l~lv~~   95 (105)
T 1v2y_A           88 DEVSFIKK   95 (105)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEeh
Confidence            99999875

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.50  E-value=3.5e-18  Score=121.23  Aligned_cols=72  Identities=18%  Similarity=0.331  Sum_probs=69.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.|
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r   72 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR   72 (76)
Confidence            678999999999999999999999999999999999999999999999999999999999999999999865

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1.1e-16  Score=118.03  Aligned_cols=72  Identities=25%  Similarity=0.274  Sum_probs=68.3

Q ss_pred             eEEEEEeecce--EEEeecCCcCcHHHHHHHHHHHh--CCCCCceEEEecCeEcCCCCccccC--CCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGR--YIILEVAKFDTVRDVKDKLFREI--GQAPDSQRLVFKRQQLEDDRNLASY--KIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~--gi~~~~q~L~~~g~~L~d~~tL~~y--~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+  ++.+++++++||++||++|++++  |+|+++|||+|+|+.|+|+.+|++|  +|+++++|||+.+
T Consensus         8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A            8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence            88999999998  67888889999999999999999  9999999999999999999999999  9999999999875

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.67  E-value=3.8e-16  Score=116.50  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             ceEEEEEeCC-CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccccccc-CCCCeEEEEeec
Q 023198           61 VMKLYFKTPS-NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNI-NNEDTLQMISVP  135 (286)
Q Consensus        61 ~~~i~Vk~~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I-~~~s~i~l~~~~  135 (286)
                      .|+|+|+... .+.+++++++|++||++||++|++++|+|+++|||+|+|+.++|++||++||| ++|++++|++..
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~  100 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS  100 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence            6899999886 13799999999999999999999999999999999999999999999999999 599999998753

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=1.7e-16  Score=119.05  Aligned_cols=79  Identities=19%  Similarity=0.310  Sum_probs=72.7

Q ss_pred             CceEEEEEeCCCC---cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc-ccccccccCCCCeEEEEeec
Q 023198           60 GVMKLYFKTPSNE---KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY-ITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        60 ~~~~i~Vk~~~~g---~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ..|+|+|++.+.+   +++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|+++.+.
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~   85 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence            4699999997622   7999999999999999999999999999999999999999988 69999999999999999988


Q ss_pred             ccc
Q 023198          136 KEL  138 (286)
Q Consensus       136 ~~~  138 (286)
                      +++
T Consensus        86 ~gg   88 (102)
T 1v5o_A           86 NVG   88 (102)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            775

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.67  E-value=2.3e-16  Score=128.85  Aligned_cols=72  Identities=46%  Similarity=0.660  Sum_probs=70.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||++||++|++++|+|+++|||+|+|+.|+|+.+|++|+|++|++||++.|
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr   72 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999875

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.66  E-value=3.5e-16  Score=119.92  Aligned_cols=80  Identities=18%  Similarity=0.310  Sum_probs=74.5

Q ss_pred             CCceEEEEEeCC---------CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeE
Q 023198           59 SGVMKLYFKTPS---------NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL  129 (286)
Q Consensus        59 ~~~~~i~Vk~~~---------~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i  129 (286)
                      ++.+.|.|+.++         .|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|
T Consensus        23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i  102 (115)
T 1we7_A           23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI  102 (115)
T ss_dssp             CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred             CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence            567888888763         27899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecccc
Q 023198          130 QMISVPKEL  138 (286)
Q Consensus       130 ~l~~~~~~~  138 (286)
                      +|+++++||
T Consensus       103 ~lv~rl~GG  111 (115)
T 1we7_A          103 HLALKERSG  111 (115)
T ss_dssp             EEEECCCSC
T ss_pred             EEEEEcCCC
Confidence            999999987

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.66  E-value=7.1e-16  Score=115.39  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=72.2

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      ...|+|+|++.  |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+++.
T Consensus        23 ~~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~   99 (101)
T 2klc_A           23 PKIMKVTVKTP--KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN   99 (101)
T ss_dssp             CCCEEEEEECS--SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred             CCeEEEEEEeC--CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            35799999987  688999999999999999999999999999999999999999999999999999999999988754

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=1.3e-16  Score=118.34  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ...|+|+|++.  |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++++
T Consensus        15 ~~~m~i~Vk~~--g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g   92 (96)
T 1wx8_A           15 SRIIRVSVKTP--QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG   92 (96)
T ss_dssp             SCEEEEEEECS--SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred             CCcEEEEEEEC--CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence            34799999987  7999999999999999999999999999999999999999999999999999999999999998775

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.66  E-value=1.3e-16  Score=118.56  Aligned_cols=73  Identities=15%  Similarity=0.298  Sum_probs=65.6

Q ss_pred             CCceEEEEEeCCCCc--EEEEEEcCCccHHHHHHHHHhh-hCCCC-ccEEEEECCEEeecccccccc--ccCCCCeEEEE
Q 023198           59 SGVMKLYFKTPSNEK--TFELKANRSDTIENIKFIIEVR-EGIPV-HEYDIYYGGKLIESYITLDVL--NINNEDTLQMI  132 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~--~~~l~v~~~~tV~~lK~~I~~~-~gip~-~~q~L~~~g~~L~D~~tL~~~--~I~~~s~i~l~  132 (286)
                      .+.|+|+||+++ |+  ++++++++++||++||++|+++ .|+|+ ++|||+|+|+.|+|+.+|++|  +|.++++|+|+
T Consensus        21 ~~~m~I~VK~~~-g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           21 GHPVTLIIKAPN-QKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             --CEEEEEECTT-SSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CCeEEEEEEcCC-CCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            457999999998 88  7899999999999999999986 56664 999999999999999999999  99999999874

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.65  E-value=7.6e-18  Score=131.65  Aligned_cols=76  Identities=36%  Similarity=0.510  Sum_probs=0.0

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+|++++ |+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||
T Consensus         1 M~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG   76 (128)
T 3u5e_m            1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (128)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999999887

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.65  E-value=4.4e-16  Score=116.56  Aligned_cols=71  Identities=20%  Similarity=0.217  Sum_probs=68.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||.. |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus        26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~   96 (101)
T 2klc_A           26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK   96 (101)
T ss_dssp             EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence            88999988 889999999999999999999999999999999999999999999999999999999999876

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=2.8e-16  Score=117.35  Aligned_cols=71  Identities=21%  Similarity=0.266  Sum_probs=68.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+.+|+ +.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus        23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r   93 (100)
T 1yqb_A           23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK   93 (100)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred             EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence            88999999886 689999999999999999999999999999999999999999999999999999999876

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.65  E-value=7.6e-16  Score=111.57  Aligned_cols=70  Identities=24%  Similarity=0.284  Sum_probs=65.8

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .+++.++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++..
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            4456679999999999999999999999999999999999999999999999999999999999999864

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=4.7e-16  Score=117.45  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=72.8

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|+|+|++.. |+ +.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++++
T Consensus        16 ~~m~I~Vk~~~-g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~   92 (106)
T 1wx7_A           16 HLIKVTVKTPK-DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   92 (106)
T ss_dssp             SEEEEEEECSS-CE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred             ceEEEEEEeCC-Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence            46999999998 76 7999999999999999999999999999999999999999999999999999999999998765

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.65  E-value=1.5e-16  Score=118.34  Aligned_cols=70  Identities=23%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             eEEEEEeecce--EEEeecCCcCcHHHHHHHHHHH-hCCC-CCceEEEecCeEcCCCCccccC--CCCCCCEEEEE
Q 023198          213 HSIFVKLLNGR--YIILEVAKFDTVRDVKDKLFRE-IGQA-PDSQRLVFKRQQLEDDRNLASY--KIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~-~gi~-~~~q~L~~~g~~L~d~~tL~~y--~I~~~~~l~l~  282 (286)
                      |+|+||+++|+  ++++++++++||++||++|+++ .|+| +++|||+|+|+.|+|+.||++|  +|++|++|||+
T Consensus        24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            89999999998  6789999999999999999996 5666 5999999999999999999999  99999999985

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.65  E-value=3e-16  Score=120.78  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             eEEEEEeecceEE-EeecCCcCcHHHHHHHH-----HHHhCCCC--CceEEEecCeEcCCCCccccCCCCCC------CE
Q 023198          213 HSIFVKLLNGRYI-ILEVAKFDTVRDVKDKL-----FREIGQAP--DSQRLVFKRQQLEDDRNLASYKIVNE------SI  278 (286)
Q Consensus       213 ~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I-----~~~~gi~~--~~q~L~~~g~~L~d~~tL~~y~I~~~------~~  278 (286)
                      |.|++|+++|+.+ .+++++++||++||++|     ++++|+|+  ++|||+|+|+.|+|+.||++|+|+.|      +|
T Consensus        17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t   96 (126)
T 1se9_A           17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   96 (126)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence            8999999999888 79999999999999999     45678987  89999999999999999999999998      78


Q ss_pred             EEEEcCC
Q 023198          279 VNLTDLG  285 (286)
Q Consensus       279 l~l~~~~  285 (286)
                      +||++|.
T Consensus        97 mhlVlrl  103 (126)
T 1se9_A           97 MHVIIQA  103 (126)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9998763

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.65  E-value=1.1e-17  Score=133.90  Aligned_cols=76  Identities=36%  Similarity=0.510  Sum_probs=0.0

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+|++++ |++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||
T Consensus         1 MqI~VK~l~-G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG   76 (152)
T 3u5c_f            1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999999987

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=7.8e-16  Score=119.51  Aligned_cols=77  Identities=18%  Similarity=0.250  Sum_probs=70.4

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|+|+|++.  |+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.+++++
T Consensus        31 ~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg  107 (125)
T 1j8c_A           31 KIIKVTVKTP--KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN  107 (125)
T ss_dssp             CCEEEEEECS--SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred             CcEEEEEEeC--CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence            4799999987  7899999999999999999999999999999999999999999999999999999999999998876

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.64  E-value=1.9e-16  Score=117.47  Aligned_cols=71  Identities=21%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||+. |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||.+|+|++|++|||+.+
T Consensus        18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   88 (96)
T 1wx8_A           18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   88 (96)
T ss_dssp             EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence            88999988 899999999999999999999999999999999999999999999999999999999999876

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.64  E-value=4.7e-16  Score=118.45  Aligned_cols=72  Identities=26%  Similarity=0.353  Sum_probs=69.4

Q ss_pred             eEEEEEee---cceEEEeecCC-cCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLL---NGRYIILEVAK-FDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~---~g~~~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+|+++   +|+++.+++++ ++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+.+
T Consensus        28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r  103 (111)
T 1we6_A           28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence            88999998   89999999998 99999999999999999999999999999999999999999999999999875

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.64  E-value=4.4e-16  Score=128.74  Aligned_cols=73  Identities=45%  Similarity=0.642  Sum_probs=70.9

Q ss_pred             eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .|+|+||+++|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|+.+
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr  177 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  177 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence            3999999999999999999999999999999999999999999999999999999999999999999999875

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.63  E-value=3.5e-16  Score=120.91  Aligned_cols=73  Identities=18%  Similarity=0.315  Sum_probs=67.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHH------HhCCC--CCceEEEecCeEcCCCCccccCCCCCCC--EEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFR------EIGQA--PDSQRLVFKRQQLEDDRNLASYKIVNES--IVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gi~--~~~q~L~~~g~~L~d~~tL~~y~I~~~~--~l~l~  282 (286)
                      |.|+||+++|+++++++++++||++||++|++      ++|+|  +++|||+|+|+.|+|+.||++|+|+.|+  ++||+
T Consensus        18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv   97 (125)
T 2gow_A           18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   97 (125)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            88999999999999999999999999999999      78884  8999999999999999999999999776  78888


Q ss_pred             cCC
Q 023198          283 DLG  285 (286)
Q Consensus       283 ~~~  285 (286)
                      .|.
T Consensus        98 ~r~  100 (125)
T 2gow_A           98 ARE  100 (125)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            763

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.63  E-value=1.1e-15  Score=118.73  Aligned_cols=71  Identities=20%  Similarity=0.199  Sum_probs=68.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+. |+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.||.+|+|++|++|+|+.+
T Consensus        33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~  103 (125)
T 1j8c_A           33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (125)
T ss_dssp             EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence            88999998 899999999999999999999999999999999999999999999999999999999999875

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.63  E-value=8e-16  Score=112.70  Aligned_cols=70  Identities=27%  Similarity=0.364  Sum_probs=67.0

Q ss_pred             eEEEEEeecceEEEe-ecCCcCcHHHHHHHHHHHhCCCCCceEEE---ecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIIL-EVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l-~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |+|+||. +|+++.+ ++++++||++||++|++++|+|+++|+|+   |+|+.|+|+.+|++|+|++|++|+|+-
T Consensus         8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~   81 (90)
T 1v5t_A            8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG   81 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence            7888995 8999999 99999999999999999999999999999   999999999999999999999999974

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=4.7e-16  Score=115.58  Aligned_cols=72  Identities=17%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe--cCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |.++++.++|+++.+++++++||++||++|++++|||+++|+|+|  +|+ |+|+.+|++|+|++|++|||+++.
T Consensus         9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred             eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence            666777789999999999999999999999999999999999996  566 999999999999999999998764

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=8.4e-16  Score=113.89  Aligned_cols=69  Identities=25%  Similarity=0.281  Sum_probs=65.4

Q ss_pred             eEEEEEeecceEE-EeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYI-ILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |+|+|| +.|+++ .+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+-
T Consensus         8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~   77 (96)
T 1wgg_A            8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG   77 (96)
T ss_dssp             EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred             EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence            788999 478999 6999999999999999999999999999999999999999 99999999999999864

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=7.5e-16  Score=115.52  Aligned_cols=72  Identities=22%  Similarity=0.207  Sum_probs=67.2

Q ss_pred             eEEEEEeecc----eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC-CccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNG----RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~-~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+|+..++    +++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ +||.+|+|++|++|+|..+
T Consensus         8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~   84 (102)
T 1v5o_A            8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence            7888988754    7999999999999999999999999999999999999999988 7999999999999999865

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.62  E-value=1.3e-15  Score=115.08  Aligned_cols=71  Identities=21%  Similarity=0.266  Sum_probs=67.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||..+|+ +.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|.+|+|++|++|||+.+
T Consensus        18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   88 (106)
T 1wx7_A           18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK   88 (106)
T ss_dssp             EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence            88999998886 789999999999999999999999999999999999999999999999999999999875

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.62  E-value=1.6e-15  Score=109.89  Aligned_cols=73  Identities=14%  Similarity=0.211  Sum_probs=66.0

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      +.+. ++++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++..
T Consensus        11 ~~~~-~~~~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           11 STIK-LTVKFG-GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             CCEE-EEEEET-TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             CcEE-EEEEEC-CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            3444 455567 899999999999999999999999999999999999999999999999999999999998764

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.60  E-value=5.9e-17  Score=126.59  Aligned_cols=72  Identities=46%  Similarity=0.660  Sum_probs=0.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|+.+
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r   72 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (128)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999865

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.60  E-value=1.2e-15  Score=111.76  Aligned_cols=75  Identities=15%  Similarity=0.291  Sum_probs=70.0

Q ss_pred             CceEEEEEeCCCCcEEEE-EEcCCccHHHHHHHHHhhhCCCCccEEEE---ECCEEeeccccccccccCCCCeEEEEeec
Q 023198           60 GVMKLYFKTPSNEKTFEL-KANRSDTIENIKFIIEVREGIPVHEYDIY---YGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l-~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ..|+|+|++ . |+++++ ++++++||.+||++|++++|+|+++|+|+   |+|+.|+|+.+|++|+|.+|++|+|+...
T Consensus         6 ~~m~i~Vk~-~-g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            6 SGLPIIVKW-G-GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CSCCEEEEE-T-TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             ceEEEEEEE-C-CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence            368999997 5 899999 99999999999999999999999999999   99999999999999999999999998664


Q ss_pred             c
Q 023198          136 K  136 (286)
Q Consensus       136 ~  136 (286)
                      .
T Consensus        84 ~   84 (90)
T 1v5t_A           84 E   84 (90)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.60  E-value=2.7e-15  Score=110.70  Aligned_cols=71  Identities=18%  Similarity=0.154  Sum_probs=63.3

Q ss_pred             eEEEEEeecc--eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec--Ce---Ec-CCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNG--RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK--RQ---QL-EDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~--g~---~L-~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      ++++|+..++  ..+.+++++++||++||++|+.++|+|+++|||+|.  |+   .| +|+++|++|+|++|++|+|++
T Consensus        16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence            6677776655  488999999999999999999999999999999997  45   44 899999999999999999986

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=2e-15  Score=111.80  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=68.5

Q ss_pred             CceEEEEEeCCCCcEE-EEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           60 GVMKLYFKTPSNEKTF-ELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      ..|+|+|++ . |+++ .+++++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|+|.++++|+|+....
T Consensus         6 ~~m~i~Vk~-~-g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~   80 (96)
T 1wgg_A            6 SGYSVTVKW-G-KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             CEEEEEEEE-T-TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred             cEEEEEEEE-C-CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence            368999996 5 8999 6999999999999999999999999999999999999999 99999999999999986654

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.59  E-value=3.3e-15  Score=114.46  Aligned_cols=64  Identities=22%  Similarity=0.396  Sum_probs=61.7

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+.|
T Consensus        44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~r  107 (115)
T 1we7_A           44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALK  107 (115)
T ss_dssp             SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence            5889999999999999999999999999999999999999999999999999999999999865

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.1e-15  Score=113.50  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=68.0

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE--CCEEeeccccccccccCCCCeEEEEeecc
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY--GGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      +|.++++..+ |+++++++++++||++||++|++++||||++|+|+|  .|+ |+|+.+|++|+|++|++++|++..-
T Consensus         8 ~m~~~~vk~~-Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~   83 (100)
T 2dzm_A            8 RMLDFRVEYR-DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL   83 (100)
T ss_dssp             CEEEEEEECS-SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred             ceEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence            5888888888 999999999999999999999999999999999986  566 9999999999999999999987653

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=3.8e-15  Score=110.17  Aligned_cols=74  Identities=20%  Similarity=0.226  Sum_probs=69.7

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc-ccccccccCCCCeEEEEeeccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY-ITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      +.|+|+|++.+ |+.+.++|++++||++||++|++.+   +++|+|+|+|+.|+|+ .+|++|+|.+|++|+++++.+.
T Consensus         6 ~~m~i~Vk~~~-g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            6 SGINVRLKFLN-DTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            46999999999 9999999999999999999999988   8999999999999999 9999999999999999988654

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=3.3e-15  Score=110.48  Aligned_cols=69  Identities=25%  Similarity=0.358  Sum_probs=66.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC-CccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~-~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||+++|+.+.+++++++||++||++|++++   +++|||+|+|+.|+|+ .+|.+|+|++|++|||+.+
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~   77 (95)
T 1wia_A            8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS   77 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence            8899999999999999999999999999999998   9999999999999999 9999999999999999876

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.3e-15  Score=110.98  Aligned_cols=71  Identities=17%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             eEEEEEeecceEE--Ee-ecCCcCcHHHHHHHHHHH-hCCCCCceEEEec--CeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYI--IL-EVAKFDTVRDVKDKLFRE-IGQAPDSQRLVFK--RQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~--~l-~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~~--g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |+|+|++++|+.+  .+ ++++++||++||++|++. .|+|+++|||+|.  |+.|+|+.||++|+|++|++|++-+
T Consensus        11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~KD   87 (88)
T 2dzj_A           11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRD   87 (88)
T ss_dssp             EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEECC
T ss_pred             EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence            8999999998775  58 999999999999999994 8999999999976  9999999999999999999999865

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.59  E-value=1.1e-16  Score=128.23  Aligned_cols=72  Identities=46%  Similarity=0.660  Sum_probs=0.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+|++++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|+.|
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr   72 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence            678999999999999999999999999999999999999999999999999999999999999999999875

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=3.2e-15  Score=113.06  Aligned_cols=73  Identities=21%  Similarity=0.235  Sum_probs=67.5

Q ss_pred             eEEEEEeecc---eEEEeecC--------C-cCcHHHHHHHHHHHh--CCCCCc-eEEEecCeEcCCCCccccCCCCCCC
Q 023198          213 HSIFVKLLNG---RYIILEVA--------K-FDTVRDVKDKLFREI--GQAPDS-QRLVFKRQQLEDDRNLASYKIVNES  277 (286)
Q Consensus       213 ~~i~vk~~~g---~~~~l~v~--------~-~~tV~~lK~~I~~~~--gi~~~~-q~L~~~g~~L~d~~tL~~y~I~~~~  277 (286)
                      |.|+||+.++   +++.++++        + ++||++||++|++++  |+|+++ |+|+|+|+.|+|+.+|.+|+|++|+
T Consensus        13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~   92 (107)
T 1x1m_A           13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS   92 (107)
T ss_dssp             CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred             eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence            7899999888   88999854        4 499999999999999  999999 9999999999999999999999999


Q ss_pred             EEEEEcCC
Q 023198          278 IVNLTDLG  285 (286)
Q Consensus       278 ~l~l~~~~  285 (286)
                      +|||+.+.
T Consensus        93 ~i~lv~~~  100 (107)
T 1x1m_A           93 TVHVLRKS  100 (107)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEeCC
Confidence            99998763

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.1e-15  Score=112.66  Aligned_cols=72  Identities=14%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             eEEEEE-eecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVK-LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk-~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+ ...|+.+.++++++.||.+||+.++...++|+++|+|+|+|+.|+|+.||.+|||++|.||||+.+
T Consensus        16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~   88 (118)
T 2daf_A           16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF   88 (118)
T ss_dssp             EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred             EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence            566666 556889999999999999999999999999999999999999999999999999999999999865

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.58  E-value=1.5e-16  Score=130.80  Aligned_cols=72  Identities=13%  Similarity=0.079  Sum_probs=0.4

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ  139 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~  139 (286)
                      |+|+|++++ |++++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|+     ++|+|+|+++++||.
T Consensus         1 MqI~VKtL~-GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~   72 (189)
T 2xzm_9            1 MQVQVKTLE-GETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK   72 (189)
T ss_dssp             -----------------------------------------------------------------------------C
T ss_pred             CEEEEEcCC-CCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence            789999999 999999999999999999999999999999999999999999999999     899999999999873

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.57  E-value=2.7e-15  Score=108.72  Aligned_cols=66  Identities=18%  Similarity=0.354  Sum_probs=60.6

Q ss_pred             eecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe-------cCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          219 LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF-------KRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       219 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-------~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ..+++.+..++++++||++||++|+.++|+|+++|||+|       .|+.|+|+++|++|+|++|++|||+++
T Consensus        11 ~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A           11 ASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             TCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            345567789999999999999999999999999999996       589999999999999999999999975

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=4.2e-15  Score=112.38  Aligned_cols=77  Identities=21%  Similarity=0.232  Sum_probs=70.2

Q ss_pred             CCceEEEEEeCCCC---cEEEEEEc--------C-CccHHHHHHHHHhhh--CCCCcc-EEEEECCEEeecccccccccc
Q 023198           59 SGVMKLYFKTPSNE---KTFELKAN--------R-SDTIENIKFIIEVRE--GIPVHE-YDIYYGGKLIESYITLDVLNI  123 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g---~~~~l~v~--------~-~~tV~~lK~~I~~~~--gip~~~-q~L~~~g~~L~D~~tL~~~~I  123 (286)
                      ...|+|+||+.+ |   +++.+++.        + ++||++||++|++++  |+|+++ |+|+|+|+.|+|+.+|++|+|
T Consensus        10 ~~~~~i~Vk~~~-~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i   88 (107)
T 1x1m_A           10 LSDWHLAVKLAD-QPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGI   88 (107)
T ss_dssp             CCSCCEEEEETT-CTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTC
T ss_pred             CCceEEEEEeCC-CCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCC
Confidence            346899999998 8   79999954        4 499999999999999  999999 999999999999999999999


Q ss_pred             CCCCeEEEEeecc
Q 023198          124 NNEDTLQMISVPK  136 (286)
Q Consensus       124 ~~~s~i~l~~~~~  136 (286)
                      .++++|+|+.+..
T Consensus        89 ~~g~~i~lv~~~~  101 (107)
T 1x1m_A           89 QPGSTVHVLRKSW  101 (107)
T ss_dssp             CTTCEEEEEESSC
T ss_pred             CCCCEEEEEeCCC
Confidence            9999999998764

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.57  E-value=1.2e-14  Score=107.21  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             CCceEEEEEeCCCC--cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC--CE---Ee-eccccccccccCCCCeEE
Q 023198           59 SGVMKLYFKTPSNE--KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG--GK---LI-ESYITLDVLNINNEDTLQ  130 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~---~L-~D~~tL~~~~I~~~s~i~  130 (286)
                      .+.+.|+|+... +  +.+++++++++||++||++|+.++|+|+++|||+|.  |+   +| +|+++|++|+|++|++|+
T Consensus        13 ~~~v~l~It~s~-~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih   91 (95)
T 2kjr_A           13 SDFIKVNVSNSH-NDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH   91 (95)
T ss_dssp             CCEEEEEEEESS-CSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred             CCeEEEEEEECC-CCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence            456788888765 4  489999999999999999999999999999999997  55   55 899999999999999999


Q ss_pred             EE
Q 023198          131 MI  132 (286)
Q Consensus       131 l~  132 (286)
                      ++
T Consensus        92 lv   93 (95)
T 2kjr_A           92 VV   93 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=2.9e-15  Score=110.78  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=65.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+|| ++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+ +.+|.+|+|++|++|+|+..
T Consensus        18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence            788888 57899999999999999999999999999999999999999994 55999999999999999764

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.57  E-value=8.9e-15  Score=107.49  Aligned_cols=71  Identities=23%  Similarity=0.267  Sum_probs=65.9

Q ss_pred             eEEEEEeecceEEEeecCCc-----CcHHHHHHHHHHHhCCCCCceEEEecCeEcCC-CCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKF-----DTVRDVKDKLFREIGQAPDSQRLVFKRQQLED-DRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~-----~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d-~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+|+. .|+.+.++++++     +||++||++|++++|+|+++|+|+|+|+.|+| +.+|.+|+|++|++|+|+.+
T Consensus         8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            7888997 588899999995     99999999999999999999999999999998 66899999999999999865

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=2.8e-15  Score=109.17  Aligned_cols=70  Identities=17%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             ceEEEEEeCCCCcEE--EE-EEcCCccHHHHHHHHHh-hhCCCCccEEEEEC--CEEeeccccccccccCCCCeEEE
Q 023198           61 VMKLYFKTPSNEKTF--EL-KANRSDTIENIKFIIEV-REGIPVHEYDIYYG--GKLIESYITLDVLNINNEDTLQM  131 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~--~l-~v~~~~tV~~lK~~I~~-~~gip~~~q~L~~~--g~~L~D~~tL~~~~I~~~s~i~l  131 (286)
                      .|+|+|+++. |+.+  ++ +|+|++||++||++|++ +.|+||++|||+|.  |+.|+|+.+|++|+|.++++|++
T Consensus        10 ~M~I~Vk~~~-g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAK-TREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESS-SCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCC-CCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            4899999998 7775  58 99999999999999999 48999999999977  99999999999999999998765

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.55  E-value=1.5e-14  Score=106.33  Aligned_cols=75  Identities=15%  Similarity=0.290  Sum_probs=68.5

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCC-----ccHHHHHHHHHhhhCCCCccEEEEECCEEeec-cccccccccCCCCeEEEEe
Q 023198           60 GVMKLYFKTPSNEKTFELKANRS-----DTIENIKFIIEVREGIPVHEYDIYYGGKLIES-YITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~-----~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D-~~tL~~~~I~~~s~i~l~~  133 (286)
                      ..|+|+|++ . |+.+.+++.++     +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|.++++|+|+.
T Consensus         6 ~~~~v~Vk~-~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~   83 (92)
T 1wxv_A            6 SGLTVTVTH-S-NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG   83 (92)
T ss_dssp             SSEEEEEEC-S-SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred             CeEEEEEEE-C-CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence            468999998 5 78999999995     99999999999999999999999999999998 6689999999999999987


Q ss_pred             ecc
Q 023198          134 VPK  136 (286)
Q Consensus       134 ~~~  136 (286)
                      +..
T Consensus        84 ~~~   86 (92)
T 1wxv_A           84 KKN   86 (92)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            654

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2e-14  Score=108.28  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             ceEEEEE-eCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           61 VMKLYFK-TPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        61 ~~~i~Vk-~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .+.|.|+ .+. |+.+.+++.++.||.+||+.++...++|+++|+|+|+|+.|.|+.||++|||++|.++||+.+...+
T Consensus        15 ~itvkv~l~~~-~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p   92 (118)
T 2daf_A           15 LATVKVVLIPV-GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP   92 (118)
T ss_dssp             CEEEEEEETTT-CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred             cEEEEEEEcCC-CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence            4666776 555 8899999999999999999999999999999999999999999999999999999999999887554

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.54  E-value=1.7e-14  Score=127.57  Aligned_cols=77  Identities=38%  Similarity=0.559  Sum_probs=72.2

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      ++.|+|+|++++ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++
T Consensus       231 ~~~MqI~VKtl~-Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          231 TGSMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             CCCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred             CCeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            578999999999 99999999999999999999999999999999999999999999999999999999999998763

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.54  E-value=9.6e-15  Score=108.06  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=62.9

Q ss_pred             eEEEEEeecc--eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe---E----cCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNG--RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ---Q----LEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~---~----L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      +.++|+..+.  ..+.+++++++||++||++|+.++|+|+++|||+|.|+   .    ++|+++|.+|+|++|++|+|++
T Consensus        15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd   94 (97)
T 2kj6_A           15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID   94 (97)
T ss_dssp             EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence            4566665444  47899999999999999999999999999999999883   3    5899999999999999999987


Q ss_pred             C
Q 023198          284 L  284 (286)
Q Consensus       284 ~  284 (286)
                      .
T Consensus        95 ~   95 (97)
T 2kj6_A           95 L   95 (97)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.53  E-value=1.4e-14  Score=104.88  Aligned_cols=63  Identities=16%  Similarity=0.110  Sum_probs=58.7

Q ss_pred             CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE-------CCEEeeccccccccccCCCCeEEEEee
Q 023198           72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY-------GGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-------~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      ++.+...+++++||++||++|+.++|+||++|||+|       .|+.|+|+++|++|||++|++|||+-+
T Consensus        14 ~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A           14 MRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             CCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            667789999999999999999999999999999996       588899999999999999999999854

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=3.1e-14  Score=105.27  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=63.6

Q ss_pred             eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC---eE----cCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR---QQ----LEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g---~~----L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.+.|+..... .+.+++++++||++||++|+.++|+|+++|||+|.|   +.    ++|+++|.+|||++|++||+.+.
T Consensus         8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~   87 (95)
T 1v6e_A            8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence            56677765442 688999999999999999999999999999999986   43    58999999999999999999875


Q ss_pred             C
Q 023198          285 G  285 (286)
Q Consensus       285 ~  285 (286)
                      +
T Consensus        88 ~   88 (95)
T 1v6e_A           88 S   88 (95)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.51  E-value=9.8e-14  Score=122.66  Aligned_cols=72  Identities=46%  Similarity=0.657  Sum_probs=69.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+.|
T Consensus       234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR  305 (307)
T 3ai5_A          234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  305 (307)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999876

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.50  E-value=4.5e-14  Score=104.45  Aligned_cols=74  Identities=11%  Similarity=0.084  Sum_probs=63.6

Q ss_pred             CceEEEEEeCC-CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC---EE----eeccccccccccCCCCeEEE
Q 023198           60 GVMKLYFKTPS-NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG---KL----IESYITLDVLNINNEDTLQM  131 (286)
Q Consensus        60 ~~~~i~Vk~~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~~----L~D~~tL~~~~I~~~s~i~l  131 (286)
                      +.+.++|.... .++.+.+++++++||++||++|+.++|+||++|||+|.|   +.    ++|+++|++|+|++|++|++
T Consensus        13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl   92 (97)
T 2kj6_A           13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI   92 (97)
T ss_dssp             CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred             ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence            35677777644 135799999999999999999999999999999999988   33    49999999999999999998


Q ss_pred             Ee
Q 023198          132 IS  133 (286)
Q Consensus       132 ~~  133 (286)
                      +-
T Consensus        93 vd   94 (97)
T 2kj6_A           93 ID   94 (97)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.50  E-value=1.2e-14  Score=107.48  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=66.4

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ..|+|+|+. . |+++.+++++++||++||++|++++|+|+++|+|+|.|+.|+ +.+|++|+|.++++|+|+.+.
T Consensus        16 ~~~~i~Vk~-~-g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           16 ELVDLKIIW-N-KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCEEEEEEE-T-TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred             ceEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence            368899985 5 899999999999999999999999999999999999999994 459999999999999987654

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.47  E-value=1.3e-13  Score=106.57  Aligned_cols=73  Identities=15%  Similarity=0.146  Sum_probs=63.7

Q ss_pred             eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC---e---E-cCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR---Q---Q-LEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g---~---~-L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.+.|+..++. .+.+++++++||++||++|+.++|+|+++|||+|.|   +   . ++|+++|.+|||++|++||+++.
T Consensus         7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~   86 (122)
T 1t0y_A            7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   86 (122)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence            56777765443 688999999999999999999999999999999987   3   2 48999999999999999999975


Q ss_pred             C
Q 023198          285 G  285 (286)
Q Consensus       285 ~  285 (286)
                      +
T Consensus        87 ~   87 (122)
T 1t0y_A           87 T   87 (122)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.47  E-value=2.3e-13  Score=100.13  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=75.2

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|+|+|+..+ |+.+.++|.+++++..|+++++++.|+|++++|++|+|++|+++.|+++|++.+|++|++++++.||
T Consensus         6 ~~i~ikVk~~~-g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG   83 (94)
T 2io1_B            6 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   83 (94)
T ss_dssp             CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred             CeEEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            46899999999 9999999999999999999999999999999999999999999999999999999999999999887

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.47  E-value=5.4e-14  Score=127.69  Aligned_cols=78  Identities=22%  Similarity=0.435  Sum_probs=72.4

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHh---hhCCCCccEEEEECCEEeeccccccccccCCCCeE-EEEeec
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEV---REGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL-QMISVP  135 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~---~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i-~l~~~~  135 (286)
                      +.|+|+||+++ |+++.++|++++||.+||++|++   ++|+|+++|||+|+|+.|+|+++|++|+|.++++| +++.++
T Consensus         6 ~~M~I~VKtl~-Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~   84 (368)
T 1oqy_A            6 SAVTITLKTLQ-QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT   84 (368)
T ss_dssp             CCCCEEEEETT-TEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred             ceEEEEEEeCC-CCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence            46999999999 99999999999999999999999   67899999999999999999999999999999998 777777


Q ss_pred             ccc
Q 023198          136 KEL  138 (286)
Q Consensus       136 ~~~  138 (286)
                      +++
T Consensus        85 ~~~   87 (368)
T 1oqy_A           85 KAG   87 (368)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            653

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.47  E-value=4.1e-15  Score=122.21  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=0.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+|++++|++++++|++++||++||.+|++++|||+++|+|+|+|++|+|+.||+     ++|||||+.|
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR   67 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK   67 (189)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence            689999999999999999999999999999999999999999999999999999999     8999999865

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.46  E-value=5.7e-14  Score=106.08  Aligned_cols=71  Identities=18%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             eEEEEEeecceEEEeecC-CcCcHHHHHHHHHHHhCCCCCceEEEecCe-----------E----cCCCCccccCCCCCC
Q 023198          213 HSIFVKLLNGRYIILEVA-KFDTVRDVKDKLFREIGQAPDSQRLVFKRQ-----------Q----LEDDRNLASYKIVNE  276 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~-----------~----L~d~~tL~~y~I~~~  276 (286)
                      |.|+||+++|+. .++++ +++||.+||++|++++|+|+++|+|+|.|+           .    ++|+.||.+|||++|
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G   86 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   86 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence            789999999976 78999 999999999999999999999999999888           4    589999999999999


Q ss_pred             CEEEEEcC
Q 023198          277 SIVNLTDL  284 (286)
Q Consensus       277 ~~l~l~~~  284 (286)
                      ++|||...
T Consensus        87 ~~L~l~~~   94 (107)
T 1wf9_A           87 SMVYLAYE   94 (107)
T ss_dssp             CEEECCCS
T ss_pred             CEEEEEeC
Confidence            99999764

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.43  E-value=1.4e-13  Score=125.03  Aligned_cols=72  Identities=21%  Similarity=0.299  Sum_probs=67.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHH---HhCCCCCceEEEecCeEcCCCCccccCCCCCCCEE-EEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFR---EIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIV-NLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~---~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l-~l~~~  284 (286)
                      |.|+||+++|+++.++|.+++||.+||++|++   ++|+|+++|||+|+|+.|+|+++|.+|+|++|++| +|+.+
T Consensus         8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k   83 (368)
T 1oqy_A            8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   83 (368)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence            88999999999999999999999999999999   67899999999999999999999999999999998 66654

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.41  E-value=4.1e-13  Score=99.18  Aligned_cols=72  Identities=18%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             ceEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC---EE----eeccccccccccCCCCeEEEE
Q 023198           61 VMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG---KL----IESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        61 ~~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~~----L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      .+.|+|+... .. .+.+++.+++||++||++|+.++|+|+++|||+|.|   +.    ++|+.+|++|+|.+|++|+++
T Consensus         7 ~v~l~I~~~~-~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~   85 (95)
T 1v6e_A            7 GVMVFISSSL-NSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CEEEEEEETT-SSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             EEEEEEEECC-CCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence            3677787755 32 688999999999999999999999999999999986   43    589999999999999999986


Q ss_pred             e
Q 023198          133 S  133 (286)
Q Consensus       133 ~  133 (286)
                      .
T Consensus        86 d   86 (95)
T 1v6e_A           86 D   86 (95)
T ss_dssp             C
T ss_pred             E
Confidence            4

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=8.3e-13  Score=97.09  Aligned_cols=72  Identities=11%  Similarity=0.220  Sum_probs=69.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|.|++.+|+.+.+.|.+++++..|++.++++.|+|++++||+|.|+.|.++.|.++|++++|++|+++.+
T Consensus         8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~   79 (94)
T 2io1_B            8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   79 (94)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            889999999999999999999999999999999999999999999999999999999999999999999864

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.41  E-value=3.6e-13  Score=97.58  Aligned_cols=71  Identities=20%  Similarity=0.317  Sum_probs=63.5

Q ss_pred             eEEEEEeecceEEEee-cCCcCcHHHHHHHHHHHhCCCCCceEEEec--CeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFK--RQQLE---DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~--g~~L~---d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|.||+.+|+.. +. +++++||++||++|++++|+|+++|+|+|+  ++.|.   |+.+|++|||++|++|++...
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            5789999999765 77 999999999999999999999999999986  47874   789999999999999998754

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.40  E-value=1e-12  Score=101.53  Aligned_cols=73  Identities=18%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             ceEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC---E---E-eeccccccccccCCCCeEEEE
Q 023198           61 VMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG---K---L-IESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        61 ~~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~---~-L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      .+.|+|+... +. .+.+++.+++||++||++|+.++|+|+++|||+|.|   +   + ++|+.+|++|||.+|++|+++
T Consensus         6 ~v~l~V~~~~-~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv   84 (122)
T 1t0y_A            6 VYDLEITTNA-TDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   84 (122)
T ss_dssp             EEEEEEEESS-CCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             EEEEEEEECC-CCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence            4677887755 43 688999999999999999999999999999999977   4   3 489999999999999999998


Q ss_pred             ee
Q 023198          133 SV  134 (286)
Q Consensus       133 ~~  134 (286)
                      ..
T Consensus        85 d~   86 (122)
T 1t0y_A           85 DV   86 (122)
T ss_dssp             EC
T ss_pred             eC
Confidence            64

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.39  E-value=1.8e-13  Score=103.34  Aligned_cols=73  Identities=12%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             ceEEEEEeCCCCcEEEEEEc-CCccHHHHHHHHHhhhCCCCccEEEEECCE-----------E----eeccccccccccC
Q 023198           61 VMKLYFKTPSNEKTFELKAN-RSDTIENIKFIIEVREGIPVHEYDIYYGGK-----------L----IESYITLDVLNIN  124 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-----------~----L~D~~tL~~~~I~  124 (286)
                      .|.|+||+.+ |+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+           +    ++|+.+|++|+|.
T Consensus         7 ~M~irvrs~~-G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~   84 (107)
T 1wf9_A            7 GTMLRVRSRD-GLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA   84 (107)
T ss_dssp             CEEEEEECSS-CEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred             eEEEEEECCC-CCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence            5899999998 866 79999 999999999999999999999999999888           4    5899999999999


Q ss_pred             CCCeEEEEeec
Q 023198          125 NEDTLQMISVP  135 (286)
Q Consensus       125 ~~s~i~l~~~~  135 (286)
                      +|++|+|....
T Consensus        85 ~G~~L~l~~~~   95 (107)
T 1wf9_A           85 HGSMVYLAYEG   95 (107)
T ss_dssp             TTCEEECCCSS
T ss_pred             CCCEEEEEeCC
Confidence            99999987553

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=2.5e-12  Score=93.91  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=74.8

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|.|.|+..+ |+.+.+.|.+++++..|++.+.++.|+|++++|++|+|++|.++.|.++|++.+|++|++++...||
T Consensus         4 ~~i~ikVk~~~-g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg   81 (91)
T 2io0_B            4 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   81 (91)
T ss_dssp             CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred             CeEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            46889999998 9999999999999999999999999999999999999999999999999999999999999998887

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.36  E-value=8.6e-13  Score=118.05  Aligned_cols=70  Identities=19%  Similarity=0.390  Sum_probs=64.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE---ecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      ++|.|| ++|+++.+++++++||++||++|++++|+|+++|+|+   |+|+.|+|+.+|++|+|++|++|+|+-
T Consensus         6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g   78 (320)
T 3shq_A            6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG   78 (320)
T ss_dssp             EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence            678888 4899999999999999999999999999999999999   899999999999999999999999873

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.36  E-value=3.7e-12  Score=89.03  Aligned_cols=70  Identities=11%  Similarity=0.230  Sum_probs=67.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +++.|+..+|+.+.+.|.++++++.|++..+++.|+|++++||+|.|+.|.++.|.++|++++|++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            5788999999999999999999999999999999999999999999999999999999999999999985

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.33  E-value=8.8e-12  Score=91.45  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=71.9

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|.|.|+..+ |+.+.+.|.+++++..|++.+.++.|+|++++|++|+|++|.++.|.++|++.+|++|++++++.||
T Consensus        16 ~~i~ikV~~~~-g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           16 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             CEEEEEEECTT-SCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEECCC-CCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence            36788999988 9999999999999999999999999999999999999999999999999999999999999988765

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.31  E-value=7.5e-12  Score=91.31  Aligned_cols=72  Identities=11%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|++.+|+.+.+.|.+++++..|++..+++.|+|++++||+|.|+.|.++.|.++|++++|++|++...
T Consensus         6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~   77 (91)
T 2io0_B            6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   77 (91)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            788999999999999999999999999999999999999999999999999999999999999999999864

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.30  E-value=1.6e-12  Score=94.12  Aligned_cols=71  Identities=20%  Similarity=0.222  Sum_probs=62.7

Q ss_pred             eEEEEEeCCCCcEEEEE-EcCCccHHHHHHHHHhhhCCCCccEEEEEC--CEEee---ccccccccccCCCCeEEEEee
Q 023198           62 MKLYFKTPSNEKTFELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYG--GKLIE---SYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~---D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      |+|.|++.+ |+.. ++ +++++||++||++|++++|+|+++|+|+|+  ++.|+   |+.+|++|||.+|++|++...
T Consensus         1 m~i~vr~~~-G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKG-GTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETT-EEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCC-CCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            679999999 8654 77 999999999999999999999999999987  47774   788999999999999887644

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.29  E-value=1.4e-11  Score=86.14  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      |.|.|+..+ |+.+.+.|.+++++..|++.+.++.|+|+++++++|+|++|.++.|.++|++.+|++|++.
T Consensus         2 i~lkV~~~~-g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTT-SCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            688999988 9999999999999999999999999999999999999999999999999999999999875

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.28  E-value=3.8e-12  Score=113.87  Aligned_cols=77  Identities=17%  Similarity=0.247  Sum_probs=68.0

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE---ECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY---YGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      ..+.|.||. + |+++++++++++||++||++|++++||||++|+|+   |+|+.|+|+.+|++|+|++|++++|+....
T Consensus         4 ~~i~i~Vk~-~-g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~   81 (320)
T 3shq_A            4 KEVVVIVKW-S-GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE   81 (320)
T ss_dssp             CEEEEEEEE-T-TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred             ceEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence            357889996 5 89999999999999999999999999999999999   899999999999999999999999987765


Q ss_pred             cc
Q 023198          137 EL  138 (286)
Q Consensus       137 ~~  138 (286)
                      ..
T Consensus        82 ~~   83 (320)
T 3shq_A           82 AD   83 (320)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.28  E-value=1.6e-11  Score=87.33  Aligned_cols=70  Identities=7%  Similarity=0.104  Sum_probs=67.3

Q ss_pred             eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      ++|.|+..+|+ .+.+.|.+++++..|++..+++.|++++++||+|.|+.|.++.|..+|++++|++|++.
T Consensus         8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            78899999995 89999999999999999999999999999999999999999999999999999999985

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.27  E-value=2.2e-11  Score=91.10  Aligned_cols=77  Identities=13%  Similarity=0.190  Sum_probs=71.4

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|.|.|+. + |+.+.+.|.+++++..|++.+.++.|++++++|++|+|++|.++.|.++|++.+|++|++++++.||
T Consensus        30 ~~I~IkV~~-~-g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           30 THINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             SEEEEEEEC-S-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEec-C-CcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            468999999 8 9999999999999999999999999999999999999999999999999999999999999988765

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.26  E-value=2.3e-11  Score=89.24  Aligned_cols=72  Identities=11%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+..+|+.+.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+|++.+|++|++...
T Consensus        18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~   89 (93)
T 2d07_B           18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   89 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence            788899999999999999999999999999999999999999999999999999999999999999999864

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.24  E-value=1.2e-11  Score=92.38  Aligned_cols=78  Identities=15%  Similarity=0.248  Sum_probs=74.5

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|.|.|+..+ |+.+.+.|.+++++..|+..+.++.|+|++++|++|+|++|.++.|.++|++.++++|++++++.||
T Consensus        23 ~~I~IkVk~~~-g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG  100 (104)
T 1wz0_A           23 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG  100 (104)
T ss_dssp             CCEEEEEECSS-SCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred             CeEEEEEECCC-CCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            46889999998 9999999999999999999999999999999999999999999999999999999999999988876

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.23  E-value=1.2e-11  Score=93.17  Aligned_cols=79  Identities=9%  Similarity=0.172  Sum_probs=75.0

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ  139 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~  139 (286)
                      ..|.|.|+..+ |+.+.+.|.+++++..|++.+.++.|+|++++|++|+|++|.++.|.++|++.+|++|++++...||+
T Consensus        25 ~~I~IkVk~~~-g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~  103 (110)
T 2k8h_A           25 ALVAVKVVNAD-GAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL  103 (110)
T ss_dssp             CCEEEEEEETT-SCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred             CeEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence            46889999998 99999999999999999999999999999999999999999999999999999999999999988874

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.23  E-value=5.5e-11  Score=84.51  Aligned_cols=72  Identities=11%  Similarity=0.228  Sum_probs=68.3

Q ss_pred             CceEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      ..|.|.|+..+ |+ .+.+.|.+++++..|++.+.++.|+|++++|++|+|++|.++.|.++|++.+|++|++.
T Consensus         6 ~~i~ikV~~~~-g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            6 QELRLRVQGKE-KHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCEEEEEECSS-TTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CEEEEEEEeCC-CCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            46889999998 86 89999999999999999999999999999999999999999999999999999999874

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.22  E-value=2.8e-11  Score=90.42  Aligned_cols=72  Identities=11%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+..+|+.+.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+|++++|++|++...
T Consensus        25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~   96 (104)
T 1wz0_A           25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   96 (104)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            788899999999999999999999999999999999999999999999999999999999999999999764

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.18  E-value=7.5e-11  Score=88.18  Aligned_cols=71  Identities=14%  Similarity=0.275  Sum_probs=68.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+. +|+.+.+.|.+++++..|++..+++.|++++++||+|.|+.|.++.|..+|++++|++|++...
T Consensus        32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~  102 (106)
T 2eke_C           32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE  102 (106)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence            7889999 9999999999999999999999999999999999999999999999999999999999998764

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.16  E-value=3.7e-11  Score=90.50  Aligned_cols=72  Identities=10%  Similarity=0.263  Sum_probs=69.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+..+|+.+.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+|++++|++|++...
T Consensus        27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~   98 (110)
T 2k8h_A           27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE   98 (110)
T ss_dssp             EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            788899999999999999999999999999999999999999999999999999999999999999999864

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.12  E-value=2.1e-10  Score=84.83  Aligned_cols=72  Identities=18%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             eEEEEEe---ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC-------eEc-CCCCccccCCCCCCCEEEE
Q 023198          213 HSIFVKL---LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR-------QQL-EDDRNLASYKIVNESIVNL  281 (286)
Q Consensus       213 ~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g-------~~L-~d~~tL~~y~I~~~~~l~l  281 (286)
                      +.+.|+.   .+|+.+...++++.||++||.+|+..+|+|+..|+|.|.+       ..| +|..+|.+|+|.+|++||+
T Consensus        10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V   89 (97)
T 1wjn_A           10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence            4455554   4678889999999999999999999999999999998862       235 6888999999999999999


Q ss_pred             EcC
Q 023198          282 TDL  284 (286)
Q Consensus       282 ~~~  284 (286)
                      .+.
T Consensus        90 ~d~   92 (97)
T 1wjn_A           90 RWS   92 (97)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            873

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.01  E-value=1.5e-09  Score=80.19  Aligned_cols=74  Identities=19%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             ceEEEEEeC--CCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC------E-Ee-eccccccccccCCCCeEE
Q 023198           61 VMKLYFKTP--SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG------K-LI-ESYITLDVLNINNEDTLQ  130 (286)
Q Consensus        61 ~~~i~Vk~~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g------~-~L-~D~~tL~~~~I~~~s~i~  130 (286)
                      .+.|+|+..  .+|+.+...+.++.||++||.+|+..+|+|+..|+|+|.+      . .| +|..+|++|++.+|++|+
T Consensus         9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~   88 (97)
T 1wjn_A            9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL   88 (97)
T ss_dssp             EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred             cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence            456667653  2288999999999999999999999999999999998762      2 24 678899999999999999


Q ss_pred             EEee
Q 023198          131 MISV  134 (286)
Q Consensus       131 l~~~  134 (286)
                      +...
T Consensus        89 V~d~   92 (97)
T 1wjn_A           89 VRWS   92 (97)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            8764

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.88  E-value=9.7e-09  Score=77.51  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=68.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+..+|+.+.+.|.+++++..|+...+++.|+++.++||+|.|+.|.++.|..++++.+|++|.+...
T Consensus        41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~  112 (115)
T 3kyd_D           41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE  112 (115)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence            788888889999999999999999999999999999999999999999999999999999999999998764

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.83  E-value=3.7e-08  Score=81.62  Aligned_cols=87  Identities=11%  Similarity=0.163  Sum_probs=76.2

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc-
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL-  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~-  138 (286)
                      ..+.|.|+ .+ |+.+.+.+.+++++..|+....++.|+|+.++|++|+|++|.++.|.+++++.+|++|+++....|| 
T Consensus        28 ~~I~LkV~-~~-g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~  105 (200)
T 3pge_A           28 THINLKVS-DG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG  105 (200)
T ss_dssp             CCEEEEEE-CS-SCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred             CeEEEEEe-cC-CCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence            35778886 46 9999999999999999999999999999999999999999999999999999999999999998775 


Q ss_pred             ---eeEEeecCCC
Q 023198          139 ---QEIFVQTPTS  148 (286)
Q Consensus       139 ---~~I~V~~~~g  148 (286)
                         +.+..+...|
T Consensus       106 kd~v~Fs~~GD~G  118 (200)
T 3pge_A          106 GETIKFVADGDIG  118 (200)
T ss_dssp             -CCEEEEEECSSC
T ss_pred             CceEEEEeeccCC
Confidence               4444443334

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.82  E-value=3.3e-08  Score=74.56  Aligned_cols=75  Identities=17%  Similarity=0.303  Sum_probs=70.3

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ..+.|.|+..+ |+.+.+.|.+++++..|+....++.|+|++++|++|+|++|.++.|.+++++.+|++|.++...
T Consensus        39 ~~I~LKV~~qd-g~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           39 EYIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred             CeEEEEEEcCC-CCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence            46788998888 9999999999999999999999999999999999999999999999999999999999988654

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.68  E-value=6.4e-08  Score=80.15  Aligned_cols=71  Identities=14%  Similarity=0.275  Sum_probs=66.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +++.|+. +|+.+.+.|.+++++..|+...+++.|+++.++||+|.|+.|.++.|..++++.+|++|++...
T Consensus        30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~  100 (200)
T 3pge_A           30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE  100 (200)
T ss_dssp             EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence            6777874 8999999999999999999999999999999999999999999999999999999999998764

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.60  E-value=1e-07  Score=77.54  Aligned_cols=77  Identities=13%  Similarity=0.183  Sum_probs=72.1

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ  139 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~  139 (286)
                      .+.|.|+ .+ |+.+.+.|.+++++..|++...++.|+|+.+++++|+|++|.++.|.+++++.+|++|+++....||.
T Consensus        57 ~InLKVk-~d-G~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           57 HINLKVS-DG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             EEEEEEE-CS-SCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             cEEEEEe-cC-CCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            5777886 46 99999999999999999999999999999999999999999999999999999999999999988873

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.56  E-value=1.4e-07  Score=76.78  Aligned_cols=71  Identities=13%  Similarity=0.253  Sum_probs=66.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+. +|+.+.+.|.+++++..|++..+++.|+++.+++|+|.|+.|.++.|..++++.+|++|++...
T Consensus        58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le  128 (207)
T 3tix_A           58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE  128 (207)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC
T ss_pred             EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence            6777774 8999999999999999999999999999999999999999999999999999999999998753

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.54  E-value=6.6e-08  Score=68.58  Aligned_cols=70  Identities=19%  Similarity=0.206  Sum_probs=58.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeE-----cCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ-----LEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~-----L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |.+.++..+| ++.+++++++|+.+|+++|++.++++++.|.+.++..+     +.++.+|++.||+.|++|++..
T Consensus         5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~~   79 (80)
T 2pjh_A            5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFP   79 (80)
T ss_dssp             CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC--
T ss_pred             EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEec
Confidence            5677888887 66789999999999999999999999999888765554     3478899999999999999753

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.46  E-value=1e-06  Score=63.86  Aligned_cols=57  Identities=9%  Similarity=0.084  Sum_probs=47.8

Q ss_pred             eCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEe--eccccccccccC
Q 023198           68 TPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLI--ESYITLDVLNIN  124 (286)
Q Consensus        68 ~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L--~D~~tL~~~~I~  124 (286)
                      .+..+..+.+.+.+.+||..+|++|++++|||+.+|+|+|.|+.|  +.....+.|.-.
T Consensus        19 ~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~T   77 (94)
T 4efo_A           19 SLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKT   77 (94)
T ss_dssp             ETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCC
T ss_pred             EcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCC
Confidence            333389999999999999999999999999999999999999875  556666666543

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.41  E-value=2.8e-06  Score=58.55  Aligned_cols=71  Identities=17%  Similarity=0.223  Sum_probs=63.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCC-ceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPD-SQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      +++..+......+.+.+.++.+|..|-+.-+.+.|||++ ..+|.|.|..|+.+.++.+|++.+|+.|.++.
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            344455555667889999999999999999999999999 89999999999999999999999999998874

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.39  E-value=1.2e-06  Score=63.53  Aligned_cols=66  Identities=12%  Similarity=0.218  Sum_probs=51.9

Q ss_pred             eecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcC--CCCccccCCC-CCCCEEEEEcC
Q 023198          219 LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE--DDRNLASYKI-VNESIVNLTDL  284 (286)
Q Consensus       219 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~--d~~tL~~y~I-~~~~~l~l~~~  284 (286)
                      ...+..+.+.+.+++|+..+|++|++++|||+.+|+|+|+|+.|.  .+++-..|-- ...+.|.|..+
T Consensus        20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~   88 (94)
T 4efo_A           20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL   88 (94)
T ss_dssp             TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred             cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence            346788899999999999999999999999999999999998765  4444445543 44556666654

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.34  E-value=5.7e-08  Score=80.07  Aligned_cols=78  Identities=13%  Similarity=0.184  Sum_probs=1.2

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ  139 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~  139 (286)
                      ..|.|.| ..+ |+.+.++|.++++...|++...++.|+|++++|++|+|+++.++.|.+++++.+|++|+++....||.
T Consensus        20 e~InLKV-~qd-GseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~   97 (227)
T 3v7o_A           20 THINLKV-SDG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL   97 (227)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             CeEEEEE-eCC-CCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence            3677888 666 99999999999999999999999999999999999999999999999999999999999999998874

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.32  E-value=6.1e-06  Score=56.89  Aligned_cols=71  Identities=11%  Similarity=0.252  Sum_probs=64.3

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-EYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      +.+.++... ...+.+++.++.+|.++-+....+.|||++ ..+|.|.|..|+.+.++++|++.+++.|.+++
T Consensus        10 ~~~~~~~~~-~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSK-SEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESS-SCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccC-CCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            445666666 778999999999999999999999999999 89999999999999999999999999998764

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.26  E-value=1.1e-07  Score=78.41  Aligned_cols=70  Identities=14%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |++.| ..+|+.+.+.|.+++++..|++..+++.|++++++||+|.|+.+.++.|..++++++|++|++..
T Consensus        22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l   91 (227)
T 3v7o_A           22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR   91 (227)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence            77788 66899999999999999999999999999999999999999999999999999999999999875

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.21  E-value=0.0003  Score=66.96  Aligned_cols=261  Identities=12%  Similarity=0.083  Sum_probs=172.3

Q ss_pred             CCCcchHHHHHHHHhhchhcCCCCCCCeEEec------Ccccc-cCCccccc--CCCCCceeee---e------------
Q 023198            3 VKKTEKIEKLKLRIHAKVEEEILEDLPELFYA------GQQLE-NGLTVIDY--GIPNNSVIHN---D------------   58 (286)
Q Consensus         3 v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~------g~~L~-d~~~l~~y--~i~~~s~l~l---~------------   58 (286)
                      |...++|.++-..|.++  .|+|++....+|.      ...|+ .+.|+.+.  .|.+|..|-.   .            
T Consensus       153 v~~~~kv~~l~~~i~~~--~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~  230 (530)
T 2ylm_A          153 TPISCKIRDLLPVMCDR--AGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAK  230 (530)
T ss_dssp             EETTCBGGGTHHHHHHH--HTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHH
T ss_pred             ECCCCCHHHHHHHHHHH--cCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecCCccccccCCCHH
Confidence            45778999999999999  9999999888886      23477 57899999  9999999876   1            


Q ss_pred             ------CCceEEEEEeC--CCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC----CE---E--eecccccccc
Q 023198           59 ------SGVMKLYFKTP--SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG----GK---L--IESYITLDVL  121 (286)
Q Consensus        59 ------~~~~~i~Vk~~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g~---~--L~D~~tL~~~  121 (286)
                            ...+.|.++..  .+...|.++++...|-.++.++|.+..|++|...|++-.    +.   .  ...+.+|++.
T Consensus       231 ~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~  310 (530)
T 2ylm_A          231 EYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDL  310 (530)
T ss_dssp             HHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHH
T ss_pred             HHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHH
Confidence                  12456666642  226779999999999999999999999999999877522    22   1  1223344332


Q ss_pred             ccC---CC-CeEE-EEeecc-------cceeEEeecCCC---eEEEecCCCccHHhHHHHHHHHhcCCCC---CCeEEE-
Q 023198          122 NIN---NE-DTLQ-MISVPK-------ELQEIFVQTPTS---TVKLEVRRAHTVLDVKKMVESMRICIPS---EDCELF-  182 (286)
Q Consensus       122 ~I~---~~-s~i~-l~~~~~-------~~~~I~V~~~~g---~~~l~v~~~~tV~~lK~~I~~~~~gip~---~~q~L~-  182 (286)
                      =-.   .- ..+. .++..+       ..+.|+......   .+.+.++.+.||.||-+++.. +.++|.   ...++. 
T Consensus       311 l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k-~~~~~~~~~~~lRl~e  389 (530)
T 2ylm_A          311 LQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKK-AVELGEKASGKLRLLE  389 (530)
T ss_dssp             STTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHT-TCCCCTTCCCCEEEEE
T ss_pred             hhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHH-hcCCCcCCcccEEEEE
Confidence            110   11 1121 111111       135554443332   666778899999999999999 999874   445554 


Q ss_pred             -eCCe---eecCCccccccccCCCceEEEEeee----------eeEEEEEe-------ecceEEEeecCCcCcHHHHHHH
Q 023198          183 -RGGE---QLQNLKTLAYYDIKENEVLQIIRHV----------KHSIFVKL-------LNGRYIILEVAKFDTVRDVKDK  241 (286)
Q Consensus       183 -~~g~---~L~d~~tL~~y~i~~~~~i~l~~~~----------~~~i~vk~-------~~g~~~~l~v~~~~tV~~lK~~  241 (286)
                       ++++   .+.++.+++..+-....++.+..-+          .+.|.|-.       .-|.-|.+.|.+..|..++|++
T Consensus       390 v~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~R  469 (530)
T 2ylm_A          390 IVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKR  469 (530)
T ss_dssp             EETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHH
T ss_pred             EECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHH
Confidence             5666   5677777765433223344432111          02222211       2477888999999999999999


Q ss_pred             HHHHhCCCCC---ceEE--EecC--eEcCCCC
Q 023198          242 LFREIGQAPD---SQRL--VFKR--QQLEDDR  266 (286)
Q Consensus       242 I~~~~gi~~~---~q~L--~~~g--~~L~d~~  266 (286)
                      |+++.|++..   ..++  +-.+  ..++|+.
T Consensus       470 l~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d  501 (530)
T 2ylm_A          470 IQSLLDIQEKEFEKFKFAIVMMGRHQYINEDE  501 (530)
T ss_dssp             HHHHHCCCHHHHTTCEEEEEETTEEEECCTTT
T ss_pred             HHHHhCCCHhhhhhEEEEEEECCcccccCCcc
Confidence            9999999854   4453  4333  4566654

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.18  E-value=1.8e-06  Score=61.11  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=58.8

Q ss_pred             ceeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCee-----ecCCccccccccCCCceEEEE
Q 023198          138 LQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQ-----LQNLKTLAYYDIKENEVLQII  208 (286)
Q Consensus       138 ~~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~-----L~d~~tL~~y~i~~~~~i~l~  208 (286)
                      .|.+.|+..+|+..+++++++|+.+|+++|.+ ..++|++.|.+.+....     +.++.++++++++.|+.|++.
T Consensus         4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~-~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            4 SIIIRVQSPDGVKRITATKRETAATFLKKVAK-EFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCEEECSSEEEECCCCSSCCHHHHHHHHHH-HTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cEEEEEECCCCCEEEEcCCcChHHHHHHHHHH-HcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            47788888889778889999999999999999 99999988877754332     347889999999999999874

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.18  E-value=8.1e-05  Score=67.68  Aligned_cols=134  Identities=22%  Similarity=0.333  Sum_probs=105.5

Q ss_pred             C-eEEEecCCCccHHhHHHHHHHHhcC----CCCCCeEEEe------CCeeecCCccccccccCCCceEEEEeeeeeEEE
Q 023198          148 S-TVKLEVRRAHTVLDVKKMVESMRIC----IPSEDCELFR------GGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIF  216 (286)
Q Consensus       148 g-~~~l~v~~~~tV~~lK~~I~~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~i~  216 (286)
                      + +-++..+++.||.++-..|.+ +..    .+++++.|..      .|.=|+++++|..|++++|+.+....+ .+.+.
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e-~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~-~~~~~   89 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRE-RIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK-QRPLK   89 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHT-TCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC-EEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHH-hcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc-eeEEE
Confidence            6 778999999999999999977 542    3577787776      345589999999999999999987554 36888


Q ss_pred             EEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEecC---------eEcCCCCccccCCCCCCCEEEEEc
Q 023198          217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFKR---------QQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       217 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~g---------~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |..++|....+.+++++|+.++-..|+.+.|+.... .-|.+..         .-|+..+++.+.+.....++++..
T Consensus        90 V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv  166 (371)
T 3ivf_A           90 IRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR  166 (371)
T ss_dssp             EECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred             EECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence            999999999999999999999999999999987543 4465532         234556777777766666776643

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.17  E-value=8.9e-06  Score=59.47  Aligned_cols=70  Identities=7%  Similarity=0.118  Sum_probs=65.1

Q ss_pred             eEEEEEeecc-eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNG-RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g-~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +++.|+..+| +.+.+.|.++++...|...-+++.|++++..+|+|.|..|..+.|-.+.++.+|++|.+.
T Consensus        26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            6777887788 478899999999999999999999999999999999999999999999999999999874

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.08  E-value=2.4e-05  Score=65.54  Aligned_cols=90  Identities=13%  Similarity=0.192  Sum_probs=78.1

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ...+.|.|+. + |+.+.+.+.++++...|++...++.|+|++++|++|+|+.+.+..|..+.+..++++|.+.....+|
T Consensus        19 ~~~i~ikv~~-~-~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg   96 (209)
T 3uf8_A           19 ETHINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   96 (209)
T ss_dssp             CSEEEEEEEC-S-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred             CCcEEEEEEc-C-CCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence            3456777776 6 8889999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             eeEEeecCCC-eEE
Q 023198          139 QEIFVQTPTS-TVK  151 (286)
Q Consensus       139 ~~I~V~~~~g-~~~  151 (286)
                      .. ++.+.+| ...
T Consensus        97 ~t-~~~~~sGl~~~  109 (209)
T 3uf8_A           97 ST-VVTTESGLKYE  109 (209)
T ss_dssp             CC-CEECTTSCEEE
T ss_pred             cc-ccCCCCceEEE
Confidence            43 3446667 443

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=98.05  E-value=1.7e-05  Score=56.65  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.+.|-..+|+..++.+.|++|+.++-++.++++|+.+++..|.|+++.|+-+.++.-.|+.+|+.|.|+..
T Consensus        10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A           10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence            677888889999999999999999999999999999999999999999999999999999999999999864

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.04  E-value=6.9e-05  Score=68.17  Aligned_cols=130  Identities=18%  Similarity=0.183  Sum_probs=100.7

Q ss_pred             CCCCcchHHHHHHHHhhchhcC--CCCCCCeEEe------cCcccccCCcccccCCCCCceeeeeCCceEEEEEeCCCCc
Q 023198            2 KVKKTEKIEKLKLRIHAKVEEE--ILEDLPELFY------AGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEK   73 (286)
Q Consensus         2 ~v~~~dtv~~vK~~i~~~~~~~--i~~~~q~l~~------~g~~L~d~~~l~~y~i~~~s~l~l~~~~~~i~Vk~~~~g~   73 (286)
                      .++|+.||.++-.+|++++.+.  -+.+.--|+-      .|..|++++||..|++.++..++.-+..+.+.|..++ |.
T Consensus        18 ~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~l~d-g~   96 (371)
T 3ivf_A           18 QFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLD-GT   96 (371)
T ss_dssp             EECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEECTT-SC
T ss_pred             EECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEECcC-CC
Confidence            4679999999999999996553  3455566765      2456999999999999999999986677889999999 99


Q ss_pred             EEEEEEcCCccHHHHHHHHHhhhCCCC-ccEEEEECC---------EEeeccccccccccCCCCeEEEE
Q 023198           74 TFELKANRSDTIENIKFIIEVREGIPV-HEYDIYYGG---------KLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        74 ~~~l~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g---------~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      ...+.++++.|+.++=..|..+.|+.. +...|.+..         .-|+..+++.+.+.....++.+.
T Consensus        97 ~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr  165 (371)
T 3ivf_A           97 VKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR  165 (371)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence            999999999999999999999999774 346666532         12455667777665544454443

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.99  E-value=8.5e-06  Score=62.42  Aligned_cols=71  Identities=20%  Similarity=0.259  Sum_probs=59.3

Q ss_pred             EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCC-------------------------------------ceEEE
Q 023198          214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPD-------------------------------------SQRLV  256 (286)
Q Consensus       214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-------------------------------------~q~L~  256 (286)
                      .+.|++++|...++.|+.+.||.+++..||.+.||+..                                     .|+|.
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            57899999999999999999999999999999999854                                     33332


Q ss_pred             e--cCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          257 F--KRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       257 ~--~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .  ++.-|++++||.++||.++++|-|..+
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence            1  235668899999999999999887653

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.94  E-value=5.8e-05  Score=55.10  Aligned_cols=72  Identities=13%  Similarity=0.252  Sum_probs=65.6

Q ss_pred             CceEEEEEeCCCC-cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNE-KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g-~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      ..+.|.|+... | +.+.+.|.++++...|.....++.|++++..+++|+|..+..+.|.+++++.+|++|.+.
T Consensus        24 ~~I~LkV~~~d-g~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           24 QQLQLRVQGKE-KHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SEEEEEEEESS-SSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEEcCC-CCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            45777888777 7 489999999999999999999999999999999999999999999999999999998764

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.89  E-value=4e-05  Score=64.16  Aligned_cols=71  Identities=14%  Similarity=0.275  Sum_probs=65.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +++.|+. +|+.+.+.+..+++...|++..|++.|++++++||.|.|+.+.+..|-.+..+.++++|.+...
T Consensus        22 i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e   92 (209)
T 3uf8_A           22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (209)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred             EEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence            6677776 7788899999999999999999999999999999999999999999999999999999987653

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.86  E-value=7.2e-05  Score=53.87  Aligned_cols=71  Identities=15%  Similarity=0.277  Sum_probs=66.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +++.|+. .|..+.+.+..++....|...-|++.|++++..|+.|.|..+.++.|-.+.++.+|++|.+...
T Consensus        22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            6777874 7888999999999999999999999999999999999999999999999999999999998764

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.84  E-value=2.2e-06  Score=76.87  Aligned_cols=81  Identities=12%  Similarity=0.197  Sum_probs=2.1

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ  139 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~  139 (286)
                      ..+.|.|+. . |+.+.+.|.++++...|++...++.|++++++|++|+|+.+.++.|.+++++.+|++|.+.....|||
T Consensus        20 ~~I~LKV~~-~-g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~   97 (360)
T 3ix6_A           20 THINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM   97 (360)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CeEEEEEec-C-CcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence            356677776 5 88999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             eEE
Q 023198          140 EIF  142 (286)
Q Consensus       140 ~I~  142 (286)
                      ..|
T Consensus        98 ~~Y  100 (360)
T 3ix6_A           98 RTY  100 (360)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.79  E-value=9.6e-05  Score=52.74  Aligned_cols=73  Identities=14%  Similarity=0.127  Sum_probs=67.2

Q ss_pred             cceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEee
Q 023198          137 ELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRH  210 (286)
Q Consensus       137 ~~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~  210 (286)
                      +||.|.|-.+++ ..++.|.++.++.+|-++-.+ +.|+.++++.|.|+++.++-+-.++--|+.+|+.+.|+..
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~-K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCR-RQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHH-HTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHH-HhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence            578899988999 999999999999999999999 9999999999999999999999999999999999999754

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.72  E-value=4.7e-06  Score=74.80  Aligned_cols=71  Identities=14%  Similarity=0.275  Sum_probs=0.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +++.|+. +|+.+.+.|.++++...|++..+++.|++++.+|+.|.|+.+.++.|.+++++++|++|++...
T Consensus        22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~   92 (360)
T 3ix6_A           22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (360)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence            6777876 6788999999999999999999999999999999999999999999999999999999988753

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.60  E-value=0.00012  Score=51.47  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=57.7

Q ss_pred             EEEEE--eecceEEEeecCCcCcHHHHHHHHHHHhCCCC-----CceEEEecCeEcCCCCccccCCCCCCCEEEE
Q 023198          214 SIFVK--LLNGRYIILEVAKFDTVRDVKDKLFREIGQAP-----DSQRLVFKRQQLEDDRNLASYKIVNESIVNL  281 (286)
Q Consensus       214 ~i~vk--~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-----~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l  281 (286)
                      +|.+.  -..++++-++++...|+..|...+.+..+++.     ...|..-+|..|.++.+|++|+|.+||.|.+
T Consensus         6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            34444  36889999999999999999999999999765     2345667999999999999999999999976

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=97.56  E-value=0.0019  Score=61.34  Aligned_cols=180  Identities=9%  Similarity=0.115  Sum_probs=126.6

Q ss_pred             EEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC----CE---E-e-----eccccccccccCCCCeEEEEeecc-----
Q 023198           75 FELKANRSDTIENIKFIIEVREGIPVHEYDIYYG----GK---L-I-----ESYITLDVLNINNEDTLQMISVPK-----  136 (286)
Q Consensus        75 ~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g~---~-L-----~D~~tL~~~~I~~~s~i~l~~~~~-----  136 (286)
                      .++.|..++|+.++|+.|.+..|+|+++|||-..    ++   . +     ....++.++.- .++.+.+.+...     
T Consensus        38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~  116 (530)
T 2ylm_A           38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA  116 (530)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred             ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence            3567889999999999999999999999999422    11   1 1     11123333211 233333333210     


Q ss_pred             ------------cceeEEeecCC--C-eE----EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeC------Ceeec-C
Q 023198          137 ------------ELQEIFVQTPT--S-TV----KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRG------GEQLQ-N  190 (286)
Q Consensus       137 ------------~~~~I~V~~~~--g-~~----~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~------g~~L~-d  190 (286)
                                  ..+-||+|-.+  . ++    .+.|+.+++|.++-..|.+ +.|+|++.-...|.      ...|+ .
T Consensus       117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~-~~g~p~dt~l~lyEEi~~~~ie~l~~~  195 (530)
T 2ylm_A          117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCD-RAGFIQDTSLILYEEVKPNLTERIQDY  195 (530)
T ss_dssp             TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHH-HHTCCTTCCEEEEEEEETTEEEECCCS
T ss_pred             CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHH-HcCCCCCCceEEEEecCCCceeEcccc
Confidence                        12556666322  1 22    3568889999999999999 99999998776663      23566 6


Q ss_pred             Ccccccc--ccCCCceEEEEeee--------------------eeEEEEEee---cceEEEeecCCcCcHHHHHHHHHHH
Q 023198          191 LKTLAYY--DIKENEVLQIIRHV--------------------KHSIFVKLL---NGRYIILEVAKFDTVRDVKDKLFRE  245 (286)
Q Consensus       191 ~~tL~~y--~i~~~~~i~l~~~~--------------------~~~i~vk~~---~g~~~~l~v~~~~tV~~lK~~I~~~  245 (286)
                      +.|+...  .+.+|++|..-...                    ++.|.++..   +...+.+.++...|-.++-++|+++
T Consensus       196 ~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~  275 (530)
T 2ylm_A          196 DVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR  275 (530)
T ss_dssp             SSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHH
T ss_pred             cccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence            7899999  99999998775431                    155555532   3567999999999999999999999


Q ss_pred             hCCCCCceEEE
Q 023198          246 IGQAPDSQRLV  256 (286)
Q Consensus       246 ~gi~~~~q~L~  256 (286)
                      .|++|...||.
T Consensus       276 l~~dP~~lRf~  286 (530)
T 2ylm_A          276 LNTDPMLLQFF  286 (530)
T ss_dssp             HTSCGGGEEEE
T ss_pred             hCCCchhEEEE
Confidence            99999998875

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.56  E-value=0.0003  Score=49.94  Aligned_cols=70  Identities=16%  Similarity=0.259  Sum_probs=61.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEc---CCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQL---EDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L---~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      ..|.|+.++|+.+.-...+++|+.+|..-|.. .+.+...+.|+  |..+.+   +.+.||.+.|+.++++|.+-.
T Consensus         8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            56788999999988899999999999999998 67888888997  678888   457899999999999998854

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.51  E-value=0.00072  Score=48.65  Aligned_cols=72  Identities=11%  Similarity=0.213  Sum_probs=66.2

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      .+.|.|+. . |..+.+.+..++....|.....++.|++++.-|++|.|..+.++.|-++.++.++++|.+++-
T Consensus        21 ~IniKV~~-~-g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           21 LFPLKIRC-R-ADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             CEEEEEEC-S-SSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             eEEEEEEc-C-CcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            46778884 5 899999999999999999999999999999999999999999999999999999999987753

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.46  E-value=0.00018  Score=55.01  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-------------------------------------cEEE
Q 023198           63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-------------------------------------EYDI  105 (286)
Q Consensus        63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-------------------------------------~q~L  105 (286)
                      .+.|+.++ |...++.|+.+.||.+++..|..+.||+..                                     +|+|
T Consensus        13 ~LkV~llD-g~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL   91 (128)
T 2kc2_A           13 PLKIRMLD-GTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL   91 (128)
T ss_dssp             EEEEECTT-SCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred             cEEEEcCC-CCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence            58899999 999999999999999999999999999855                                     3333


Q ss_pred             EE--CCEEeeccccccccccCCCCeEEEEee
Q 023198          106 YY--GGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus       106 ~~--~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      ..  .+.-|++++||.++||.+++++.|..+
T Consensus        92 ~~dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           92 HTDDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CCSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             cccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence            21  124578899999999999999887644

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.42  E-value=2e-05  Score=72.18  Aligned_cols=81  Identities=11%  Similarity=0.221  Sum_probs=0.0

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccccee
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQE  140 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~  140 (286)
                      .+.|.|+. + |..+.+.|.++++...|++...++.|+|+.+++++|+|+++.++.|.+++++.+|++|.+.....||..
T Consensus        30 ~i~lkv~~-~-~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n  107 (389)
T 4da1_A           30 HINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN  107 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEec-C-CcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence            45566665 5 888899999999999999999999999999999999999999999999999999999999999888755


Q ss_pred             EEe
Q 023198          141 IFV  143 (286)
Q Consensus       141 I~V  143 (286)
                      .++
T Consensus       108 ~~~  110 (389)
T 4da1_A          108 LYF  110 (389)
T ss_dssp             ---
T ss_pred             cce
Confidence            554

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.25  E-value=4.2e-05  Score=70.07  Aligned_cols=70  Identities=14%  Similarity=0.289  Sum_probs=0.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      +++.|+. +|..+.+.|.++++...|++..+++.|+++.+++|.|.|+.+.++.|-.+.++.+|++|.+..
T Consensus        31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~  100 (389)
T 4da1_A           31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR  100 (389)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence            6677776 778888999999999999999999999999999999999999999999999999999998764

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.16  E-value=0.002  Score=47.95  Aligned_cols=72  Identities=15%  Similarity=0.218  Sum_probs=63.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE---DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ..|.|+.++|+.+.-...+++|+.+|..-|....+.+.....|+  |..+.+.   .++||.+.|+.+..+|.+...
T Consensus        14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            56778999999999999999999999999999988887788886  6788886   368999999999999998764

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.02  E-value=0.0026  Score=44.63  Aligned_cols=69  Identities=14%  Similarity=0.220  Sum_probs=56.8

Q ss_pred             eEEEEEe--CCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC-----ccEEEEECCEEeeccccccccccCCCCeEEE
Q 023198           62 MKLYFKT--PSNEKTFELKANRSDTIENIKFIIEVREGIPV-----HEYDIYYGGKLIESYITLDVLNINNEDTLQM  131 (286)
Q Consensus        62 ~~i~Vk~--~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-----~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l  131 (286)
                      +.|++..  -. ++++.+.++...||..|.+.+-+..+++.     .+.|+.-.+..|.++.+|++|+|.+|+.+.+
T Consensus         5 I~ITidl~~y~-~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            5 IDITIDLKHYN-GSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEECTTTT-CCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEeeccC-CceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            4566664  34 89999999999999999999999888764     2345556688899999999999999998764

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=97.00  E-value=0.0019  Score=49.26  Aligned_cols=71  Identities=13%  Similarity=0.224  Sum_probs=62.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEc--C-CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQL--E-DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L--~-d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ..|.||.++|..+.-...+++||.+|..-|... +.+...+.|+  |..+.|  . .+.||.+.|+.+..+|.+..+
T Consensus        44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~  119 (124)
T 1wj4_A           44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES  119 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence            678889999999999999999999999999887 8888888886  678888  3 478999999999998888764

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.88  E-value=0.0049  Score=43.47  Aligned_cols=71  Identities=21%  Similarity=0.316  Sum_probs=59.5

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe---eccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI---ESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L---~D~~tL~~~~I~~~s~i~l~  132 (286)
                      +...|-||.++ |+.+.-....++||.+|...|.. .+.++....|+  |-.+.+   +.+.||.+.|+.+.+++.+-
T Consensus         6 ~~~~i~iRlpd-G~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            6 PVSKLRIRTPS-GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             CEEEEEEECTT-SCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             CeEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            45678899998 99998899999999999999998 66777788887  557777   34789999999988877764

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=96.44  E-value=0.0092  Score=44.19  Aligned_cols=64  Identities=28%  Similarity=0.408  Sum_probs=46.1

Q ss_pred             ceEEEeecCCcCcHHHHHHHHHHHh--CCCCC------ceEEEe----cCeEcCCC-------------CccccCCCCCC
Q 023198          222 GRYIILEVAKFDTVRDVKDKLFREI--GQAPD------SQRLVF----KRQQLEDD-------------RNLASYKIVNE  276 (286)
Q Consensus       222 g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L~~----~g~~L~d~-------------~tL~~y~I~~~  276 (286)
                      +..+.+.|...|||.++|++|.+..  |.|.+      ...|-+    .|+.|.|.             .||+.|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4568889999999999999997653  45544      445544    35566652             58999999999


Q ss_pred             CEEEEEcCC
Q 023198          277 SIVNLTDLG  285 (286)
Q Consensus       277 ~~l~l~~~~  285 (286)
                      +++-|+.+|
T Consensus       103 atl~l~~~~  111 (111)
T 4e71_A          103 ATLILSKVG  111 (111)
T ss_dssp             CEEEEEEC-
T ss_pred             CEEEEEeCC
Confidence            999999875

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.35  E-value=0.011  Score=41.18  Aligned_cols=67  Identities=10%  Similarity=0.217  Sum_probs=55.7

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE---ecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.|+.+..+...+.|+|..+..++--.|++++.+.++...|.   -.+.+|+-+++|.||||+.   ++..+.
T Consensus        13 LvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~   82 (91)
T 2daj_A           13 VVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV   82 (91)
T ss_dssp             EEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred             EEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence            344445556667899999999999999999999999999886   3678999999999999985   766654

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.33  E-value=0.012  Score=43.66  Aligned_cols=71  Identities=21%  Similarity=0.280  Sum_probs=59.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC--CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE--DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~--d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ..|.|+.++|+.+.-....++||.+|..-|... +..+....|+  |..+.|.  .+.||.+.|+.+..+|.+..+
T Consensus        24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~   98 (109)
T 2cr5_A           24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   98 (109)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence            567788999999888999999999999999965 5666778885  6788886  468999999999999988654

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=96.12  E-value=0.023  Score=43.21  Aligned_cols=72  Identities=13%  Similarity=0.239  Sum_probs=60.5

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe--e-ccccccccccCCCCeEEEE
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI--E-SYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L--~-D~~tL~~~~I~~~s~i~l~  132 (286)
                      .+...|-||.++ |+.+.-....++||.+|...|... +.++....|+  |-.+.|  + .+.||.+.|+.+..++.+.
T Consensus        41 ~~~t~IqIRlPd-G~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           41 GPKAQLMLRYPD-GKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             SCEEEEEEECTT-SCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CCcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            457889999999 999999999999999999999886 7777777886  568888  3 3789999999987777654

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=96.07  E-value=0.028  Score=41.68  Aligned_cols=74  Identities=9%  Similarity=0.202  Sum_probs=61.6

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEee---ccccccccccCCCCeEEEEee
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIE---SYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      +...|-||.++ |+.+.-....++||.+|.+.|....+.+.....|+  |-.+.+.   .+.||.+.|+.+.+++.+...
T Consensus        12 ~~t~IqIRlpd-G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           12 TIARIQFRLPD-GSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             CCEEEEEECSS-SCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            45788999999 99999999999999999999999888776677775  5577775   378999999999887776644

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.90  E-value=0.029  Score=41.51  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=44.2

Q ss_pred             CcEEEEEEcCCccHHHHHHHHHhhh--CCCCc------cEEEEEC----CEEeecc-------------ccccccccCCC
Q 023198           72 EKTFELKANRSDTIENIKFIIEVRE--GIPVH------EYDIYYG----GKLIESY-------------ITLDVLNINNE  126 (286)
Q Consensus        72 g~~~~l~v~~~~tV~~lK~~I~~~~--gip~~------~q~L~~~----g~~L~D~-------------~tL~~~~I~~~  126 (286)
                      +..+++.|-..|||.++|++|-+..  |.|.+      ...|-+.    |+.|.|.             +||+.|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4568889999999999999987753  66643      4556552    4556542             68999999999


Q ss_pred             CeEEEEe
Q 023198          127 DTLQMIS  133 (286)
Q Consensus       127 s~i~l~~  133 (286)
                      +++.++.
T Consensus       103 atl~l~~  109 (111)
T 4e71_A          103 ATLILSK  109 (111)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9998764

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=95.83  E-value=0.019  Score=43.89  Aligned_cols=68  Identities=21%  Similarity=0.356  Sum_probs=56.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHh-CCCCCceEEE--ecCeEcCC-CCccccCCCCCCCEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREI-GQAPDSQRLV--FKRQQLED-DRNLASYKIVNESIVN  280 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~q~L~--~~g~~L~d-~~tL~~y~I~~~~~l~  280 (286)
                      ..|.|+..+|..+.-....++||.+|..-|.... +.....+.|+  |..+.+.| +.||.+.|+.+..+|.
T Consensus        53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~  124 (127)
T 1s3s_G           53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ  124 (127)
T ss_dssp             CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence            5677888999999999999999999999999864 4556677876  67889975 6899999999865543

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=95.70  E-value=0.076  Score=40.11  Aligned_cols=65  Identities=20%  Similarity=0.291  Sum_probs=48.7

Q ss_pred             cceEEEeecCCcCcHHHHHHHHHHHh--CCCC------CceEEEe----cCe-EcCCC-------------CccccCCCC
Q 023198          221 NGRYIILEVAKFDTVRDVKDKLFREI--GQAP------DSQRLVF----KRQ-QLEDD-------------RNLASYKIV  274 (286)
Q Consensus       221 ~g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~------~~q~L~~----~g~-~L~d~-------------~tL~~y~I~  274 (286)
                      ++..+.+.|...|||.++|++|.+..  |.|.      +...|-+    .|+ .|.|.             .||+.|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            45668889999999999999997653  4544      4566654    333 36652             689999999


Q ss_pred             CCCEEEEEcCC
Q 023198          275 NESIVNLTDLG  285 (286)
Q Consensus       275 ~~~~l~l~~~~  285 (286)
                      +|+++-|+.+.
T Consensus        95 dgatv~l~~~~  105 (127)
T 3h6n_A           95 EGASLAMSLID  105 (127)
T ss_dssp             TTCEEEEEECC
T ss_pred             CCCEEEEEEcc
Confidence            99999998653

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=95.68  E-value=0.11  Score=39.32  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             CcEEEEEEcCCccHHHHHHHHHhhh--CCCC------ccEEEEE-C---CEE-eecc-------------ccccccccCC
Q 023198           72 EKTFELKANRSDTIENIKFIIEVRE--GIPV------HEYDIYY-G---GKL-IESY-------------ITLDVLNINN  125 (286)
Q Consensus        72 g~~~~l~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~-~---g~~-L~D~-------------~tL~~~~I~~  125 (286)
                      +..+++.|-..|||.++|++|-+..  |.|.      +...|-+ .   |+. |.|.             +||+.|+|.+
T Consensus        16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d   95 (127)
T 3h6n_A           16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE   95 (127)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred             CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence            5678999999999999999987753  6664      5667755 2   332 5442             6999999999


Q ss_pred             CCeEEEEeec
Q 023198          126 EDTLQMISVP  135 (286)
Q Consensus       126 ~s~i~l~~~~  135 (286)
                      |+++.|+.+.
T Consensus        96 gatv~l~~~~  105 (127)
T 3h6n_A           96 GASLAMSLID  105 (127)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEEcc
Confidence            9999987553

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.93  E-value=0.1  Score=40.00  Aligned_cols=64  Identities=19%  Similarity=0.314  Sum_probs=47.2

Q ss_pred             cEEEEEEcCCccHHHHHHHHHhhh--CCCCc------cEEEEE----CCE-Eeecc-------------ccccccccCCC
Q 023198           73 KTFELKANRSDTIENIKFIIEVRE--GIPVH------EYDIYY----GGK-LIESY-------------ITLDVLNINNE  126 (286)
Q Consensus        73 ~~~~l~v~~~~tV~~lK~~I~~~~--gip~~------~q~L~~----~g~-~L~D~-------------~tL~~~~I~~~  126 (286)
                      ..+++.|-..|||.++|++|-+..  |.|.+      ...|-+    +|+ .|.|.             +||+.|+|.+|
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            578999999999999999988764  67643      345544    243 35442             59999999999


Q ss_pred             CeEEEEeecc
Q 023198          127 DTLQMISVPK  136 (286)
Q Consensus       127 s~i~l~~~~~  136 (286)
                      +++.++.+..
T Consensus       121 a~l~l~~~~~  130 (138)
T 2r2o_A          121 ATVALVPCLT  130 (138)
T ss_dssp             CEEEEEEC--
T ss_pred             CEEEEEECCC
Confidence            9999876543

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=94.80  E-value=0.092  Score=38.78  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEee--ccccccccccCCCCeEEEEe
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIE--SYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--D~~tL~~~~I~~~s~i~l~~  133 (286)
                      +...|-||.++ |+.+.-....++||.+|...|... +..+....|+  |-.+.|.  .+.||.+.|+.+..++.+..
T Consensus        22 ~~~~IqiRlpd-G~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           22 EVVTVALRCPN-GRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             SEEEEEEECTT-SCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            35788999999 999998999999999999999965 5555666775  5577775  47899999999888776643

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=94.52  E-value=0.11  Score=38.69  Aligned_cols=63  Identities=19%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             CcEEEEEEcCCccHHHHHHHHHhhh--CCCCc------cEEEEE-CC---E-Eeecc-------------ccccccccCC
Q 023198           72 EKTFELKANRSDTIENIKFIIEVRE--GIPVH------EYDIYY-GG---K-LIESY-------------ITLDVLNINN  125 (286)
Q Consensus        72 g~~~~l~v~~~~tV~~lK~~I~~~~--gip~~------~q~L~~-~g---~-~L~D~-------------~tL~~~~I~~  125 (286)
                      ...+++.|-..|||.++|++|-+..  |.|.+      +..|-+ .|   + .|.|.             +||+.|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            3558888999999999999987653  66643      456654 33   3 25441             6899999999


Q ss_pred             CCeEEEEee
Q 023198          126 EDTLQMISV  134 (286)
Q Consensus       126 ~s~i~l~~~  134 (286)
                      |+++.++.+
T Consensus       106 gatl~l~~~  114 (117)
T 4e74_A          106 GSVVALVSK  114 (117)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999998755

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.49  E-value=0.16  Score=38.94  Aligned_cols=63  Identities=21%  Similarity=0.355  Sum_probs=47.1

Q ss_pred             eEEEeecCCcCcHHHHHHHHHHHh--CCCCC------ceEEEe----cCe-EcCCC-------------CccccCCCCCC
Q 023198          223 RYIILEVAKFDTVRDVKDKLFREI--GQAPD------SQRLVF----KRQ-QLEDD-------------RNLASYKIVNE  276 (286)
Q Consensus       223 ~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L~~----~g~-~L~d~-------------~tL~~y~I~~~  276 (286)
                      ..+.+.|...|||.++|++|.+..  |+|..      ..-|-+    +|+ .|.|.             .||+.|+|.+|
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            568899999999999999998764  45543      334433    343 36653             48999999999


Q ss_pred             CEEEEEcCC
Q 023198          277 SIVNLTDLG  285 (286)
Q Consensus       277 ~~l~l~~~~  285 (286)
                      +++.|+.+.
T Consensus       121 a~l~l~~~~  129 (138)
T 2r2o_A          121 ATVALVPCL  129 (138)
T ss_dssp             CEEEEEEC-
T ss_pred             CEEEEEECC
Confidence            999998763

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=94.47  E-value=0.16  Score=37.89  Aligned_cols=64  Identities=23%  Similarity=0.406  Sum_probs=47.1

Q ss_pred             ceEEEeecCCcCcHHHHHHHHHHHh--CCCCC------ceEEEe-cC---e-EcCCC-------------CccccCCCCC
Q 023198          222 GRYIILEVAKFDTVRDVKDKLFREI--GQAPD------SQRLVF-KR---Q-QLEDD-------------RNLASYKIVN  275 (286)
Q Consensus       222 g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L~~-~g---~-~L~d~-------------~tL~~y~I~~  275 (286)
                      ...+.+.|...|||.++|++|.+..  |.|..      ...|-+ .|   + .|.|.             .||++|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            3458888999999999999997653  55544      445544 22   3 35542             6899999999


Q ss_pred             CCEEEEEcCC
Q 023198          276 ESIVNLTDLG  285 (286)
Q Consensus       276 ~~~l~l~~~~  285 (286)
                      |+++.|+.+.
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999998774

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=94.32  E-value=0.18  Score=41.97  Aligned_cols=61  Identities=11%  Similarity=0.248  Sum_probs=49.7

Q ss_pred             EEEeecCCcCcHHHHHHHHHHHhCCCCC-ceEEE--e-c--CeEcCC-CCccccCCCCCCCEEEEEcC
Q 023198          224 YIILEVAKFDTVRDVKDKLFREIGQAPD-SQRLV--F-K--RQQLED-DRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~--~-~--g~~L~d-~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .+++.++..+|+.+|++.++..++++++ ..||-  + .  ...|.| ++||.+++|.++..|-+-.|
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r  208 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK  208 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence            4567889999999999999999999997 68873  3 2  335655 57999999999999887655

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=93.95  E-value=0.1  Score=39.63  Aligned_cols=68  Identities=16%  Similarity=0.209  Sum_probs=55.2

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhh-CCCCccEEEE--ECCEEeec-cccccccccCCCCe
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVRE-GIPVHEYDIY--YGGKLIES-YITLDVLNINNEDT  128 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~D-~~tL~~~~I~~~s~  128 (286)
                      +...|-||.++ |..+.-..+.++||.+|.+.|.... +.+.....|+  |-.+.++| +.||.+.|+.+...
T Consensus        51 ~~t~IqIRlpd-G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav  122 (127)
T 1s3s_G           51 PTTNIQIRLAD-GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI  122 (127)
T ss_dssp             CCCCEEEEETT-TTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred             CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence            46788899999 9999999999999999999999863 4555667776  55788865 68999999987543

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=93.87  E-value=0.24  Score=34.35  Aligned_cols=57  Identities=18%  Similarity=0.273  Sum_probs=50.2

Q ss_pred             EeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          226 ILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       226 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      .-.++-..++..||+.++.+.|++-+.+.+...+..|+++++|.+.+++-...+.+.
T Consensus         6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin   62 (89)
T 2juo_A            6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS   62 (89)
T ss_dssp             EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred             hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence            345666788999999999999999999999888888999999999999888877764

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=93.54  E-value=0.45  Score=39.95  Aligned_cols=61  Identities=13%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             EEEeecCCcCcHHHHHHHHHHHhCCCCC-ceEEEe-----cCeEcCC-CCccccCCCCCCCEEEEEcC
Q 023198          224 YIILEVAKFDTVRDVKDKLFREIGQAPD-SQRLVF-----KRQQLED-DRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~-----~g~~L~d-~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .++..++..+|+.+|++.++..++|+++ ..||-.     ....|.| +.||.++++.++..|-+-.+
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r  220 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ  220 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence            3567789999999999999999999997 688843     2446665 58999999999999877654

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=93.02  E-value=0.78  Score=34.46  Aligned_cols=61  Identities=26%  Similarity=0.412  Sum_probs=43.5

Q ss_pred             eEEEeecCCcCcHHHHHHHHHHH----hCCCCCc----eEEEe----cCeEcCCC--------------CccccCCCCCC
Q 023198          223 RYIILEVAKFDTVRDVKDKLFRE----IGQAPDS----QRLVF----KRQQLEDD--------------RNLASYKIVNE  276 (286)
Q Consensus       223 ~~~~l~v~~~~tV~~lK~~I~~~----~gi~~~~----q~L~~----~g~~L~d~--------------~tL~~y~I~~~  276 (286)
                      ..+.+.|...|||.++|++|.+.    .|.|..+    ..|-+    .|..|.|.              .||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            46888999999999999999543    4776643    33432    12233321              57899999999


Q ss_pred             CEEEEEc
Q 023198          277 SIVNLTD  283 (286)
Q Consensus       277 ~~l~l~~  283 (286)
                      +++-++.
T Consensus       119 atlal~k  125 (126)
T 3kuz_A          119 STIKVFK  125 (126)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEee
Confidence            9998864

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=92.64  E-value=0.57  Score=35.18  Aligned_cols=60  Identities=23%  Similarity=0.238  Sum_probs=42.7

Q ss_pred             cEEEEEEcCCccHHHHHHHHHhh----hCCCCc----cEEEEE-CC---EEee----------cc----ccccccccCCC
Q 023198           73 KTFELKANRSDTIENIKFIIEVR----EGIPVH----EYDIYY-GG---KLIE----------SY----ITLDVLNINNE  126 (286)
Q Consensus        73 ~~~~l~v~~~~tV~~lK~~I~~~----~gip~~----~q~L~~-~g---~~L~----------D~----~tL~~~~I~~~  126 (286)
                      ..+++.|-..|||.++|++|-+.    .|.|..    ...|-+ .|   ..|.          ++    +||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            57899999999999999997653    477753    445543 22   2332          22    57889999999


Q ss_pred             CeEEEE
Q 023198          127 DTLQMI  132 (286)
Q Consensus       127 s~i~l~  132 (286)
                      +++.++
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            998765

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=92.59  E-value=0.56  Score=32.55  Aligned_cols=55  Identities=18%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             ecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198          153 EVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII  208 (286)
Q Consensus       153 ~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~  208 (286)
                      .++-..+...||+.++. +.|++.+.+.+...+..|+++++|.+.+++-.-.+.+.
T Consensus         8 hmDI~epL~~Lk~LLe~-Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin   62 (89)
T 2juo_A            8 AIDINEPIGNLKKLLEP-RLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS   62 (89)
T ss_dssp             EEESSSBGGGHHHHSHH-HHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred             hccccCcHHHHHHHHHH-HhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence            44556788999999999 99999999999988888999999999999988887753

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=92.09  E-value=0.3  Score=40.60  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             EEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEE--E-CCE--Eeec-cccccccccCCCCeEEEEeecccc
Q 023198           74 TFELKANRSDTIENIKFIIEVREGIPVH-EYDIY--Y-GGK--LIES-YITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        74 ~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~--~-~g~--~L~D-~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .+++.++..+||.++++.+....++|++ .-||-  + .+.  .|+| +.||.++++.++..|.+-++..+|
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            3567789999999999999999999997 68883  3 333  4655 579999999999999887775443

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=92.02  E-value=0.51  Score=39.57  Aligned_cols=65  Identities=14%  Similarity=0.119  Sum_probs=52.1

Q ss_pred             EEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEE-C----CEEeec-cccccccccCCCCeEEEEeecccc
Q 023198           74 TFELKANRSDTIENIKFIIEVREGIPVH-EYDIYY-G----GKLIES-YITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        74 ~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~-~----g~~L~D-~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .++..++..+||.++++.+....++|++ .-||-. .    ...|.| +.||.++++.++..|.+-.+..+|
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg  224 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG  224 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            3556779999999999999999999997 588853 3    235665 589999999999988887775443

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=91.93  E-value=0.56  Score=31.91  Aligned_cols=59  Identities=12%  Similarity=0.204  Sum_probs=43.2

Q ss_pred             eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198          139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII  208 (286)
Q Consensus       139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~  208 (286)
                      |+|.|+..+. ...+++.+..||.+|    -+ ..|+|++......||+....+.      +..|+.+.+.
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dL----L~-~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv   60 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADL----VR-AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL   60 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHH----HH-TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHH----HH-HcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence            5566665533 567899999999998    44 6789999887778998876655      2348887763

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=90.74  E-value=0.6  Score=31.76  Aligned_cols=60  Identities=15%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      |.+.|+..+.+...+++++..|+++|-    +..|+|+..-...-+|+.+..+.      +.+|+.|.++
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv   60 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL   60 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence            567777764455568999999999865    57899999887778898886554      2348888765

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.30  E-value=0.97  Score=31.49  Aligned_cols=62  Identities=13%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEe---CCeeecCCccccccccCC
Q 023198          139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFR---GGEQLQNLKTLAYYDIKE  201 (286)
Q Consensus       139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~---~g~~L~d~~tL~~y~i~~  201 (286)
                      .++.|+-... ..-+.|.|.-+..++--.|.. +..+.++...|..   .+..|+-+++|.||+++.
T Consensus        11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~-Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           11 VRVVINFKKTQKTIVRVSPHASLQELAPIICS-KCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             EEEEEEETTTEEEEEEECSSSCTTTHHHHHHH-HTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEeecCcceeEEEeCCCCcHHHHHHHHhh-cccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            3444554444 556789999999999999999 9999999988885   566899999999999986

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=89.77  E-value=0.29  Score=37.31  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             EEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198          225 IILEVAKFDTVRDVKDKLFREIGQAPDSQRLV  256 (286)
Q Consensus       225 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~  256 (286)
                      .++.|..+.|+.+|+..|++..|+|+++|||-
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW   89 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW   89 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence            35789999999999999999999999999984

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=89.13  E-value=2.7  Score=39.98  Aligned_cols=64  Identities=14%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CcEEEEEEcCCccHHHHHHHHHhhh--CCCC------ccEEEEE----CCE-Eeecc-------------ccccccccCC
Q 023198           72 EKTFELKANRSDTIENIKFIIEVRE--GIPV------HEYDIYY----GGK-LIESY-------------ITLDVLNINN  125 (286)
Q Consensus        72 g~~~~l~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~D~-------------~tL~~~~I~~  125 (286)
                      ...+++.|-..|||.++|++|-+..  |.|.      ++..|-+    .|+ .|.|.             +||++|+|.+
T Consensus       246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D  325 (627)
T 3ig3_A          246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD  325 (627)
T ss_dssp             -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred             CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence            4678899999999999999987753  6664      4556654    233 34331             6899999999


Q ss_pred             CCeEEEEeec
Q 023198          126 EDTLQMISVP  135 (286)
Q Consensus       126 ~s~i~l~~~~  135 (286)
                      |+++.++.+.
T Consensus       326 ga~v~L~p~~  335 (627)
T 3ig3_A          326 GSLVALVPKQ  335 (627)
T ss_dssp             TCEEEEEEC-
T ss_pred             CceEEEEecc
Confidence            9999987665

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=88.26  E-value=0.95  Score=31.55  Aligned_cols=45  Identities=9%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR  259 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g  259 (286)
                      +.|.|...  -++.++|++..+..+|+++|.++.++|++.-.|.|+.
T Consensus         6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            44555542  6899999999999999999999999999999998855

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=86.77  E-value=5.1  Score=26.52  Aligned_cols=61  Identities=18%  Similarity=0.167  Sum_probs=44.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |.|.|+... ....+++....|+.+|.+.+    ++++....+..+|.....+.     -+++|+.|.++.
T Consensus         5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~   65 (70)
T 1ryj_A            5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR   65 (70)
T ss_dssp             EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred             EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence            566665433 23456677788999998765    67777777788999887654     578899988764

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=85.62  E-value=3.2  Score=39.46  Aligned_cols=62  Identities=26%  Similarity=0.453  Sum_probs=46.0

Q ss_pred             eEEEeecCCcCcHHHHHHHHHHHh--CCCC------CceEEEe----cCe-EcCCC-------------CccccCCCCCC
Q 023198          223 RYIILEVAKFDTVRDVKDKLFREI--GQAP------DSQRLVF----KRQ-QLEDD-------------RNLASYKIVNE  276 (286)
Q Consensus       223 ~~~~l~v~~~~tV~~lK~~I~~~~--gi~~------~~q~L~~----~g~-~L~d~-------------~tL~~y~I~~~  276 (286)
                      ..+.+.|...|||.++|++|-+..  |.|.      +...|-+    .|+ .|.|.             .||++|+|.+|
T Consensus       247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg  326 (627)
T 3ig3_A          247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG  326 (627)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence            568889999999999999997653  4443      4455543    233 35442             68999999999


Q ss_pred             CEEEEEcC
Q 023198          277 SIVNLTDL  284 (286)
Q Consensus       277 ~~l~l~~~  284 (286)
                      +++-|+.+
T Consensus       327 a~v~L~p~  334 (627)
T 3ig3_A          327 SLVALVPK  334 (627)
T ss_dssp             CEEEEEEC
T ss_pred             ceEEEEec
Confidence            99998765

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=85.40  E-value=4.8  Score=38.39  Aligned_cols=63  Identities=19%  Similarity=0.323  Sum_probs=46.4

Q ss_pred             cEEEEEEcCCccHHHHHHHHHhhh--CCCC------ccEEEEE----CCE-Eeecc-------------ccccccccCCC
Q 023198           73 KTFELKANRSDTIENIKFIIEVRE--GIPV------HEYDIYY----GGK-LIESY-------------ITLDVLNINNE  126 (286)
Q Consensus        73 ~~~~l~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~D~-------------~tL~~~~I~~~  126 (286)
                      ..+++.|-..|||.++|++|-+..  |.|.      ++..|-+    .|+ .|.|.             +||+.|+|.+|
T Consensus       274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  353 (644)
T 3hm6_X          274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  353 (644)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence            558899999999999999988643  6664      4455654    233 35442             69999999999


Q ss_pred             CeEEEEeec
Q 023198          127 DTLQMISVP  135 (286)
Q Consensus       127 s~i~l~~~~  135 (286)
                      +++.|+.+.
T Consensus       354 a~v~L~p~~  362 (644)
T 3hm6_X          354 ATVALVPCL  362 (644)
T ss_dssp             CEEEEEEC-
T ss_pred             cEEEEEecc
Confidence            999887554

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=85.15  E-value=8  Score=27.32  Aligned_cols=71  Identities=13%  Similarity=0.166  Sum_probs=47.1

Q ss_pred             CCceEEEEEeCC------CCcEEEEEEcCCccHHHHHHHHHhhhC-C----------CCccEEEEECCEEeecccccccc
Q 023198           59 SGVMKLYFKTPS------NEKTFELKANRSDTIENIKFIIEVREG-I----------PVHEYDIYYGGKLIESYITLDVL  121 (286)
Q Consensus        59 ~~~~~i~Vk~~~------~g~~~~l~v~~~~tV~~lK~~I~~~~g-i----------p~~~q~L~~~g~~L~D~~tL~~~  121 (286)
                      .++|.|.|+...      +.....+++....||.+|.+.+..... +          ....-.+.-+|+....     ++
T Consensus         7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~   81 (98)
T 1vjk_A            7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE   81 (98)
T ss_dssp             --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred             cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence            578999999775      134667888778999999999876531 1          0123445667765542     66


Q ss_pred             ccCCCCeEEEEee
Q 023198          122 NINNEDTLQMISV  134 (286)
Q Consensus       122 ~I~~~s~i~l~~~  134 (286)
                      .+++|+.|.++..
T Consensus        82 ~L~dGDeV~i~pp   94 (98)
T 1vjk_A           82 ELKDGDVVGVFPP   94 (98)
T ss_dssp             BCCTTCEEEEESC
T ss_pred             CCCCCCEEEEECC
Confidence            7888998877643

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=84.62  E-value=4.2  Score=34.86  Aligned_cols=68  Identities=16%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEe---cCe--EcCCCCccccCCCCCCCEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVF---KRQ--QLEDDRNLASYKIVNESIVNL  281 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~---~g~--~L~d~~tL~~y~I~~~~~l~l  281 (286)
                      +.+.|..++| ++.+.+++++|+.++-..|+++.|+.... .-|.+   +|.  -|+.++++.+.+++.+....+
T Consensus         2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l   75 (294)
T 1ef1_A            2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF   75 (294)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred             EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence            4677888888 67899999999999999999999997654 34554   233  467788888877655554433

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=84.59  E-value=4  Score=35.43  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEe--cCe--EcCCCCccccCCCCCCCEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVF--KRQ--QLEDDRNLASYKIVNESIV  279 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~--~g~--~L~d~~tL~~y~I~~~~~l  279 (286)
                      +.+.|..++| ++.+.+++++|+.+|-..|+.+.|+.... .-|.|  +|.  -|+.++++.+.+++.+...
T Consensus        23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~   93 (314)
T 1h4r_A           23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV   93 (314)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred             eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence            6788888998 78899999999999999999999998644 34554  333  3778888998876655544

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=84.34  E-value=6.9  Score=25.85  Aligned_cols=64  Identities=19%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      .|+|+|.-..  ....+++....|+.+|.+.+    ++++..-.+..+|.....+.     -+++|+.+.++-..
T Consensus         4 ~m~i~vNg~~--~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V   67 (70)
T 1ryj_A            4 GMKFTVITDD--GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI   67 (70)
T ss_dssp             CEEEEEEETT--EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred             eEEEEEeCcc--CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence            5888887543  34566777888999998875    66777777788888776543     57788888776443

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=84.31  E-value=3.5  Score=39.33  Aligned_cols=62  Identities=21%  Similarity=0.358  Sum_probs=45.8

Q ss_pred             eEEEeecCCcCcHHHHHHHHHHH--hCCCCC------ceEEEe----cCe-EcCCC-------------CccccCCCCCC
Q 023198          223 RYIILEVAKFDTVRDVKDKLFRE--IGQAPD------SQRLVF----KRQ-QLEDD-------------RNLASYKIVNE  276 (286)
Q Consensus       223 ~~~~l~v~~~~tV~~lK~~I~~~--~gi~~~------~q~L~~----~g~-~L~d~-------------~tL~~y~I~~~  276 (286)
                      ..+.+.|...|||.++|++|-+.  .|.|..      ...|-+    .|+ .|.|.             .||++|+|.+|
T Consensus       274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  353 (644)
T 3hm6_X          274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  353 (644)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence            45888999999999999999754  355544      344543    233 45542             58999999999


Q ss_pred             CEEEEEcC
Q 023198          277 SIVNLTDL  284 (286)
Q Consensus       277 ~~l~l~~~  284 (286)
                      +++-|+.+
T Consensus       354 a~v~L~p~  361 (644)
T 3hm6_X          354 ATVALVPC  361 (644)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEec
Confidence            99998765

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=83.74  E-value=3.5  Score=29.06  Aligned_cols=47  Identities=4%  Similarity=0.032  Sum_probs=36.9

Q ss_pred             EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEecCeE
Q 023198          214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFKRQQ  261 (286)
Q Consensus       214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~g~~  261 (286)
                      .|.+. .+|..+.+.++++.+..+|.+++.+.++++..+ ..+.|....
T Consensus         8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe   55 (89)
T 1vd2_A            8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE   55 (89)
T ss_dssp             EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred             EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence            34443 367888899999999999999999999998655 667776554

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=83.61  E-value=0.97  Score=34.35  Aligned_cols=33  Identities=9%  Similarity=0.207  Sum_probs=29.3

Q ss_pred             EEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE
Q 023198           75 FELKANRSDTIENIKFIIEVREGIPVHEYDIYY  107 (286)
Q Consensus        75 ~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~  107 (286)
                      .++.|..+.|+.+++..|.+..|+|+++|||-.
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~   90 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP   90 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence            356777899999999999999999999999954

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=80.79  E-value=3.6  Score=28.56  Aligned_cols=45  Identities=9%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG  109 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g  109 (286)
                      |.|.|..   .-++.+.|.++-+..+|.++|.++.++|++.-.|.|..
T Consensus         6 ~~VKV~~---~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            6 YTLKVHY---KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             EEEEEES---SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             EEEEEEE---EEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            4555543   46899999999999999999999999998888888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	3e-15
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	5e-12
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	3e-08
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	3e-05
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	3e-14
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	4e-11
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	2e-07
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	1e-05
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-13
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-11
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	6e-07
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	3e-05
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-13
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	2e-12
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	1e-06
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	1e-04
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	1e-12
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	3e-10
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	2e-08
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	9e-06
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-12
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-10
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	1e-07
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-04
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	4e-12
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-05
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	6e-05
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	4e-12
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	1e-11
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-08
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	5e-07
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-04
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	1e-11
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	9e-08
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	1e-05
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-04
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	1e-11
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	3e-08
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	2e-06
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	4e-06
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	2e-11
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	7e-09
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	6e-07
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	7e-06
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	2e-11
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	5e-09
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	5e-05
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	8e-05
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-11
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-11
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	8e-09
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-05
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	3e-11
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	4e-09
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-04
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	2e-04
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	4e-11
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	2e-08
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	9e-07
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	7e-04
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	7e-11
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-06
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	1e-04
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	9e-11
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	2e-09
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	2e-07
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	6e-06
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	9e-11
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	6e-10
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-06
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	1e-04
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	1e-10
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	1e-07
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	6e-06
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-10
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	1e-10
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	5e-08
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	4e-06
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	7e-06
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-10
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	1e-08
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	1e-04
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	0.001
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	4e-10
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	1e-09
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	1e-07
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-09
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	3e-09
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	5e-07
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	6e-05
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	1e-09
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	3e-08
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	5e-05
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	2e-09
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	5e-09
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	0.001
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	4e-09
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	6e-04
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	0.002
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-08
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-08
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-08
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	7e-06
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	3e-08
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	3e-07
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	0.002
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	0.004
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	1e-07
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	1e-07
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	7e-05
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	1e-07
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	1e-07
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	2e-07
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	4e-06
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	1e-05
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	0.001
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	3e-07
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	5e-06
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	6e-07
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	1e-04
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	1e-06
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-06
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-05

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 3e-15
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +FVK  +G      +     +  +K ++  + G     Q+L F+ Q L+D   L  Y I 
Sbjct: 10  VFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQ 69

Query: 275 NESIVNL 281
           +   + L
Sbjct: 70  DSDTLIL 76

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 5e-12
 Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 59  SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
           S  ++++ K P    ++    N +  I  +K  IE ++G+P  +  + + G++++ ++ L
Sbjct: 5   SSGIQVFVKNPDG-GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGL 63

Query: 119 DVLNINNEDTLQMI 132
            +  I + DTL + 
Sbjct: 64  GIYGIQDSDTLILS 77

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           ++FV+ P   +    +     +L +K+ +E  +  +P +  +L   G+ LQ+   L  Y 
Sbjct: 9   QVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQ-GLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 199 IKENEVLQIIR 209
           I++++ L + +
Sbjct: 68  IQDSDTLILSK 78

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
            +     I  LK +I  +  + + +   +L + GQ L++ L +  YGI ++  + 
Sbjct: 22 YAINPNSFILGLKQQIEDQ--QGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLI 75

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.5 bits (157), Expect = 3e-14
 Identities = 13/67 (19%), Positives = 34/67 (50%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +FV+  +     +EV    ++  +K+ + +  G   D  R++F  ++L +   + +  + 
Sbjct: 5   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLE 64

Query: 275 NESIVNL 281
            +SIV++
Sbjct: 65  QQSIVHI 71

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (134), Expect = 4e-11
 Identities = 11/71 (15%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M ++ +  S+   F ++ +   +I  +K ++  R+G+P  +  + + GK + +++T+   
Sbjct: 3   MIVFVRFNSS-YGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 122 NINNEDTLQMI 132
           ++  +  + ++
Sbjct: 62  DLEQQSIVHIV 72

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            +FV+  +S    +EV    ++L +K++V   R  +P++   +   G++L N  T+   D
Sbjct: 4   IVFVRFNSSYGFPVEVDSDTSILQLKEVVAK-RQGVPADQLRVIFAGKELPNHLTVQNCD 62

Query: 199 IKENEVLQIIRHVK 212
           +++  ++ I++  +
Sbjct: 63  LEQQSIVHIVQRPR 76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V     I +LK  +  +  + +  D   + +AG++L N LTV +  +   S++H
Sbjct: 17 VEVDSDTSILQLKEVVAKR--QGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVH 70

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I VK L G+ I +++   DT+  +K+++  + G  P  QRL++  +QL DD+    Y I 
Sbjct: 3   IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62

Query: 275 NESIVNL 281
             S+++L
Sbjct: 63  GGSVLHL 69

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M +  KT +  K  E+    +DTI+ IK  +E +EGIP  +  + Y GK +    T    
Sbjct: 1   MLIKVKTLTG-KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY 59

Query: 122 NINNEDTLQMI 132
           NI     L ++
Sbjct: 60  NIEGGSVLHLV 70

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            I V+T T   +++++    T+  +K+ VE  +  IP     L   G+QL + KT   Y+
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDTIDRIKERVEE-KEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 199 IKENEVLQII 208
           I+   VL ++
Sbjct: 61  IEGGSVLHLV 70

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          + ++ T+ I+++K R+  K  E I      L YAG+QL +  T  DY I   SV+H
Sbjct: 15 IDIEPTDTIDRIKERVEEK--EGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLH 68

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 3e-13
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           IFVK L G+ I LEV   DT+ +VK K+  + G  PD QRL+F  +QLED R L+ Y I 
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 275 NESIVNL 281
            ES ++L
Sbjct: 63  KESTLHL 69

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 2e-12
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           M+++ KT +  KT  L+   SDTIEN+K  I+ +EGIP  +  + + GK +E   TL   
Sbjct: 1   MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59

Query: 122 NINNEDTLQMI 132
           NI  E TL ++
Sbjct: 60  NIQKESTLHLV 70

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           +IFV+T T  T+ LEV  + T+ +VK  ++  +  IP +   L   G+QL++ +TL+ Y+
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQ-DKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IKENEVLQII 208
           I++   L ++
Sbjct: 61  IQKESTLHLV 70

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++V+ ++ IE +K +I  K  E I  D   L +AG+QLE+G T+ DY I   S +H
Sbjct: 15 LEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 1e-12
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           I V+   GR    EV    TV  +K ++    G   D   L F+ + LED   L  Y + 
Sbjct: 6   ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK 65

Query: 275 NESIVNL 281
             S V +
Sbjct: 66  PLSTVFM 72

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 3e-10
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           + +  +     ++   +   + T+ ++K  +   EG+    + + + GK +E  + L   
Sbjct: 4   LSILVRNNKG-RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY 62

Query: 122 NINNEDTLQMI 132
            +    T+ M 
Sbjct: 63  GLKPLSTVFMN 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            I V+     +   EVR   TV  +K+ V      +  +   L   G+ L++   L  Y 
Sbjct: 5   SILVRNNKGRSSTYEVRLTQTVAHLKQQVSG-LEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 199 IKENEVLQII 208
           +K    + + 
Sbjct: 64  LKPLSTVFMN 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 9e-06
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
           +V+ T+ +  LK ++     E + +DL  L + G+ LE+ L + +YG+   S + 
Sbjct: 18 YEVRLTQTVAHLKQQVSGL--EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + VK L+ +     V     V++ K+ +   +    + QRL+++ + L+DD+ L  Y + 
Sbjct: 3   VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVG 62

Query: 275 NESI 278
            + I
Sbjct: 63  GKVI 66

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           +++  KT  + +T          ++  K  I     IP  +  + Y G++++    L   
Sbjct: 1   LEVLVKTL-DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 59

Query: 122 NINNEDTLQMI 132
           N+  +  + ++
Sbjct: 60  NVGGK-VIHLV 69

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           E+ V+T  S T    V     V + K+ + +  + IPSE   L   G  LQ+ K L  Y+
Sbjct: 2   EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAA-SVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 199 IKENEVLQIIR 209
           +    +  + R
Sbjct: 61  VGGKVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
            V     +++ K  I A     I  +   L Y G+ L++   + +Y +    VIH
Sbjct: 15 FIVGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIH 67

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQLEDDRNLASYK 272
           + VK+L G    + ++   +V ++K ++ ++IG     QRL        L+D   LAS  
Sbjct: 3   LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 62

Query: 273 IVNESIVNL 281
           +   S V L
Sbjct: 63  LGPGSTVLL 71

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 64  LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY--GGKLIESYITLDVL 121
           L  K       F++  + S ++  +K  I  + G+   +  +     G  ++  + L   
Sbjct: 3   LTVKM-LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 122 NINNEDTLQMI 132
            +    T+ ++
Sbjct: 62  GLGPGSTVLLV 72

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 7/71 (9%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGE-QLQNLKTLAYY 197
           ++ V+    +  ++ +  + +V ++K  +         +           LQ+   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 198 DIKENEVLQII 208
            +     + ++
Sbjct: 62  GLGPGSTVLLV 72

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (142), Expect = 4e-12
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLAS 270
            I VK     Y +  +++ DTV D+K  L    G  P+ Q+L+    K +  E+D  L +
Sbjct: 9   PIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGA 68

Query: 271 YKIVNESIVNL 281
            K+   + + +
Sbjct: 69  LKLKPNTKIMM 79

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREI--------GQAPDSQRLVFKRQQLEDD 265
           ++ + L++G+      +  D+  D+   ++             +P+  RL+++ + L  +
Sbjct: 18  NLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN 77

Query: 266 RNLASYKIVNESIVNL 281
             L + K+       +
Sbjct: 78  VTLGALKLPFGKTTVM 93

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 3e-08
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 56  HNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEV--------REGIPVHEYDIYY 107
           H  + ++ L     S  KT E   + +D+  +I   +           +    +   + Y
Sbjct: 11  HVPADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY 69

Query: 108 GGKLIESYITLDVLNINNEDTLQMISVPKE 137
            G+ +   +TL  L +    T  M  V +E
Sbjct: 70  QGRFLHGNVTLGALKLPFGKTTVMHLVARE 99

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 8/83 (9%)

Query: 133 SVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRIC-------IPSEDCELFRG 184
            VP ++  + +   +  T +       +  D+ K V                    L   
Sbjct: 11  HVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 70

Query: 185 GEQLQNLKTLAYYDIKENEVLQI 207
           G  L    TL    +   +   +
Sbjct: 71  GRFLHGNVTLGALKLPFGKTTVM 93

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 6/62 (9%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLP------ELFYAGQQLENGLTVIDYGIPNNSV 54
                +    +   ++     +  E+         L Y G+ L   +T+    +P    
Sbjct: 31 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT 90

Query: 55 IH 56
            
Sbjct: 91 TV 92

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 12/68 (17%), Positives = 27/68 (39%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            +      G+ + ++    DT+ D+K  +  + G   +   L       +D  +L  Y+I
Sbjct: 30  EVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEI 89

Query: 274 VNESIVNL 281
            +   + L
Sbjct: 90  HDGMNLEL 97

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (111), Expect = 9e-08
 Identities = 12/74 (16%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 59  SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
           + ++++        K   +K N  DTI ++K +I  + G   ++  +     + + +++L
Sbjct: 26  ATMIEVVCNDRLG-KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSL 84

Query: 119 DVLNINNEDTLQMI 132
               I++   L++ 
Sbjct: 85  GDYEIHDGMNLELY 98

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           E+         V+++     T+ D+KK++ + +         L +     ++  +L  Y+
Sbjct: 30  EVVCNDRLGKKVRVKCNTDDTIGDLKKLIAA-QTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 199 IKENEVLQ 206
           I +   L+
Sbjct: 89  IHDGMNLE 96

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          +K    + I  LK  I A+       +   L       ++ +++ DY I +   + 
Sbjct: 43 VKCNTDDTIGDLKKLIAAQ--TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLE 96

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIV 279
           LNG+ ++  +   D V  +K K+    G     Q+L ++   ++D  +LA Y + N +++
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 280 NL 281
           +L
Sbjct: 79  HL 80

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 73  KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
           +        +D +  IK  I    G+P  +  + Y G  I+   +L   N+ N   + + 
Sbjct: 22  QVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLA 81

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 131 MISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQN 190
            + VP    +   +     +   +     V  +K  +      +P+   +L   G  +++
Sbjct: 5   KVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHE-ATGMPAGKQKLQYEGIFIKD 63

Query: 191 LKTLAYYDIKENEVLQII 208
             +LAYY++    V+ + 
Sbjct: 64  SNSLAYYNMANGAVIHLA 81

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
            +  T+++  +K++IH      +     +L Y G  +++  ++  Y + N +VIH
Sbjct: 26 FTLPLTDQVSVIKVKIHEA--TGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIH 79

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQA---PDSQRLVFKRQQLEDDRNLAS 270
           +I +K L  +   + +   +TV+ +K+K+  E G+       Q+L++  + L DD  +  
Sbjct: 4   TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRD 63

Query: 271 YKIVNESIVNL 281
           Y+I  ++ V +
Sbjct: 64  YRIDEKNFVVV 74

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 7e-09
 Identities = 15/74 (20%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG---IPVHEYDIYYGGKLIESYITL 118
           + +  KT   ++TF+++    +T++ +K  IE  +G    PV    + Y GK++   + +
Sbjct: 3   VTITLKTL-QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 119 DVLNINNEDTLQMI 132
               I+ ++ + ++
Sbjct: 62  RDYRIDEKNFVVVM 75

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMR--ICIPSEDCELFRGGEQLQNLKTLAY 196
            I ++T    T K+ +    TV  +K+ +E+ +     P    +L   G+ L +   +  
Sbjct: 4   TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRD 63

Query: 197 YDIKENEVLQII 208
           Y I E   + ++
Sbjct: 64  YRIDEKNFVVVM 75

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 7e-06
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 1  MKVKKTEKIEKLKLRIHAK-VEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          ++++  E ++ LK +I A+   +       +L YAG+ L + + + DY I   + + 
Sbjct: 17 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVV 73

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 215 IFVKLLNGR--YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYK 272
           I V+ ++G     I +V++  T+ +++++++      P+ QRL ++ +QLE+   L  Y 
Sbjct: 3   IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYD 62

Query: 273 IVNESIVNL 281
           +    I+ L
Sbjct: 63  VGLNDIIQL 71

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 5e-09
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 62  MKLYFKTPSNEKTFELKA-NRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDV 120
           M +  +T    KT  ++  +R  TIE ++  +     +      ++Y GK +E+  TL  
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 121 LNINNEDTLQMI 132
            ++   D +Q++
Sbjct: 61  YDVGLNDIIQLL 72

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 141 IFVQTPT---STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYY 197
           I V+T     +    +V R  T+ ++++ V +    +  E   LF  G+QL+N  TL  Y
Sbjct: 3   IQVRTIDGSKTCTIEDVSRKATIEELRERVWA-LFDVRPECQRLFYRGKQLENGYTLFDY 61

Query: 198 DIKENEVLQII 208
           D+  N+++Q++
Sbjct: 62  DVGLNDIIQLL 72

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          V +   IE+L+ R+ A    ++  +   LFY G+QLENG T+ DY +  N +I 
Sbjct: 19 VSRKATIEELRERVWAL--FDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQ 70

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           + ++ K+  +   +E+      T+   K  I    GIPV    + Y GK+++   T++  
Sbjct: 2   LNIHIKSGQD--KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 59

Query: 122 NINNEDTLQMI 132
           +I +  ++ ++
Sbjct: 60  HIQDGHSVHLV 70

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (135), Expect = 3e-11
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           +I +K    ++ +  VA   TV   K+ + +  G    +QRL++  + L+DD+ + SY I
Sbjct: 3   NIHIKSGQDKWEV-NVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHI 61

Query: 274 VNESIVNL 281
            +   V+L
Sbjct: 62  QDGHSVHL 69

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (118), Expect = 8e-09
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 141 IFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIK 200
           I +++     ++ V    TVL  K+ +      IP  +  L   G+ L++ +T+  Y I+
Sbjct: 4   IHIKSGQDKWEVNVAPESTVLQFKEAINK-ANGIPVANQRLIYSGKILKDDQTVESYHIQ 62

Query: 201 ENEVLQIIR 209
           +   + +++
Sbjct: 63  DGHSVHLVK 71

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          + V     + + K  I+      I      L Y+G+ L++  TV  Y I +   +H
Sbjct: 15 VNVAPESTVLQFKEAINKA--NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 68

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 215 IFVKLLNGR--YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYK 272
           I V+ ++GR  + +  +++   V +++ K+       P  QRL ++ +Q+ED   L  Y+
Sbjct: 3   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 62

Query: 273 IVNESIVNL 281
           +     + L
Sbjct: 63  VRLNDTIQL 71

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 4e-09
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 62  MKLYFKTPSNEKTFELKA-NRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDV 120
           M +  +T    +T  + + +R   +E ++  I+    +      ++Y GK +E   TL  
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 121 LNINNEDTLQMI 132
             +   DT+Q++
Sbjct: 61  YEVRLNDTIQLL 72

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 141 IFVQTPT---STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYY 197
           I V+T     +     + R   V ++++ ++     +      LF  G+Q+++  TL  Y
Sbjct: 3   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE-LFHVEPGLQRLFYRGKQMEDGHTLFDY 61

Query: 198 DIKENEVLQII 208
           +++ N+ +Q++
Sbjct: 62  EVRLNDTIQLL 72

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 3  VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          + +  K+E+L+ +I       +   L  LFY G+Q+E+G T+ DY +  N  I 
Sbjct: 19 LSRLTKVEELRRKIQEL--FHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQ 70

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (136), Expect = 4e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK-RQQLEDDRNLASYK 272
           ++ +K LN    +      DTV  +K K F          +L+++ R   +  R L+S  
Sbjct: 9   NVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLN 65

Query: 273 IVNESIVNL 281
           I N  +++ 
Sbjct: 66  ITNNCVIHC 74

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 57  NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYI 116
           + S  + +  K   N+      A   DT+  +K      +   +    IY G  L +   
Sbjct: 3   SGSSGINVRLKFL-NDTEELAVARPEDTVGTLKSKYFPGQESQMKL--IYQGRLLQDPAR 59

Query: 117 TLDVLNINNEDTLQ-MISVPK 136
           TL  LNI N   +    S P 
Sbjct: 60  TLSSLNITNNCVIHCHRSPPG 80

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 9e-07
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
            + ++    +      R   TV  +K      +    S+   +++G       +TL+  +
Sbjct: 9   NVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLN 65

Query: 199 IKENEVLQIIR 209
           I  N V+   R
Sbjct: 66  ITNNCVIHCHR 76

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 7e-04
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQL-ENGLTVIDYGIPNNSVIH 56
             +  + +  LK +          E   +L Y G+ L +   T+    I NN VIH
Sbjct: 22 AVARPEDTVGTLKSKY-----FPGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIH 73

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 7e-11
 Identities = 12/67 (17%), Positives = 29/67 (43%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           +  +L   R  +LE     T R+++ K+    G   +  ++V  ++QL+  + L    + 
Sbjct: 22  LPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVA 81

Query: 275 NESIVNL 281
           +     +
Sbjct: 82  HNVKAMV 88

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 8/67 (11%), Positives = 24/67 (35%)

Query: 70  SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL 129
             ++   L+     T   ++  I    G+  +   I    K ++   TL+   + +    
Sbjct: 27  KKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA 86

Query: 130 QMISVPK 136
            ++ + +
Sbjct: 87  MVLELKQ 93

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 140 EIFVQTPTS---TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAY 196
           E+F+           LE R   T  +++  +      +     ++    +QLQ  KTL  
Sbjct: 19  EVFLPPRLKKDRKNLLETRLHITGRELRSKIA-ETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 197 YDIKENEVLQIIRHVKHS 214
             +  N    ++   + S
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 9e-11
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLF---REIGQAPDSQRLVFKRQQLEDDRNLASY 271
           + +K L  +   +++   +TV+ +K+K+     +       Q+L++  + L DD  L  Y
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62

Query: 272 KIVNESIVNL 281
           KI  ++ V +
Sbjct: 63  KIDEKNFVVV 72

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 2e-09
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVR---EGIPVHEYDIYYGGKLIESYITL 118
           M++  KT    +TF++  +  +T++ +K  IE     +  PV    + Y GK++     L
Sbjct: 1   MQVTLKTLQQ-QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTAL 59

Query: 119 DVLNINNEDTLQMI 132
               I+ ++ + ++
Sbjct: 60  KEYKIDEKNFVVVM 73

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMR--ICIPSEDCELFRGGEQLQNLKTLAY 196
           ++ ++T    T K+++    TV  +K+ +ES +     P    +L   G+ L +   L  
Sbjct: 2   QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKE 61

Query: 197 YDIKENEVLQIIR 209
           Y I E   + ++ 
Sbjct: 62  YKIDEKNFVVVMV 74

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 6e-06
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 1  MKVKKTEKIEKLKLRIHAK-VEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          + +   E ++ LK +I ++  ++       +L YAG+ L +   + +Y I   + + 
Sbjct: 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVV 71

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 9e-11
 Identities = 20/67 (29%), Positives = 31/67 (46%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + ++L  G+ + L V   DTV  +K +L    G  P SQR  F  + L D       KI 
Sbjct: 6   LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIP 65

Query: 275 NESIVNL 281
            + +V +
Sbjct: 66  KDYVVQV 72

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 6e-10
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
            +L  +  +  K  +L    +DT+ ++K  +   EG+       ++ G+ +   +  + L
Sbjct: 4   CQLRLRLSTG-KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEEL 62

Query: 122 NINNEDTLQMI 132
            I  +  +Q+I
Sbjct: 63  KIPKDYVVQVI 73

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
           ++ ++  T   +KL VR   TV  +K+ + +    +       F  G  L +        
Sbjct: 5   QLRLRLSTGKDLKLVVRSTDTVFHMKRRLHA-AEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 199 IKENEVLQII 208
           I ++ V+Q+I
Sbjct: 64  IPKDYVVQVI 73

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          + V+ T+ +  +K R+HA   E +       F++G+ L + +   +  IP + V+ 
Sbjct: 18 LVVRSTDTVFHMKRRLHAA--EGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQ 71

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + VK     +    +A+   VR  K ++ + +    D   L+F  + L D   L+   I
Sbjct: 12  RVSVKTPQDCHEF-FLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGI 70

Query: 274 VNESIVNL 281
           ++ S V++
Sbjct: 71  LDGSTVHV 78

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
            S ++++  KTP +   F L    +  +   K  I            + + GK++     
Sbjct: 7   SSRIIRVSVKTPQDCHEFFLAE--NSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDI 64

Query: 118 LDVLNINNEDTLQMI 132
           L    I +  T+ ++
Sbjct: 65  LSQRGILDGSTVHVV 79

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 140 EIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
            + V+TP    +  +     V   KK +    +   ++   L   G+ L++   L+   I
Sbjct: 12  RVSVKTPQDCHEFFLAENSNVRRFKKQISK-YLHCNADRLVLIFTGKILRDQDILSQRGI 70

Query: 200 KENEVLQII 208
            +   + ++
Sbjct: 71  LDGSTVHVV 79

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           S+ VK    ++  +E+   +     K +LF   G  P  Q+++ K   L+DD +  + K+
Sbjct: 9   SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKM 67

Query: 274 VNESIVNL 281
            N   V +
Sbjct: 68  KNGMTVLM 75

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 214 SIFVKLLNGRY--IILEVAKFDTVRDVKDKLFREIGQ--APDSQRLVFKRQQLEDDRNLA 269
           ++ VK  N R+  + L   +  +V  +K  L R   +   P+ QRL++  + L D + L 
Sbjct: 9   TLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLR 68

Query: 270 SYKIVNES 277
                 E 
Sbjct: 69  DLLPKQEK 76

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 57  NDSGVMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREG--IPVHEYDIYYGGKLIE 113
           + S  + L  K+P+      EL  +R  ++ ++K  +           +  + Y GKL+ 
Sbjct: 3   SGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL 62

Query: 114 SYITLDVLNINNED--TLQMISVPK 136
            +  L  L    E    L ++   K
Sbjct: 63  DHQCLRDLLPKQEKRHVLHLVCNVK 87

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 2  KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNS--VIH 56
             +   +  LK  +     E    +   L Y+G+ L +   + D         V+H
Sbjct: 25 SGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLH 81

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 141 IFVQTPTS---TVKLEVRRAHTVLDVKKMVESMR-ICIPSEDCELFRGGEQLQNLKTLAY 196
           + V++P      ++L   R  +V  +K  +  +       ED  L   G+ L + + L  
Sbjct: 10  LLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRD 69

Query: 197 YDIKENE 203
              K+ +
Sbjct: 70  LLPKQEK 76

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (131), Expect = 2e-10
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 16/84 (19%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQR---------------LVFK 258
           ++ V  ++G  + + V +  TV D+K  + R +    + +                L   
Sbjct: 9   TVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA 68

Query: 259 RQQLEDDRN-LASYKIVNESIVNL 281
            ++L +DR  L  Y I N   V+ 
Sbjct: 69  GEKLTEDRKKLRDYGIRNRDEVSF 92

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 17/92 (18%)

Query: 57  NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV---------------- 100
           + S  M +      + +   +   ++ T+ ++K  I+    +                  
Sbjct: 3   SGSSGMTVRVCK-MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWR 61

Query: 101 HEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
             +    G KL E    L    I N D +  I
Sbjct: 62  TYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFI 93

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 16/88 (18%)

Query: 141 IFVQTPT-STVKLEVRRAHTVLDVKKMVE--------------SMRICIPSEDCELFRGG 185
           + V       + + V +  TVLD+KK ++               +          L   G
Sbjct: 10  VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 69

Query: 186 EQLQNLK-TLAYYDIKENEVLQIIRHVK 212
           E+L   +  L  Y I+  + +  I+ + 
Sbjct: 70  EKLTEDRKKLRDYGIRNRDEVSFIKKLG 97

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 2  KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGL-TVIDYGIPNNSVIH 56
           +++  ++++ +      +    +     L  AG++L      + DYGI N   + 
Sbjct: 36 AIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVS 91

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 4e-10
 Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
           +  ++K+  KTP  ++ F +    + +++  K  I  R      +  + + GK+++   T
Sbjct: 29  EPKIIKVTVKTPKEKEEFAV--PENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDT 86

Query: 118 LDVLNINNEDTLQMI 132
           L    I++  T+ ++
Sbjct: 87  LIQHGIHDGLTVHLV 101

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
           + VK    +     V +  +V+  K+ + +      D   L+F  + L+D   L  + I 
Sbjct: 35  VTVKTPKEKEEF-AVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIH 93

Query: 275 NESIVNL 281
           +   V+L
Sbjct: 94  DGLTVHL 100

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 126 EDTLQMISVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGG 185
           + +    + PK ++ + V+TP    +  V    +V   K+ +   R    ++   L   G
Sbjct: 21  QGSAAAPAEPKIIK-VTVKTPKEKEEFAVPENSSVQQFKEAISK-RFKSQTDQLVLIFAG 78

Query: 186 EQLQNLKTLAYYDIKENEVLQII 208
           + L++  TL  + I +   + ++
Sbjct: 79  KILKDQDTLIQHGIHDGLTVHLV 101

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 215 IFVKLLNGRYII-LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           +F+ +   +  I  +  +  TV ++K  +   + + PD QRL    Q L+D + L     
Sbjct: 2   VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGF 61

Query: 274 VNES 277
            +++
Sbjct: 62  TSQT 65

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 3e-09
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 64  LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNI 123
           ++     ++ T    A  S T+  +K I+E     P  E  +Y   +L++   TL     
Sbjct: 2   VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGF 61

Query: 124 N-------NEDTLQMISVPKELQEIFVQTPTST 149
                      T+ +     +  E     P S+
Sbjct: 62  TSQTARPQAPATVGLAFRADDTFEALCIEPFSS 94

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 5e-07
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 140 EIFVQTPT--STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYY 197
           ++F+      +T+  + + + TV ++K++VE   +  P ++  L++  + L + KTL   
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEG-ILKRPPDEQRLYKDDQLLDDGKTLGEC 59

Query: 198 DIKEN 202
                
Sbjct: 60  GFTSQ 64

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 1  MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSG 60
             K++  + +LK  +      +   D   L+   Q L++G T+ + G  + +       
Sbjct: 15 TDAKESSTVFELKRIVEGI--LKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA 72

Query: 61 VMKLYFKTPSNEKTFEL 77
           + L F+     +   +
Sbjct: 73 TVGLAFRADDTFEALCI 89

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + VK    +     V    T++ +K+++ +     PD   L+F  + L+D  +LA   +
Sbjct: 9   KVTVKTPKDKEDF-SVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 67

Query: 274 VNESIVNL 281
            +   V+L
Sbjct: 68  RDGLTVHL 75

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 59  SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
             ++K+  KTP +++ F +    + TI+ +K  I  R      +  + + GK+++   +L
Sbjct: 5   PHLIKVTVKTPKDKEDFSV--TDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL 62

Query: 119 DVLNINNEDTLQMI 132
               + +  T+ ++
Sbjct: 63  AQCGVRDGLTVHLV 76

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 135 PKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTL 194
           P  ++ + V+TP       V    T+  +K+ +   R     +   L   G+ L++  +L
Sbjct: 5   PHLIK-VTVKTPKDKEDFSVTDTCTIQQLKEEISQ-RFKAHPDQLVLIFAGKILKDPDSL 62

Query: 195 AYYDIKENEVLQII 208
           A   +++   + ++
Sbjct: 63  AQCGVRDGLTVHLV 76

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK-RQQLEDDRNLASYK 272
               + L      L+V     + + +     E G   +  ++V+  +   +D  +L SY 
Sbjct: 13  YCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYG 72

Query: 273 IVNESIVNL 281
           + +  +V L
Sbjct: 73  LKDGDMVVL 81

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (121), Expect = 5e-09
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 57  NDSGVMKL----YFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLI 112
           + S  M +      +    E TF L+ N    + N + + E+  G+P  E  I Y  +L+
Sbjct: 3   SGSSGMLITVYCVRRD-LTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLL 61

Query: 113 -ESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTS 148
            + + +L    + + D + ++           +TP+ 
Sbjct: 62  TDDHCSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 8/61 (13%), Positives = 25/61 (40%)

Query: 149 TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208
           T  L+V     + + + + E        E   ++       +  +L  Y +K+ +++ ++
Sbjct: 23  TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLL 82

Query: 209 R 209
           +
Sbjct: 83  Q 83

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.7 bits (121), Expect = 4e-09
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 212 KHSIFVKLLNGRYII-LEVAKFDTVRDVKDKLFRE-------IGQAPDSQRLVFKRQQLE 263
           +  I  +L +G  I         TV  +K+ +  E         +     +L+   + LE
Sbjct: 7   QLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE 66

Query: 264 DDRNLASYKIVNESI 278
           + + +  Y+    ++
Sbjct: 67  NSKTVKDYRSPVSNL 81

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIE-----VREGIP--VHEYDIYYGGKLIES 114
           +++ F+              + T+  +K  +       +E  P  V E  +   GK++E+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 115 YITLDVLNINNEDTLQMISV 134
             T+        +    ++ 
Sbjct: 68  SKTVKDYRSPVSNLAGAVTT 87

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 1  MKVKKTEKIEKLKLRIHAK--VEEEILEDLPE---LFYAGQQLENGLTVIDYGIPNNSVI 55
                  +  LK  + ++   E+E      +   L  AG+ LEN  TV DY  P +++ 
Sbjct: 23 KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 82

Query: 56 HNDSGVMKLYFKTPSNEK 73
             +  M +  + P  EK
Sbjct: 83 GAVT-TMHVIIQAPVTEK 99

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 214 SIFVK-LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ-------LEDD 265
            +F+   LN        ++  T+ + K KL   +G       L              ++D
Sbjct: 9   MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQED 68

Query: 266 RNLASYKIVNESIVNLTD 283
             L SY + +   +++ D
Sbjct: 69  ALLGSYPVDDGCRIHVID 86

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK------- 110
            S  + ++  +  N    E + +RS TI   K  +E+  G P    ++   G        
Sbjct: 4   GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSK 63

Query: 111 LIESYITLDVLNINNEDTLQMI 132
           L +    L    +++   + +I
Sbjct: 64  LDQEDALLGSYPVDDGCRIHVI 85

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
            + V    G+ + ++    D+V D K  L  +IG  P+   L      L+D  +L  Y++
Sbjct: 3   EVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEV 62

Query: 274 VNESIVNL 281
            +++ + L
Sbjct: 63  HDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (95), Expect = 7e-06
 Identities = 10/70 (14%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           +++        K   +K    D++ + K ++ ++ G   ++  +  GG +++ +I+L+  
Sbjct: 2   IEVVVNDRLG-KKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 60

Query: 122 NINNEDTLQM 131
            ++++  L++
Sbjct: 61  EVHDQTNLEL 70

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 233 DTVRDVKDKL---FREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
            ++  +K  +    +E    P+   L++  ++L+DD+ L  Y I   S V++
Sbjct: 38  YSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHV 89

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6  TEKIEKLKLRIHAKVEEEILE-DLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
             I  LK  I  K++E + + +L +L Y G++L++  T+  YGI   S +H
Sbjct: 37 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVH 88

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 12/71 (16%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 141 IFVQTPTSTVKLEVRRAHTVLDVKKMV-ESMRICIPSEDC-ELFRGGEQLQNLKTLAYYD 198
             +Q P + +       +++  +K+++   ++  +P  +  +L   G +L++ +TL +Y 
Sbjct: 21  SILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG 80

Query: 199 IKENEVLQIIR 209
           I+    + ++R
Sbjct: 81  IQPGSTVHVLR 91

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 63  KLYFKTPSNEKTFELKANRSDTIENIKFIIEVR--EGIPVHE-YDIYYGGKLIESYITLD 119
           K   + P  E      +    +I  +K +I  +  E +P  E  D+ Y G+ ++   TLD
Sbjct: 20  KSILQLPETEL--GEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLD 77

Query: 120 VLNINNEDTLQMI 132
              I    T+ ++
Sbjct: 78  FYGIQPGSTVHVL 90

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 58  DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117
             G   +  K   N+   ++K     T   +K  I    G+P     + Y G + E   T
Sbjct: 12  GVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDK-T 70

Query: 118 LDVLNINNEDTLQMI 132
           L  + + +   + ++
Sbjct: 71  LREIKVTSGAKIMVV 85

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 215 IFVKLL-NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
           + +K++ N     ++V    T  ++K K+    G  P  Q++++K     +D+ L   K+
Sbjct: 18  VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLV-PEDKTLREIKV 76

Query: 274 VNESIVNL 281
            + + + +
Sbjct: 77  TSGAKIMV 84

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (90), Expect = 7e-05
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 133 SVPKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLK 192
            V KEL ++ +    +   ++V    T  ++K+ + S+    P+           +   K
Sbjct: 12  GVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQK--VMYKGLVPEDK 69

Query: 193 TLAYYDIKENEVLQII 208
           TL    +     + ++
Sbjct: 70  TLREIKVTSGAKIMVV 85

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 10/78 (12%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 56  HNDSGVMKLYFKTPSNEKTFELKAN-RSDTIENIKFIIEVREGIPVHEYDIYYGGKLIES 114
           H     +++     ++ +  E+     S+ + ++K  I     IP ++  +      ++ 
Sbjct: 24  HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKD 83

Query: 115 YITLDVLNINNEDTLQMI 132
            ++L   N+   + L + 
Sbjct: 84  NMSLAHYNVGAGEILTLS 101

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 214 SIFVKLL-NGRYIILEVAKF-DTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASY 271
            +      +G+++ + V    + V  +K+K+  EI    + Q+L  K   L+D+ +LA Y
Sbjct: 31  RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHY 90

Query: 272 KIVNESIVNL 281
            +    I+ L
Sbjct: 91  NVGAGEILTL 100

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 10/66 (15%), Positives = 24/66 (36%)

Query: 67  KTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNE 126
           K          K  ++  +  +      R+G  +      Y G  I++  T + L++ + 
Sbjct: 8   KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDN 67

Query: 127 DTLQMI 132
           D ++  
Sbjct: 68  DIIEAH 73

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 9/61 (14%), Positives = 25/61 (40%)

Query: 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVN 280
               I  ++ K   +R + +   +  G+  DS R ++   +++ D+      + +  I+ 
Sbjct: 12  GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIE 71

Query: 281 L 281
            
Sbjct: 72  A 72

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 2  KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
          K+KKT  + +L      +  +    D     Y G +++   T  D  + +N +I 
Sbjct: 19 KIKKTTPLRRLMEAFAKR--QGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIE 71

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 9/74 (12%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 135 PKELQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTL 194
           P+    + V   +S +  ++++   +  + +     +         L+  G ++Q  +T 
Sbjct: 1   PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD-GIRIQADQTP 59

Query: 195 AYYDIKENEVLQII 208
              D+++N++++  
Sbjct: 60  EDLDMEDNDIIEAH 73

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE--------DDRNLASY 271
              + +  ++    TV+ VK  L R +        L ++  ++         D + L  Y
Sbjct: 20  PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFY 79

Query: 272 KIVNESIVNLTDLG 285
            + N   + +   G
Sbjct: 80  SVENGDCLLVRWSG 93

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 59  SGVMKLYFKTPS--NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYI 116
             ++ L  K  +    +  E +   S T++ +K ++     +PV E  + Y    +    
Sbjct: 7   GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGRE 66

Query: 117 --------TLDVLNINNEDTLQMIS 133
                    L   ++ N D L +  
Sbjct: 67  IELENDLQPLQFYSVENGDCLLVRW 91

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 214 SIFVKLLNGRYII----LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQL-EDDRNL 268
           ++ V   N ++ +     + +    V+D+   +   IG     Q+L+FK + L E +  L
Sbjct: 3   TVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPL 62

Query: 269 ASYKIVNESIVNL 281
           ++  I +   V L
Sbjct: 63  SALGIQDGCRVML 75

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 62  MKLYFKTPSNEKTFELKA---NRSDTIENIKFIIEVREGIPVHEYDIYYGGK-LIESYIT 117
           + +     + +    + +   +    ++++  ++E   G+P     + + GK L E    
Sbjct: 2   LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61

Query: 118 LDVLNINNEDTLQMI 132
           L  L I +   + +I
Sbjct: 62  LSALGIQDGCRVMLI 76

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 62  MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
           +KL      +      K   +  ++ +K     R+G+P++     + G+ I    T   L
Sbjct: 3   IKLKVIGQDS-SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61

Query: 122 NINNEDTLQM 131
            +  ED +++
Sbjct: 62  GMEEEDVIEV 71

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 229 VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ-------LEDDRNLASYKIVNESIVNL 281
                ++ D+K KL   +G   DS R+              +  ++L    + +   ++ 
Sbjct: 22  YPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 81

Query: 282 TDL 284
            D+
Sbjct: 82  VDV 84

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 7/81 (8%)

Query: 59  SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK-------L 111
           + V  L   T + +   E K     ++ ++K  +E+  G  V    I            L
Sbjct: 2   TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGEL 61

Query: 112 IESYITLDVLNINNEDTLQMI 132
            +   +L  L + +   +  +
Sbjct: 62  TDGAKSLKDLGVRDGYRIHAV 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.87
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.85
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.85
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.85
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.84
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.84
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.84
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.83
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.83
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.82
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.82
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.82
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.81
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.81
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.81
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.8
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.8
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.79
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.79
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.79
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.78
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.78
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.78
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.77
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.77
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.76
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.76
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.76
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.73
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.73
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.72
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.71
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.71
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.71
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.7
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.7
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.68
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.68
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.68
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.66
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.66
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.66
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.65
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.65
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.64
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.64
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.63
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.63
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.61
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.61
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.6
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.59
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.58
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.58
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.57
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.57
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.56
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.54
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.46
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.45
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.41
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.4
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.4
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.4
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.38
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.28
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.27
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.27
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.27
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.13
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.43
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.1
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	98.01
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.61
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.25
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.73
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	96.62
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	96.51
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.42
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.72
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	95.08
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.67
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	91.45
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	86.47
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	86.23
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	85.04
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	85.02
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	82.82
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	81.38
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	80.82

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.1e-22  Score=142.04  Aligned_cols=76  Identities=16%  Similarity=0.433  Sum_probs=74.4

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      +|+||||+.+ |++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++|+|+++.|++|
T Consensus         2 ~M~I~Vk~~~-g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNS-SYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSS-SSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCC-CCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            6999999999 999999999999999999999999999999999999999999999999999999999999999986

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.7e-22  Score=138.35  Aligned_cols=76  Identities=37%  Similarity=0.513  Sum_probs=74.4

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      |+|+||+++ |++++++|++++||++||++|+.+.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||
T Consensus         1 MqI~Vk~l~-G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETT-SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCC-CCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            799999999 9999999999999999999999999999999999999999999999999999999999999999886

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=1.4e-21  Score=136.23  Aligned_cols=73  Identities=30%  Similarity=0.415  Sum_probs=71.3

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      |+|+||+++ |++++++|++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|+|.+|+++++++|+
T Consensus         1 M~I~Vk~~~-G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLT-GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            789999999 9999999999999999999999999999999999999999999999999999999999999875

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.6e-21  Score=135.90  Aligned_cols=75  Identities=13%  Similarity=0.190  Sum_probs=72.6

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ..|+|+||+++ |++++++|++++||+++|++|++++|+|+++|+|+|+|+.|+|+++|++|||.+|+++++++|+
T Consensus         2 ~~~qi~Vk~~~-G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCC-CCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            46999999999 9999999999999999999999999999999999999999999999999999999999999874

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-21  Score=139.94  Aligned_cols=79  Identities=20%  Similarity=0.414  Sum_probs=75.8

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ...|+|+||+++ |++++++|++++||.+||++|++++|||+++|+|+|+|++|+|+.+|++|+|.++++|+|+.+.+++
T Consensus         5 s~~mqI~Vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~g   83 (87)
T d1wh3a_           5 SSGIQVFVKNPD-GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             SSSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             CCcEEEEEECCC-CCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCC
Confidence            357999999999 9999999999999999999999999999999999999999999999999999999999999998765

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=2.9e-21  Score=134.58  Aligned_cols=72  Identities=31%  Similarity=0.483  Sum_probs=70.4

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||+++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++||++.|
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlr   72 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA   72 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEee
Confidence            689999999999999999999999999999999999999999999999999999999999999999999876

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.9e-21  Score=136.12  Aligned_cols=73  Identities=18%  Similarity=0.314  Sum_probs=71.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |.|+||+.+|++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.||++|+|++|++||++.|.
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~   75 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP   75 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESS
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEecc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999874

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.2e-21  Score=134.35  Aligned_cols=72  Identities=29%  Similarity=0.260  Sum_probs=70.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||+.|
T Consensus         4 ~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lR   75 (76)
T d1z2ma2           4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   75 (76)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-20  Score=131.35  Aligned_cols=73  Identities=21%  Similarity=0.242  Sum_probs=70.0

Q ss_pred             eEEEEEeCCCCc-EEEEE-EcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           62 MKLYFKTPSNEK-TFELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        62 ~~i~Vk~~~~g~-~~~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      |+|+||+++ |+ +++++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++++|++|.
T Consensus         1 M~I~Vktl~-Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMD-GRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETT-SSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCC-CCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            899999999 86 89986 899999999999999999999999999999999999999999999999999999875

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=136.12  Aligned_cols=73  Identities=22%  Similarity=0.266  Sum_probs=71.2

Q ss_pred             eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .|+|+||+++|++++++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.||.+|+|++|++|||+.|
T Consensus         7 ~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r   79 (87)
T d1wh3a_           7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEec
Confidence            3899999999999999999999999999999999999999999999999999999999999999999999976

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.4e-20  Score=130.59  Aligned_cols=73  Identities=23%  Similarity=0.297  Sum_probs=69.9

Q ss_pred             eEEEEEeCCCC-cEEEE-EEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           62 MKLYFKTPSNE-KTFEL-KANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        62 ~~i~Vk~~~~g-~~~~l-~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      |+|+|++++ | +++++ +|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||.+|++++|++||
T Consensus         1 M~I~Vk~l~-G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTID-GSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETT-CSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCC-CCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            899999999 8 68888 5999999999999999999999999999999999999999999999999999999886

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=130.74  Aligned_cols=72  Identities=22%  Similarity=0.404  Sum_probs=68.9

Q ss_pred             eEEEEEeecce-EEEee-cCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGR-YIILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~-~~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||+++|+ +++++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.|
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r   74 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR   74 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEE
Confidence            78999999996 88885 99999999999999999999999999999999999999999999999999999886

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-20  Score=132.48  Aligned_cols=76  Identities=17%  Similarity=0.310  Sum_probs=73.1

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      .++|+||+.+ |++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++++|+|+++.+.
T Consensus         3 e~qi~Vk~~~-G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p~   78 (80)
T d1ttna1           3 ECQLRLRLST-GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV   78 (80)
T ss_dssp             SEEEEEEETT-TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             eEEEEEEcCC-CCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            6899999999 999999999999999999999999999999999999999999999999999999999999987653

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.3e-20  Score=130.91  Aligned_cols=72  Identities=46%  Similarity=0.657  Sum_probs=70.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|+||+++|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|+.|
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~r   72 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            689999999999999999999999999999999999999999999999999999999999999999999865

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.3e-20  Score=129.23  Aligned_cols=73  Identities=22%  Similarity=0.435  Sum_probs=69.6

Q ss_pred             eEEEEEeecc-eEEEe-ecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNG-RYIIL-EVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g-~~~~l-~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |.|+||+++| +++++ .|++++||++||.+|++++|+|+++|+|+|+|++|+|+.||++|||++|++|||+.|+
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            7899999999 57887 5999999999999999999999999999999999999999999999999999999885

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.3e-20  Score=130.76  Aligned_cols=72  Identities=28%  Similarity=0.376  Sum_probs=70.0

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|+||+.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|||+.+
T Consensus         4 ~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~   75 (80)
T d1ttna1           4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS   75 (80)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEec
Confidence            789999999999999999999999999999999999999999999999999999999999999999999764

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-20  Score=131.18  Aligned_cols=72  Identities=15%  Similarity=0.292  Sum_probs=69.0

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      |+|+||+++ |++++++|++++||+++|++|+++.|+|+++|||+|+|+.|+|+++|++|+| ++++++|+.+.
T Consensus         1 m~I~Vk~~~-g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLD-SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTT-SCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCC-CCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            789999999 9999999999999999999999999999999999999999999999999999 58999988764

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-20  Score=130.32  Aligned_cols=72  Identities=21%  Similarity=0.449  Sum_probs=69.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |+|+||+++|+++.++|++++||++||++|++++|+|+++|||+|+|+.|+|+++|++|+| ++++|||+.|.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            6899999999999999999999999999999999999999999999999999999999999 58999998874

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=5.6e-20  Score=127.77  Aligned_cols=70  Identities=23%  Similarity=0.291  Sum_probs=68.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      ++|+||+.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            6799999999999999999999999999999999999999999999999999999999999999999985

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-19  Score=127.29  Aligned_cols=72  Identities=26%  Similarity=0.261  Sum_probs=69.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe--cCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +++.||+++|+++.++|++++||++||++|++++|+|+++|+|+|  +|+.|+|+.||++|||++|++|+|+.+
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEE
Confidence            368999999999999999999999999999999999999999999  799999999999999999999999875

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.2e-19  Score=126.05  Aligned_cols=71  Identities=14%  Similarity=0.329  Sum_probs=69.0

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      |+|+|++.+ |+++.++|+|++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++|..
T Consensus         2 i~i~vk~~~-Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRL-GKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETT-TEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCC-CCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEEE
Confidence            789999999 99999999999999999999999999999999999999999999999999999999999863

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-19  Score=126.01  Aligned_cols=73  Identities=14%  Similarity=0.221  Sum_probs=69.9

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE--CCEEeeccccccccccCCCCeEEEEeec
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY--GGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ++|+||+++ |++++++|++++||+++|++|++++|+|+++|+|+|  +|+.|+|+.+|++|||.+|++++|+++.
T Consensus         1 ~~l~Vk~l~-G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           1 WDLTVKMLA-GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             CEEEEEESS-SCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEEC
Confidence            579999999 999999999999999999999999999999999999  7999999999999999999999998763

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.6e-19  Score=123.15  Aligned_cols=71  Identities=27%  Similarity=0.348  Sum_probs=67.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|.||+ .++++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus         2 i~I~Vk~-~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEe-CCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            6788997 4567999999999999999999999999999999999999999999999999999999999875

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.3e-19  Score=131.59  Aligned_cols=88  Identities=15%  Similarity=0.150  Sum_probs=79.5

Q ss_pred             cccCCCCCceeee-e------CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccc
Q 023198           45 IDYGIPNNSVIHN-D------SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT  117 (286)
Q Consensus        45 ~~y~i~~~s~l~l-~------~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~t  117 (286)
                      ++|+.+..|.=.+ +      ...++|+|++.. |+++.++|+|++||++||++|++++|+|+++|+|+|+|+.|+|+.+
T Consensus         5 ~~~~~~~ss~~~~~p~~~~~~~~~i~V~V~~~~-Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t   83 (100)
T d1uh6a_           5 SHHHHHHSSGASLVPRGSEGAATMIEVVCNDRL-GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVS   83 (100)
T ss_dssp             CCCCCCCCCCCSSCCCCCSSCCCEEEEEEECSS-SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCB
T ss_pred             cccccccCCcccccCCCCCCCCceEEEEEECCC-CCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCC
Confidence            5677777777555 1      124799999999 9999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCeEEEEe
Q 023198          118 LDVLNINNEDTLQMIS  133 (286)
Q Consensus       118 L~~~~I~~~s~i~l~~  133 (286)
                      |++|+|.+|++|+|.+
T Consensus        84 L~dygI~~GstI~L~~   99 (100)
T d1uh6a_          84 LGDYEIHDGMNLELYY   99 (100)
T ss_dssp             HHHHTCCTTEEEEEEC
T ss_pred             HHHcCCCCCCEEEEEE
Confidence            9999999999999875

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=6.8e-19  Score=122.29  Aligned_cols=72  Identities=19%  Similarity=0.423  Sum_probs=67.9

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      +|+|+|++.  ++++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++|+.+
T Consensus         1 si~I~Vk~~--~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSG--QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEET--TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeC--CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            478999986  478999999999999999999999999999999999999999999999999999999999864

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.1e-19  Score=131.83  Aligned_cols=72  Identities=17%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|+|++.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|..+
T Consensus        29 i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEEC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999754

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=127.56  Aligned_cols=75  Identities=23%  Similarity=0.454  Sum_probs=70.9

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhC---CCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG---IPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      |+|+||++. |++++++|++++||++||++|+++.|   +|+++|+|+|+|+.|+|+.+|++|||.++++|+++++.+.
T Consensus         1 M~I~vk~~~-g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKTLQ-QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETT-CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCC-CCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCC
Confidence            799999999 99999999999999999999999875   8999999999999999999999999999999999887543

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=123.99  Aligned_cols=76  Identities=17%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      ..|+|+|++.+  .+++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+++|++|||.+|++|+|+++.+.
T Consensus         6 ~~i~I~Vkt~~--~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           6 HLIKVTVKTPK--DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             TEEEEEEECSS--CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CEEEEEEEcCC--CcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            46999999975  46899999999999999999999999999999999999999999999999999999999988754

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.2e-19  Score=123.81  Aligned_cols=72  Identities=21%  Similarity=0.457  Sum_probs=69.2

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhC---CCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG---IPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS  133 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~  133 (286)
                      .|+|+||+++ |++++++|++++||++||++|+++.|   +|+++|||+|+|+.|+|+.+|++|||.+++++.+++
T Consensus         2 ~~~i~vk~l~-g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQ-QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETT-TEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCC-CCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            5899999999 99999999999999999999999987   999999999999999999999999999999998875

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-18  Score=126.81  Aligned_cols=72  Identities=25%  Similarity=0.380  Sum_probs=68.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhC---CCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG---QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||+++|+++.++|++++||++||++|+++.|   +|+++|||+|+|+.|+|+.||++|||++|++|+|+.+
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~   75 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT   75 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEEC
Confidence            68999999999999999999999999999999986   8999999999999999999999999999999998764

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.6e-19  Score=123.34  Aligned_cols=71  Identities=24%  Similarity=0.344  Sum_probs=68.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhC---CCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG---QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      |+|+||+++|+++.++|++++||++||++|+++.|   +|+++|||+|+|+.|+|+.||++|||++|++|+++.
T Consensus         3 ~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            68999999999999999999999999999999988   999999999999999999999999999999998863

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.1e-18  Score=123.05  Aligned_cols=72  Identities=21%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |+|+||+.++ ++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+.|.
T Consensus         8 i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~   79 (84)
T d1yqba1           8 IKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR   79 (84)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             EEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECC
Confidence            8899999765 57999999999999999999999999999999999999999999999999999999999874

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.3e-18  Score=121.25  Aligned_cols=68  Identities=18%  Similarity=0.290  Sum_probs=65.6

Q ss_pred             CCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           69 PSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        69 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      ++ |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|+++.+|
T Consensus        19 L~-G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LN-GQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CS-SCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cC-CeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            45 999999999999999999999999999999999999999999999999999999999999999875

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=1.2e-18  Score=130.35  Aligned_cols=76  Identities=12%  Similarity=0.182  Sum_probs=69.5

Q ss_pred             EEEEEeCCCCcEEEEEEcC-CccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           63 KLYFKTPSNEKTFELKANR-SDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        63 ~i~Vk~~~~g~~~~l~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      +|+|+...+|++++++|.+ ++||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|+++++||
T Consensus        31 ~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG  107 (111)
T d1we6a_          31 RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             EECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             EEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCC
Confidence            3444444349999999987 999999999999999999999999999999999999999999999999999999987

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-17  Score=123.38  Aligned_cols=71  Identities=20%  Similarity=0.202  Sum_probs=67.6

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|.||+.++ ++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.|
T Consensus        33 i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          33 IKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             EEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             EEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            8899998765 5789999999999999999999999999999999999999999999999999999999976

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-17  Score=119.56  Aligned_cols=65  Identities=25%  Similarity=0.441  Sum_probs=62.9

Q ss_pred             ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||+.|
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r   83 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALK   83 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEES
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEe
Confidence            57999999999999999999999999999999999999999999999999999999999999765

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=4.7e-18  Score=120.92  Aligned_cols=72  Identities=21%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      |+|.||+++++ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.|.
T Consensus        11 i~v~Vk~~~~~-~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1          11 IRVSVKTPQDC-HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             EEEEEECSSSE-EEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             EEEEEEcCCCc-EEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            88999997655 6899999999999999999999999999999999999999999999999999999999875

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=3.1e-17  Score=119.50  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=71.4

Q ss_pred             CCceEEEEEeCCCCcEE-EEEEcCCccHHHHHHHHHhh-----hCCC--CccEEEEECCEEeeccccccccccCCCC---
Q 023198           59 SGVMKLYFKTPSNEKTF-ELKANRSDTIENIKFIIEVR-----EGIP--VHEYDIYYGGKLIESYITLDVLNINNED---  127 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~D~~tL~~~~I~~~s---  127 (286)
                      ...|.|+||+++ |+.+ ++.+++++||.+||++|++.     .|+|  +++|||+|+|+.|+|+.||++|+|..|+   
T Consensus         5 ~~~i~I~~r~~~-G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~   83 (101)
T d1se9a_           5 HNQLEIKFRLTD-GSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG   83 (101)
T ss_dssp             CCCEEEEEEETT-SCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred             cceEEEEEEeCC-CCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCC
Confidence            357899999999 9987 69999999999999999875     6898  7899999999999999999999999997   


Q ss_pred             ---eEEEEeeccc
Q 023198          128 ---TLQMISVPKE  137 (286)
Q Consensus       128 ---~i~l~~~~~~  137 (286)
                         ++||++|++.
T Consensus        84 ~~~tmHlVvrpp~   96 (101)
T d1se9a_          84 AVTTMHVIIQAPV   96 (101)
T ss_dssp             CCEEEEEEECCCS
T ss_pred             CceEEEEEeCCCC
Confidence               9999998764

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.3e-17  Score=121.25  Aligned_cols=74  Identities=20%  Similarity=0.285  Sum_probs=69.2

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      +..|+|+|+++. + .+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|++|
T Consensus        30 ~~~i~V~Vk~~~-~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          30 PKIIKVTVKTPK-E-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCEEEEEECSS-C-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CCeEEEEEECCC-c-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            346999999976 4 5899999999999999999999999999999999999999999999999999999999875

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=7.6e-18  Score=119.81  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=68.9

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198           59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      .+.|+|+|++++  ..+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|++|
T Consensus         8 ~~~i~v~Vk~~~--~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           8 SRIIRVSVKTPQ--DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             SCEEEEEEECSS--SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             CCeEEEEEEcCC--CcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            347999999975  45699999999999999999999999999999999999999999999999999999999876

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.3e-17  Score=121.51  Aligned_cols=78  Identities=21%  Similarity=0.346  Sum_probs=71.5

Q ss_pred             CceEEEE----EeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEee-ccccccccccCCCCeEEEEee
Q 023198           60 GVMKLYF----KTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIE-SYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        60 ~~~~i~V----k~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      ++|.|+|    +..+ |.+++++|++++||++||+.|+.++|+|+++|+|+|+|+.|. |+.+|++|||.+|++|+|+.+
T Consensus         6 ~~m~itV~~~~~~~~-~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           6 SGMLITVYCVRRDLT-EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             CCEEEEEEECCCCCC-CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             CCEEEEEEecccCCC-CCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            4799999    6677 899999999999999999999999999999999999999995 678999999999999999877


Q ss_pred             cccc
Q 023198          135 PKEL  138 (286)
Q Consensus       135 ~~~~  138 (286)
                      ...+
T Consensus        85 ~~~~   88 (102)
T d1v5oa_          85 DNVG   88 (102)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6554

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=7.8e-17  Score=117.38  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=68.4

Q ss_pred             eeEEEEEeecceEE-EeecCCcCcHHHHHHHHHHH-----hCCC--CCceEEEecCeEcCCCCccccCCCCCCC------
Q 023198          212 KHSIFVKLLNGRYI-ILEVAKFDTVRDVKDKLFRE-----IGQA--PDSQRLVFKRQQLEDDRNLASYKIVNES------  277 (286)
Q Consensus       212 ~~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gi~--~~~q~L~~~g~~L~d~~tL~~y~I~~~~------  277 (286)
                      .+.|.+|+++|+.+ .+.+++++||.+||++|++.     .|+|  +++|||+|+|+.|+|+.||++|+|..|+      
T Consensus         7 ~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~~   86 (101)
T d1se9a_           7 QLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVT   86 (101)
T ss_dssp             CEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCE
T ss_pred             eEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCce
Confidence            37899999999987 69999999999999999876     7888  7899999999999999999999999998      


Q ss_pred             EEEEEcCC
Q 023198          278 IVNLTDLG  285 (286)
Q Consensus       278 ~l~l~~~~  285 (286)
                      ++||+.|.
T Consensus        87 tmHlVvrp   94 (101)
T d1se9a_          87 TMHVIIQA   94 (101)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99999875

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=9.9e-17  Score=120.48  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=71.1

Q ss_pred             eeeeCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHH--------HhhhCCCCccEEEEECCEEeeccccccccccCCC
Q 023198           55 IHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFII--------EVREGIPVHEYDIYYGGKLIESYITLDVLNINNE  126 (286)
Q Consensus        55 l~l~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I--------~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~  126 (286)
                      -++....|+|+|++++ |+++.+.|++++||.+||++|        +++.|+|+++|||+|.|+.|+|+.+|++|+|.+|
T Consensus        10 ~~~~~~~i~i~v~~l~-Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g   88 (116)
T d1wgha_          10 SHVPADMINLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFG   88 (116)
T ss_dssp             CCCCSSSEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSS
T ss_pred             CCCCCCeEEEEEEEcC-CCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCC
Confidence            3334567999999999 999999999999999999999        5678999999999999999999999999999999


Q ss_pred             Ce--EEEEeec
Q 023198          127 DT--LQMISVP  135 (286)
Q Consensus       127 s~--i~l~~~~  135 (286)
                      ++  +||+++.
T Consensus        89 ~~~~lhlv~r~   99 (116)
T d1wgha_          89 KTTVMHLVARE   99 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEEeCC
Confidence            87  5555553

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.5e-17  Score=119.50  Aligned_cols=72  Identities=22%  Similarity=0.210  Sum_probs=66.9

Q ss_pred             eEEEE----EeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcC-CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFV----KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE-DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~v----k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~-d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+|    |..+|.+++++|++++||++||++|+.++|+|+++|+|+|+|+.|. |++||++|||++|++|+|+.+
T Consensus         8 m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             EEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            66677    7778999999999999999999999999999999999999999995 668999999999999999865

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=9.5e-17  Score=120.56  Aligned_cols=73  Identities=16%  Similarity=0.246  Sum_probs=68.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHH--------HHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCE--EEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKL--------FREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESI--VNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I--------~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~--l~l~  282 (286)
                      ++|+|++++|+++.+.|++++||.+||++|        +++.|+|+++|||+|.|+.|+|+.||.+|+|.+|++  |||+
T Consensus        17 i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lhlv   96 (116)
T d1wgha_          17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEEEE
Confidence            889999999999999999999999999999        467899999999999999999999999999999986  7887


Q ss_pred             cCC
Q 023198          283 DLG  285 (286)
Q Consensus       283 ~~~  285 (286)
                      .|.
T Consensus        97 ~r~   99 (116)
T d1wgha_          97 ARE   99 (116)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            764

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=8.8e-17  Score=117.27  Aligned_cols=70  Identities=24%  Similarity=0.287  Sum_probs=66.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD  283 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~  283 (286)
                      +.|.||+.+++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+-
T Consensus         8 ~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~   77 (96)
T d1wgga_           8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG   77 (96)
T ss_dssp             EEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred             eEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEe
Confidence            78999998888889999999999999999999999999999999999999986 89999999999999963

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.6e-17  Score=117.72  Aligned_cols=76  Identities=18%  Similarity=0.221  Sum_probs=65.0

Q ss_pred             EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCC-------CeEEEEeec
Q 023198           63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNE-------DTLQMISVP  135 (286)
Q Consensus        63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~-------s~i~l~~~~  135 (286)
                      +|||+...++.+++++|++++||.+||++|++++|+|+++|||+|+|++|+|++||++|||.++       +++.+.++.
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~~   80 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA   80 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEec
Confidence            3677766635688999999999999999999999999999999999999999999999999654       466666665


Q ss_pred             ccc
Q 023198          136 KEL  138 (286)
Q Consensus       136 ~~~  138 (286)
                      .+.
T Consensus        81 ~~~   83 (103)
T d2c9wb1          81 DDT   83 (103)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            554

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=6e-17  Score=120.90  Aligned_cols=71  Identities=24%  Similarity=0.316  Sum_probs=64.7

Q ss_pred             EEEEEe-ecceEEEeecCC-cCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          214 SIFVKL-LNGRYIILEVAK-FDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       214 ~i~vk~-~~g~~~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +|.|+. .+|+++++.|.+ ++||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|||++|
T Consensus        31 ~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr  103 (111)
T d1we6a_          31 RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             EECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             EEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEee
Confidence            334433 368999999987 99999999999999999999999999999999999999999999999999986

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.7e-17  Score=122.97  Aligned_cols=76  Identities=13%  Similarity=0.106  Sum_probs=71.7

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEE---------------EEECCEEeecc-cccccccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYD---------------IYYGGKLIESY-ITLDVLNI  123 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~---------------L~~~g~~L~D~-~tL~~~~I  123 (286)
                      ..|.|+|++.+ |++++++|++++||++||++|++.+|+|+++||               |+|+|+.|.|+ .+|++|+|
T Consensus         6 s~M~v~Vk~~~-G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI   84 (105)
T d1v2ya_           6 SGMTVRVCKMD-GEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             CSEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             CcEEEEEEeCC-CCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCC
Confidence            47999999999 999999999999999999999999999999997               99999999765 59999999


Q ss_pred             CCCCeEEEEeecc
Q 023198          124 NNEDTLQMISVPK  136 (286)
Q Consensus       124 ~~~s~i~l~~~~~  136 (286)
                      .+|++|+|+.+++
T Consensus        85 ~~g~~l~lv~r~~   97 (105)
T d1v2ya_          85 RNRDEVSFIKKLG   97 (105)
T ss_dssp             CSSEEEEEEECSC
T ss_pred             CCCCEEEEEEecC
Confidence            9999999998875

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.5e-17  Score=122.07  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=68.7

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceE---------------EEecCeEcCCC-CccccCCCCCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQR---------------LVFKRQQLEDD-RNLASYKIVNE  276 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~---------------L~~~g~~L~d~-~tL~~y~I~~~  276 (286)
                      |.|.||+.+|+++.++|++++||++||++|++++|+|+++||               |+|+|+.|.|+ .||.+|+|++|
T Consensus         8 M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g   87 (105)
T d1v2ya_           8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCC
Confidence            899999999999999999999999999999999999999997               99999999765 69999999999


Q ss_pred             CEEEEEcC
Q 023198          277 SIVNLTDL  284 (286)
Q Consensus       277 ~~l~l~~~  284 (286)
                      ++|||+.|
T Consensus        88 ~~l~lv~r   95 (105)
T d1v2ya_          88 DEVSFIKK   95 (105)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEEe
Confidence            99999876

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.7e-16  Score=115.78  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=68.8

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ..|+|.||+.. ++.+.++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|+|.+|++|+|+...
T Consensus         6 ~~~~I~VK~~~-~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t~   79 (96)
T d1wgga_           6 SGYSVTVKWGK-EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             CEEEEEEEETT-EEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             CceEEEEEeCC-CCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEeeC
Confidence            47899999998 88889999999999999999999999999999999999999986 8999999999999987543

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=4.6e-16  Score=112.84  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=68.3

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEee-ccccccccccCCCCeEEEEeecccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIE-SYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      ..|+|+||+++ |+.+.++|++++||++||++|+   .+|+++|+|+|+|+.|. |.++|++|+|.+|++|+++++.+++
T Consensus         6 s~m~i~vK~l~-~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~~   81 (95)
T d1wiaa_           6 SGINVRLKFLN-DTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA   81 (95)
T ss_dssp             CSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred             CcEEEEEEcCC-CCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCCC
Confidence            47999999999 9999999999999999999986   45889999999999996 6689999999999999999877653

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-16  Score=117.17  Aligned_cols=72  Identities=19%  Similarity=0.324  Sum_probs=66.4

Q ss_pred             eEEEE--EeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFV--KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~v--k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|++  +...|+++.++|++++||++||.+|+++.|+|+++|+|+|+|+.|+|+.||.+|+|+++++|+++.+
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEc
Confidence            34444  5678999999999999999999999999999999999999999999999999999999999998865

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=8.7e-16  Score=111.36  Aligned_cols=69  Identities=23%  Similarity=0.338  Sum_probs=64.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcC-CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE-DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~-d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|+||+++|+++.+++++++||++||++|+   .+++++|||+|+|+.|. |.++|.+|+|.+|++|||+.+
T Consensus         8 m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~   77 (95)
T d1wiaa_           8 INVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS   77 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEc
Confidence            8899999999999999999999999999986   56889999999999996 668999999999999999864

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3e-16  Score=115.05  Aligned_cols=75  Identities=11%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             ceEEEE--EeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198           61 VMKLYF--KTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK  136 (286)
Q Consensus        61 ~~~i~V--k~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~  136 (286)
                      .++|++  +... |++++++|.+++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|.++++|+++....
T Consensus        17 ti~V~~~~~~~~-g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~~   93 (100)
T d1wjua_          17 TIEVFLPPRLKK-DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQ   93 (100)
T ss_dssp             EEEEECCTTTCC-SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCC
T ss_pred             EEEEEEeeccCC-CeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcCC
Confidence            345565  4455 99999999999999999999999999999999999999999999999999999999998875543

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=6e-16  Score=112.56  Aligned_cols=70  Identities=17%  Similarity=0.239  Sum_probs=65.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.|.|+ ++++++.++|++++||.+||++|++.+|+|+++|+|+|+|+ |.|+.||.+|+|++|++|+|+..
T Consensus        18 i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs   87 (95)
T d1v86a_          18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCS
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEec
Confidence            778887 58999999999999999999999999999999999999997 99999999999999999999854

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.1e-15  Score=110.02  Aligned_cols=71  Identities=27%  Similarity=0.353  Sum_probs=65.3

Q ss_pred             eEEEEEeecceEEEe-ecCCcCcHHHHHHHHHHHhCCCCCceEEE---ecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIIL-EVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l-~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|.||. .|+.+.+ ++++++||++||++|++++|+|+++|+|+   |.|+.|+|+.+|.+|+|++|++|+|+-.
T Consensus         8 ~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s   82 (90)
T d1v5ta_           8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             EEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEee
Confidence            7889996 6666666 79999999999999999999999999999   6999999999999999999999999854

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.3e-15  Score=106.13  Aligned_cols=71  Identities=23%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             eEEEEEeecceEEEeec-----CCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcC-CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEV-----AKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE-DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v-----~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~-d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |+|.|+. .++.+.+++     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+-+
T Consensus         2 i~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~   78 (81)
T d1wxva1           2 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   78 (81)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             EEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEe
Confidence            5677865 667777776     5788999999999999999999999999999996 668999999999999999865

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.2e-15  Score=105.39  Aligned_cols=73  Identities=14%  Similarity=0.278  Sum_probs=65.4

Q ss_pred             ceEEEEEeCCCCcEEEEEE-----cCCccHHHHHHHHHhhhCCCCccEEEEECCEEee-ccccccccccCCCCeEEEEee
Q 023198           61 VMKLYFKTPSNEKTFELKA-----NRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIE-SYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v-----~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      +|.|.|+..  ++.+++++     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|.+|++++|+.+
T Consensus         1 gi~i~V~~~--~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~   78 (81)
T d1wxva1           1 GLTVTVTHS--NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   78 (81)
T ss_dssp             SEEEEEECS--SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CEEEEEEEC--CeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEe
Confidence            478888764  68899998     4688999999999999999999999999999995 678999999999999999876


Q ss_pred             c
Q 023198          135 P  135 (286)
Q Consensus       135 ~  135 (286)
                      .
T Consensus        79 ~   79 (81)
T d1wxva1          79 K   79 (81)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.1e-15  Score=110.21  Aligned_cols=75  Identities=15%  Similarity=0.282  Sum_probs=68.8

Q ss_pred             CceEEEEEeCCCCcEEEE-EEcCCccHHHHHHHHHhhhCCCCccEEEE---ECCEEeeccccccccccCCCCeEEEEeec
Q 023198           60 GVMKLYFKTPSNEKTFEL-KANRSDTIENIKFIIEVREGIPVHEYDIY---YGGKLIESYITLDVLNINNEDTLQMISVP  135 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l-~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~D~~tL~~~~I~~~s~i~l~~~~  135 (286)
                      ..|.|+||+.  |+.+.+ ++++++||.+||++|++++|+|+++|+|+   |.|+.|+|+.+|++|+|.+|++|+|+.+.
T Consensus         6 ~~~~i~Vk~~--~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           6 SGLPIIVKWG--GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CSCCEEEEET--TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             CcEEEEEEEC--CeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeC
Confidence            4789999985  577777 79999999999999999999999999999   79999999999999999999999998765


Q ss_pred             c
Q 023198          136 K  136 (286)
Q Consensus       136 ~  136 (286)
                      .
T Consensus        84 ~   84 (90)
T d1v5ta_          84 E   84 (90)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.6e-15  Score=108.59  Aligned_cols=76  Identities=21%  Similarity=0.286  Sum_probs=66.9

Q ss_pred             ceEEEEEeCCCCc--EEEEEEcCCccHHHHHHHHHhhhC--CCCccEEEEECCEEeeccccccccccCCCC--eEEEEee
Q 023198           61 VMKLYFKTPSNEK--TFELKANRSDTIENIKFIIEVREG--IPVHEYDIYYGGKLIESYITLDVLNINNED--TLQMISV  134 (286)
Q Consensus        61 ~~~i~Vk~~~~g~--~~~l~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~D~~tL~~~~I~~~s--~i~l~~~  134 (286)
                      .|+|+||+++ ++  .+++++++++||.+||++|+++.+  +|+++|||+|+|+.|+|+.+|++|....++  ++||+++
T Consensus         7 ~i~l~Ik~~~-~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           7 GVTLLVKSPN-QRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCEEEEECSS-SSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             cEEEEEECCC-CCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEec
Confidence            6899999987 54  588999999999999999999965  999999999999999999999999766444  8999887


Q ss_pred             ccc
Q 023198          135 PKE  137 (286)
Q Consensus       135 ~~~  137 (286)
                      ++.
T Consensus        86 ~~~   88 (93)
T d1wgda_          86 VKS   88 (93)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-15  Score=110.69  Aligned_cols=69  Identities=23%  Similarity=0.316  Sum_probs=59.7

Q ss_pred             EEEEeecc-eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCC-------CEEEEEc
Q 023198          215 IFVKLLNG-RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNE-------SIVNLTD  283 (286)
Q Consensus       215 i~vk~~~g-~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~-------~~l~l~~  283 (286)
                      |+|+...+ .++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|++||++|||.++       +++++..
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~   78 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF   78 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEE
Confidence            45555555 578899999999999999999999999999999999999999999999999554       4666653

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.3e-15  Score=110.71  Aligned_cols=75  Identities=15%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      ..|.|.|++ . +++++++|++++||.+||++|++.+|+|+++|+|+|+|+ |+|+.+|++|+|.++++|+|+.+..+
T Consensus        16 ~~i~v~V~~-~-~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~~~   90 (95)
T d1v86a_          16 ELVDLKIIW-N-KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGSTIS   90 (95)
T ss_dssp             CCEEEEEEE-T-TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSSCC
T ss_pred             cEEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecCCC
Confidence            468888886 4 799999999999999999999999999999999999997 99999999999999999999866543

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.7e-15  Score=106.37  Aligned_cols=72  Identities=24%  Similarity=0.245  Sum_probs=64.4

Q ss_pred             eEEEEEeecce--EEEeecCCcCcHHHHHHHHHHHhC--CCCCceEEEecCeEcCCCCccccCCCC--CCCEEEEEcC
Q 023198          213 HSIFVKLLNGR--YIILEVAKFDTVRDVKDKLFREIG--QAPDSQRLVFKRQQLEDDRNLASYKIV--NESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~g~~L~d~~tL~~y~I~--~~~~l~l~~~  284 (286)
                      |.++||+++++  .+.+++++++||.+||++|+++.|  +|+++|||+|+|+.|+|+.+|++|..+  .+.+|||+.+
T Consensus         8 i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             EEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEec
Confidence            78899998775  588999999999999999999975  999999999999999999999999765  4459999875

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=5.6e-14  Score=101.79  Aligned_cols=73  Identities=18%  Similarity=0.160  Sum_probs=65.3

Q ss_pred             eEEEEEee-cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe-------EcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLL-NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ-------QLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~-------~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      +.++|+.. ++.....+++++.||++||++|+..+|+|+++|+|+|.|+       .++|+.+|.+|+|.+|++|||+++
T Consensus         8 v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~   87 (95)
T d1v6ea_           8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeC
Confidence            67788763 5556788999999999999999999999999999999887       688999999999999999999976


Q ss_pred             C
Q 023198          285 G  285 (286)
Q Consensus       285 ~  285 (286)
                      .
T Consensus        88 ~   88 (95)
T d1v6ea_          88 S   88 (95)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.45  E-value=1.8e-13  Score=95.80  Aligned_cols=76  Identities=13%  Similarity=0.197  Sum_probs=70.0

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL  138 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~  138 (286)
                      .+.|.|+. + |+.+.+.|.+++++..|++.+.++.|+|+++|+|+|+|+.|.++.|+++|++.+|++|++++++.||
T Consensus         4 ~I~ikv~~-~-~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           4 HINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEEES-S-SCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEEECC-C-CeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            35566654 4 7888999999999999999999999999999999999999999999999999999999999998876

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.7e-13  Score=99.21  Aligned_cols=79  Identities=18%  Similarity=0.177  Sum_probs=69.2

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCE-------EeeccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK-------LIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-------~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      ..+.|+|++..++......++++.||.+||++|+..+|+|+++|+|+|.|+       .++|+.+|++|++.+|++|||+
T Consensus         6 s~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlv   85 (95)
T d1v6ea_           6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             CcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEE
Confidence            368899998643667788899999999999999999999999999998876       4789999999999999999998


Q ss_pred             eecccc
Q 023198          133 SVPKEL  138 (286)
Q Consensus       133 ~~~~~~  138 (286)
                      .+.+.+
T Consensus        86 d~~p~~   91 (95)
T d1v6ea_          86 DHSGSG   91 (95)
T ss_dssp             CCSCCS
T ss_pred             eCCCCC
Confidence            776543

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=6.6e-14  Score=100.31  Aligned_cols=55  Identities=31%  Similarity=0.403  Sum_probs=49.7

Q ss_pred             CCcchHHHHHHHHhhchhcCCC-CCCCeEEecCcccccCCcccccCCCCCceeeee
Q 023198            4 KKTEKIEKLKLRIHAKVEEEIL-EDLPELFYAGQQLENGLTVIDYGIPNNSVIHND   58 (286)
Q Consensus         4 ~~~dtv~~vK~~i~~~~~~~i~-~~~q~l~~~g~~L~d~~~l~~y~i~~~s~l~l~   58 (286)
                      ..+.||.++|++|.+++.+++| +++|+|+|+|++|+|+.+|++|+|.+|+||||+
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV   90 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVL   90 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEE
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEE
Confidence            3577999999999988666776 699999999999999999999999999999983

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.6e-13  Score=98.31  Aligned_cols=57  Identities=19%  Similarity=0.240  Sum_probs=51.8

Q ss_pred             cCCcCcHHHHHHHHHHHhC--CC-CCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198          229 VAKFDTVRDVKDKLFREIG--QA-PDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       229 v~~~~tV~~lK~~I~~~~g--i~-~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      +..+.||.+||++|+++..  +| +++|+|+|+|+.|+|+.||++|||++|+||||+.|.
T Consensus        34 ~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r~   93 (94)
T d1x1ma1          34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKS   93 (94)
T ss_dssp             CCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEESS
T ss_pred             CCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEeC
Confidence            4568899999999999864  54 699999999999999999999999999999999986

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.40  E-value=4.8e-13  Score=93.59  Aligned_cols=71  Identities=14%  Similarity=0.275  Sum_probs=66.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+. +|+.+.+.|.+++++..|++.++++.|+++++|+|+|+|+.|.++.|+++|+|++|++|+++.+
T Consensus         5 I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~   75 (79)
T d1euvb_           5 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   75 (79)
T ss_dssp             EEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             EEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEe
Confidence            5667775 6788889999999999999999999999999999999999999999999999999999999765

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=4.7e-13  Score=97.29  Aligned_cols=73  Identities=21%  Similarity=0.193  Sum_probs=62.6

Q ss_pred             eEEEEEe---ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeE-------cC-CCCccccCCCCCCCEEEE
Q 023198          213 HSIFVKL---LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ-------LE-DDRNLASYKIVNESIVNL  281 (286)
Q Consensus       213 ~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~-------L~-d~~tL~~y~I~~~~~l~l  281 (286)
                      +++.|+.   .+++.+++++++++||.+||.+|+..+|+|+++|+|+|.|+.       |+ |+++|.+|+|++|++|++
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            3455553   457889999999999999999999999999999999998873       44 789999999999999999


Q ss_pred             EcCC
Q 023198          282 TDLG  285 (286)
Q Consensus       282 ~~~~  285 (286)
                      .+.+
T Consensus        90 ~~~~   93 (97)
T d1wjna_          90 RWSG   93 (97)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            7643

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.2e-12  Score=88.19  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=69.2

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ++|.|+..+|+.+.+.|.++++++.|+...+++.|+|+++++|+|+|+.|.++.|++++++++|++|++..+
T Consensus         3 I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~   74 (77)
T d2uyzb1           3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   74 (77)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            678899999999999999999999999999999999999999999999999999999999999999998864

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=3.5e-12  Score=92.60  Aligned_cols=72  Identities=21%  Similarity=0.284  Sum_probs=61.6

Q ss_pred             eEEEEEeCC--CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEE-------ee-ccccccccccCCCCeEEE
Q 023198           62 MKLYFKTPS--NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKL-------IE-SYITLDVLNINNEDTLQM  131 (286)
Q Consensus        62 ~~i~Vk~~~--~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-------L~-D~~tL~~~~I~~~s~i~l  131 (286)
                      +.|.|+...  .++.+.+++.+++||.+||.+|+..+|+|+++|+|+|.|+.       |+ |+++|.+|+|.+|++|++
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            556666432  27889999999999999999999999999999999998863       43 789999999999999997


Q ss_pred             Ee
Q 023198          132 IS  133 (286)
Q Consensus       132 ~~  133 (286)
                      ..
T Consensus        90 ~~   91 (97)
T d1wjna_          90 RW   91 (97)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.27  E-value=6.3e-12  Score=89.90  Aligned_cols=71  Identities=14%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             EEEEEe-ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe-------EcCCCCccccCCCCCCCEEEEEcC
Q 023198          214 SIFVKL-LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ-------QLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       214 ~i~vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~-------~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      .+.|.+ .++..+...++++.||.+||++|+..+|+|+..|+|+|.|+       ..+|+++|.+|||.+|++||+++.
T Consensus         6 ~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            344443 23344677889999999999999999999999999999876       567899999999999999999875

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-11  Score=86.24  Aligned_cols=76  Identities=17%  Similarity=0.299  Sum_probs=71.7

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE  137 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~  137 (286)
                      .+.|.|+..+ |+.+.+.|.+++++..|++...++.|+|+++++|+|+|+.|.++.|++++++.+|++|+++.+..|
T Consensus         2 ~I~ikv~~~d-g~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           2 YIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEEECTT-CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            4788999999 999999999999999999999999999999999999999999999999999999999999987653

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.13  E-value=9e-11  Score=83.73  Aligned_cols=73  Identities=18%  Similarity=0.208  Sum_probs=59.5

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCE-------EeeccccccccccCCCCeEEEEee
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK-------LIESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-------~L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      +.+.|.+...+..+...+.++.||.+||++|+..+|+|+..|+|+|.|+       .++|+++|++|||.+|++|+++-.
T Consensus         5 ~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           5 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            3455554321444667789999999999999999999999999998776       357899999999999999998754

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.7e-07  Score=63.42  Aligned_cols=70  Identities=11%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT  282 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~  282 (286)
                      +++.|+..+|+.+.+.|.++++...|...-+++.|+++...+|+|.|..+..+.|-+++++++|++|.+-
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            4677888889999999999999999999999999999999999999999999999999999999999863

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.43  E-value=1.5e-07  Score=65.23  Aligned_cols=68  Identities=18%  Similarity=0.178  Sum_probs=53.6

Q ss_pred             EEEEeecceEEEeecCC-cCcHHHHHHHHHHHhCCCCCceEEEec--------------CeEcC-CCCccccCCCCCCCE
Q 023198          215 IFVKLLNGRYIILEVAK-FDTVRDVKDKLFREIGQAPDSQRLVFK--------------RQQLE-DDRNLASYKIVNESI  278 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~~~--------------g~~L~-d~~tL~~y~I~~~~~  278 (286)
                      |.|++.+|. ..++|+. +.|+.+||.+|++..++|.+.|.|..+              -..|. |+.+|+++||.+|+.
T Consensus         3 iRiRsrdG~-eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDGL-ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSCE-EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCCc-eEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            556777774 4577754 789999999999999999999999432              33455 445699999999999


Q ss_pred             EEEEc
Q 023198          279 VNLTD  283 (286)
Q Consensus       279 l~l~~  283 (286)
                      ||+.-
T Consensus        82 vyL~y   86 (94)
T d1wf9a1          82 VYLAY   86 (94)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            99853

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.1e-06  Score=59.30  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=65.1

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198           62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~  132 (286)
                      +.|.|+... |+.+.+.|.++++...|.....+..|+|++..+++|+|..+....|.+++++.+|+.|.+.
T Consensus         2 I~lkv~~~~-g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTT-SCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCC-CCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            467788777 9999999999999999999999999999999999999999999999999999999988763

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=2.5e-06  Score=58.90  Aligned_cols=68  Identities=12%  Similarity=0.197  Sum_probs=53.2

Q ss_pred             EEeecCCCeEEEecCC-CccHHhHHHHHHHHhcCCCCCCeEEEeC--------------Ceee-cCCccccccccCCCce
Q 023198          141 IFVQTPTSTVKLEVRR-AHTVLDVKKMVESMRICIPSEDCELFRG--------------GEQL-QNLKTLAYYDIKENEV  204 (286)
Q Consensus       141 I~V~~~~g~~~l~v~~-~~tV~~lK~~I~~~~~gip~~~q~L~~~--------------g~~L-~d~~tL~~y~i~~~~~  204 (286)
                      |.|...+|+-.++|+. +.||.+||.+|++ ..++|.+.|.|..+              -..| +|+.+|+.++|.+|+.
T Consensus         3 iRiRsrdG~eRv~v~~~~~Tl~~LK~~Ie~-~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDGLERVSVDGPHITVSQLKTLIQD-QLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSCEEEEEECCTTSBHHHHHHHHHH-HSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCCceEEEecCCCCcHHHHHHHHHH-HhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            4456667755666754 6899999999999 99999999999543              2235 4556799999999999


Q ss_pred             EEEEe
Q 023198          205 LQIIR  209 (286)
Q Consensus       205 i~l~~  209 (286)
                      +++..
T Consensus        82 vyL~y   86 (94)
T d1wf9a1          82 VYLAY   86 (94)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            99853

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.2e-05  Score=53.76  Aligned_cols=70  Identities=19%  Similarity=0.208  Sum_probs=65.4

Q ss_pred             EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198          215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      |.|=.++|+..++.+.|++|+.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+.+.|+-.
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEEc
Confidence            4556689999999999999999999999999999999999999999999999999999999999999753

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=0.00014  Score=48.49  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=63.6

Q ss_pred             EEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEe
Q 023198          141 IFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIR  209 (286)
Q Consensus       141 I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~  209 (286)
                      |.|-.++| ..++.|.|++|+.++-++..+ +.|+.++++.|.|+++.++-+-.++..|+.+|+.+.|+-
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~-k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCR-RQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHH-HTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHH-HhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            56667888 999999999999999999999 999999999999999999999999999999999999864

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00059  Score=46.44  Aligned_cols=71  Identities=15%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE---DDRNLASYKIVNESIVNLTDL  284 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~l~l~~~  284 (286)
                      ..|.|+.++|+.+.-...+++|+++|..-|... +.++....|+  |..+.+.   ++.||.+.|+-+.++|++-.+
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~~   81 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK   81 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEeC
Confidence            457889999999999999999999999999874 7788888886  6888884   567999999999999988643

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.002  Score=44.36  Aligned_cols=66  Identities=18%  Similarity=0.349  Sum_probs=54.1

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHh-CCCCCceEEE--ecCeEc-CCCCccccCCCCCCCE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREI-GQAPDSQRLV--FKRQQL-EDDRNLASYKIVNESI  278 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~q~L~--~~g~~L-~d~~tL~~y~I~~~~~  278 (286)
                      ..|.|+.++|+.+.....+++||++|..-+.... +.+.....|+  |..+.+ +++.||.+.|+.++..
T Consensus        15 t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~v   84 (89)
T d1i42a_          15 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI   84 (89)
T ss_dssp             EEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCSEE
T ss_pred             EEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCceE
Confidence            4577899999999999999999999999998764 5676778886  457777 5668999999986543

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0024  Score=46.83  Aligned_cols=72  Identities=14%  Similarity=0.265  Sum_probs=60.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC---CCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE---DDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      ..|.||.++|+.+.....+++||.+|...+... +.+.....|+  |..+.|.   .+.||.+.|+.+..+|++-..|
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee~~  120 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESG  120 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEecC
Confidence            567889999999999999999999999999875 5666777775  6777873   4689999999999999987654

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.0041  Score=43.30  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=58.5

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC--CCCccccCCCCCCCEEEEEcCC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE--DDRNLASYKIVNESIVNLTDLG  285 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~--d~~tL~~y~I~~~~~l~l~~~~  285 (286)
                      ..|.||.++|+.+.-...+++||.+|..-+... +......+|+  |..+.+.  .+.||.+.|+.+..+|++..+.
T Consensus        17 ~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~d   92 (96)
T d2cr5a1          17 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE   92 (96)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecCC
Confidence            567788999999999999999999999998765 5566667775  5556664  4689999999999999987653

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0061  Score=41.10  Aligned_cols=71  Identities=21%  Similarity=0.316  Sum_probs=58.0

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe---eccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI---ESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L---~D~~tL~~~~I~~~s~i~l~  132 (286)
                      +...|.||.++ |+.+.-...+++|+.+|.+.+.. .+.++....|+  |..+.+   +.+.||++.|+...+++++-
T Consensus         4 ~~~~i~iRlPd-G~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           4 PVSKLRIRTPS-GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             CCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             CcEEEEEECCC-CCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            34578899999 99999999999999999999987 47777777776  467777   35679999999888877653

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.028  Score=38.30  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=53.9

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhh-CCCCccEEEEEC--CEEe-eccccccccccCCC
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVRE-GIPVHEYDIYYG--GKLI-ESYITLDVLNINNE  126 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~q~L~~~--g~~L-~D~~tL~~~~I~~~  126 (286)
                      +...|.|+.++ |+.+.....+++||.+|.+.+.... +.+.....|+.+  .+.+ +++.||.+.|+.+.
T Consensus        13 p~t~I~iRlPd-G~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s   82 (89)
T d1i42a_          13 PTTNIQIRLAD-GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA   82 (89)
T ss_dssp             CCEEEEEEETT-TCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS
T ss_pred             CcEEEEEEcCC-CCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc
Confidence            45678899999 9999999999999999999998753 566667778754  6777 44789999999854

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.037  Score=40.16  Aligned_cols=71  Identities=13%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe---eccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI---ESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L---~D~~tL~~~~I~~~s~i~l~  132 (286)
                      +..+|-||.++ |+.+......++||.+|.+.++.. +.+.....|+  |--+.|   +...||.+.|+....+|++-
T Consensus        42 p~~~l~iRlPd-G~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          42 PKAQLMLRYPD-GKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             CEEEEEEECTT-SCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CceEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            45788999999 999999999999999999999875 4555566665  455666   34689999999988877654

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.038  Score=38.05  Aligned_cols=71  Identities=11%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe--eccccccccccCCCCeEEEE
Q 023198           60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI--ESYITLDVLNINNEDTLQMI  132 (286)
Q Consensus        60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L--~D~~tL~~~~I~~~s~i~l~  132 (286)
                      +.+.|.||.++ |+.+.-...+++||.+|...+.... ......+|+  |-.+.+  +.+.||.++|+.+..++.+-
T Consensus        15 ~~~~i~iRlPd-G~r~~r~F~~~dtl~~l~~fv~~~~-~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~   89 (96)
T d2cr5a1          15 EVVTVALRCPN-GRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE   89 (96)
T ss_dssp             SEEEEEEECTT-SCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred             CeEEEEEECCC-CCEEEEEECCcccHHHHHHHHHHhc-cCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEe
Confidence            46789999999 9999999999999999999997653 444556665  334555  34689999999988877664

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.47  Score=31.50  Aligned_cols=67  Identities=15%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCce-EEEecCe-----EcCCCCccccCCCCCCCEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQ-RLVFKRQ-----QLEDDRNLASYKIVNESIVN  280 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~g~-----~L~d~~tL~~y~I~~~~~l~  280 (286)
                      +++.|.++++ ++.+.+++..+..+|-.++++..|+....+ =|.|-+.     =|+.++.|..+.++.+....
T Consensus         2 ~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~   74 (84)
T d1ef1a3           2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLL   74 (84)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEE
T ss_pred             EEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEE
Confidence            5788899997 589999999999999999999999876554 3555322     36788899888776665443

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=2.2  Score=27.95  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceE-EEe--cCe--EcCCCCccccCCCCCCCEEEE
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQR-LVF--KRQ--QLEDDRNLASYKIVNESIVNL  281 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~-L~~--~g~--~L~d~~tL~~y~I~~~~~l~l  281 (286)
                      +.+.|.+++++ +.+.+++.++..+|-.++++..|+....+- |.|  +|.  =|+.+++|..+.++.+..+.+
T Consensus         3 ~~v~V~lLD~~-le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~   75 (84)
T d1h4ra3           3 FTVRIVTMDAE-MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTF   75 (84)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEE
T ss_pred             EEEEEEEcCCc-EEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecCCceEEccCCCchhhhccCCCCCEEE
Confidence            56788999985 789999999999999999999999775542 443  332  356778898887777765544

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.23  E-value=0.95  Score=29.07  Aligned_cols=43  Identities=23%  Similarity=0.183  Sum_probs=38.6

Q ss_pred             EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198          214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV  256 (286)
Q Consensus       214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~  256 (286)
                      .+.|-.++|+.-.+.+.|..|+.++-.++.++.|++++...++
T Consensus         2 ~iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~   44 (73)
T d1wxma1           2 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY   44 (73)
T ss_dssp             EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred             eEEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence            3567778999999999999999999999999999999988775

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.04  E-value=3.5  Score=26.79  Aligned_cols=66  Identities=12%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             eEEEEEeec------c-eEEEeecCCcCcHHHHHHHHHHHhCC-----------CCCceEEEecCeEcCCCCccccCCCC
Q 023198          213 HSIFVKLLN------G-RYIILEVAKFDTVRDVKDKLFREIGQ-----------APDSQRLVFKRQQLEDDRNLASYKIV  274 (286)
Q Consensus       213 ~~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~I~~~~gi-----------~~~~q~L~~~g~~L~d~~tL~~y~I~  274 (286)
                      |.|.|+...      | ....+++....||.+|.+.+.++.+-           .....++.-+|+...+     ++-++
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCcC
Confidence            456666553      3 46778888999999999999988641           1233455567776654     45678


Q ss_pred             CCCEEEEEc
Q 023198          275 NESIVNLTD  283 (286)
Q Consensus       275 ~~~~l~l~~  283 (286)
                      +|+.|-+..
T Consensus        77 ~gDevai~P   85 (88)
T d1vjka_          77 DGDVVGVFP   85 (88)
T ss_dssp             TTCEEEEES
T ss_pred             CCCEEEEeC
Confidence            999988764

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=1.1  Score=29.10  Aligned_cols=44  Identities=20%  Similarity=0.183  Sum_probs=38.9

Q ss_pred             EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe
Q 023198          214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF  257 (286)
Q Consensus       214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~  257 (286)
                      .+.|-.++|+.-.+.+.|..|+.++-.++.++.|++++...++-
T Consensus         3 ~iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~   46 (77)
T d1c1yb_           3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFR   46 (77)
T ss_dssp             EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             eEEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            35567789999999999999999999999999999999888753

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.82  E-value=1.1  Score=29.29  Aligned_cols=59  Identities=14%  Similarity=0.126  Sum_probs=43.9

Q ss_pred             eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceE-EEec---C--eEcCCCCccccC
Q 023198          213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQR-LVFK---R--QQLEDDRNLASY  271 (286)
Q Consensus       213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~-L~~~---g--~~L~d~~tL~~y  271 (286)
                      |...|..++|.++.+.+++..+..+|-+++++..|+....+- |.|-   |  .=|+.++++..+
T Consensus         1 ~~C~V~lLD~~~~~~~v~~~~~G~~l~~~Vc~~l~l~E~~YFGL~y~d~~~~~~WLd~~K~i~kq   65 (81)
T d1gg3a3           1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ   65 (81)
T ss_dssp             CEEEEECTTSCEEEEECCTTCCHHHHHHHHHHHHTTCSCCSSSCEEECCSSSCCBCCTTSCHHHH
T ss_pred             CEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCcccccceEEEECCCCceEecccccchhhh
Confidence            456788999999999999999999999999999998765531 3332   2  134555666554

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.38  E-value=5.1  Score=26.04  Aligned_cols=72  Identities=11%  Similarity=0.107  Sum_probs=54.9

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC-ccEEEEEC---CEE--eeccccccccccCCCCeEEEEee
Q 023198           61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV-HEYDIYYG---GKL--IESYITLDVLNINNEDTLQMISV  134 (286)
Q Consensus        61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~---g~~--L~D~~tL~~~~I~~~s~i~l~~~  134 (286)
                      +|+|.|.+++ + ++.+.+++..+..++=..+-+..|+.. +..-|.|-   |..  |+.++.|..+....+..+.+.++
T Consensus         1 t~~v~V~~LD-~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~F~   78 (84)
T d1ef1a3           1 TISVRVTTMD-A-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR   78 (84)
T ss_dssp             CEEEEEEETT-E-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred             CEEEEEEEcC-C-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEEEE
Confidence            4788999998 6 589999999999999999999999774 44666554   221  78888898887766665555443

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.82  E-value=1.1  Score=29.34  Aligned_cols=36  Identities=8%  Similarity=0.205  Sum_probs=33.9

Q ss_pred             eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec
Q 023198          223 RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK  258 (286)
Q Consensus       223 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~  258 (286)
                      =|+.+++.+..+...|.++|+++...+++.-.|.|+
T Consensus        14 fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_          14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             EEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            478899999999999999999999999999999995