Citrus Sinensis ID: 023199

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MKTLKMIDITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKRQRTERTATVEPQNQ
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccEEccccccccHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccHHcccccHHHEEEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccc
Coil and Loop (DISEMBL)
MKTLKMIDITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGhqanasqglevnainhsgvTAFDLllispseagdREIEEILRSAgatgmrddnqtsvDNLAVssaetnplrtkndmteffkfkkgrdspgetrSSLLVVAALVATTtfqfcvnppggtwqdnstpsskahiagesiwgstNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKRQrtertatvepqnq
Flexible Loop (DISEMBL)
mktlkmiditarkentcqvSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRsagatgmrddnqTSVDNLAVssaetnplrtkndmteffkfkkgrdspgetrSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKRqrtertatvepqnq
Low Complexity Region (SEG)
MKTLKMIDITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSPGETRSSllvvaalvatttFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKRQRTERTATVEPQNQ
Disordered region (IsUnstruct)
*******DITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLIS******************************************************************SLLVVAALVATTTFQFCVNPPGGTW**********HIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRL******************
Disordered Region (DISOPRED)
****KMIDITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRL******************
Disordered Region (DISEMBL)
MKTLKMIDITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKK********RSSLLVVAALVATTTFQFCVNPPGGTW***********IAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQK***************
Disordered Region (DISPRO)
MKTLKMIDITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG****************************NDMTEFFKFKKGRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKRQ*************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTLKMIDITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKRQRTERTATVEPQNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
224134298	255	predicted protein [Populus trichocarpa]	0.713	0.8	0.583	8e-63
224114660	448	predicted protein [Populus trichocarpa]	0.825	0.526	0.507	1e-62
359490025	450	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.846	0.537	0.490	6e-62
297737379	392	unnamed protein product [Vitis vinifera]	0.846	0.617	0.490	1e-61
387169570	435	hypothetical protein 34G24.15 [Capsella	0.863	0.567	0.474	3e-58
387169523	411	hypothetical protein 11M19.23, partial [	0.818	0.569	0.472	1e-57
15241393	442	ankyrin repeat-containing protein [Arabi	0.821	0.531	0.474	3e-57
147791225	394	hypothetical protein VITISV_030400 [Viti	0.811	0.588	0.429	5e-54
297745677	372	unnamed protein product [Vitis vinifera]	0.744	0.572	0.387	1e-25
359495749	460	PREDICTED: uncharacterized protein LOC10	0.758	0.471	0.356	1e-23

>gi|224134298|ref|XP_002321785.1| predicted protein [Populus trichocarpa] gi|222868781|gb|EEF05912.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 154/221 (69%), Gaps = 17/221 (7%)

Query: 42  LLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD----- 96
           +LLG    +S  LEVNAINHSG+TA D++LI PSEAGDREI EILRSAGAT  RD     
Sbjct: 1   MLLGSGTVSSGSLEVNAINHSGLTALDMVLIFPSEAGDREIVEILRSAGATRARDIIQST 60

Query: 97  --DNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSPGETRSSLLVVAALVATTTFQ 154
             +NQTS DN   +S     L   N++ E+FKFKKGRDSP E RS+LLV+A LVAT TFQ
Sbjct: 61  ISNNQTSTDN---TSTPERCLSNGNNLIEYFKFKKGRDSPSEARSTLLVIAVLVATATFQ 117

Query: 155 FCVNPPGGTWQD-------NSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQM 207
             VNPPGG WQD       NST SS AH  G+SI  +TN + F L++FFNS+GF +SL M
Sbjct: 118 VGVNPPGGVWQDTNIPDHTNSTSSSNAHFGGQSIMATTNKVGFMLFVFFNSVGFSMSLYM 177

Query: 208 INILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFV 248
           I +LT++FPLQFELQ+C LAM  TY TA+  IAP  + L V
Sbjct: 178 IYVLTSEFPLQFELQICLLAMYGTYGTALPCIAPSSLNLPV 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114660|ref|XP_002332335.1| predicted protein [Populus trichocarpa] gi|222832582|gb|EEE71059.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/260 (50%), Positives = 167/260 (64%), Gaps = 24/260 (9%)

Query: 29  EQLKTWIHL-------QVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDRE 81
           EQ  T +HL       +VIE+ LG  + ++  LEVNAINH+G+TA D++L+ PSEAGDRE
Sbjct: 174 EQGNTVLHLASWKKQRRVIEIFLGSGSASTGSLEVNAINHTGITALDVILLFPSEAGDRE 233

Query: 82  IEEILRSAGATGMRD-------DNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSP 134
           I EILRSAGA   RD       ++QTS DN    S        ++++ E+FKFKK RDSP
Sbjct: 234 IVEILRSAGAMRARDSVPSTVTNSQTSTDN---PSTPERCWSNRDNLVEYFKFKKDRDSP 290

Query: 135 GETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSK-------AHIAGESIWGSTNT 187
            E R +LLV+A LVAT TFQ  V PPGG WQD S P  K       AH AG+SI  +TNT
Sbjct: 291 SEARGTLLVIAVLVATATFQVGVGPPGGVWQDTSIPDQKNITSNNTAHFAGQSIMATTNT 350

Query: 188 IAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLF 247
           + F L++FFNS+GF +SL M+ +LT+KFPLQFELQ+C LAM  TY TA+  I P  + LF
Sbjct: 351 VGFMLFVFFNSVGFSMSLYMLYVLTSKFPLQFELQICLLAMYCTYGTALSCIVPSNLYLF 410

Query: 248 VILTISILPLAIGLTAYCFR 267
           V LT +IL   +   A   R
Sbjct: 411 VQLTTTILSSTMSALARSVR 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490025|ref|XP_003634016.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 126/257 (49%), Positives = 175/257 (68%), Gaps = 15/257 (5%)

Query: 30  QLKTWIHLQVIELLLGHQANASQGL-EVNAINHSGVTAFDLLLISPSEAGDREIEEILRS 88
            L TW   +  + LLG       G+ EVN +N+SG+TA D+LLI PSEAGDREI+EIL S
Sbjct: 182 HLATWRKQRQAKFLLGDATIPGSGVTEVNLMNNSGLTALDVLLIFPSEAGDREIKEILHS 241

Query: 89  AGATGMRD------DNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSPGETRSSLL 142
           AGA   +D        Q      + ++ ET P++  N++  +F+F +GRDSPGE RS+LL
Sbjct: 242 AGAKRAQDIAFPPFGTQNHARLNSTTTVETCPMQ-PNNLVNYFRFHRGRDSPGEARSALL 300

Query: 143 VVAALVATTTFQFCVNPPGGTWQDNS-------TPSSKAHIAGESIWGSTNTIAFCLYMF 195
           V+A LVAT T+Q  ++PPGG WQDNS       T ++KAH AG+SI+ S   I+F +++ 
Sbjct: 301 VIAVLVATATYQVGLSPPGGVWQDNSGTNQSNSTATNKAHFAGQSIFSSLGIISFGIFVL 360

Query: 196 FNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISIL 255
           FNS+GF +SL MI+ILT+KFP++FELQ+C LAM FTY+TA+I+I+PD +K+F+I+  SIL
Sbjct: 361 FNSIGFSVSLYMISILTSKFPMRFELQICLLAMFFTYNTAIITISPDNLKIFLIVLTSIL 420

Query: 256 PLAIGLTAYCFRLQQKR 272
           PL + L A   R   K+
Sbjct: 421 PLTVCLVAKWVREYVKK 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737379|emb|CBI26580.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/257 (49%), Positives = 175/257 (68%), Gaps = 15/257 (5%)

Query: 30  QLKTWIHLQVIELLLGHQANASQGL-EVNAINHSGVTAFDLLLISPSEAGDREIEEILRS 88
            L TW   +  + LLG       G+ EVN +N+SG+TA D+LLI PSEAGDREI+EIL S
Sbjct: 70  HLATWRKQRQAKFLLGDATIPGSGVTEVNLMNNSGLTALDVLLIFPSEAGDREIKEILHS 129

Query: 89  AGATGMRD------DNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSPGETRSSLL 142
           AGA   +D        Q      + ++ ET P++  N++  +F+F +GRDSPGE RS+LL
Sbjct: 130 AGAKRAQDIAFPPFGTQNHARLNSTTTVETCPMQ-PNNLVNYFRFHRGRDSPGEARSALL 188

Query: 143 VVAALVATTTFQFCVNPPGGTWQDNS-------TPSSKAHIAGESIWGSTNTIAFCLYMF 195
           V+A LVAT T+Q  ++PPGG WQDNS       T ++KAH AG+SI+ S   I+F +++ 
Sbjct: 189 VIAVLVATATYQVGLSPPGGVWQDNSGTNQSNSTATNKAHFAGQSIFSSLGIISFGIFVL 248

Query: 196 FNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISIL 255
           FNS+GF +SL MI+ILT+KFP++FELQ+C LAM FTY+TA+I+I+PD +K+F+I+  SIL
Sbjct: 249 FNSIGFSVSLYMISILTSKFPMRFELQICLLAMFFTYNTAIITISPDNLKIFLIVLTSIL 308

Query: 256 PLAIGLTAYCFRLQQKR 272
           PL + L A   R   K+
Sbjct: 309 PLTVCLVAKWVREYVKK 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169570|gb|AFJ66229.1| hypothetical protein 34G24.15 [Capsella rubella]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 129/272 (47%), Positives = 173/272 (63%), Gaps = 25/272 (9%)

Query: 22  DLSSDYKEQLKTWIHL-------QVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISP 74
           DL     EQ  T +HL       QV+E+L+      S+  EVNA+N  G++A DLL++ P
Sbjct: 147 DLLYKKDEQGNTALHLATWKKNRQVMEVLVQAIPEESRSFEVNAMNKMGLSALDLLVMFP 206

Query: 75  SEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSA---ETNPLRTKNDMTEFFKFKKGR 131
           SEAGDREI E L  AGA   RD   T+V+    +S     T    +  ++ ++F FKK R
Sbjct: 207 SEAGDREIYEKLIEAGAQRGRDVGTTNVERTTSTSTCQETTMECGSHKELVKYFTFKKHR 266

Query: 132 DSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPS------------SKAHIAGE 179
           DSP E RS+LLVVA+LVAT TFQ  + PPGGTWQD+S P+             +AHIAG+
Sbjct: 267 DSPSEARSALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQNKTSANATIQQAHIAGQ 326

Query: 180 SIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISI 239
           SI G+ N IAF +++FFN++GF +SL M+NILT  FPL+F+LQ+C +AM F+++TA+ SI
Sbjct: 327 SIMGTFNGIAFTMFVFFNTIGFSVSLSMLNILTLGFPLRFQLQICMMAMYFSHNTAMTSI 386

Query: 240 APDEVKLFVILTISILPLAIGLTAYCFRLQQK 271
           APD+VKL+ IL  SIL  A   T    RL +K
Sbjct: 387 APDQVKLYCILITSILAAA---TPSLMRLLEK 415

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169523|gb|AFJ66184.1| hypothetical protein 11M19.23, partial [Arabidopsis halleri]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/256 (47%), Positives = 171/256 (66%), Gaps = 22/256 (8%)

Query: 22  DLSSDYKEQLKTWIHL-------QVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISP 74
           D+ +   EQ  T +H+       QVIE+L+      S+  EVNA+N  G++A DLL++ P
Sbjct: 114 DVLNKKDEQGNTALHIATWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFP 173

Query: 75  SEAGDREIEEILRSAGATGMRDDNQTSVD-NLAVSSAETNPLRTKN--DMTEFFKFKKGR 131
           SEAGDREI E L  AGA   RD   T+V+ N + S+ +   + +++  ++ ++F FKK R
Sbjct: 174 SEAGDREIYEKLIEAGAQRGRDIGTTNVERNTSTSTCQERAMESQSHKELVKYFTFKKHR 233

Query: 132 DSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPS------------SKAHIAGE 179
           DSP E RS+LLVVA+LVAT TFQ  + PPGGTWQD+S P+             +AHIAG+
Sbjct: 234 DSPSEARSALLVVASLVATATFQASLTPPGGTWQDSSIPTVSQNTTSVNTTNQQAHIAGQ 293

Query: 180 SIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISI 239
           SI G+ N +AF L++FFN++GF +SL M+NILT  FPL+F+LQ+C +AM F+++T + SI
Sbjct: 294 SIMGTFNGVAFTLFVFFNTIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMASI 353

Query: 240 APDEVKLFVILTISIL 255
           APD VK++ IL  SIL
Sbjct: 354 APDNVKIYCILITSIL 369

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241393|ref|NP_199929.1| ankyrin repeat-containing protein [Arabidopsis thaliana] gi|8843852|dbj|BAA97378.1| unnamed protein product [Arabidopsis thaliana] gi|45825143|gb|AAS77479.1| At5g51160 [Arabidopsis thaliana] gi|51968476|dbj|BAD42930.1| putative protein [Arabidopsis thaliana] gi|62319991|dbj|BAD94109.1| putative protein [Arabidopsis thaliana] gi|332008662|gb|AED96045.1| ankyrin repeat-containing protein [Arabidopsis thaliana]

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/257 (47%), Positives = 167/257 (64%), Gaps = 22/257 (8%)

Query: 21  YDLSSDYKEQLKTWIHL-------QVIELLLGHQANASQGLEVNAINHSGVTAFDLLLIS 73
           +D+ +   EQ  T +HL       QVIE+L+      S+  EVNA+N  G++A DLL++ 
Sbjct: 144 FDVLNKKDEQGNTALHLATWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMF 203

Query: 74  PSEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSA---ETNPLRTKNDMTEFFKFKKG 130
           PSEAGDREI E L  AGA   RD   T+V+    +S     T   ++  ++ ++F FKK 
Sbjct: 204 PSEAGDREIYEKLIEAGAQRGRDIGTTNVERTTSTSTCQERTMKSQSHKELVKYFTFKKH 263

Query: 131 RDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPS------------SKAHIAG 178
           RDSP E RS+LLVVA+LVAT TFQ  + PPGGTWQD+S P+             +AH AG
Sbjct: 264 RDSPSEARSALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQNTTNVNTTNQQAHTAG 323

Query: 179 ESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVIS 238
           +SI G+ N +AF L++FFN++GF +SL M+NILT  FPL+F+LQ+C +AM F+++T + S
Sbjct: 324 QSIMGTFNGVAFTLFVFFNTIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMAS 383

Query: 239 IAPDEVKLFVILTISIL 255
           IAPD VKL+ IL  SIL
Sbjct: 384 IAPDHVKLYCILITSIL 400

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791225|emb|CAN70132.1| hypothetical protein VITISV_030400 [Vitis vinifera]

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 121/282 (42%), Positives = 169/282 (59%), Gaps = 50/282 (17%)

Query: 8   DITARKENTCQVS-----YDLSSDYKEQLKTW----IHLQVIELLLGHQANASQGL-EVN 57
           D+T +KE    ++     Y+      E++  W    I  QVIE LLG       G+ EVN
Sbjct: 133 DVTVQKEXALHLAVKNSQYEAVRVLVEKMNEWXNAEITWQVIEFLLGDATIPGSGVTEVN 192

Query: 58  AINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLRT 117
            +N+SG+TA D+LLI PSEA                                 ET P++ 
Sbjct: 193 LMNNSGLTALDVLLIFPSEA--------------------------------VETCPMQ- 219

Query: 118 KNDMTEFFKFKKGRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNS-------TP 170
            N++  +F+F +GRDSPGE RS+LLV+A LVAT T+Q  ++PPGG WQDNS       T 
Sbjct: 220 PNNLVNYFRFHRGRDSPGEARSALLVIAVLVATATYQVGLSPPGGVWQDNSGTNQSNSTA 279

Query: 171 SSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNF 230
           ++KAH AG+SI+ S   I+F +++ FNS+GF +SL MI+ILT KFP++FELQ+C LAM F
Sbjct: 280 TNKAHFAGQSIFSSLGIISFGIFVLFNSIGFSVSLYMISILTXKFPMRFELQICLLAMFF 339

Query: 231 TYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKR 272
           TY+TA+I+I+PD +K+F+I+  SILPL + L A   R   K+
Sbjct: 340 TYNTAIITISPDNLKIFLIVLTSILPLTVCLVAKWVREYVKK 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745677|emb|CBI40931.3| unnamed protein product [Vitis vinifera]

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 125/232 (53%), Gaps = 19/232 (8%)

Query: 38  QVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAG--DREIEEILRSAGATGMR 95
           Q IELLL     A + LEVNAIN  G+TAFDLL++ P E+G    E E + R  GA   R
Sbjct: 133 QAIELLLSCSDGAPEVLEVNAINKRGLTAFDLLMLCPCESGIVHAEAERLFRGIGAA--R 190

Query: 96  DDNQTSVDNLAVSSAETNPLRTKNDMT---EFFKFKKGRDSPGETRSSLLVVAALVATTT 152
           D     ++  + SS +   L   +D      +FKF+  RD+P   R +LLVVA L+A  T
Sbjct: 191 DGVLDDINTPSTSSRQATML--GDDWVTWRNYFKFQFDRDTPSNVREALLVVAVLIAAAT 248

Query: 153 FQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILT 212
           +Q   + P  TW        K     E I  S N + F  Y   N++GF +SL MI +LT
Sbjct: 249 YQTGQSIP--TWVQQ-----KGSDKFEMIRASHNLVLFLFYSLSNTVGFLVSLDMILVLT 301

Query: 213 TKFPLQFELQLCFLAMNFTYDTAVISIAPD-EVKLF-VILTISILPLAIGLT 262
           +KFP+ +EL +   AM   Y  +++ IAP   +K+   +L I++L LAI LT
Sbjct: 302 SKFPMCWELVVAVHAMAINYSISIVGIAPSGGMKIASAVLCITLL-LAIRLT 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495749|ref|XP_003635081.1| PREDICTED: uncharacterized protein LOC100852638 [Vitis vinifera]

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 127/255 (49%), Gaps = 38/255 (14%)

Query: 38  QVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAG--DREIEEILRSAGAT--G 93
           Q IELLL     A + LEVNAIN  G+TAFDLL++ P E+G    E E + R  GA   G
Sbjct: 194 QAIELLLSCSDGAPEVLEVNAINKRGLTAFDLLMLCPCESGIVHAEAERLFRGIGAARDG 253

Query: 94  MRDDNQTS---VDNLAVSSAETNPLRTKNDMT---------------------EFFKFKK 129
           + DD  ++     N    S + N L    ++                       +FKF+ 
Sbjct: 254 VLDDINSTPRPYHNHNPVSYQQNTLAGHTNIVAAPSTSSRQATMLGDDWVTWRNYFKFQF 313

Query: 130 GRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIA 189
            RD+P   R +LLVVA L+A  T+Q   + P  TW        K     E I  S N + 
Sbjct: 314 DRDTPSNVREALLVVAVLIAAATYQTGQSIP--TWVQQ-----KGSDKFEMIRASHNLVL 366

Query: 190 FCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPD-EVKLF- 247
           F  Y   N++GF +SL MI +LT+KFP+ +EL +   AM   Y  +++ IAP   +K+  
Sbjct: 367 FLFYSLSNTVGFLVSLDMILVLTSKFPMCWELVVAVHAMAINYSISIVGIAPSGGMKIAS 426

Query: 248 VILTISILPLAIGLT 262
            +L I++L LAI LT
Sbjct: 427 AVLCITLL-LAIRLT 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.786	0.509	0.448	2e-47
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.769	0.481	0.25	0.00085

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 108/241 (44%), Positives = 154/241 (63%)

Query:    31 LKTWI-HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89
             L TW  + QVIE+L+      S+  EVNA+N  G++A DLL++ PSEAGDREI E L  A
Sbjct:   160 LATWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIYEKLIEA 219

Query:    90 GATGMRDDNQTSVDNL-AVSSAETNPLRTKN--DMTEFFKFKKGRDSPGETRSSXXXXXX 146
             GA   RD   T+V+   + S+ +   +++++  ++ ++F FKK RDSP E RS+      
Sbjct:   220 GAQRGRDIGTTNVERTTSTSTCQERTMKSQSHKELVKYFTFKKHRDSPSEARSALLVVAS 279

Query:   147 XXXXXXFQFCVNPPGGTWQDNSTPS------------SKAHIAGESIWGSTNTIAFCLYM 194
                   FQ  + PPGGTWQD+S P+             +AH AG+SI G+ N +AF L++
Sbjct:   280 LVATATFQASLTPPGGTWQDSSIPAVSQNTTNVNTTNQQAHTAGQSIMGTFNGVAFTLFV 339

Query:   195 FFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISI 254
             FFN++GF +SL M+NILT  FPL+F+LQ+C +AM F+++T + SIAPD VKL+ IL  SI
Sbjct:   340 FFNTIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMASIAPDHVKLYCILITSI 399

Query:   255 L 255
             L
Sbjct:   400 L 400

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
 Identities = 63/252 (25%), Positives = 108/252 (42%)

Query:    35 IHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94
             I+ Q ++LLL      S  + VN  N +G+T FD+ ++      +REIE +++  G  G 
Sbjct:   201 INRQAMKLLL-----ESSKINVNIENKNGLTVFDIAVLH----NNREIERMVKRHG--GK 249

Query:    95 RDDN----QTSVDNLAVSSAETNPLRTKNDMTEFFKFKKGRDSPGETRSSXXXXXXXXXX 150
             R  +    +T+ D LA   +     RTK     F+ +        E R++          
Sbjct:   250 RSVSLVKIKTTSDILASQLSWRESRRTKK--IRFYSWISE-----ERRNALLVVATLIVT 302

Query:   151 XXFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGST--NTIAFCLYMFFNSLGFKLSLQM- 207
               +Q  + PPGG   D      K+  +G    GS   + + F     +NS GF  +++M 
Sbjct:   303 ATYQTVLQPPGGV-SDGG--GQKSGTSGPKA-GSVVMDEVYFIWLWLWNSAGFCFAIEMM 358

Query:   208 INILTTKFPLQFELQLCFLAMNFTYDTAVISIAPDEVKLFVILTI-SILPLAI-GLTAYC 265
             I +L+      F     F+ M   Y  A   I P+  + + I  + +I+ L I GL  + 
Sbjct:   359 IRLLSLGQESMFWYYPLFVPMVLAYSVAGDVIKPN-ARAYTIAGVGAIVVLIIWGLVVWF 417

Query:   266 FRLQQKRQRTER 277
             +   Q ++  +R
Sbjct:   418 WEWVQSKRTKQR 429


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      286       274   0.00078  115 3  11 22  0.48    33
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  194 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.31u 0.14s 22.45t   Elapsed:  00:00:01
  Total cpu time:  22.31u 0.14s 22.45t   Elapsed:  00:00:01
  Start:  Sat May 11 16:23:03 2013   End:  Sat May 11 16:23:04 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-14

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 67.5 bits (166), Expect = 2e-14
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 136 ETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMF 195
           +TR+SLLVVA L+AT TF     PPGG WQD+       H AG  I  +     F  +  
Sbjct: 6   KTRNSLLVVATLIATVTFAAGFTPPGGYWQDDG-----GHHAGTPIL-AGKPRRFKAFFV 59

Query: 196 FNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFT 231
            N++ F  SL  + +L    P         LA+   
Sbjct: 60  SNTIAFVASLVAVILLLYIVPSFSRRLPRLLALLTL 95

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PF13962	113	PGG: Domain of unknown function	99.94
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.18
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.02
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.01
KOG4412	226	consensus 26S proteasome regulatory complex, subun	98.96
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.87
PHA02736	154	Viral ankyrin protein; Provisional	98.85
PHA02743	166	Viral ankyrin protein; Provisional	98.77
PHA02730	672	ankyrin-like protein; Provisional	98.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	98.73
PHA02946	446	ankyin-like protein; Provisional	98.66
PHA02741	169	hypothetical protein; Provisional	98.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.62
PHA02795	437	ankyrin-like protein; Provisional	98.59
PHA02741	169	hypothetical protein; Provisional	98.58
PHA02743	166	Viral ankyrin protein; Provisional	98.56
PHA03095	471	ankyrin-like protein; Provisional	98.52
PHA02798	489	ankyrin-like protein; Provisional	98.51
PHA02989	494	ankyrin repeat protein; Provisional	98.49
PHA02875	413	ankyrin repeat protein; Provisional	98.49
PHA02791	284	ankyrin-like protein; Provisional	98.48
PHA02884	300	ankyrin repeat protein; Provisional	98.48
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	98.46
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.43
PHA02791	284	ankyrin-like protein; Provisional	98.43
PHA03100	480	ankyrin repeat protein; Provisional	98.41
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.4
PHA02878	477	ankyrin repeat protein; Provisional	98.39
PHA02878	477	ankyrin repeat protein; Provisional	98.38
PHA02736	154	Viral ankyrin protein; Provisional	98.38
PHA02874	434	ankyrin repeat protein; Provisional	98.36
PHA02859	209	ankyrin repeat protein; Provisional	98.36
PHA03095	471	ankyrin-like protein; Provisional	98.35
PHA02859	209	ankyrin repeat protein; Provisional	98.35
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.35
PHA02875	413	ankyrin repeat protein; Provisional	98.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.35
KOG0510	929	consensus Ankyrin repeat protein [General function	98.34
PHA02874	434	ankyrin repeat protein; Provisional	98.33
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.31
PF13606	30	Ank_3: Ankyrin repeat	98.31
PHA02946	446	ankyin-like protein; Provisional	98.3
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	98.28
PHA02798	489	ankyrin-like protein; Provisional	98.27
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.24
KOG0508	615	consensus Ankyrin repeat protein [General function	98.22
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	98.21
PHA02989	494	ankyrin repeat protein; Provisional	98.21
PHA03100	480	ankyrin repeat protein; Provisional	98.19
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.17
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.17
PHA02730	672	ankyrin-like protein; Provisional	98.16
KOG0510	929	consensus Ankyrin repeat protein [General function	98.16
KOG0514	452	consensus Ankyrin repeat protein [General function	98.15
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.13
PHA02884	300	ankyrin repeat protein; Provisional	98.12
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.11
KOG0514	452	consensus Ankyrin repeat protein [General function	98.11
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.1
PHA02876	682	ankyrin repeat protein; Provisional	98.03
PHA02917	661	ankyrin-like protein; Provisional	98.01
PHA02917	661	ankyrin-like protein; Provisional	98.01
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.0
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.99
PHA02876	682	ankyrin repeat protein; Provisional	97.99
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	97.98
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	97.9
PHA02792	631	ankyrin-like protein; Provisional	97.89
PHA02795	437	ankyrin-like protein; Provisional	97.86
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	97.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	97.81
KOG0522	560	consensus Ankyrin repeat protein [General function	97.81
PHA02792	631	ankyrin-like protein; Provisional	97.75
TIGR00870	743	trp transient-receptor-potential calcium channel p	97.72
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	97.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	97.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	97.67
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	97.64
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.53
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	97.39
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.34
KOG0508	615	consensus Ankyrin repeat protein [General function	97.24
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.16
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	97.12
PF13606	30	Ank_3: Ankyrin repeat	97.01
TIGR00870	743	trp transient-receptor-potential calcium channel p	96.91
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	96.89
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	96.88
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	96.87
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	96.79
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	96.63
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	96.62
KOG2384	223	consensus Major histocompatibility complex protein	96.37
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	96.23
KOG0521	785	consensus Putative GTPase activating proteins (GAP	95.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	95.79
KOG0783	1267	consensus Uncharacterized conserved protein, conta	95.61
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.59
KOG0520	975	consensus Uncharacterized conserved protein, conta	94.98
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	94.66
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	94.61
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	94.15
KOG2505	591	consensus Ankyrin repeat protein [General function	94.1
KOG0511	516	consensus Ankyrin repeat protein [General function	93.6
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	93.51
KOG0520	975	consensus Uncharacterized conserved protein, conta	92.91
KOG0521	785	consensus Putative GTPase activating proteins (GAP	91.53
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	91.25
KOG0522	560	consensus Ankyrin repeat protein [General function	90.87
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	89.96
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	88.11
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	81.85

>PF13962 PGG: Domain of unknown function

Probab=99.94  E-value=4.9e-27  Score=187.98  Aligned_cols=101  Identities=33%  Similarity=0.526  Sum_probs=86.7

Q ss_pred             CCCccchhhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHHHHH
Q 023199          131 RDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINI  210 (286)
Q Consensus       131 ~~~~~~~~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~~  210 (286)
                      +||++|+||+++||||||||+||||++|||||+||+++       .+|+|++.+ ++..|++|+++|++||++|++++++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~-------~~G~~il~~-~~~~f~~F~~~nt~af~~S~~~i~~   72 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD-------DAGTPILAK-KPSAFKAFLISNTIAFFSSLAAIFL   72 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-------CCCCchhcc-ccchhhhHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999862       479999984 3559999999999999999999999


Q ss_pred             Hhhch--hh----------HHHHHHHHHHHHHHHHhHhhhh
Q 023199          211 LTTKF--PL----------QFELQLCFLAMNFTYDTAVISI  239 (286)
Q Consensus       211 l~~~~--p~----------~~~l~~~~~~m~~ay~~~~~~i  239 (286)
                      ++++.  +.          ...+++++.+|+++|++|++++
T Consensus        73 l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   73 LISGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88533  11          1247788899999999998764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.18  E-value=2e-11  Score=85.40  Aligned_cols=45  Identities=22%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLL   70 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA   70 (286)
                      .+|..|+||||+|+++|+. ++++|+.      .+++++++|++|+||+|+|
T Consensus        11 ~~d~~G~T~LH~A~~~g~~~~v~~Ll~------~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   11 AQDKYGNTPLHWAARYGHSEVVRLLLQ------NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ---TTS--HHHHHHHHT-HHHHHHHHH------CT--TT---TTS--HHHH-
T ss_pred             CcCCCCCcHHHHHHHcCcHHHHHHHHH------CcCCCCCCcCCCCCHHHhC
Confidence            6899999999999999999 9999996      6999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.02  E-value=6.8e-10  Score=76.66  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHH
Q 023199           25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR   87 (286)
Q Consensus        25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~   87 (286)
                      |+||||.|++.|+. ++++|++      .++++|.+|.+|.||||+|+.    .++.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~------~~~din~~d~~g~t~lh~A~~----~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE------HGADINAQDEDGRTPLHYAAK----NGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH------TTSGTT-B-TTS--HHHHHHH----TT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----ccCHHHHHHHC
Confidence            79999999999999 9999998      489999999999999999976    56788888874

...

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=4.4e-10  Score=95.92  Aligned_cols=67  Identities=24%  Similarity=0.191  Sum_probs=47.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .||+.|+||||+|+..|+. +|+.|+.+     .++|+|+.|+.|.|+||+|+.    .+..||..+|+..|+....
T Consensus        67 dkDdaGWtPlhia~s~g~~evVk~Ll~r-----~~advna~tn~G~T~LHyAag----K~r~eIaqlLle~ga~i~~  134 (226)
T KOG4412|consen   67 DKDDAGWTPLHIAASNGNDEVVKELLNR-----SGADVNATTNGGQTCLHYAAG----KGRLEIAQLLLEKGALIRI  134 (226)
T ss_pred             CccccCCchhhhhhhcCcHHHHHHHhcC-----CCCCcceecCCCcceehhhhc----CChhhHHHHHHhcCCCCcc
Confidence            4677777777777777777 77777765     477777777777777777743    4456777777777766543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=2.7e-10  Score=97.16  Aligned_cols=73  Identities=14%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             CCcccccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc-CC
Q 023199           14 ENTCQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA-GA   91 (286)
Q Consensus        14 ~~~~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~-Ga   91 (286)
                      .+.++.+.|.||+||||+||+.|+. ++++|++.     .++.+|-+|..|+||||+|.+    .++.++++.|+.. |+
T Consensus        27 ~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-----~nv~~ddkDdaGWtPlhia~s----~g~~evVk~Ll~r~~a   97 (226)
T KOG4412|consen   27 PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-----PNVKPDDKDDAGWTPLHIAAS----NGNDEVVKELLNRSGA   97 (226)
T ss_pred             hhhhhccccccCCceeeeeeecCchhHHHHHHhc-----CCCCCCCccccCCchhhhhhh----cCcHHHHHHHhcCCCC
Confidence            3456677788999999999999999 99999986     799999999999999999965    5678899988865 66


Q ss_pred             CCCC
Q 023199           92 TGMR   95 (286)
Q Consensus        92 ~~~~   95 (286)
                      +...
T Consensus        98 dvna  101 (226)
T KOG4412|consen   98 DVNA  101 (226)
T ss_pred             Ccce
Confidence            5543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.87  E-value=6e-09  Score=78.48  Aligned_cols=60  Identities=23%  Similarity=0.281  Sum_probs=53.7

Q ss_pred             CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      |+||||+|+..|+. ++++|++      .+.++|.+|.+|+||||+|+.    .++.+++++|.++|++..
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLE------NGADINSQDKNGNTALHYAAE----NGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHH------TTTCTT-BSTTSSBHHHHHHH----TTHHHHHHHHHHTTT-TT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH------hcccccccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            89999999999999 9999999      489999999999999999976    678899999999998654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.85  E-value=7.8e-09  Score=86.05  Aligned_cols=65  Identities=15%  Similarity=0.213  Sum_probs=51.6

Q ss_pred             ccc-CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYD-LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD-~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      .+| .+|+||||+|+..++. ++++|+++     .++++|.+|+.|.||||+|..    .++.+++++|+..|++.
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~-----~g~d~n~~~~~g~tpL~~A~~----~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQ-----PGVNMEILNYAFKTPYYVACE----RHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhC-----CCCCCccccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence            455 4788888888888888 88888864     478888888888888888864    55778888888888754

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.77  E-value=2e-08  Score=85.26  Aligned_cols=65  Identities=25%  Similarity=0.348  Sum_probs=42.0

Q ss_pred             cccCCCChHHHHHHHhCcH-H---HHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHH-cCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-V---IELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRS-AGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-i---v~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~-~Ga~~   93 (286)
                      .+|.+|+||||+|+..++. .   +++|++      .|+++|.+| ..|.||||+|+.    .++.+++++|+. .|++.
T Consensus        52 ~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~------~Gadin~~d~~~g~TpLh~A~~----~g~~~iv~~Ll~~~gad~  121 (166)
T PHA02743         52 RYDHHGRQCTHMVAWYDRANAVMKIELLVN------MGADINARELGTGNTLLHIAAS----TKNYELAEWLCRQLGVNL  121 (166)
T ss_pred             ccCCCCCcHHHHHHHhCccCHHHHHHHHHH------cCCCCCCCCCCCCCcHHHHHHH----hCCHHHHHHHHhccCCCc
Confidence            3567777777777776654 3   566776      367777776 467777777754    445666676663 56655


Q ss_pred             C
Q 023199           94 M   94 (286)
Q Consensus        94 ~   94 (286)
                      .
T Consensus       122 ~  122 (166)
T PHA02743        122 G  122 (166)
T ss_pred             c
Confidence            4

>PHA02730 ankyrin-like protein; Provisional

Probab=98.77  E-value=1.3e-08  Score=103.07  Aligned_cols=69  Identities=17%  Similarity=0.165  Sum_probs=59.0

Q ss_pred             cccCCCChHHHHHHHhC---cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIH---LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~---~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ++|.+|+||||+|+..+   +. ++++|+++      |++++.+|++|+||||+|+..  ..++.|++++|+++|+....
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~------GAdin~kD~~G~TPLh~Aa~~--~~~~~eIv~~Ll~~~~~~~~  107 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSR------GVERLCRNNEGLTPLGVYSKR--KYVKSQIVHLLISSYSNASN  107 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC------CCCCcccCCCCCChHHHHHHc--CCCcHHHHHHHHhcCCCCCc
Confidence            68999999999999987   47 99999984      999999999999999998652  23478999999999876544


Q ss_pred             C
Q 023199           96 D   96 (286)
Q Consensus        96 ~   96 (286)
                      +
T Consensus       108 ~  108 (672)
T PHA02730        108 E  108 (672)
T ss_pred             c
Confidence            3

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=98.73  E-value=1.5e-08  Score=86.16  Aligned_cols=67  Identities=16%  Similarity=0.085  Sum_probs=61.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      .+|.||-||||-|+++|+. ++..|+.      .|++.+++.++|+||||-|    +++++.++...|+++|++....
T Consensus        92 trD~D~YTpLHRAaYn~h~div~~ll~------~gAn~~a~T~~GWTPLhSA----ckWnN~~va~~LLqhgaDVnA~  159 (228)
T KOG0512|consen   92 TRDEDEYTPLHRAAYNGHLDIVHELLL------SGANKEAKTNEGWTPLHSA----CKWNNFEVAGRLLQHGADVNAQ  159 (228)
T ss_pred             ccccccccHHHHHHhcCchHHHHHHHH------ccCCcccccccCccchhhh----hcccchhHHHHHHhccCccccc
Confidence            5899999999999999999 9999987      4999999999999999999    5688999999999999987653

>PHA02946 ankyin-like protein; Provisional

Probab=98.66  E-value=4.9e-08  Score=95.47  Aligned_cols=68  Identities=22%  Similarity=0.229  Sum_probs=58.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|++.++. ++++|+++      |+++|.+|++|.||||+|...  .....+++++|++.|++...
T Consensus        67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~~------GAdin~~d~~g~TpLh~A~~~--~~~~~e~v~lLl~~Gadin~  135 (446)
T PHA02946         67 ETDDDGNYPLHIASKINNNRIVAMLLTH------GADPNACDKQHKTPLYYLSGT--DDEVIERINLLVQYGAKINN  135 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHC------cCCCCCCCCCCCCHHHHHHHc--CCchHHHHHHHHHcCCCccc
Confidence            5899999999999999999 99999994      999999999999999998642  22356889999999987653

>PHA02741 hypothetical protein; Provisional

Probab=98.63  E-value=5.5e-08  Score=82.56  Aligned_cols=65  Identities=23%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             cccCCCChHHHHHHHhCc----H-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHH-cCCC
Q 023199           20 SYDLSSDYKEQLKTWIHL----Q-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRS-AGAT   92 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~----~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~-~Ga~   92 (286)
                      .+|..|+||||+|+..++    . ++++|++      .++++|.+|. +|+||||+|+.    .++.+++++|+. .|++
T Consensus        55 ~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~------~gadin~~~~~~g~TpLh~A~~----~~~~~iv~~Ll~~~g~~  124 (169)
T PHA02741         55 ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE------LGADINAQEMLEGDTALHLAAH----RRDHDLAEWLCCQPGID  124 (169)
T ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHHHHHH------cCCCCCCCCcCCCCCHHHHHHH----cCCHHHHHHHHhCCCCC
Confidence            588899999999999887    5 7788887      4889999885 89999999965    557789998886 5776


Q ss_pred             CC
Q 023199           93 GM   94 (286)
Q Consensus        93 ~~   94 (286)
                      ..
T Consensus       125 ~~  126 (169)
T PHA02741        125 LH  126 (169)
T ss_pred             CC
Confidence            54

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.62  E-value=4.7e-08  Score=75.18  Aligned_cols=64  Identities=16%  Similarity=0.216  Sum_probs=58.5

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      ..|++|||+|+..|+. +.++|++      .|++++.+|+.|-|||--|+-    .++.+++++|++.||++...
T Consensus        32 ~ggR~plhyAAD~GQl~ilefli~------iGA~i~~kDKygITPLLsAvw----EGH~~cVklLL~~GAdrt~~   96 (117)
T KOG4214|consen   32 YGGRTPLHYAADYGQLSILEFLIS------IGANIQDKDKYGITPLLSAVW----EGHRDCVKLLLQNGADRTIH   96 (117)
T ss_pred             hCCcccchHhhhcchHHHHHHHHH------hccccCCccccCCcHHHHHHH----HhhHHHHHHHHHcCccccee
Confidence            5799999999999999 9999998      599999999999999998864    67999999999999987653

>PHA02795 ankyrin-like protein; Provisional

Probab=98.59  E-value=1.1e-07  Score=92.39  Aligned_cols=69  Identities=22%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCC----CCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPS----EAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~----~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ++|.+|+||||+|+..|+. ++++|++      .|+++|.+|..|.||||+|+....    ...+.+++++|++.|+...
T Consensus       216 ~kD~~G~TpLh~Aa~~g~~eiVelLL~------~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        216 QLDAGGRTLLYRAIYAGYIDLVSWLLE------NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            6899999999999999999 9999998      499999999999999999986321    1235789999999888554

>PHA02741 hypothetical protein; Provisional

Probab=98.58  E-value=1.5e-07  Score=79.87  Aligned_cols=58  Identities=21%  Similarity=0.263  Sum_probs=29.8

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      +|+||||+|+..++. ++++|+++     .+++++.+|.+|.||||+|..    .++.++.++|.+.+
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~-----~g~~~~~~n~~g~tpL~~A~~----~~~~~iv~~L~~~~  155 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQ-----PGIDLHFCNADNKSPFELAID----NEDVAMMQILREIV  155 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC-----CCCCCCcCCCCCCCHHHHHHH----CCCHHHHHHHHHHH
Confidence            455555555555555 55555542     245555555555555555532    33445555555444

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.56  E-value=1.6e-07  Score=79.73  Aligned_cols=19  Identities=16%  Similarity=0.322  Sum_probs=9.8

Q ss_pred             CccccccCCCCCCHHHHHh
Q 023199           53 GLEVNAINHSGVTAFDLLL   71 (286)
Q Consensus        53 ~v~vn~~N~~G~TaLdiA~   71 (286)
                      +.+++.+|.+|+||||+|+
T Consensus        47 g~~~~~~d~~g~t~Lh~Aa   65 (166)
T PHA02743         47 GHLLHRYDHHGRQCTHMVA   65 (166)
T ss_pred             chhhhccCCCCCcHHHHHH
Confidence            4445555555555555554

>PHA03095 ankyrin-like protein; Provisional

Probab=98.52  E-value=1.7e-07  Score=91.13  Aligned_cols=66  Identities=18%  Similarity=0.092  Sum_probs=49.3

Q ss_pred             cccCCCChHHHHHHHhCcH---HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ---VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~---iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++.   .++.|+.      .++++|.+|.+|+||||+|+.    .++.+++++|++.|++...
T Consensus       217 ~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~------~g~din~~d~~g~TpLh~A~~----~~~~~~v~~LL~~gad~n~  285 (471)
T PHA03095        217 ATDMLGNTPLHSMATGSSCKRSLVLPLLI------AGISINARNRYGQTPLHYAAV----FNNPRACRRLIALGADINA  285 (471)
T ss_pred             ccCCCCCCHHHHHHhcCCchHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            5678888888888877753   5666776      478888888888888888854    5567788888888887653

>PHA02798 ankyrin-like protein; Provisional

Probab=98.51  E-value=1.5e-07  Score=92.68  Aligned_cols=65  Identities=15%  Similarity=0.034  Sum_probs=57.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ++|..|+||||+|+..++. ++++|++      .|+++|.+|..|+|||++|..    .++.++++.|++.|+...
T Consensus       253 ~~d~~G~TPL~~A~~~~~~~~v~~LL~------~GAdin~~d~~G~TpL~~A~~----~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        253 QVDELGFNPLYYSVSHNNRKIFEYLLQ------LGGDINIITELGNTCLFTAFE----NESKFIFNSILNKKPNKN  318 (489)
T ss_pred             CcCcCCccHHHHHHHcCcHHHHHHHHH------cCCcccccCCCCCcHHHHHHH----cCcHHHHHHHHccCCCHH
Confidence            5789999999999999999 9999998      599999999999999999965    567889999998776543

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.49  E-value=2.4e-07  Score=91.41  Aligned_cols=61  Identities=11%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|..|.||||+|..    .++.++++.|++.+
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~v~~LL~------~Gadin~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~  312 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEAFNYLLK------LGDDIYNVSKDGDTVLTYAIK----HGNIDMLNRILQLK  312 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHHHHHHHH------cCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHhcC
Confidence            5789999999999999999 9999998      499999999999999999975    56788999888765

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.49  E-value=2.8e-07  Score=88.40  Aligned_cols=64  Identities=22%  Similarity=0.183  Sum_probs=37.9

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|.+|+||||+|+..|+. ++++|+++      ++++|.+|..|.||||+|+.    .++.+++++|+..|++..
T Consensus       131 ~~~~g~tpLh~A~~~~~~~~v~~Ll~~------g~~~~~~d~~g~TpL~~A~~----~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        131 PNTDKFSPLHLAVMMGDIKGIELLIDH------KACLDIEDCCGCTPLIIAMA----KGDIAICKMLLDSGANID  195 (413)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCC
Confidence            455566666666665655 66666652      55666666666666666643    345566666666666544

>PHA02791 ankyrin-like protein; Provisional

Probab=98.48  E-value=2.7e-07  Score=85.24  Aligned_cols=62  Identities=15%  Similarity=-0.080  Sum_probs=47.8

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCH-HHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTA-FDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~Ta-LdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .|+||||+|+..|+. ++++|+++      |+++|.+|+.|.|| ||+|+.    .++.+++++|+++|++...
T Consensus       159 ~g~TpLh~Aa~~g~~eiv~lLL~~------gAd~n~~d~~g~t~~L~~Aa~----~~~~e~v~lLl~~Ga~in~  222 (284)
T PHA02791        159 ILLSCIHITIKNGHVDMMILLLDY------MTSTNTNNSLLFIPDIKLAID----NKDLEMLQALFKYDINIYS  222 (284)
T ss_pred             cCccHHHHHHHcCCHHHHHHHHHC------CCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHCCCCCcc
Confidence            478888888888888 88888874      77888888888876 888854    5677888888888877643

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.48  E-value=3.2e-07  Score=85.30  Aligned_cols=64  Identities=22%  Similarity=0.137  Sum_probs=51.0

Q ss_pred             cCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           22 DLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        22 D~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      |.+|.||||+|+..++. ++++|+++      |+++|.++ ..|.||||+|+.    .++.+++++|+..|++...
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~------GADVN~~~~~~g~TpLh~Aa~----~~~~eivklLL~~GAdin~  132 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRY------GADVNRYAEEAKITPLYISVL----HGCLKCLEILLSYGADINI  132 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc------CCCcCcccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            56888888888888888 88888884      88888864 578888888864    5677888888888876654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=98.46  E-value=2.2e-07  Score=98.35  Aligned_cols=67  Identities=22%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      .++..|.||||.|+.+|+. +|++|+++      |++++++++.|+||||.|..    .++.+|.++|.++||...-.
T Consensus       535 ~~~~r~~TpLh~A~~~g~v~~VkfLLe~------gAdv~ak~~~G~TPLH~Aa~----~G~~~i~~LLlk~GA~vna~  602 (1143)
T KOG4177|consen  535 LRTGRGYTPLHVAVHYGNVDLVKFLLEH------GADVNAKDKLGYTPLHQAAQ----QGHNDIAELLLKHGASVNAA  602 (1143)
T ss_pred             hhcccccchHHHHHhcCCchHHHHhhhC------CccccccCCCCCChhhHHHH----cChHHHHHHHHHcCCCCCcc
Confidence            5778899999999999999 99999995      99999999999999999965    66899999999999987644

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.43  E-value=2.9e-07  Score=94.96  Aligned_cols=70  Identities=16%  Similarity=0.065  Sum_probs=57.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HH-----HHHhhCccccccCccccccCCCCCCHHHHHhhCCC-CCCcHHHHHHHHHcCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VI-----ELLLGHQANASQGLEVNAINHSGVTAFDLLLISPS-EAGDREIEEILRSAGAT   92 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv-----~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~-~~~~~ei~~~L~~~Ga~   92 (286)
                      .+|.+|+||||+|+..++. .+     ++|++      .|+++|.+|++|+||||+|..... +..+.+++++|++.|+.
T Consensus       492 ~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~------~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~  565 (764)
T PHA02716        492 VCETSGMTPLHVSIISHTNANIVMDSFVYLLS------IQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPN  565 (764)
T ss_pred             ccCCCCCCHHHHHHHcCCccchhHHHHHHHHh------CCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCC
Confidence            4688999999999998876 55     99998      599999999999999999986322 12355999999998876


Q ss_pred             CCC
Q 023199           93 GMR   95 (286)
Q Consensus        93 ~~~   95 (286)
                      ...
T Consensus       566 ~~~  568 (764)
T PHA02716        566 VDI  568 (764)
T ss_pred             cch
Confidence            543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=2.6e-07  Score=89.71  Aligned_cols=65  Identities=15%  Similarity=0.114  Sum_probs=57.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +.+++|-|+||-|+-.||. +|+||+.      .|+|+|+.|.+|+||||.|+.    .++.-+.+.|...|+..-
T Consensus       578 qpNdEGITaLHNAiCaghyeIVkFLi~------~ganVNa~DSdGWTPLHCAAS----CNnv~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  578 QPNDEGITALHNAICAGHYEIVKFLIE------FGANVNAADSDGWTPLHCAAS----CNNVPMCKQLVESGAAVF  643 (752)
T ss_pred             CCCccchhHHhhhhhcchhHHHHHHHh------cCCcccCccCCCCchhhhhhh----cCchHHHHHHHhccceEE
Confidence            4678999999999999999 9999998      699999999999999999965    456778899999987653

>PHA02791 ankyrin-like protein; Provisional

Probab=98.43  E-value=4.5e-07  Score=83.75  Aligned_cols=61  Identities=16%  Similarity=0.075  Sum_probs=31.2

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      +|.+|+||||+|+..++. ++++|+++      ++++|..+  |.||||+|+.    .++.+++++|+..|++.
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~------ga~~n~~d--~~TpLh~Aa~----~g~~eiV~lLL~~Gadv   87 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNA------GALKNLLE--NEFPLHQAAT----LEDTKIVKILLFSGMDD   87 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHC------cCCCcCCC--CCCHHHHHHH----CCCHHHHHHHHHCCCCC
Confidence            455566666666665555 55555553      44444332  4455555532    33445555555555443

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.41  E-value=4.8e-07  Score=88.17  Aligned_cols=65  Identities=18%  Similarity=0.251  Sum_probs=55.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|..|.||+|+|..    .++.+++++|++.|++..
T Consensus       245 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~------~gad~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        245 IKDVYGFTPLHYAVYNNNPEFVKYLLD------LGANPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCCHH
Confidence            4788999999999999999 9999998      488999999999999999965    567789999999887443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.40  E-value=2.8e-07  Score=57.17  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH   61 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~   61 (286)
                      +|+||||+|+..++. ++++|++      .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~------~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK------HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH------TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH------CcCCCCCCCC
Confidence            699999999999999 9999999      4999999875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.39  E-value=5.6e-07  Score=88.29  Aligned_cols=58  Identities=24%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      |+||||+|+..++. ++++|++      .|+++|..|..|.||||+|+.    .++.++++.|+..|++
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~------~gad~n~~d~~g~tpLh~A~~----~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLS------YGANVNIPDKTNNSPLHHAVK----HYNKPIVHILLENGAS  226 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHH----hCCHHHHHHHHHcCCC
Confidence            55555555554444 5555544      244444444445555554432    2334444444444444

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.38  E-value=6.5e-07  Score=87.81  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=59.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|..|.||||+|+..   .++.+++++|++.|++...
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~------~ga~in~~d~~g~TpLh~A~~~---~~~~~iv~~Ll~~gadvn~  263 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHYNKPIVHILLE------NGASTDARDKCGNTPLHISVGY---CKDYDILKLLLEHGVDVNA  263 (477)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHHh---cCCHHHHHHHHHcCCCCCc
Confidence            5789999999999999999 9999998      4999999999999999999741   2467999999999987654

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.38  E-value=2.5e-07  Score=76.97  Aligned_cols=65  Identities=15%  Similarity=0.213  Sum_probs=51.0

Q ss_pred             cccCCCChHHHHHHHhCcH----HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHH-cCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ----VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRS-AGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~----iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~-~Ga~~   93 (286)
                      .+|.+|.||||+|+..++.    ++++|++      .|+++|.+|+ +|+||||+|+.    .++.+++++|+. .|++.
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~------~gadin~~~~~~g~T~Lh~A~~----~~~~~i~~~Ll~~~g~d~  119 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLME------WGADINGKERVFGNTPLHIAVY----TQNYELATWLCNQPGVNM  119 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHH------cCCCccccCCCCCCcHHHHHHH----hCCHHHHHHHHhCCCCCC
Confidence            4688899999999988765    3677887      4889999984 89999999965    567788888886 46654


Q ss_pred             C
Q 023199           94 M   94 (286)
Q Consensus        94 ~   94 (286)
                      .
T Consensus       120 n  120 (154)
T PHA02736        120 E  120 (154)
T ss_pred             c
Confidence            3

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.36  E-value=8.6e-07  Score=85.88  Aligned_cols=65  Identities=17%  Similarity=0.101  Sum_probs=55.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|.+|.||||+|..    .++.+++++|++.|+...
T Consensus       119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~------~gad~n~~d~~g~tpLh~A~~----~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        119 IKDAELKTFLHYAIKKGDLESIKMLFE------YGADVNIEDDNGCYPIHIAIK----HNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             CCCCCCccHHHHHHHCCCHHHHHHHHh------CCCCCCCcCCCCCCHHHHHHH----CCcHHHHHHHHHCCCCCC
Confidence            4688899999999999999 9999998      488999999999999999965    567789999999887654

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.36  E-value=1.2e-06  Score=76.97  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=48.7

Q ss_pred             cccCCCChHHHHHHHhC--cH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIH--LQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~--~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|..|.||||+|+..+  +. ++++|++      .|+++|.++ ..|.||||+|... ...++.+++++|+++|++...
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~------~gadvn~~~~~~g~TpLh~a~~~-~~~~~~eiv~~Ll~~gadin~  118 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILKFLIE------NGADVNFKTRDNNLSALHHYLSF-NKNVEPEILKILIDSGSSITE  118 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHHHHHH------CCCCCCccCCCCCCCHHHHHHHh-CccccHHHHHHHHHCCCCCCC
Confidence            36777888888888654  66 8888887      478888876 4788888876531 112356788888888877654

>PHA03095 ankyrin-like protein; Provisional

Probab=98.35  E-value=9.5e-07  Score=85.83  Aligned_cols=67  Identities=22%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             cccCCCChHHHHHHHhCc-H-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHL-Q-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~-~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++ . ++++|++      .|+++|.+|..|.||||+|..  ....+.+++++|++.|++..
T Consensus        78 ~~~~~g~TpLh~A~~~~~~~~iv~lLl~------~ga~in~~~~~g~tpLh~a~~--~~~~~~~iv~~Ll~~gad~~  146 (471)
T PHA03095         78 APERCGFTPLHLYLYNATTLDVIKLLIK------AGADVNAKDKVGRTPLHVYLS--GFNINPKVIRLLLRKGADVN  146 (471)
T ss_pred             CCCCCCCCHHHHHHHcCCcHHHHHHHHH------cCCCCCCCCCCCCCHHHHHhh--CCcCCHHHHHHHHHcCCCCC
Confidence            467788888888888884 6 8888887      488888888888888888863  23446678888888887654

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.35  E-value=9.1e-07  Score=77.84  Aligned_cols=67  Identities=7%  Similarity=0.104  Sum_probs=52.2

Q ss_pred             cc-CCCChHHHHHHHhC---cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           21 YD-LSSDYKEQLKTWIH---LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        21 kD-~~GnTpLHlAa~~~---~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +| .+|.||||+|+..+   +. ++++|++      .|+++|.+|.+|.||||+|...  ..++.+++++|++.|++...
T Consensus        82 ~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~------~gadin~~d~~G~TpLh~a~~~--~~~~~~iv~~Li~~gadin~  153 (209)
T PHA02859         82 KTRDNNLSALHHYLSFNKNVEPEILKILID------SGSSITEEDEDGKNLLHMYMCN--FNVRINVIKLLIDSGVSFLN  153 (209)
T ss_pred             cCCCCCCCHHHHHHHhCccccHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHHh--ccCCHHHHHHHHHcCCCccc
Confidence            44 57899999987643   56 8899998      4899999999999999988641  23467899999999988653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.35  E-value=7.4e-07  Score=93.34  Aligned_cols=62  Identities=18%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA   91 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga   91 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|.+|.+|+||||.|..    .++.+++++|...++
T Consensus       553 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~------~gadin~~d~~G~TpL~~A~~----~g~~~iv~~L~~~~~  615 (823)
T PLN03192        553 IGDSKGRTPLHIAASKGYEDCVLVLLK------HACNVHIRDANGNTALWNAIS----AKHHKIFRILYHFAS  615 (823)
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHh------cCCCCCCcCCCCCCHHHHHHH----hCCHHHHHHHHhcCc
Confidence            5799999999999999999 9999998      499999999999999999965    345555555554443

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.35  E-value=9.6e-07  Score=84.69  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .|.+|+||||+|+..++. ++++|++      .|+++|..|.+|.||||+|..    .++.++++.|+++|+...
T Consensus        98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~------~gad~~~~~~~g~tpLh~A~~----~~~~~~v~~Ll~~g~~~~  162 (413)
T PHA02875         98 FYKDGMTPLHLATILKKLDIMKLLIA------RGADPDIPNTDKFSPLHLAVM----MGDIKGIELLIDHKACLD  162 (413)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHh------CCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCCC
Confidence            467899999999999999 9999998      489999999999999999975    567899999999998654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.35  E-value=8.6e-07  Score=90.81  Aligned_cols=60  Identities=20%  Similarity=0.243  Sum_probs=55.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|.+|.+|.||||+|..    .++.+++++|+.+
T Consensus       110 ~~d~~G~TpLh~Aa~~g~~eiv~~LL~------~Gadvn~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~  170 (664)
T PTZ00322        110 CRDYDGRTPLHIACANGHVQVVRVLLE------FGADPTLLDKDGKTPLELAEE----NGFREVVQLLSRH  170 (664)
T ss_pred             CcCCCCCcHHHHHHHCCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----CCcHHHHHHHHhC
Confidence            4789999999999999999 9999999      499999999999999999965    6788999999988

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.34  E-value=5.4e-07  Score=91.36  Aligned_cols=73  Identities=23%  Similarity=0.156  Sum_probs=61.3

Q ss_pred             CCCcccccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCcccc---ccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199           13 KENTCQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVN---AINHSGVTAFDLLLISPSEAGDREIEEILRS   88 (286)
Q Consensus        13 ~~~~~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn---~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~   88 (286)
                      .++.+..+.|-.|+||||+|+..|+. ++++|+.+      |++.+   ..|.+|+||||.|+.    +++..++++|++
T Consensus       329 ~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~------GA~~~~~~e~D~dg~TaLH~Aa~----~g~~~av~~Li~  398 (929)
T KOG0510|consen  329 SDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK------GALFLNMSEADSDGNTALHLAAK----YGNTSAVQKLIS  398 (929)
T ss_pred             cCccccccccccCCCchhhhhhcCHHHHHHHHHhc------ChhhhcccccccCCchhhhHHHH----hccHHHHHHHHH
Confidence            33444447899999999999999999 99999985      65555   559999999999965    788999999999


Q ss_pred             cCCCCCC
Q 023199           89 AGATGMR   95 (286)
Q Consensus        89 ~Ga~~~~   95 (286)
                      +||+.+.
T Consensus       399 ~Ga~I~~  405 (929)
T KOG0510|consen  399 HGADIGV  405 (929)
T ss_pred             cCCceee
Confidence            9999843

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.33  E-value=1.1e-06  Score=85.11  Aligned_cols=65  Identities=22%  Similarity=0.213  Sum_probs=58.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|+++      |++++..|..|.||||+|+.    .++.+++++|++.|+...
T Consensus       152 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~------g~~~n~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~g~~i~  217 (434)
T PHA02874        152 IEDDNGCYPIHIAIKHNFFDIIKLLLEK------GAYANVKDNNGESPLHNAAE----YGDYACIKLLIDHGNHIM  217 (434)
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCc
Confidence            4789999999999999999 99999984      89999999999999999975    678899999999998654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.31  E-value=5.2e-07  Score=82.25  Aligned_cols=64  Identities=27%  Similarity=0.275  Sum_probs=51.4

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+...+||||+|+.+|+. +|..|++      .++|+|+.|..|+||||+|    +-++...|.+-|+.+||..+
T Consensus        63 tnmgddtplhlaaahghrdivqkll~------~kadvnavnehgntplhya----cfwgydqiaedli~~ga~v~  127 (448)
T KOG0195|consen   63 TNMGDDTPLHLAAAHGHRDIVQKLLS------RKADVNAVNEHGNTPLHYA----CFWGYDQIAEDLISCGAAVN  127 (448)
T ss_pred             ccCCCCcchhhhhhcccHHHHHHHHH------HhcccchhhccCCCchhhh----hhhcHHHHHHHHHhccceee
Confidence            345567888888888888 8888887      4889999999999999999    44777788888888888754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.31  E-value=6.1e-07  Score=54.76  Aligned_cols=29  Identities=28%  Similarity=0.340  Sum_probs=26.1

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccc
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNA   58 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~   58 (286)
                      +|+||||+|++.|+. ++++|+++      |+|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~------gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH------GADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc------CCCCCC
Confidence            699999999999999 99999995      788774

>PHA02946 ankyin-like protein; Provisional

Probab=98.30  E-value=1.4e-06  Score=85.35  Aligned_cols=61  Identities=21%  Similarity=0.177  Sum_probs=36.8

Q ss_pred             ccCCCChHHHHHHHhC--cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCc-HHHHHHHHHcCCC
Q 023199           21 YDLSSDYKEQLKTWIH--LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGD-REIEEILRSAGAT   92 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~--~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~-~ei~~~L~~~Ga~   92 (286)
                      +|.+|+||||+|+..+  +. ++++|+.       ++++|.+|++|.||||+|+.    .++ .++.++|+++|+.
T Consensus       204 ~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-------gadin~~d~~G~TpLh~A~~----~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        204 PDHDGNTPLHIVCSKTVKNVDIINLLLP-------STDVNKQNKFGDSPLTLLIK----TLSPAHLINKLLSTSNV  268 (446)
T ss_pred             cCCCCCCHHHHHHHcCCCcHHHHHHHHc-------CCCCCCCCCCCCCHHHHHHH----hCChHHHHHHHHhCCCC
Confidence            5666777777776654  44 6666653       56666667777777776653    222 3566666666643

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=98.28  E-value=6.5e-07  Score=88.62  Aligned_cols=64  Identities=23%  Similarity=0.223  Sum_probs=36.7

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .|.+|-|+||+||.+++. ++++|+++      |+++|... .-|-||||.|.+    .++..++++|+++||++.
T Consensus        74 ~D~~g~tlLHWAAiNNrl~v~r~li~~------gadvn~~gG~l~stPLHWAar----~G~~~vv~lLlqhGAdpt  139 (600)
T KOG0509|consen   74 PDREGVTLLHWAAINNRLDVARYLISH------GADVNAIGGVLGSTPLHWAAR----NGHISVVDLLLQHGADPT  139 (600)
T ss_pred             CCcCCccceeHHHHcCcHHHHHHHHHc------CCCccccCCCCCCCcchHHHH----cCcHHHHHHHHHcCCCCc
Confidence            455666666666665555 66666653      55555555 455566666643    445555666666665543

>PHA02798 ankyrin-like protein; Provisional

Probab=98.27  E-value=1.6e-06  Score=85.40  Aligned_cols=68  Identities=15%  Similarity=0.128  Sum_probs=44.8

Q ss_pred             cccCCCChHHHHHHHhC---cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIH---LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~---~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..+   +. ++++|++      .|+++|.+|.+|.||||+|..... ..+.+++++|++.|++..
T Consensus       104 ~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~------~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~vv~~Ll~~gadin  175 (489)
T PHA02798        104 KKNSDGETPLYCLLSNGYINNLEILLFMIE------NGADTTLLDKDGFTMLQVYLQSNH-HIDIEIIKLLLEKGVDIN  175 (489)
T ss_pred             CCCCCcCcHHHHHHHcCCcChHHHHHHHHH------cCCCccccCCCCCcHHHHHHHcCC-cchHHHHHHHHHhCCCcc
Confidence            36677777777777654   45 7777776      377777777777777777754211 123677777777776643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.24  E-value=1.1e-06  Score=91.98  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCcccc-------------------------ccCccccccCCCCCCHHHHHhhC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANA-------------------------SQGLEVNAINHSGVTAFDLLLIS   73 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~-------------------------~~~v~vn~~N~~G~TaLdiA~~~   73 (286)
                      .+|.+|+||||+|+..|+. ++++|++..+..                         ..|+++|.+|++|+||||+|.. 
T Consensus       586 ~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~-  664 (823)
T PLN03192        586 IRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA-  664 (823)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-
Confidence            4688888888877666665 555544321100                         1589999999999999999965 


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCC
Q 023199           74 PSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        74 ~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                         .++.+++++|+.+||+...
T Consensus       665 ---~g~~~iv~~Ll~~GAdv~~  683 (823)
T PLN03192        665 ---EDHVDMVRLLIMNGADVDK  683 (823)
T ss_pred             ---CCcHHHHHHHHHcCCCCCC
Confidence               6788999999999998654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.22  E-value=6.4e-07  Score=86.19  Aligned_cols=66  Identities=26%  Similarity=0.238  Sum_probs=59.8

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      .|.-|+|.||+||++|+. ++++|++      .|+|+|.++..|+||||.+.    +.++.+|+++|+++|+....+
T Consensus       146 anrhGhTcLmIa~ykGh~~I~qyLle------~gADvn~ks~kGNTALH~ca----EsG~vdivq~Ll~~ga~i~~d  212 (615)
T KOG0508|consen  146 ANRHGHTCLMIACYKGHVDIAQYLLE------QGADVNAKSYKGNTALHDCA----ESGSVDIVQLLLKHGAKIDVD  212 (615)
T ss_pred             cccCCCeeEEeeeccCchHHHHHHHH------hCCCcchhcccCchHHHhhh----hcccHHHHHHHHhCCceeeec
Confidence            688999999999999999 9999999      69999999999999999994    467899999999999886544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=98.21  E-value=1.9e-06  Score=85.45  Aligned_cols=62  Identities=23%  Similarity=0.229  Sum_probs=52.5

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .-|.||||+|+++|+. ++++|+++      |+|++++|.+|.||+|+|++    .++.-++-+|+..|++.+
T Consensus       110 ~l~stPLHWAar~G~~~vv~lLlqh------GAdpt~~D~~G~~~lHla~~----~~~~~~vayll~~~~d~d  172 (600)
T KOG0509|consen  110 VLGSTPLHWAARNGHISVVDLLLQH------GADPTLKDKQGLTPLHLAAQ----FGHTALVAYLLSKGADID  172 (600)
T ss_pred             CCCCCcchHHHHcCcHHHHHHHHHc------CCCCceecCCCCcHHHHHHH----hCchHHHHHHHHhcccCC
Confidence            6688999999999999 99999985      99999999999999999965    667778888888886544

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.21  E-value=2.6e-06  Score=84.01  Aligned_cols=68  Identities=18%  Similarity=0.201  Sum_probs=56.1

Q ss_pred             cccCCCChHHHHHHHh---CcH-HHHHHhhCccccccCccc-cccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWI---HLQ-VIELLLGHQANASQGLEV-NAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~---~~~-iv~~LL~~~~~~~~~v~v-n~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|.||||.|+..   ++. ++++|++      .|+++ +.+|..|+||||+|...  ..++.+++++|+++|++..
T Consensus       103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~------~Gadin~~~d~~g~tpLh~a~~~--~~~~~~iv~~Ll~~Gadi~  174 (494)
T PHA02989        103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLS------KGINVNDVKNSRGYNLLHMYLES--FSVKKDVIKILLSFGVNLF  174 (494)
T ss_pred             CCCCCCCcHHHHHHHhcccCcHHHHHHHHH------CCCCcccccCCCCCCHHHHHHHh--ccCCHHHHHHHHHcCCCcc
Confidence            4788999999998765   467 9999998      49999 89999999999998642  2457789999999998765


Q ss_pred             C
Q 023199           95 R   95 (286)
Q Consensus        95 ~   95 (286)
                      .
T Consensus       175 ~  175 (494)
T PHA02989        175 E  175 (494)
T ss_pred             c
Confidence            4

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.19  E-value=3.1e-06  Score=82.52  Aligned_cols=62  Identities=24%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             ccCCCChHHHHHH--HhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCC--cHHHHHHHHHcCCC
Q 023199           21 YDLSSDYKEQLKT--WIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAG--DREIEEILRSAGAT   92 (286)
Q Consensus        21 kD~~GnTpLHlAa--~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~--~~ei~~~L~~~Ga~   92 (286)
                      +|.+|+||||+|+  ..++. ++++|++      .|++++..|..|.||||.|..    .+  +.+++++|++.|++
T Consensus       102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~~iv~~Ll~~g~d  168 (480)
T PHA03100        102 PDNNGITPLLYAISKKSNSYSIVEYLLD------NGANVNIKNSDGENLLHLYLE----SNKIDLKILKLLIDKGVD  168 (480)
T ss_pred             CCCCCCchhhHHHhcccChHHHHHHHHH------cCCCCCccCCCCCcHHHHHHH----cCCChHHHHHHHHHCCCC
Confidence            4455555555555  44455 5555554      245555555555555555533    22  34445555555444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.17  E-value=1.6e-06  Score=85.11  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      -|.+|.|+||+||..|+. ..++|+.+      ++|+.++|..|+|||.+|.    ..+..|+.++|+.+|.....-
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLiWy------g~dv~~rda~g~t~l~yar----~a~sqec~d~llq~gcp~e~~  723 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLIWY------GVDVMARDAHGRTALFYAR----QAGSQECIDVLLQYGCPDECG  723 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHHHh------CccceecccCCchhhhhHh----hcccHHHHHHHHHcCCCcccc
Confidence            578899999999999999 88888884      9999999999999999994    477889999999999865543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.17  E-value=1.1e-06  Score=77.36  Aligned_cols=84  Identities=18%  Similarity=0.099  Sum_probs=56.0

Q ss_pred             eeccCCCCcccccccCCCChHHHHHHHhCcH-HHHHHhhCccc---------------------------cccCcccccc
Q 023199            8 DITARKENTCQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQAN---------------------------ASQGLEVNAI   59 (286)
Q Consensus         8 ~~~~~~~~~~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~---------------------------~~~~v~vn~~   59 (286)
                      ++..+..|..--..|+.|-|||.+|+.+|+. +|++|+..++.                           =..++|+|..
T Consensus       143 ~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvy  222 (296)
T KOG0502|consen  143 DVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVY  222 (296)
T ss_pred             HHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCccee
Confidence            3444434444335899999999999999999 99999986332                           0245666666


Q ss_pred             CCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           60 NHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        60 N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      |-+|-|||-+|++    .++.++++.|+..||....
T Consensus       223 DwNGgTpLlyAvr----gnhvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  223 DWNGGTPLLYAVR----GNHVKCVESLLNSGADVTQ  254 (296)
T ss_pred             ccCCCceeeeeec----CChHHHHHHHHhcCCCccc
Confidence            6666666666643    4556666666666665543

>PHA02730 ankyrin-like protein; Provisional

Probab=98.16  E-value=3.5e-06  Score=85.75  Aligned_cols=66  Identities=17%  Similarity=0.012  Sum_probs=57.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      ++|..|+||||+|+..++. ++++|+++      |+++|.+|+ .|.||+|.|..  ...++.+++++|+++|+..
T Consensus       457 akD~~G~TPLh~Aa~~~~~eive~LI~~------GAdIN~~d~~~g~TaL~~Aa~--~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        457 MIDNENKTLLYYAVDVNNIQFARRLLEY------GASVNTTSRSIINTAIQKSSY--RRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHC------CCCCCCCCCcCCcCHHHHHHH--hhcCcHHHHHHHHHcCCCH
Confidence            6899999999999999999 99999984      999999997 59999999964  1235789999999999754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=3.3e-06  Score=85.83  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCC------------------------
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISP------------------------   74 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~------------------------   74 (286)
                      .+|+||+||||+|++.|++ .++.|++      .|+++|.+|+++.||||.|+...                        
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~------~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPESVDNLLG------FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             cccccCCchHHHHHHcCChhHHHHHHH------cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence            5688999999999999999 9999988      48888888888888888887531                        


Q ss_pred             -------CCCCcHHHHHHHHHcCCCCCC
Q 023199           75 -------SEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        75 -------~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                             ...++.++++.|+..||.-.+
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~  369 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKGALFLN  369 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcChhhhc
Confidence                   012456788888888876553

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.15  E-value=1.5e-06  Score=81.36  Aligned_cols=57  Identities=25%  Similarity=0.257  Sum_probs=40.0

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      .-|+|+|.||+.+|+. +|+.||.      .|+|+|++|.+|-|||..|.    +.++.||+++|+..
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLa------cgAdVNiQDdDGSTALMCA~----EHGhkEivklLLA~  395 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLA------CGADVNIQDDDGSTALMCAA----EHGHKEIVKLLLAV  395 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHH------ccCCCccccCCccHHHhhhh----hhChHHHHHHHhcc
Confidence            3477777777777777 7777776      37777777777777777773    35677777777655

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.13  E-value=6e-06  Score=70.12  Aligned_cols=66  Identities=29%  Similarity=0.292  Sum_probs=57.2

Q ss_pred             cccCCCChHHHHHHHhCc-----H-HHHHHhhCccccccCc---cccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           20 SYDLSSDYKEQLKTWIHL-----Q-VIELLLGHQANASQGL---EVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~-----~-iv~~LL~~~~~~~~~v---~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      .+|.+|.||||+|+..++     . ++++|++.      +.   ..+..|.+|.||||+|..    .++.++++.|+..|
T Consensus       101 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~------g~~~~~~~~~~~~g~tpl~~A~~----~~~~~~~~~ll~~~  170 (235)
T COG0666         101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA------GADLDVNNLRDEDGNTPLHWAAL----NGDADIVELLLEAG  170 (235)
T ss_pred             cccCCCCcHHHHHHhcCCcccchHHHHHHHHHc------CCCCCCccccCCCCCchhHHHHH----cCchHHHHHHHhcC
Confidence            689999999999999999     8 99999995      66   667779999999999965    45669999999998


Q ss_pred             CCCCC
Q 023199           91 ATGMR   95 (286)
Q Consensus        91 a~~~~   95 (286)
                      +....
T Consensus       171 ~~~~~  175 (235)
T COG0666         171 ADPNS  175 (235)
T ss_pred             CCCcc
Confidence            76554

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.12  E-value=6.6e-06  Score=76.56  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             cccCCCChH-HHHHHHhCcH-HHHHHhhCccccccCccccccC----CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYDLSSDYK-EQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN----HSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD~~GnTp-LHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N----~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      .+|++|+|+ ||.|++.++. ++++|+++      |+++|.++    +.|.||||+|+.    .++.++.++|+++||+.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~------GAdiN~~~~~sd~~g~TpLh~Aa~----~~~~eivklLL~~GADV   96 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKL------GADPEAPFPLSENSKTNPLIYAID----CDNDDAAKLLIRYGADV   96 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHC------CCCccccCcccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCc
Confidence            578887765 5666666788 99999994      99999974    689999999964    66889999999999987


Q ss_pred             CC
Q 023199           94 MR   95 (286)
Q Consensus        94 ~~   95 (286)
                      ..
T Consensus        97 N~   98 (300)
T PHA02884         97 NR   98 (300)
T ss_pred             Cc
Confidence            74

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.11  E-value=4.6e-06  Score=76.19  Aligned_cols=71  Identities=25%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             CCCCcccccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           12 RKENTCQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        12 ~~~~~~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      ..|+++++ -|+.|-+|||+||+.|+. +++.|++      .|+.+|..|....||||+|+.    .++.+|+..|++..
T Consensus        22 ~tehdln~-gddhgfsplhwaakegh~aivemll~------rgarvn~tnmgddtplhlaaa----hghrdivqkll~~k   90 (448)
T KOG0195|consen   22 DTEHDLNV-GDDHGFSPLHWAAKEGHVAIVEMLLS------RGARVNSTNMGDDTPLHLAAA----HGHRDIVQKLLSRK   90 (448)
T ss_pred             Cccccccc-ccccCcchhhhhhhcccHHHHHHHHh------cccccccccCCCCcchhhhhh----cccHHHHHHHHHHh
Confidence            34455554 789999999999999999 9999998      599999999999999999964    67899999998766


Q ss_pred             CCC
Q 023199           91 ATG   93 (286)
Q Consensus        91 a~~   93 (286)
                      ++.
T Consensus        91 adv   93 (448)
T KOG0195|consen   91 ADV   93 (448)
T ss_pred             ccc
Confidence            654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.11  E-value=2.7e-06  Score=79.70  Aligned_cols=61  Identities=25%  Similarity=0.286  Sum_probs=54.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      .+|.||.|+|.+|+++|+. ++++||..     +.+|..+.|.+|-|||.+|.    +.++.||.-+|-.+
T Consensus       368 iQDdDGSTALMCA~EHGhkEivklLLA~-----p~cd~sLtD~DgSTAl~IAl----eagh~eIa~mlYa~  429 (452)
T KOG0514|consen  368 IQDDDGSTALMCAAEHGHKEIVKLLLAV-----PSCDISLTDVDGSTALSIAL----EAGHREIAVMLYAH  429 (452)
T ss_pred             cccCCccHHHhhhhhhChHHHHHHHhcc-----CcccceeecCCCchhhhhHH----hcCchHHHHHHHHH
Confidence            5899999999999999999 99999998     89999999999999999995    47788988777643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.10  E-value=6.5e-06  Score=85.09  Aligned_cols=66  Identities=15%  Similarity=0.018  Sum_probs=52.6

Q ss_pred             cCCCChHHHHHHHh--CcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           22 DLSSDYKEQLKTWI--HLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        22 D~~GnTpLHlAa~~--~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      |..|+||||.|+..  ++. ++++|++      .|+++|.+|.+|.||||+|+..  +..+.+++++|+++||+...
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe------~GADVN~kD~~G~TPLH~Aa~~--g~~~~eIVklLLe~GADVN~  242 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCN------NGVNVNLQNNHLITPLHTYLIT--GNVCASVIKKIIELGGDMDM  242 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHHc--CCCCHHHHHHHHHcCCCCCC
Confidence            78899999988643  466 9999998      4899999999999999999752  12245899999999988653

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.03  E-value=9.8e-06  Score=83.01  Aligned_cols=62  Identities=13%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA   91 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga   91 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|..+.+|.||||.|..    .++.++++.|...+.
T Consensus       173 ~~d~~G~TpLh~Aa~~G~~~iv~~LL~------~Gad~n~~~~~g~t~L~~A~~----~~~~~ivk~Ll~~~~  235 (682)
T PHA02876        173 AKDIYCITPIHYAAERGNAKMVNLLLS------YGADVNIIALDDLSVLECAVD----SKNIDTIKAIIDNRS  235 (682)
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHH------CCCCcCccCCCCCCHHHHHHH----cCCHHHHHHHHhcCC
Confidence            4788999999999999999 9999999      499999999999999999965    345566666655443

>PHA02917 ankyrin-like protein; Provisional

Probab=98.01  E-value=1.1e-05  Score=82.71  Aligned_cols=66  Identities=21%  Similarity=0.216  Sum_probs=57.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ++|..|+||||+|+..++. ++++|++      .|+++|.+|..|.||||+|..   ..++.+++++|+.+|+...
T Consensus       447 ~kd~~G~TpLh~Aa~~~~~~~v~~Ll~------~GAdin~~d~~G~T~L~~A~~---~~~~~~iv~~LL~~ga~i~  513 (661)
T PHA02917        447 MIDKRGETLLHKAVRYNKQSLVSLLLE------SGSDVNIRSNNGYTCIAIAIN---ESRNIELLKMLLCHKPTLD  513 (661)
T ss_pred             CCCCCCcCHHHHHHHcCCHHHHHHHHH------CcCCCCCCCCCCCCHHHHHHH---hCCCHHHHHHHHHcCCChh
Confidence            5899999999999999999 9999998      499999999999999999963   1346799999999987554

>PHA02917 ankyrin-like protein; Provisional

Probab=98.01  E-value=9.2e-06  Score=83.23  Aligned_cols=47  Identities=15%  Similarity=0.087  Sum_probs=42.1

Q ss_pred             cccCCCChHHHHHHHh---CcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199           20 SYDLSSDYKEQLKTWI---HLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI   72 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~---~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~   72 (286)
                      ++|.+|+||||+|++.   |+. ++++|++      .|++++.+|.+|+||||.|..
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~------~ga~v~~~~~~g~TpL~~Aa~   77 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLD------SGTNPLHKNWRQLTPLEEYTN   77 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHH------CCCCccccCCCCCCHHHHHHH
Confidence            5799999999998665   678 9999998      499999999999999998875

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.00  E-value=2e-05  Score=60.85  Aligned_cols=61  Identities=31%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA   91 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga   91 (286)
                      +|.+|.||||.|+..++. ++++|+++      +.+.+..+..|.||++.|..    .++.++.+.|+..|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~------~~~~~~~~~~g~~~l~~a~~----~~~~~~~~~ll~~~~   64 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLEN------GADVNAKDNDGRTPLHLAAK----NGHLEIVKLLLEKGA   64 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHc------CCCCCccCCCCCcHHHHHHH----cCCHHHHHHHHHcCC
Confidence            578899999999999999 99999985      66678899999999999975    445689999999886

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.99  E-value=6.8e-06  Score=79.51  Aligned_cols=53  Identities=23%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             cCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHH
Q 023199           22 DLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEE   84 (286)
Q Consensus        22 D~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~   84 (286)
                      -..|+||||+|++.|+. .+++|+-+      |+|+++.|.+|.||+++|..    .++.++.+
T Consensus       164 pekg~TpLHvAAk~Gq~~Q~ElL~vY------GAD~~a~d~~GmtP~~~AR~----~gH~~lae  217 (669)
T KOG0818|consen  164 PEKGNTPLHVAAKAGQILQAELLAVY------GADPGAQDSSGMTPVDYARQ----GGHHELAE  217 (669)
T ss_pred             cccCCchhHHHHhccchhhhhHHhhc------cCCCCCCCCCCCcHHHHHHh----cCchHHHH
Confidence            36799999999999999 99999985      99999999999999999954    55544443

>PHA02876 ankyrin repeat protein; Provisional

Probab=97.99  E-value=1.3e-05  Score=82.24  Aligned_cols=65  Identities=18%  Similarity=0.075  Sum_probs=38.5

Q ss_pred             cccCCCChHHHHHHHhC-cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIH-LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~-~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|..|+||||+|+..+ +. ++++|++      .|+++|.+|..|.||||+|+.    .++.++++.|+..|++..
T Consensus       336 ~~d~~g~TpLh~A~~~~~~~~iv~lLl~------~gadin~~d~~G~TpLh~Aa~----~~~~~iv~~Ll~~gad~~  402 (682)
T PHA02876        336 AADRLYITPLHQASTLDRNKDIVITLLE------LGANVNARDYCDKTPIHYAAV----RNNVVIINTLLDYGADIE  402 (682)
T ss_pred             CcccCCCcHHHHHHHhCCcHHHHHHHHH------cCCCCccCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCcc
Confidence            35666666666666544 33 5555555      366666666666666666643    345566666666665543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=97.98  E-value=5.5e-06  Score=87.95  Aligned_cols=64  Identities=25%  Similarity=0.257  Sum_probs=58.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      .+|+.|.||||.||..|+. ++++|+++      |+++|+.|.+|.|||++|..    .+..++.+.|...|+..
T Consensus       568 ak~~~G~TPLH~Aa~~G~~~i~~LLlk~------GA~vna~d~~g~TpL~iA~~----lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  568 AKDKLGYTPLHQAAQQGHNDIAELLLKH------GASVNAADLDGFTPLHIAVR----LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             ccCCCCCChhhHHHHcChHHHHHHHHHc------CCCCCcccccCcchhHHHHH----hcccchhhHHHhccCcc
Confidence            6899999999999999999 99999995      99999999999999999975    56778889999888874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.90  E-value=4.9e-06  Score=80.12  Aligned_cols=62  Identities=16%  Similarity=0.149  Sum_probs=57.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      ++|.|.+|+||+||..|+. ++++|++.     .+++.+.+|+.|+||||-|.+    .++.++.++|.++-
T Consensus       534 ~~DyD~RTaLHvAAaEG~v~v~kfl~~~-----~kv~~~~kDRw~rtPlDdA~~----F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  534 TKDYDDRTALHVAAAEGHVEVVKFLLNA-----CKVDPDPKDRWGRTPLDDAKH----FKHKEVVKLLEEAQ  596 (622)
T ss_pred             ccccccchhheeecccCceeHHHHHHHH-----HcCCCChhhccCCCcchHhHh----cCcHHHHHHHHHHh
Confidence            7899999999999999999 99999996     799999999999999999954    78899999998764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=97.90  E-value=1.2e-05  Score=68.56  Aligned_cols=61  Identities=21%  Similarity=0.096  Sum_probs=51.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      ++.++|+||||-||+-++. ++-+||.+      |+|+|+..+..+||||+++..   .+.+...++|+..
T Consensus       125 a~T~~GWTPLhSAckWnN~~va~~LLqh------gaDVnA~t~g~ltpLhlaa~~---rn~r~t~~~Ll~d  186 (228)
T KOG0512|consen  125 AKTNEGWTPLHSACKWNNFEVAGRLLQH------GADVNAQTKGLLTPLHLAAGN---RNSRDTLELLLHD  186 (228)
T ss_pred             cccccCccchhhhhcccchhHHHHHHhc------cCcccccccccchhhHHhhcc---cchHHHHHHHhhc
Confidence            5789999999999999999 99999984      999999999999999999752   3445666666653

>PHA02792 ankyrin-like protein; Provisional

Probab=97.89  E-value=1.8e-05  Score=80.04  Aligned_cols=68  Identities=21%  Similarity=0.120  Sum_probs=55.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhC--CCC----CCcHHHHHHHHHcCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLIS--PSE----AGDREIEEILRSAGAT   92 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~--~~~----~~~~ei~~~L~~~Ga~   92 (286)
                      .+|.+|+||||.|+..++. ++++|+++      |+++|.+|+.|.|||++|...  ...    ....++.++|++.|..
T Consensus       405 ~kD~~G~TPLh~Aa~~~n~eivelLLs~------GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        405 KIDKHGRSILYYCIESHSVSLVEWLIDN------GADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             cccccCcchHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            5899999999999999999 99999994      999999999999999999641  111    1124678888888754


Q ss_pred             C
Q 023199           93 G   93 (286)
Q Consensus        93 ~   93 (286)
                      .
T Consensus       479 i  479 (631)
T PHA02792        479 I  479 (631)
T ss_pred             h
Confidence            3

>PHA02795 ankyrin-like protein; Provisional

Probab=97.86  E-value=2.4e-05  Score=76.13  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=55.3

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ..|.|++|.|+..++. ++++|+++      |+++|.+|.+|.||||+|+.    .++.+++++|++.|++...
T Consensus       186 ~~~~t~l~~a~~~~~~eIve~LIs~------GADIN~kD~~G~TpLh~Aa~----~g~~eiVelLL~~GAdIN~  249 (437)
T PHA02795        186 IIQYTRGFLVDEPTVLEIYKLCIPY------IEDINQLDAGGRTLLYRAIY----AGYIDLVSWLLENGANVNA  249 (437)
T ss_pred             hhccchhHHHHhcCHHHHHHHHHhC------cCCcCcCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            4578899999988888 99999984      89999999999999999975    6788999999999987654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=97.86  E-value=6.1e-05  Score=58.04  Aligned_cols=63  Identities=25%  Similarity=0.325  Sum_probs=55.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      .+|..|.||||.|+..++. ++++|+++      +.+++..|..|.||+|.|..    .++.++.++|...|..
T Consensus        35 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~------~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~L~~~~~~   98 (126)
T cd00204          35 AKDNDGRTPLHLAAKNGHLEIVKLLLEK------GADVNARDKDGNTPLHLAAR----NGNLDVVKLLLKHGAD   98 (126)
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHHH----cCcHHHHHHHHHcCCC
Confidence            5789999999999999999 99999985      77889999999999999975    4568999999998733

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.81  E-value=2.1e-05  Score=76.80  Aligned_cols=66  Identities=20%  Similarity=0.183  Sum_probs=59.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ..+.||+|+||-++...+. +|++|+++      +.++|..|++|+||||.|.    ..++..|+++|+.+||....
T Consensus        68 ~~n~DglTalhq~~id~~~e~v~~l~e~------ga~Vn~~d~e~wtPlhaaa----scg~~~i~~~li~~gA~~~a  134 (527)
T KOG0505|consen   68 LCNVDGLTALHQACIDDNLEMVKFLVEN------GANVNAQDNEGWTPLHAAA----SCGYLNIVEYLIQHGANLLA  134 (527)
T ss_pred             ccCCccchhHHHHHhcccHHHHHHHHHh------cCCccccccccCCcchhhc----ccccHHHHHHHHHhhhhhhh
Confidence            4578999999999999999 99999994      9999999999999999994    46788999999999987653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.81  E-value=3.1e-05  Score=75.61  Aligned_cols=47  Identities=17%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI   72 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~   72 (286)
                      .+|..|+||||+|+..|+. .++.|+.      .++++..+|++|++|||-|+.
T Consensus        50 ~~D~~g~TpLhlAV~Lg~~~~a~~Ll~------a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   50 RRDPPGRTPLHLAVRLGHVEAARILLS------AGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccCCCCccHHHHHHhcCHHHHHHHHh------cCCCccccccccccHHHHHHH
Confidence            5789999999999999999 9999998      599999999999999999975

>PHA02792 ankyrin-like protein; Provisional

Probab=97.75  E-value=4.4e-05  Score=77.20  Aligned_cols=62  Identities=18%  Similarity=0.020  Sum_probs=53.5

Q ss_pred             cccCCCChHHHHHHHhC-------cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIH-------LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~-------~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      .+|..|+||||+|+..+       +. ++++|+++      |++++.+|+.|.||||+|+...  ..+.||+++|...
T Consensus       170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~------g~~~~~~d~~g~t~l~~~~~~~--~i~~ei~~~L~~~  239 (631)
T PHA02792        170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH------EKEMRYYTYREHTTLYYYVDKC--DIKREIFDALFDS  239 (631)
T ss_pred             cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC------CCCcCccCCCCChHHHHHHHcc--cchHHHHHHHHhc
Confidence            57888999999999998       78 99999995      9999999999999999998632  2367899988864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=97.72  E-value=4.8e-05  Score=78.81  Aligned_cols=63  Identities=19%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             cCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC--------------CCCCCHHHHHhhCCCCCCcHHHHHHH
Q 023199           22 DLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN--------------HSGVTAFDLLLISPSEAGDREIEEIL   86 (286)
Q Consensus        22 D~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N--------------~~G~TaLdiA~~~~~~~~~~ei~~~L   86 (286)
                      +..|.||||+|+.+++. ++++|+++      |+++|.++              ..|.||||+|..    .++.+++++|
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~------GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~----~~~~~iv~lL  194 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLER------GASVPARACGDFFVKSQGVDSFYHGESPLNAAAC----LGSPSIVALL  194 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhC------CCCCCcCcCCchhhcCCCCCcccccccHHHHHHH----hCCHHHHHHH
Confidence            35799999999999999 99999984      88888653              369999999964    5688999999


Q ss_pred             HHcCCCCC
Q 023199           87 RSAGATGM   94 (286)
Q Consensus        87 ~~~Ga~~~   94 (286)
                      ++.|++..
T Consensus       195 l~~gadin  202 (743)
T TIGR00870       195 SEDPADIL  202 (743)
T ss_pred             hcCCcchh
Confidence            99997653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=97.71  E-value=1.8e-05  Score=80.03  Aligned_cols=66  Identities=21%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|.+|||+|++.|+. +++.|+.+      +..+|+.+.+|.||||+++.    .++.+.+.+|+++|+++..
T Consensus        77 l~d~kg~~plhlaaw~g~~e~vkmll~q------~d~~na~~~e~~tplhlaaq----hgh~dvv~~Ll~~~adp~i  143 (854)
T KOG0507|consen   77 LCDTKGILPLHLAAWNGNLEIVKMLLLQ------TDILNAVNIENETPLHLAAQ----HGHLEVVFYLLKKNADPFI  143 (854)
T ss_pred             hhhccCcceEEehhhcCcchHHHHHHhc------ccCCCcccccCcCccchhhh----hcchHHHHHHHhcCCCccc
Confidence            5788999999999999999 99998884      67789999999999999964    6788999999999988775

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=97.69  E-value=0.00011  Score=54.86  Aligned_cols=53  Identities=25%  Similarity=0.297  Sum_probs=45.5

Q ss_pred             HHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           29 EQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        29 LHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ||+|+..++. ++++|++.      +.+++.    |.||||+|..    .++.+++++|++.|++...
T Consensus         1 L~~A~~~~~~~~~~~ll~~------~~~~~~----~~~~l~~A~~----~~~~~~~~~Ll~~g~~~~~   54 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK------GADINL----GNTALHYAAE----NGNLEIVKLLLENGADINS   54 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT------TSTTTS----SSBHHHHHHH----TTTHHHHHHHHHTTTCTT-
T ss_pred             CHHHHHcCCHHHHHHHHHC------cCCCCC----CCCHHHHHHH----cCCHHHHHHHHHhcccccc
Confidence            8999999999 99999984      666666    9999999975    6788999999999987654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=97.67  E-value=7e-05  Score=63.50  Aligned_cols=63  Identities=27%  Similarity=0.297  Sum_probs=55.5

Q ss_pred             cccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           18 QVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        18 ~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      ...+|.+|+||||+|+..++. ++++|++      .+.+++..|..|.|+++.+.    ..++.++...+...+
T Consensus       140 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~------~~~~~~~~~~~g~t~l~~a~----~~~~~~~~~~l~~~~  203 (235)
T COG0666         140 NNLRDEDGNTPLHWAALNGDADIVELLLE------AGADPNSRNSYGVTALDPAA----KNGRIELVKLLLDKG  203 (235)
T ss_pred             ccccCCCCCchhHHHHHcCchHHHHHHHh------cCCCCcccccCCCcchhhhc----ccchHHHHHHHHhcC
Confidence            345799999999999999999 9999998      58999999999999999994    466778888888876

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.64  E-value=5.6e-05  Score=73.82  Aligned_cols=66  Identities=21%  Similarity=0.151  Sum_probs=57.6

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      .+..|-|.||+|+.+|.. ..++|+.      .+.+++++|.+|+||||-|+.    ++..+..++|..+|+.....
T Consensus       194 ~~~rG~T~lHvAaa~Gy~e~~~lLl~------ag~~~~~~D~dgWtPlHAAA~----Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  194 RHARGATALHVAAANGYTEVAALLLQ------AGYSVNIKDYDGWTPLHAAAH----WGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             cccccchHHHHHHhhhHHHHHHHHHH------hccCcccccccCCCcccHHHH----hhhHhHHHHHHHhhcccchh
Confidence            444599999999999999 9999998      499999999999999999954    88889999999999886543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.53  E-value=4.3e-05  Score=77.99  Aligned_cols=63  Identities=22%  Similarity=0.274  Sum_probs=57.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      .+|..|+|+||+|+..+.. ++++|+.+      |++++.+|. .|.||||-|..    +|+.++...|+++|+.
T Consensus        47 ikD~~GR~alH~~~S~~k~~~l~wLlqh------Gidv~vqD~ESG~taLHRaiy----yG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   47 IKDRYGRTALHIAVSENKNSFLRWLLQH------GIDVFVQDEESGYTALHRAIY----YGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHhhccceeeeeeccchhHHHHHHHhc------CceeeeccccccchHhhHhhh----hchHHHHHHHHhcCCc
Confidence            7899999999999999988 99999995      999999995 69999999965    8899999999999954

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=97.39  E-value=0.00014  Score=50.51  Aligned_cols=39  Identities=26%  Similarity=0.271  Sum_probs=24.6

Q ss_pred             CccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           53 GLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        53 ~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ..++|..|..|+||||+|+.    .++.+++++|+..|++...
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~----~g~~~~v~~Ll~~g~d~~~   44 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAAR----YGHSEVVRLLLQNGADPNA   44 (56)
T ss_dssp             T--TT---TTS--HHHHHHH----HT-HHHHHHHHHCT--TT-
T ss_pred             cCCCcCcCCCCCcHHHHHHH----cCcHHHHHHHHHCcCCCCC
Confidence            48999999999999999976    6788999999998886654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.34  E-value=0.00041  Score=63.62  Aligned_cols=66  Identities=23%  Similarity=0.220  Sum_probs=57.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +.|..|.|+|-.|+..|+. .+++|++.      |+|+|... ..+.|||+.|+.    .|+.++-++|+.+|++...
T Consensus        40 ~~D~sGMs~LahAaykGnl~~v~lll~~------gaDvN~~qhg~~YTpLmFAAL----SGn~dvcrllldaGa~~~~  107 (396)
T KOG1710|consen   40 QRDPSGMSVLAHAAYKGNLTLVELLLEL------GADVNDKQHGTLYTPLMFAAL----SGNQDVCRLLLDAGARMYL  107 (396)
T ss_pred             ccCCCcccHHHHHHhcCcHHHHHHHHHh------CCCcCcccccccccHHHHHHH----cCCchHHHHHHhccCcccc
Confidence            6799999999999999999 99999994      99998764 679999999976    5677899999999997653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.24  E-value=0.00025  Score=68.79  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=55.8

Q ss_pred             CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      ..|||.-||..|+. ++++|+++      ++|+++.|+.|.|.|+||.    ..++.+|.++|++.||+....
T Consensus       117 NStPLraACfDG~leivKyLvE~------gad~~IanrhGhTcLmIa~----ykGh~~I~qyLle~gADvn~k  179 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEH------GADPEIANRHGHTCLMIAC----YKGHVDIAQYLLEQGADVNAK  179 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHc------CCCCcccccCCCeeEEeee----ccCchHHHHHHHHhCCCcchh
Confidence            45999999999999 99999984      9999999999999999994    478999999999999987653

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.16  E-value=0.0008  Score=69.16  Aligned_cols=59  Identities=17%  Similarity=0.110  Sum_probs=52.5

Q ss_pred             hHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           27 YKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        27 TpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +.||.|+..|+. .+++|++      .|+++|.+|.+|.||||+|+.    .++.+++++|+..|++...
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~------~Gadin~~d~~G~TpLh~Aa~----~g~~eiv~~LL~~Gadvn~  143 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT------GGADPNCRDYDGRTPLHIACA----NGHVQVVRVLLEFGADPTL  143 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCcHHHHHHH----CCCHHHHHHHHHCCCCCCC
Confidence            458899999999 9999998      489999999999999999965    6789999999999987653

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=97.12  E-value=0.00042  Score=47.38  Aligned_cols=25  Identities=12%  Similarity=0.040  Sum_probs=18.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHh
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLL   44 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL   44 (286)
                      .+|.+|+||||+|++.|+. ++++|+
T Consensus        29 ~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen   29 AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             -B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            3599999999999999999 999986

...

>PF13606 Ank_3: Ankyrin repeat

Probab=97.01  E-value=0.001  Score=40.39  Aligned_cols=29  Identities=31%  Similarity=0.315  Sum_probs=24.9

Q ss_pred             CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           62 SGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        62 ~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|+||||+|..    .++.+++++|+++|++..
T Consensus         1 ~G~T~Lh~A~~----~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAAS----NGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHH----hCCHHHHHHHHHcCCCCC
Confidence            59999999976    578999999999998653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=96.91  E-value=0.00051  Score=71.27  Aligned_cols=65  Identities=11%  Similarity=0.045  Sum_probs=50.3

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCC-----CcHHHHHHHHHcCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEA-----GDREIEEILRSAGATG   93 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~-----~~~ei~~~L~~~Ga~~   93 (286)
                      ..|.||||+|+..++. ++++|+++      ++|+|.+|+.|+||||+|+......     ....+.+.+...+++.
T Consensus       173 ~~g~tpL~~Aa~~~~~~iv~lLl~~------gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       173 YHGESPLNAAACLGSPSIVALLSED------PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             cccccHHHHHHHhCCHHHHHHHhcC------CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            4699999999999999 99999985      8899999999999999997632110     0224566676666553

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=96.89  E-value=0.0015  Score=50.63  Aligned_cols=45  Identities=16%  Similarity=0.164  Sum_probs=41.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLL   70 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA   70 (286)
                      .+|+.|-|||.-|++.|+. +|++|++      .|++...+--+|.+.++-+
T Consensus        62 ~kDKygITPLLsAvwEGH~~cVklLL~------~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   62 DKDKYGITPLLSAVWEGHRDCVKLLLQ------NGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             CccccCCcHHHHHHHHhhHHHHHHHHH------cCcccceeCCCchhHHhhc
Confidence            4999999999999999999 9999999      5999999999999988876

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.88  E-value=0.0011  Score=67.86  Aligned_cols=59  Identities=24%  Similarity=0.375  Sum_probs=47.6

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      .|..||-+||-.+++ ++++|+.      .++|+|++|..|+|.||+.+..    ...++.++++++|++
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~------~gAd~~aqDS~GNTVLH~lVi~----~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLA------HGADPNAQDSNGNTVLHMLVIH----FVTEMYDLALELGAN  298 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHh------cCCCCCccccCCChHHHHHHHH----HHHHHHHHHHhcCCC
Confidence            467788888888888 8888888      4888888888888888888652    345788888888887

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.87  E-value=0.0015  Score=66.95  Aligned_cols=60  Identities=17%  Similarity=0.213  Sum_probs=49.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCcc--ccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLE--VNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~--vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      ++|..|||.||.-+.+-.. +.++++++      +.+  ..++|++|.|||-+|++    .+..++.+.+++.
T Consensus       268 aqDS~GNTVLH~lVi~~~~~My~~~L~~------ga~~l~~v~N~qgLTPLtLAak----lGk~emf~~ile~  330 (782)
T KOG3676|consen  268 AQDSNGNTVLHMLVIHFVTEMYDLALEL------GANALEHVRNNQGLTPLTLAAK----LGKKEMFQHILER  330 (782)
T ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHhc------CCCccccccccCCCChHHHHHH----hhhHHHHHHHHHh
Confidence            5999999999999998766 89999985      666  88999999999999965    5677766655543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=96.79  E-value=0.0017  Score=39.83  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=25.9

Q ss_pred             CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           62 SGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        62 ~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +|+||||+|+.    .++.+++++|++.|++...
T Consensus         1 dG~TpLh~A~~----~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQ----RGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHH----TTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHH----HHHHHHHHHHHHCcCCCCC
Confidence            59999999976    6689999999999987653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=96.63  E-value=0.0016  Score=63.98  Aligned_cols=61  Identities=16%  Similarity=-0.014  Sum_probs=47.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRS   88 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~   88 (286)
                      +.|.+|+||||+||..++. +++.|+++      |+.+-+.. .++.||.+-+..  .+.+...+..+|-.
T Consensus       611 a~DSdGWTPLHCAASCNnv~~ckqLVe~------GaavfAsTlSDmeTa~eKCee--~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  611 AADSDGWTPLHCAASCNNVPMCKQLVES------GAAVFASTLSDMETAAEKCEE--MEEGYDQCSQYLYG  673 (752)
T ss_pred             CccCCCCchhhhhhhcCchHHHHHHHhc------cceEEeeecccccchhhhcch--hhhhHHHHHHHHHH
Confidence            6899999999999999999 99999995      66666655 789999998743  22344556666653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=96.62  E-value=0.002  Score=65.63  Aligned_cols=60  Identities=20%  Similarity=0.162  Sum_probs=52.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      ....+|.||||+||.+++. ++.+|+++      +.|.-+.|+.+.|++|+|.+    .+..+.+.+|++.
T Consensus       110 a~~~e~~tplhlaaqhgh~dvv~~Ll~~------~adp~i~nns~~t~ldlA~q----fgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  110 AVNIENETPLHLAAQHGHLEVVFYLLKK------NADPFIRNNSKETVLDLASR----FGRAEVVQMLLQK  170 (854)
T ss_pred             cccccCcCccchhhhhcchHHHHHHHhc------CCCccccCcccccHHHHHHH----hhhhHHHHHHhhh
Confidence            4567899999999999999 99999994      99999999999999999965    6667777777765

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.37  E-value=0.013  Score=51.01  Aligned_cols=62  Identities=16%  Similarity=0.037  Sum_probs=54.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      ..|..|+|+|..|+..|+. .+.+|+.+     ..+.+...|..|++++.+|.+    .+..+.+..|.+.-
T Consensus         7 ~rD~fgWTalmcaa~eg~~eavsyllgr-----g~a~vgv~d~ssldaaqlaek----~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    7 ARDAFGWTALMCAAMEGSNEAVSYLLGR-----GVAFVGVTDESSLDAAQLAEK----GGAQAFVHSLFEND   69 (223)
T ss_pred             chhhhcchHHHHHhhhcchhHHHHHhcc-----CcccccccccccchHHHHHHh----cChHHHHHHHHHHh
Confidence            4899999999999999999 99999996     238999999999999999964    67788888888763

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=96.23  E-value=0.0039  Score=55.38  Aligned_cols=47  Identities=23%  Similarity=0.250  Sum_probs=43.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI   72 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~   72 (286)
                      ..|-+|-|||-+|+.-++. +++.|+.      .|++++..+..|++++|+|+.
T Consensus       221 vyDwNGgTpLlyAvrgnhvkcve~Ll~------sGAd~t~e~dsGy~~mdlAVa  268 (296)
T KOG0502|consen  221 VYDWNGGTPLLYAVRGNHVKCVESLLN------SGADVTQEDDSGYWIMDLAVA  268 (296)
T ss_pred             eeccCCCceeeeeecCChHHHHHHHHh------cCCCcccccccCCcHHHHHHH
Confidence            4788999999999987777 9999998      599999999999999999976

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=95.83  E-value=0.0079  Score=62.79  Aligned_cols=63  Identities=24%  Similarity=0.231  Sum_probs=53.2

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ..|.|+||.|+..+.. +.++|+.      .+.++|.+|..|+||+|.+..    .++..+...|.+.||.+.-
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~------~ga~vn~~d~~g~~plh~~~~----~g~~~~~~~ll~~~a~~~a  717 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ------NGADVNALDSKGRTPLHHATA----SGHTSIACLLLKRGADPNA  717 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh------cCCcchhhhccCCCcchhhhh----hcccchhhhhccccccccc
Confidence            4579999999999999 9999998      499999999999999999965    4566777778887776654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=95.79  E-value=0.0044  Score=61.39  Aligned_cols=68  Identities=15%  Similarity=0.128  Sum_probs=56.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+-.|.||.|++.|+. +|+|++.+.    +.--+++.|..|.|+||-|+-    .++..+-.+|..+||.-.+
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~----p~elld~~de~get~lhkaa~----~~~r~vc~~lvdagasl~k  962 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHG----PSELLDMADETGETALHKAAC----QRNRAVCQLLVDAGASLRK  962 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcC----CHHHHHHHhhhhhHHHHHHHH----hcchHHHHHHHhcchhhee
Confidence            3688899999999999999 999999983    234578889999999999953    4566788999999986544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=95.61  E-value=0.011  Score=61.06  Aligned_cols=47  Identities=17%  Similarity=0.164  Sum_probs=42.6

Q ss_pred             ccc-CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199           20 SYD-LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI   72 (286)
Q Consensus        20 ~kD-~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~   72 (286)
                      .+| ..|.||||-|..+|+. ++-.||++      |+.+.++|++|+.||+...+
T Consensus        80 vqD~ESG~taLHRaiyyG~idca~lLL~~------g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   80 VQDEESGYTALHRAIYYGNIDCASLLLSK------GRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eccccccchHhhHhhhhchHHHHHHHHhc------CCceEEecccCCCHHHHHhh
Confidence            466 4599999999999999 99999985      89999999999999998876

>smart00248 ANK ankyrin repeats

Probab=95.59  E-value=0.017  Score=31.99  Aligned_cols=23  Identities=22%  Similarity=0.118  Sum_probs=21.0

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGH   46 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~   46 (286)
                      +|+||||+|+..++. +++.|+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc
Confidence            489999999999999 99999985

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=94.98  E-value=0.01  Score=62.41  Aligned_cols=66  Identities=14%  Similarity=0.077  Sum_probs=52.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +.|.+|.-.+|++|. ++. ..-+|+.-     .++.++.+|..|+||||+|..    .++.++...|...|+.++-
T Consensus       603 eld~d~qgV~hfca~-lg~ewA~ll~~~-----~~~ai~i~D~~G~tpL~wAa~----~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  603 ELDRDGQGVIHFCAA-LGYEWAFLPISA-----DGVAIDIRDRNGWTPLHWAAF----RGREKLVASLIELGADPGA  669 (975)
T ss_pred             hhcccCCChhhHhhh-cCCceeEEEEee-----cccccccccCCCCcccchHhh----cCHHHHHHHHHHhcccccc
Confidence            567788888888664 444 44455544     589999999999999999954    7888999999999988873

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=94.66  E-value=0.049  Score=50.29  Aligned_cols=50  Identities=20%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             ccccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199           17 CQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI   72 (286)
Q Consensus        17 ~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~   72 (286)
                      .+.-++.-+-||||.||-.|+. +.++|++      .|+.....|.-|+||-.+|+-
T Consensus        71 vN~~qhg~~YTpLmFAALSGn~dvcrllld------aGa~~~~vNsvgrTAaqmAAF  121 (396)
T KOG1710|consen   71 VNDKQHGTLYTPLMFAALSGNQDVCRLLLD------AGARMYLVNSVGRTAAQMAAF  121 (396)
T ss_pred             cCcccccccccHHHHHHHcCCchHHHHHHh------ccCccccccchhhhHHHHHHH
Confidence            3445678899999999999999 9999998      699999999999999999964

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=94.61  E-value=0.016  Score=61.70  Aligned_cols=65  Identities=28%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ++|..+.|+|-+||.-|.. ++++||..      +++...+|-...|||.+|.    ..+..+|+.+|+.+|+..+
T Consensus       819 Qsdrtkdt~lSlacsggr~~vvelLl~~------gankehrnvsDytPlsla~----Sggy~~iI~~llS~GseIn  884 (2131)
T KOG4369|consen  819 QSDRTKDTMLSLACSGGRTRVVELLLNA------GANKEHRNVSDYTPLSLAR----SGGYTKIIHALLSSGSEIN  884 (2131)
T ss_pred             hcccccCceEEEecCCCcchHHHHHHHh------hccccccchhhcCchhhhc----CcchHHHHHHHhhcccccc
Confidence            6677788888888877777 77888773      7777777888888888873    3556778888888886544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=94.15  E-value=0.023  Score=60.49  Aligned_cols=69  Identities=22%  Similarity=0.189  Sum_probs=55.1

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCcccccc-CCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC-CCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAI-NHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM-RDD   97 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~-N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~-~~l   97 (286)
                      .|+.|-+||.+|+-.|+. +|+.|+++      .+++++. |+.+.|+|-+|    +..+..+.+++|+.+|++.. +.+
T Consensus       786 rdkkgf~plImaatagh~tvV~~llk~------ha~veaQsdrtkdt~lSla----csggr~~vvelLl~~gankehrnv  855 (2131)
T KOG4369|consen  786 RDKKGFVPLIMAATAGHITVVQDLLKA------HADVEAQSDRTKDTMLSLA----CSGGRTRVVELLLNAGANKEHRNV  855 (2131)
T ss_pred             cccccchhhhhhcccCchHHHHHHHhh------hhhhhhhcccccCceEEEe----cCCCcchHHHHHHHhhccccccch
Confidence            789999999999988888 99999984      6777665 57889999998    44667899999999998753 334


Q ss_pred             CC
Q 023199           98 NQ   99 (286)
Q Consensus        98 ~~   99 (286)
                      .+
T Consensus       856 sD  857 (2131)
T KOG4369|consen  856 SD  857 (2131)
T ss_pred             hh
Confidence            33

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.10  E-value=0.061  Score=52.82  Aligned_cols=46  Identities=13%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHh
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLL   71 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~   71 (286)
                      ..|.--.|+||+|+..|.. ++.+||+.      ++|..++|..|.||.+++.
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Lee------g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEE------GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHh------cCCchhcccCCCCcccccc
Confidence            4556678999999999999 99999994      8999999999999999983

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.60  E-value=0.14  Score=48.92  Aligned_cols=61  Identities=20%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             ChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           26 DYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        26 nTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      +--|.-|++.|+. .+++|++      .|+++|..|+....||-+|..    .||...+++|++.||-..++
T Consensus        37 f~elceacR~GD~d~v~~LVe------tgvnVN~vD~fD~spL~lAsL----cGHe~vvklLLenGAiC~rd   98 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE------TGVNVNAVDRFDSSPLYLASL----CGHEDVVKLLLENGAICSRD   98 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH------hCCCcchhhcccccHHHHHHH----cCcHHHHHHHHHcCCccccc
Confidence            4567889999999 9999999      599999999999999999965    67889999999999876654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=93.51  E-value=0.14  Score=50.35  Aligned_cols=66  Identities=21%  Similarity=0.089  Sum_probs=52.0

Q ss_pred             ccCCCChH------HHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           21 YDLSSDYK------EQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        21 kD~~GnTp------LHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      +|+||-|.      ||-.++.++. +.--|+.      .|+++|.-+ ..|.||||+|++    .|+..-+++|.-.||+
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~------lGA~~N~~hpekg~TpLHvAAk----~Gq~~Q~ElL~vYGAD  192 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLS------LGAQANFFHPEKGNTPLHVAAK----AGQILQAELLAVYGAD  192 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHH------cccccCCCCcccCCchhHHHHh----ccchhhhhHHhhccCC
Confidence            56666554      8999999999 5545555      599999887 679999999965    6666778999999999


Q ss_pred             CCCC
Q 023199           93 GMRD   96 (286)
Q Consensus        93 ~~~~   96 (286)
                      ++..
T Consensus       193 ~~a~  196 (669)
T KOG0818|consen  193 PGAQ  196 (669)
T ss_pred             CCCC
Confidence            8754

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=92.91  E-value=0.11  Score=54.84  Aligned_cols=65  Identities=17%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRS   88 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~   88 (286)
                      -+|..|+||||+|+..|+. ++..|.+.++-.+.-.|....+-.|.|+-++|..    .++..+-.+|.+
T Consensus       636 i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s----~g~~gia~~lse  701 (975)
T KOG0520|consen  636 IRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA----NGHKGIAGYLSE  701 (975)
T ss_pred             cccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc----ccccchHHHHhh
Confidence            5899999999999999999 9999986533322223334444569999999964    344444444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=91.53  E-value=0.095  Score=54.94  Aligned_cols=60  Identities=23%  Similarity=0.265  Sum_probs=49.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      ++|..|+||||.+...|+. .+..|++      .+++.++.|.+|++|+++|...    .+.++.-++...
T Consensus       684 ~~d~~g~~plh~~~~~g~~~~~~~ll~------~~a~~~a~~~~~~~~l~~a~~~----~~~d~~~l~~l~  744 (785)
T KOG0521|consen  684 ALDSKGRTPLHHATASGHTSIACLLLK------RGADPNAFDPDGKLPLDIAMEA----ANADIVLLLRLA  744 (785)
T ss_pred             hhhccCCCcchhhhhhcccchhhhhcc------ccccccccCccCcchhhHHhhh----ccccHHHHHhhh
Confidence            6899999999999999999 8888888      5999999999999999999652    334444444433

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=91.25  E-value=0.17  Score=49.63  Aligned_cols=66  Identities=12%  Similarity=0.058  Sum_probs=52.9

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc-CCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA-GATGMRD   96 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~-Ga~~~~~   96 (286)
                      .+.++..++..|++.|+. ..+-+.-      .+.|++.+|.+.+|+||+|+    .+++.+++++|+.+ +.++.+.
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l------~g~D~~~~DyD~RTaLHvAA----aEG~v~v~kfl~~~~kv~~~~k  569 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFAL------QGMDLETKDYDDRTALHVAA----AEGHVEVVKFLLNACKVDPDPK  569 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHH------hcccccccccccchhheeec----ccCceeHHHHHHHHHcCCCChh
Confidence            567888899999999999 6655443      49999999999999999995    47888999998864 5544443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=90.87  E-value=0.3  Score=48.35  Aligned_cols=59  Identities=24%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             hHHHHHHHhCcH--HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           27 YKEQLKTWIHLQ--VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        27 TpLHlAa~~~~~--iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      -|||.++.....  ..+.|...     ....++.+|-.|+||||+|+.    .++.+..+.|+.+||...
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~-----~~~~id~~D~~g~TpLhlAV~----Lg~~~~a~~Ll~a~Adv~   82 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK-----VSLVIDRRDPPGRTPLHLAVR----LGHVEAARILLSAGADVS   82 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh-----hhceeccccCCCCccHHHHHH----hcCHHHHHHHHhcCCCcc
Confidence            459999988877  45545543     467889999999999999975    678899999999998654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=89.96  E-value=0.45  Score=47.71  Aligned_cols=59  Identities=20%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRS   88 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~   88 (286)
                      ..|..|.|+||-|+..++. +..+|++      .|+.+.-.|..|.||-.-|.+    .++.++..+|.+
T Consensus       929 ~~de~get~lhkaa~~~~r~vc~~lvd------agasl~ktd~kg~tp~eraqq----a~d~dlaayle~  988 (1004)
T KOG0782|consen  929 MADETGETALHKAACQRNRAVCQLLVD------AGASLRKTDSKGKTPQERAQQ----AGDPDLAAYLES  988 (1004)
T ss_pred             HHhhhhhHHHHHHHHhcchHHHHHHHh------cchhheecccCCCChHHHHHh----cCCchHHHHHhh
Confidence            5688999999999999999 7788887      699999999999999999954    566777777653

>smart00248 ANK ankyrin repeats

Probab=88.11  E-value=1  Score=24.13  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           62 SGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        62 ~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      +|.||+|++..    .++.++++.|+..|..
T Consensus         1 ~~~~~l~~~~~----~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAE----NGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence            47899999965    4788999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=81.85  E-value=1.1  Score=46.87  Aligned_cols=71  Identities=17%  Similarity=0.039  Sum_probs=47.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccc------------cccCcccc------------------ccCCCCCCHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQAN------------ASQGLEVN------------------AINHSGVTAFD   68 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~------------~~~~v~vn------------------~~N~~G~TaLd   68 (286)
                      ..|.-|.++||+|..+.+. ++++|++++-.            ....+++.                  ..-..+-||+.
T Consensus        57 c~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli  136 (822)
T KOG3609|consen   57 CRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM  136 (822)
T ss_pred             ccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH
Confidence            4677888888888877777 77777775200            00011211                  11234679999


Q ss_pred             HHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           69 LLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        69 iA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|++    .++.||+++|+..|+...
T Consensus       137 LAAh----~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  137 LAAH----LNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHH----hcchHHHHHHHHcCCCCC
Confidence            9975    568899999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
            L  + +L            + A N++G T     L   S  G   I E+L S GA
Sbjct: 90  CLASVGVLTQSCTTPHLHSILKATNYNGHTC----LHLASIHGYLGIVELLVSLGA 141

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 11/75 (14%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA-TGM 94
           +  ++ LLL   A+      VN + + G +                I++ L         
Sbjct: 163 NPDLVSLLLKCGAD------VNRVTYQGYSP----YQLTWGRPSTRIQQQLGQLTLENLQ 212

Query: 95  RDDNQTSVDNLAVSS 109
                   ++    S
Sbjct: 213 MLPESEDEESYDTES 227

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
            L  + +L    A       ++  +  G       +    E G R+I   L +A  
Sbjct: 90  FLDTLVVLHRAGAR------LDVCDAWGRLP----VDLAEEQGHRDIARYLHAATG 135

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.6 bits (99), Expect = 7e-05
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
             ++ +LLL H A+          N  G T  DL      + GD +I+++LR   A
Sbjct: 120 KYEICKLLLQHGAD------PTKKNRDGNTPLDL-----VKDGDTDIQDLLRGDAA 164

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 39.6 bits (94), Expect = 7e-05
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          HL+V++LLL   A+      VNA + +G T     L   +  G  E+ ++L  AGA
Sbjct: 47 HLEVVKLLLEAGAD------VNAKDKNGRTP----LHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          HL+V++LLL   A+      VNA + +G T     L   +  G  E+ ++L  AGA
Sbjct: 14 HLEVVKLLLEAGAD------VNAKDKNGRTP----LHLAARNGHLEVVKLLLEAGA 59

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 11/77 (14%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95
           +  +++LLL   A        +  N     AFD+     + A    + +  +   A    
Sbjct: 152 YADIVQLLLAKGAR------TDLRNIEKKLAFDM----ATNAACASLLKKKQGTDAVRTL 201

Query: 96  DDNQTSVDNLAVSSAET 112
            + +  + +   S  E 
Sbjct: 202 SNAEDYL-DDEDSDLEH 217

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           H+ +++LLL + A+       NA+N  G+      +    +   + +  +     +
Sbjct: 88  HVDIVKLLLSYGAS------RNAVNIFGLRP----VDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           HL+V+ELLL H+A       VN   +   +     L   ++ G  +I ++L S GA
Sbjct: 55  HLKVVELLLQHKAL------VNTTGYQNDSP----LHDAAKNGHVDIVKLLLSYGA 100

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           +  +E LL + ++       N  +H+G T     L      G  ++ E+L    A
Sbjct: 22 DIPSVEYLLQNGSD------PNVKDHAGWTP----LHEACNHGHLKVVELLLQHKA 67

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 10/63 (15%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95
             +  ++LL H AN       +  +H              E    +I  +L         
Sbjct: 170 SYETAKVLLDHFAN------RDITDHMDRLP----RDIAQERMHHDIVRLLDEYNLVRSP 219

Query: 96  DDN 98
             +
Sbjct: 220 QLH 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 10/68 (14%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95
              V+ LL+   A+        A++  G TA         E         L  + A G  
Sbjct: 58  LPSVVRLLVTAGAS------PMALDRHGQTA----AHLACEHRSPTCLRALLDSAAPGTL 107

Query: 96  DDNQTSVD 103
           D    + D
Sbjct: 108 DLEARNYD 115

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 39.6 bits (94), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           HL+V++LLL   A+      VNA + +G T     L   +  G  E+ ++L  AGA
Sbjct: 80  HLEVVKLLLEAGAD------VNAKDKNGRTP----LHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.1 bits (90), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          HL+V++LLL   A+      VNA + +G T     L   +  G  E+ ++L  AGA
Sbjct: 14 HLEVVKLLLEAGAD------VNAKDKNGRTP----LHLAARNGHLEVVKLLLEAGA 59

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 37.7 bits (89), Expect = 8e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          HL+V++LLL   A+      VNA + +G T     L   +  G  E+ ++L  AGA
Sbjct: 47 HLEVVKLLLEAGAD------VNAKDKNGRTP----LHLAARNGHLEVVKLLLEAGA 92

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
            L  + +L    A       ++  +  G       +    E G R++   LR+A  
Sbjct: 90  FLDTLVVLHRAGAR------LDVRDAWGRLP----VDLAEELGHRDVARYLRAAAG 135

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           + V+E LL + A+         +     +A    L      G  +I ++L   G 
Sbjct: 48 QIAVVEFLLQNGAD------PQLLGKGRESA----LSLACSKGYTDIVKMLLDCGV 93

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           H++ +++LL   A+            SG  +    +      G R +++++ S   
Sbjct: 114 HVKCVKMLLESGAD------PTIETDSGYNS----MDLAVALGYRSVQQVIESHLL 159

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
              + +L+ + A+      V A + +G T     L   +  G  E+ ++L  AGA
Sbjct: 36 QDDEVRILMANGAD------VAAKDKNGSTP----LHLAARNGHLEVVKLLLEAGA 81

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.0 bits (95), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           HL+++E+LL + A+      VNA++H+G+T     L   +  G  EI E+L   GA
Sbjct: 59  HLEIVEVLLKNGAD------VNAVDHAGMTP----LRLAALFGHLEIVEVLLKNGA 104

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          H   ++ LLG  A       ++  N  G TA    L   +  G+    E L +AGA
Sbjct: 21 HEPFLDFLLGFSAGHE---YLDLQNDLGQTA----LHLAAILGEASTVEKLYAAGA 69

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 12/79 (15%), Positives = 17/79 (21%), Gaps = 14/79 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95
               +E L    A       V      G TA    L             +L         
Sbjct: 57  EASTVEKLYAAGAG------VLVAERGGHTA----LHLACRVRAHTCACVLLQPRP---- 102

Query: 96  DDNQTSVDNLAVSSAETNP 114
              + + D     S +  P
Sbjct: 103 SHPRDASDTYLTQSQDCTP 121

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
             +++ ++    +       +  N  G+TA    L +   AG  EI + L   G 
Sbjct: 49 EFDLVQRIIYEVDD------PSLPNDEGITA----LHNAVCAGHTEIVKFLVQFGV 94

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 9/57 (15%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHS-GVTAFDLLLISPSEAGDREIEEILRSAGA 91
           ++QV + L+   A       V A+ +S   TA D       E G  +  + L     
Sbjct: 115 NVQVCKFLVESGAA------VFAMTYSDMQTAAD--KCEEMEEGYTQCSQFLYGVQE 163

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          H + ++ LL   A+      VNA +  G T     L   ++ G  EI ++L + GA
Sbjct: 21 HAEEVKKLLSKGAD------VNARSKDGNTP----LHLAAKNGHAEIVKLLLAKGA 66

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          H ++++LLL   A+      VNA +  G T          + G  EI ++L + GA
Sbjct: 54 HAEIVKLLLAKGAD------VNARSKDGNTP----EHLAKKNGHHEIVKLLDAKGA 99

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           ++ +  LL   A+       + +     +A    L   S  G  +I  +L     
Sbjct: 48 EIETVRFLLEWGAD------PHILAKERESA----LSLASTGGYTDIVGLLLERDV 93

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           H++ +E LL   A+      +     SG T     +      G R++++++ +   
Sbjct: 114 HVKCVEALLARGAD------LTTEADSGYTP----MDLAVALGYRKVQQVIENHIL 159

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 34  WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG 93
           W   +   +L+ +  +      + A+N  G TAFD+      E     +EE+ +      
Sbjct: 242 WGKEEACRILVENLCD------MEAVNKVGQTAFDV----ADEDILGYLEELQKKQNLLH 291

Query: 94  MRDDNQTS 101
                + S
Sbjct: 292 SEKREKKS 299

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 9/56 (16%), Positives = 13/56 (23%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
               + L L   ++      V   N  G T     L   S          +  A  
Sbjct: 189 RYDCVVLFLSRDSD------VTLKNKEGETP----LQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          H+ +  +L+   AN      ++  +    T     L+  +E    E  + L  AGA
Sbjct: 23 HVDICHMLVQAGAN------IDTCSEDQRTP----LMEAAENNHLEAVKYLIKAGA 68

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           HL+++E+LL + A+      VNA++  G T     L   +  G  EI E+L   GA
Sbjct: 59  HLEIVEVLLKNGAD------VNAVDAIGFTP----LHLAAFIGHLEIAEVLLKHGA 104

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
            ++V+  L+   A+      V A++ +  TA               I +I      
Sbjct: 325 RIEVVMYLIQQGAS------VEAVDATDHTA----RQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 36  HLQVIELLLGHQANA--SQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
             +  E L+ H+A    + G +VNA++    T     L+    A  R +   L  AGA
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTP----LMLAVLARRRRLVAYLMKAGA 190

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          + ++   LL   AN       +  + +G       +   + AG  +  + L    A
Sbjct: 49 NPEIARRLLLRGAN------PDLKDRTGFAV----IHDAARAGFLDTLQTLLEFQA 94

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           HL+V+E L+ H A+      V   NH G TA           G  E+  ++++ GA
Sbjct: 115 HLRVVEFLVKHTAS-----NVGHRNHKGDTA----CDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.5 bits (91), Expect = 7e-04
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT 92
            L  ++ LL  QA+      VN  ++ G       L   ++ G   + E L    A+
Sbjct: 82  FLDTLQTLLEFQAD------VNIEDNEGNLP----LHLAAKEGHLRVVEFLVKHTAS 128

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           L+++E LL   A+      +NA +   +T     L+S    G     ++L S GA
Sbjct: 52 QLEILEFLLLKGAD------INAPDKHHITP----LLSAVYEGHVSCVKLLLSKGA 97

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
            +V E+L            V+ ++  G T     L       D EI + L   GA
Sbjct: 18 TKKVKEILQDTTYQ------VDEVDTEGNTP----LNIAVHNNDIEIAKALIDRGA 63

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           +  VI LLL   AN      V+A N  G +A    L    +  +  +   L+ A  
Sbjct: 189 NTTVISLLLEAGAN------VDAQNIKGESA----LDLAKQRKNVWMINHLQEARQ 234

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
            L + E LL   +N      VN  + SG T     L+     G  E+   L   GA
Sbjct: 80  RLGIAEKLLSKGSN------VNTKDFSGKTP----LMWSIIFGYSEMSYFLLEHGA 125

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
             +   LL   A+       N  + SG +     +   +  G  +  ++L   GA
Sbjct: 47 STAIALELLKQGAS------PNVQDTSGTSP----VHDAARTGFLDTLKVLVEHGA 92

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
             ++ELLL H A+            +G T      +  + AG  ++ ++  S GA
Sbjct: 51 REDIVELLLRHGAD------PVLRKKNGATP----FLLAAIAGSVKLLKLFLSKGA 96

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.1 bits (90), Expect = 8e-04
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 10/56 (17%)

Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
          H    E+LL    +       +A      T     L   +  G   I E+L   GA
Sbjct: 46 HFSTTEVLLRAGVS------RDARTKVDRTP----LHMAASEGHANIVEVLLKHGA 91

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 10/65 (15%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95
               +  L+    +          N  G TA    L    + G  +  + L S G     
Sbjct: 32  QTDEVRRLIETGVS------PTIQNRFGCTA----LHLACKFGCVDTAKYLASVGEVHSL 81

Query: 96  DDNQT 100
              Q 
Sbjct: 82  WHGQK 86

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.4 bits (93), Expect = 9e-04
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           H  +++LLL + AN       N    +G T     L   +  G  E    L    A
Sbjct: 92  HTNMVKLLLENNAN------PNLATTAGHTP----LHIAAREGHVETVLALLEKEA 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.22
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.14
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	98.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	98.94
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	98.94
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	98.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	98.93
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	98.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	98.92
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	98.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	98.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	98.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	98.88
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	98.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	98.88
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	98.87
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	98.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	98.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.86
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	98.84
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	98.83
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.83
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	98.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	98.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	98.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	98.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	98.81
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	98.8
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	98.8
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	98.79
3v30_A	172	DNA-binding protein rfxank; structural genomics co	98.79
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	98.79
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	98.78
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	98.78
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	98.78
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	98.77
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	98.77
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	98.77
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	98.76
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	98.76
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	98.75
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	98.75
3v30_A	172	DNA-binding protein rfxank; structural genomics co	98.75
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	98.73
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	98.73
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	98.73
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	98.72
2rfa_A	232	Transient receptor potential cation channel subfa	98.72
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	98.71
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	98.71
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	98.7
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	98.7
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	98.7
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	98.7
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	98.69
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	98.68
3hra_A	201	Ankyrin repeat family protein; structural protein;	98.68
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	98.68
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	98.67
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.67
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	98.67
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	98.67
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	98.66
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	98.66
2etb_A	256	Transient receptor potential cation channel subfam	98.65
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	98.65
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.65
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	98.65
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	98.64
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	98.64
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	98.64
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	98.64
3jxi_A	260	Vanilloid receptor-related osmotically activated p	98.63
2etb_A	256	Transient receptor potential cation channel subfam	98.62
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	98.61
2pnn_A	273	Transient receptor potential cation channel subfa	98.61
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.61
2pnn_A	273	Transient receptor potential cation channel subfa	98.6
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.6
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	98.6
2rfa_A	232	Transient receptor potential cation channel subfa	98.6
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	98.59
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	98.59
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.59
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	98.59
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.58
3hra_A	201	Ankyrin repeat family protein; structural protein;	98.57
3jxi_A	260	Vanilloid receptor-related osmotically activated p	98.57
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	98.56
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	98.56
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	98.54
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	98.53
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.53
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.53
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.51
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	98.49
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	98.49
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	98.49
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.49
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.48
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.45
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	98.45
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	98.42
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	98.41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	98.4
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.27
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	97.72
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	97.71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.22  E-value=2.2e-11  Score=90.73  Aligned_cols=63  Identities=30%  Similarity=0.346  Sum_probs=52.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|.+|.+|+||||+|..    .++.+++++|+++|+.
T Consensus        30 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~t~l~~A~~----~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           30 AKDKNGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence            4788888888888888888 8888888      488888888888888888865    5677888888888863

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.14  E-value=4.8e-11  Score=99.92  Aligned_cols=67  Identities=24%  Similarity=0.271  Sum_probs=57.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|.+|.+|+||||+|+.    .++.+++++|++.|++....
T Consensus        65 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~------~gadvn~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~gad~~~~  132 (169)
T 4gpm_A           65 AKDSDGRTPLHHAAENGHKEVVKLLIS------KGADVNAKDSDGRTPLHHAAE----NGHKEVVKLLISKGADVNTS  132 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             hhccCCCCHHHHHHHcCCHHHHHHHHH------CcCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcccc
Confidence            5788899999999999999 9999998      488999999999999999975    56788999999998886543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.09  E-value=1.7e-10  Score=96.50  Aligned_cols=66  Identities=24%  Similarity=0.272  Sum_probs=59.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .+++++.+|.+|.||||+|+.    .++.+++++|++.|++...
T Consensus        32 ~~d~~g~t~l~~a~~~~~~~~~~~ll~------~gad~~~~d~~g~TpLh~A~~----~g~~~~v~~Ll~~gadvn~   98 (169)
T 4gpm_A           32 ASDSDGRTPLHHAAENGHKEVVKLLIS------KGADVNAKDSDGRTPLHHAAE----NGHKEVVKLLISKGADVNA   98 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHh------cccchhhhccCCCCHHHHHHH----cCCHHHHHHHHHCcCCCCC
Confidence            4799999999999999999 9999998      499999999999999999976    5688999999999998754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.08  E-value=2.1e-10  Score=85.34  Aligned_cols=62  Identities=29%  Similarity=0.321  Sum_probs=54.7

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +|+||||+|+..++. ++++|++      .++++|.+|.+|.||||+|..    .++.+++++|++.|++...
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~   63 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGADVNA   63 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCc
Confidence            589999999999999 9999998      499999999999999999976    5688999999999987543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.04  E-value=3.2e-10  Score=88.41  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=58.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|.+|.+|+||||+|..    .++.+++++|++.|++..
T Consensus        35 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~  100 (123)
T 3aaa_C           35 RTLEGGRKPLHYAADCGQLEILEFLLL------KGADINAPDKHHITPLLSAVY----EGHVSCVKLLLSKGADKT  100 (123)
T ss_dssp             SCCTTSSCHHHHHHHTTCHHHHHHHHT------TTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            4788999999999999999 9999998      489999999999999999976    567899999999998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=98.96  E-value=5.9e-10  Score=88.50  Aligned_cols=63  Identities=22%  Similarity=0.076  Sum_probs=40.3

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCC-CCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHS-GVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~-G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|.+|+||||+|+. ++. ++++|++      .++++|.+|.. |.||||+|..    .++.+++++|++.|++..
T Consensus        41 ~~~~g~t~L~~A~~-~~~~~v~~Ll~------~g~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  105 (136)
T 1d9s_A           41 LNRFGRRPIQVMMM-GSAQVAELLLL------HGAEPNCADPATLTRPVHDAAR----EGFLDTLVVLHRAGARLD  105 (136)
T ss_dssp             CCTTCCTTTTTSTT-SCHHHHHHHHH------HTCCSSCCBTTTTBCHHHHHHH----HTCHHHHHHHHHTCCCCC
T ss_pred             cCCCCCCHHHHHHc-CCHHHHHHHHH------CCCCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            56666666666666 666 6666666      36666666666 6666666654    345666666666666543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=98.94  E-value=1.4e-09  Score=86.19  Aligned_cols=65  Identities=22%  Similarity=0.085  Sum_probs=49.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .+++++.+|..|.||||+|..    .++.+++++|++.|++..
T Consensus        38 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  103 (137)
T 3c5r_A           38 VKDHAGWTPLHEACNHGHLKVVELLLQ------HKALVNTTGYQNDSPLHDAAK----NGHVDIVKLLLSYGASRN  103 (137)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCGGGCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCcccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            3677788888888888888 8888887      377788888888888888865    456778888888777654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=98.94  E-value=6.8e-10  Score=85.33  Aligned_cols=63  Identities=24%  Similarity=0.221  Sum_probs=38.6

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      +|.+|+||||+|+..++. ++++|++      .++++|..|..|.||||+|+.    .++.+++++|++.|++.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~d~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~   68 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLS------KGADVNARSKDGNTPLHLAAK----NGHAEIVKLLLAKGADV   68 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTT------TTCCSSCCCSSSCCTTHHHHT----TTCHHHHHHHTTTTCCT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCC
Confidence            566666666666666666 6666665      356666666666666666643    34556666666666554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=98.93  E-value=1.1e-09  Score=98.60  Aligned_cols=64  Identities=13%  Similarity=0.111  Sum_probs=41.9

Q ss_pred             ccCCCChHHHHHHHh---CcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWI---HLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~---~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .|.+|+||||+|+..   ++. ++++|++      .|+++|.+|.+|+||||+|+.    .++.+++++|+++|++..
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~------~ga~in~~d~~g~TpLh~A~~----~g~~~~v~~Ll~~gad~~  232 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIVDFLVQ------NSGNLDKQTGKGSTALHYCCL----TDNAECLKLLLRGKASIE  232 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHH------HCSCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             cccCCCCcchHHHHhcccchHHHHHHHHH------CCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            456677777777766   556 6666666      366666677777777777654    455666666666666654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=98.93  E-value=1.8e-09  Score=83.10  Aligned_cols=66  Identities=29%  Similarity=0.310  Sum_probs=55.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .+.+++.+|..|.||||+|..    .++.+++++|++.|++...
T Consensus        30 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~g~~~~~   96 (126)
T 1n0r_A           30 AKDKNGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGADVNA   96 (126)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCCcHHHHHHHcCcHHHHHHHHH------cCCCCcccCCCCCcHHHHHHH----cChHHHHHHHHHcCCCCcc
Confidence            4678899999999999998 9999988      488888899999999999875    5677888999988887653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=98.92  E-value=1.5e-09  Score=83.53  Aligned_cols=65  Identities=22%  Similarity=0.230  Sum_probs=56.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ..|.+|+||||+|+..++. ++++|++      .++++|.+|..|.||||+|+.    .++.+++++|+..|++..
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~i~~~d~~g~tpLh~A~~----~~~~~~v~~Ll~~ga~~~   84 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMA------NGADVAAKDKNGSTPLHLAAR----NGHLEVVKLLLEAGADVX   84 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc
Confidence            6799999999999999999 9999998      489999999999999999976    568899999999988654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=98.92  E-value=1.9e-09  Score=85.52  Aligned_cols=65  Identities=31%  Similarity=0.313  Sum_probs=57.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|..|.+|.||||+|..    .++.+++++|++.|++..
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  107 (136)
T 2jab_A           42 AKDEYGLTPLYLATAHGHLEIVEVLLK------NGADVNAVDAIGFTPLHLAAF----IGHLEIAEVLLKHGADVN  107 (136)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCc
Confidence            4788999999999999999 9999998      489999999999999999975    567899999999987654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=98.91  E-value=1.6e-09  Score=83.27  Aligned_cols=66  Identities=26%  Similarity=0.286  Sum_probs=59.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .+++++.+|..|.||||+|..    .++.+++++|++.|++...
T Consensus        37 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~n~  103 (115)
T 2l6b_A           37 ARSKDGNTPLHLAAKNGHAEIVKLLLA------KGADVNARSKDGNTPEHLAKK----NGHHEIVKLLDAKGADVNA  103 (115)
T ss_dssp             CCCSSSCCTTHHHHTTTCHHHHHHHTT------TTCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTSSSHHH
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHH------cCCCCcccCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCCCc
Confidence            5789999999999999999 9999998      499999999999999999975    5688999999999987653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=98.91  E-value=2e-09  Score=85.35  Aligned_cols=61  Identities=33%  Similarity=0.461  Sum_probs=55.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      .+|.+|+||||+|+..++. ++++|+++      +++++.+|.+|.||||+|..    .++.+++++|++.|
T Consensus        75 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           75 AVDAIGFTPLHLAAFIGHLEIAEVLLKH------GADVNAQDKFGKTAFDISIG----NGNEDLAEILQKLN  136 (136)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHC-
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCcCcCCCCCCHHHHHHH----CCCHHHHHHHHHcC
Confidence            4789999999999999999 99999984      99999999999999999976    56789999999876

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.90  E-value=2e-09  Score=93.74  Aligned_cols=66  Identities=15%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .++++|.+|.+|.||||+|+.    .++.+++++|+++|++...
T Consensus        65 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  131 (239)
T 1ycs_B           65 LPNDEGITALHNAVCAGHTEIVKFLVQ------FGVNVNAADSDGWTPLHCAAS----CNNVQVCKFLVESGAAVFA  131 (239)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------HTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcce
Confidence            4689999999999999999 9999998      499999999999999999975    5788999999999987653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=98.89  E-value=3.2e-09  Score=85.61  Aligned_cols=62  Identities=23%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      +|.+|+||||+|+..++. ++++|++      .++++|.+|..|.||||+|..    .++.+++++|++.|++
T Consensus        63 ~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~  125 (153)
T 1awc_B           63 RTKVDRTPLHMAASEGHANIVEVLLK------HGADVNAKDMLKMTALHWATE----HNHQEVVELLIKYGAD  125 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHT------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence            344455555555544444 4555444      244455555555555555533    2344455555544443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=98.88  E-value=3e-09  Score=88.72  Aligned_cols=65  Identities=18%  Similarity=0.159  Sum_probs=55.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|.+| .+|+||||+|..    .++.+++++|++.|++..
T Consensus        71 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~  137 (183)
T 3deo_A           71 AVDENGRTALLFVAGLGSDKCVRLLAE------AGADLDHRDMRGGLTALHMAAG----YVRPEVVEALVELGADIE  137 (183)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCSSSSCCHHHHHHH----TTCHHHHHHHHHHTCCTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCcCCCCCCCCHHHHHHh----cCcHHHHHHHHHcCCCCc
Confidence            4788999999999999999 9999998      488999888 889999999975    567889999999887654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=98.88  E-value=2e-09  Score=96.19  Aligned_cols=65  Identities=28%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|..|..|.||||+|+.    .++.+++++|+++|++..
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~------~gadvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLLQ------HGASINASNNKGNTALHEAVI----EKHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHHH------TTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHH------CCCCCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            4789999999999999999 9999998      489999999999999999976    568899999999998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=98.88  E-value=4e-09  Score=83.49  Aligned_cols=65  Identities=18%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .+.++|.+|..|.||||+|..    .++.+++++|++.|+...
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~   70 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQ------NGSDPNVKDHAGWTPLHEACN----HGHLKVVELLLQHKALVN   70 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCccc
Confidence            4789999999999999999 9999998      489999999999999999976    568899999999987644

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=98.87  E-value=4e-09  Score=85.85  Aligned_cols=64  Identities=22%  Similarity=0.252  Sum_probs=34.4

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .|.+|+||||+|+..++. ++++|++      .++++|..|.+|.||||+|..    .++.+++++|++.|++..
T Consensus        38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  102 (165)
T 3twr_A           38 IEGRQSTPLHFAAGYNRVSVVEYLLQ------HGADVHAKDKGGLVPLHNACS----YGHYEVAELLVKHGAVVN  102 (165)
T ss_dssp             TTTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             cccCCCCHHHHHHHcChHHHHHHHHh------cCCCCCccCCCCCCHHHHHHH----cCcHHHHHHHHhCCCCCC
Confidence            344555555555555555 5555555      255555555555555555543    334455555555555443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=98.87  E-value=3e-09  Score=86.06  Aligned_cols=64  Identities=17%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      .+|.+|+||||+|+..++. ++++|+++      ++++|.+|.+|.||||+|..    .++.+++++|++.|+..
T Consensus        65 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~  129 (162)
T 1ihb_A           65 LKDRTGFAVIHDAARAGFLDTLQTLLEF------QADVNIEDNEGNLPLHLAAK----EGHLRVVEFLVKHTASN  129 (162)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHccCCC
Confidence            4788999999999999999 99999984      89999999999999999976    56789999999999874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=98.87  E-value=1.6e-09  Score=87.98  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=44.4

Q ss_pred             cccCCCCh-HHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDY-KEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnT-pLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+| |||+|+..++. ++++|++      .|+++|.+|..|.||||+|..    .++.+++++|+++|++..
T Consensus        72 ~~d~~g~ttpL~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~tpl~~A~~----~~~~~~v~~Ll~~ga~~~  138 (156)
T 1bi7_B           72 CADPATLTRPVHDAAREGFLDTLVVLHR------AGARLDVRDAWGRLPVDLAEE----LGHRDVARYLRAAAGGTR  138 (156)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHH------HTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHSSCC----
T ss_pred             CcCCCCCcHHHHHHHHCCCHHHHHHHHH------cCCCCcccCCCCCCHHHHHHH----hCHHHHHHHHHHcCCCCC
Confidence            35677777 77777777777 7777777      377777777777777777754    456677777777776554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.86  E-value=2.8e-09  Score=91.24  Aligned_cols=67  Identities=21%  Similarity=0.217  Sum_probs=58.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|+++     .++++|.+|.+|.||||+|+.    .++.+++++|+..|++...
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~g~~~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  168 (222)
T 3ehr_A          101 GLDKAGSTALYWACHGGHKDIVEMLFTQ-----PNIELNQQNKLGDTALHAAAW----KGYADIVQLLLAKGARTDL  168 (222)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHTTS-----TTCCCCCCCTTSCCHHHHHHH----HTCHHHHHHHHHHTCCSCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHcC-----CCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            4788999999999999999 99999985     589999999999999999975    5678999999999887653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=98.84  E-value=5.9e-09  Score=86.26  Aligned_cols=64  Identities=22%  Similarity=0.152  Sum_probs=37.8

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|.+|+||||+|+..++. ++++|++      .++++|..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   99 (179)
T 3f6q_A           35 GDDHGFSPLHWACREGRSAVVEMLIM------RGARINVMNRGDDTPLHLAAS----HGHRDIVQKLLQYKADIN   99 (179)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            455666666666666666 6666665      256666666666666666644    345556666666655543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=98.83  E-value=3.5e-09  Score=96.19  Aligned_cols=66  Identities=21%  Similarity=0.182  Sum_probs=60.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. +++.|+..     .++++|.+|.+|+||||+|+.    .++.+++++|+++||+..
T Consensus       234 ~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-----~~~~vn~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          234 VRGERGKTPLILAVEKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             CCCGGGCCHHHHHHHTTCHHHHHHHHTS-----TTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSST
T ss_pred             CcCCCCCCHHHHHHHhhhhHHHHHHHHh-----cCCcccCcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            4788999999999999999 99999986     689999999999999999976    678899999999998654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.83  E-value=5.7e-09  Score=90.99  Aligned_cols=66  Identities=21%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|+++     .++++|.+|.+|.||||+|..    .++.+++++|++.|++..
T Consensus       214 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~g~~~~~~~~~g~t~l~~A~~----~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          214 VRGERGKTPLILAVEKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHS-----SSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSC
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHhc-----cCCCccccCCCCCcHHHHHHH----cCcHHHHHHHHHcCCCCC
Confidence            4677888888888888888 88888875     588888888888888888865    567788888888888754

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=98.82  E-value=6.6e-09  Score=90.95  Aligned_cols=61  Identities=25%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .|+||||+|+..++. ++++|++      .|+++|.+|..|+||||+|..    .++.+++++|+++|++..
T Consensus       191 ~g~tpL~~A~~~~~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          191 CGRTPLHLAVEAQAASVLELLLK------AGADPTARMYGGRTPLGSALL----RPNPILARLLRAHGAPEP  252 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHT----SSCHHHHHHHHHTTCCCC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHH------cCCCCcccccCCCCHHHHHHH----cCCcHHHHHHHHcCCCcC
Confidence            477777777777777 7777776      377777777777777777754    456677777777777654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=98.82  E-value=6.7e-09  Score=91.02  Aligned_cols=66  Identities=18%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .++++|..| ..|.||||+|..    .++.+++++|+.+|++...
T Consensus        72 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~~~  139 (244)
T 3ui2_A           72 AVDENGRTALLFVAGLGSDKCVRLLAE------AGADLDHRDMRGGLTALHMAAG----YVRPEVVEALVELGADIEV  139 (244)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHH------TTCCTTCCCSSSCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCCCHHHHHHHCCCHHHHHHHHH------cCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            4789999999999999999 9999998      499999998 889999999976    5788999999999987653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=98.82  E-value=4.9e-09  Score=80.56  Aligned_cols=57  Identities=32%  Similarity=0.421  Sum_probs=51.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEIL   86 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L   86 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|..|.||||+|..    .++.+++++|
T Consensus        52 ~~d~~g~tpLh~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~L  109 (110)
T 2zgd_A           52 AKDKNGSTPLHLAARNGHLEVVKLLLE------AGADVXAQDKFGKTAFDISID----NGNEDLAEIL  109 (110)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccccccCCCcHHHHHHH----cCCHHHHHHh
Confidence            4789999999999999999 9999998      499999999999999999975    5677887766

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=98.81  E-value=7e-09  Score=83.84  Aligned_cols=65  Identities=14%  Similarity=-0.015  Sum_probs=58.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+. ++. ++++|++      .++++|..|..|.||||+|..    .++.+++++|++.|++...
T Consensus        33 ~~~~~g~t~L~~A~~-~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~   98 (162)
T 1ihb_A           33 AQNGFGRTALQVMKL-GNPEIARRLLL------RGANPDLKDRTGFAVIHDAAR----AGFLDTLQTLLEFQADVNI   98 (162)
T ss_dssp             CCCTTSCCHHHHCCS-SCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             ccCccCccHHHHHHc-CcHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            478999999999998 999 9999998      489999999999999999976    5678999999999987654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=98.81  E-value=6.4e-09  Score=93.49  Aligned_cols=66  Identities=18%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|.+|.+|.||||+|..    .++.+++++|+++|+.+..
T Consensus       200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  266 (278)
T 1dcq_A          200 KQTGKGSTALHYCCLTDNAECLKLLLR------GKASIEIANESGETPLDIAKR----LKHEHCEELLTQALSGRFN  266 (278)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            5799999999999999999 9999999      499999999999999999976    5688999999999986543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=98.80  E-value=7.2e-09  Score=90.27  Aligned_cols=66  Identities=17%  Similarity=0.090  Sum_probs=56.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|..|.+|.||||+|..    .++.+++++|++.|++...
T Consensus        49 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~------~ga~~n~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~ga~~~~  115 (229)
T 2vge_A           49 QPNEEGITALHNAICGANYSIVDFLIT------AGANVNSPDSHGWTPLHCAAS----CNDTVICMALVQHGAAIFA  115 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCccc
Confidence            4788899999999999999 9999998      488999999999999999975    5678899999988887653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=98.80  E-value=1e-08  Score=87.12  Aligned_cols=66  Identities=17%  Similarity=0.052  Sum_probs=55.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|+++      ++++|..|..|.||||+|..    .++.+++++|++.|++...
T Consensus       120 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          120 AVDDLGKSALHWAAAVNNVDAAVVLLKN------GANKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            4688899999999999999 99999984      88899999999999999965    5677899999999887654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=98.79  E-value=7.3e-09  Score=89.19  Aligned_cols=65  Identities=23%  Similarity=0.279  Sum_probs=47.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|. .|.||||+|..    .++.+++++|++.|++..
T Consensus       112 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~  178 (236)
T 1ikn_D          112 ATNYNGHTCLHLASIHGYLGIVELLVS------LGADVNAQEPCNGRTALHLAVD----LQNPDLVSLLLKCGADVN  178 (236)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHTTTCCSC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            4667777777777777777 7777777      3777777776 77777777764    456677777777777654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=98.79  E-value=1.2e-08  Score=83.64  Aligned_cols=65  Identities=14%  Similarity=0.046  Sum_probs=43.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   96 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLE------WGADPHILAKERESALSLAST----GGYTDIVGLLLERDVDIN   96 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCchhhcccCCCHHHHHHH----CCCHHHHHHHHHcCCCCC
Confidence            3566777777777777777 7777776      366677777777777777754    445666666666666554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=98.79  E-value=1.4e-08  Score=78.03  Aligned_cols=62  Identities=29%  Similarity=0.321  Sum_probs=47.4

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +|+||||+|+..++. ++++|++      .+.+++..|..|.||||+|..    .++.+++++|++.|+....
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~------~~~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~~   63 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGADVNA   63 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH------HTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH------cCCCCCCcCCCCCcHHHHHHH----cCcHHHHHHHHHcCCCCcc
Confidence            578888888888888 8888887      377788888888888888865    4567788888887776543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=98.78  E-value=1.2e-08  Score=84.39  Aligned_cols=66  Identities=20%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|+++      ++++|..|..|.||||+|..    .++.+++++|+..|++...
T Consensus        67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           67 VMNRGDDTPLHLAASHGHRDIVQKLLQY------KADINAVNEHGNVPLHYACF----WGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSSB
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCcch
Confidence            5788999999999999999 99999984      89999999999999999976    5678999999999987653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=98.78  E-value=9e-09  Score=85.98  Aligned_cols=65  Identities=25%  Similarity=0.212  Sum_probs=40.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .+.+++..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        63 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  128 (192)
T 2rfm_A           63 DKDIEGSTALIWAVKNNRLGIAEKLLS------KGSNVNTKDFSGKTPLMWSII----FGYSEMSYFLLEHGANVN  128 (192)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCSS
T ss_pred             cccccCccHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            3556666666666666666 6666666      366666666666666666654    345566666666666543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=98.78  E-value=1.3e-08  Score=83.60  Aligned_cols=65  Identities=32%  Similarity=0.420  Sum_probs=48.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .+++++..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~  107 (169)
T 2y1l_E           42 AEDASGWTPLHLAAFNGHLEIVEVLLK------NGADVNAVDHAGMTPLRLAAL----FGHLEIVEVLLKNGADVN  107 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            3577778888888877777 7787777      377777777778888887765    456677777777777654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=98.77  E-value=7.2e-09  Score=82.16  Aligned_cols=65  Identities=23%  Similarity=0.218  Sum_probs=58.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|+++      ++++|.+|..|.||||+|.    . ++.+++++|++.|++...
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~----~-~~~~~v~~Ll~~g~~~~~   72 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEA------GADPNALNRFGRRPIQVMM----M-GSAQVAELLLLHGAEPNC   72 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTCCTTTTTST----T-SCHHHHHHHHHHTCCSSC
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHc------CCCcCCcCCCCCCHHHHHH----c-CCHHHHHHHHHCCCCCCC
Confidence            4789999999999999999 99999984      8999999999999999994    4 788999999999986543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=98.77  E-value=4e-09  Score=96.00  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             ccCCCChHHHHHHHh---CcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           21 YDLSSDYKEQLKTWI---HLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        21 kD~~GnTpLHlAa~~---~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      +|.+|+||||+|+..   ++. ++++|++      .|+++|.+|.+|+||||+|+.    .++.+++++|++.|++.
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~------~gadvn~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~gad~  252 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQ------NGGHLDAKAADGNTALHYAAL----YNQPDCLKLLLKGRALV  252 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHH------HSSCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCC
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHh------cCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence            345555555555554   444 5555555      255555555555555555543    34455555555555554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=98.77  E-value=1.5e-08  Score=82.35  Aligned_cols=65  Identities=23%  Similarity=0.130  Sum_probs=53.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  135 (165)
T 3twr_A           70 AKDKGGLVPLHNACSYGHYEVAELLVK------HGAVVNVADLWKFTPLHEAAA----KGKYEICKLLLQHGADPT  135 (165)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHh------CCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCc
Confidence            4678888999999988888 8888888      488888888889999998865    567788888888887654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=98.76  E-value=1.4e-08  Score=82.76  Aligned_cols=64  Identities=19%  Similarity=0.143  Sum_probs=39.9

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|.+|+||||+|+..++. ++++|++      .+++++..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   96 (167)
T 3v31_A           32 TDEEGFTPLMWAAAHGQIAVVEFLLQ------NGADPQLLGKGRESALSLACS----KGYTDIVKMLLDCGVDVN   96 (167)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHHTCCTT
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHH------cCCCCCCcCCCCCcHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            566666666666666666 6666666      366666666666666666654    345566666666665544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=98.76  E-value=1e-08  Score=92.30  Aligned_cols=66  Identities=21%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|..|+||||+|..    .++.+++++|++.|++...
T Consensus       242 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          242 EKNKDFMTPLHVAAERAHNDVMEVLHK------HGAKMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCCC
Confidence            4788999999999999999 9999998      489999999999999999975    5688999999999987653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=98.75  E-value=1.2e-08  Score=89.24  Aligned_cols=65  Identities=17%  Similarity=0.062  Sum_probs=48.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|..|.||||+|..    .++.+++++|++.|++..
T Consensus       152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          152 AVDDLGKSALHWAAAVNNVDAAVVLLK------NGANKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCcc
Confidence            4577788888888877777 7788777      377777788888888888754    456677888888777654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=98.75  E-value=1.2e-08  Score=82.09  Aligned_cols=62  Identities=19%  Similarity=0.115  Sum_probs=31.8

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      +|.+|+||||+ +..++. ++++|++      .|+++|.+|..|.||||+|..    .++.+++++|++.|++.
T Consensus        32 ~~~~g~t~L~~-~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~   94 (156)
T 1bd8_A           32 LNRFGKTALQV-MMFGSTAIALELLK------QGASPNVQDTSGTSPVHDAAR----TGFLDTLKVLVEHGADV   94 (156)
T ss_dssp             CCTTSCCHHHH-SCTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCS
T ss_pred             cCCCCCcHHHH-HHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCC
Confidence            44555555555 445555 5555554      255555555555555555543    33445555555555443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=98.75  E-value=1.4e-08  Score=83.07  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=52.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        64 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  129 (172)
T 3v30_A           64 ILAKERESALSLASTGGYTDIVGLLLE------RDVDINIYDWNGGTPLLYAVR----GNHVKCVEALLARGADLT  129 (172)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHT------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             hhcccCCCHHHHHHHCCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc
Confidence            4678888888888888888 8888887      488888888888888888865    467788888888887654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=98.73  E-value=1.6e-08  Score=81.41  Aligned_cols=64  Identities=22%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .|.+|+||||+|+..++. ++++|++      .+++++..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   94 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLR------AGVSRDARTKVDRTPLHMAAS----EGHANIVEVLLKHGADVN   94 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHTTTCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHH----cChHHHHHHHHHcCCCCC
Confidence            688999999999999999 9999998      489999999999999999975    567899999999987654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=98.73  E-value=2.3e-08  Score=82.00  Aligned_cols=61  Identities=28%  Similarity=0.291  Sum_probs=33.2

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      ..+.|+||.|+..|+. ++++|+++      +.++|..|.+|.||||+|..    .++.+++++|++.|++.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~   73 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMAN------GADVNAEDASGWTPLHLAAF----NGHLEIVEVLLKNGADV   73 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence            3445555555555555 55555552      55555555555555555543    34455555555555543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=98.73  E-value=2e-08  Score=89.08  Aligned_cols=65  Identities=18%  Similarity=0.086  Sum_probs=59.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ..|..|.||||+|+..|+. ++++|++      .|+++|..|.+|.||||+|+.    .++.+++++|+..|++..
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~  259 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLIQ------ARYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDME  259 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHHH------cCCCCCCcCCCCCcHHHHHHh----cCCHHHHHHHHHcCCCCC
Confidence            4678899999999999999 9999998      489999999999999999976    678899999999998765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=98.72  E-value=1.4e-08  Score=90.55  Aligned_cols=65  Identities=20%  Similarity=0.142  Sum_probs=58.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH-cCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRS-AGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~-~Ga~~~   94 (286)
                      ..|.+|+||||+|+..|+. ++++|++      .|+++|.+|.+|+||||+|..    .++.+++++|+. .|++..
T Consensus       178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~------~gad~n~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~~gad~~  244 (276)
T 4hbd_A          178 KASQAGQTALMLAVSHGRVDVVKALLA------CEADVNVQDDDGSTALMCACE----HGHKEIAGLLLAVPSCDIS  244 (276)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTSTTCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCCCCCCCCCHHHHHHH----CCCHHHHHHHHhcCCCCCc
Confidence            4678899999999999999 9999999      499999999999999999976    567899999998 787654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=98.72  E-value=2.2e-08  Score=85.71  Aligned_cols=64  Identities=14%  Similarity=0.282  Sum_probs=55.4

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHH----HHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIE----EILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~----~~L~~~Ga~~~   94 (286)
                      +|.+|+||||+|+..++. ++++|++      .|+++|.+|.+|.||||+|..    .++.+++    ++|++.|+...
T Consensus       117 ~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~t~L~~A~~----~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          117 LIYYGEHPLSFAACVGSEEIVRLLIE------HGADIRAQDSLGNTVLHILIL----QPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             SCCCCSSHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHT----CSCHHHHHHHHHHHHHTTCSCS
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----cCChHHHHHHHHHHHhcCCchh
Confidence            456899999999999999 9999998      499999999999999999975    4455555    99999998654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=98.71  E-value=2e-08  Score=81.80  Aligned_cols=61  Identities=13%  Similarity=0.084  Sum_probs=36.7

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|+||||.|+..|+. ++++|++.      +.++|..|..|.||||+|..    .++.+++++|++.|++..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~------~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   63 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ------ENVINHTDEEGFTPLMWAAA----HGQIAVVEFLLQNGADPQ   63 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH------SSCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc------CCCcCCCCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCCC
Confidence            456666666666666 66666652      55566666666666666654    345566666666665544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=98.71  E-value=2.5e-08  Score=84.79  Aligned_cols=65  Identities=23%  Similarity=0.132  Sum_probs=39.0

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHH-HcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR-SAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~-~~Ga~~~   94 (286)
                      +|.+|+||||+|+..++. ++++|+++     ...++|.+|.+|+||||+|..    .++.+++++|+ +.|++..
T Consensus       136 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          136 KDKFNQIPLHRAASVGSLKLIELLCGL-----GKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYD  202 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTT-----TCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhc-----CcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCC
Confidence            455666666666666666 66666653     126666666666666666654    34556666666 5665543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=98.70  E-value=2.3e-08  Score=84.90  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      .+|.+|.||||+|+..++. ++++|++      .++++|..|..|.||||+|..    .++.+++++|++.|++....
T Consensus        87 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~  154 (223)
T 2f8y_A           87 ARMHDGTTPLILAARLAVEGMLEDLIN------SHADVNAVDDLGKSALHWAAA----VNNVDAAVVLLKNGANKDMQ  154 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHH------cCCCCcCcCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCCc
Confidence            4688999999999999999 9999998      489999999999999999976    56789999999999887643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=98.70  E-value=1.6e-08  Score=88.53  Aligned_cols=64  Identities=27%  Similarity=0.312  Sum_probs=45.4

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCcc---ccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLE---VNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~---vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|.+|+||||+|+..|+. ++++|+++      +.+   +|.+|..|.||||+|+.    .++.+++++|++.|++..
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~~   72 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGF------SAGHEYLDLQNDLGQTALHLAAI----LGEASTVEKLYAAGAGVL   72 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH------HTTSGGGGCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCSS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhc------CCCcccccccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            577777777777777777 77777763      444   67777777777777754    456677777777776654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=98.70  E-value=2.2e-08  Score=86.11  Aligned_cols=72  Identities=22%  Similarity=0.118  Sum_probs=52.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|+++.........++..|..|.||||+|..    .++.+++++|++.|++...
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~  145 (236)
T 1ikn_D           73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI----HGYLGIVELLVSLGADVNA  145 (236)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH----TTCHHHHHHHHHHTCCTTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            5788888888888888888 8888888521111123367788888888888865    5677888888888887654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=98.70  E-value=1.6e-08  Score=84.39  Aligned_cols=66  Identities=24%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|..|..|.||||+|..    .++.+++++|++.|++...
T Consensus        96 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A           96 TKDFSGKTPLMWSIIFGYSEMSYFLLE------HGANVNDRNLEGETPLIVASK----YGRSEIVKKLLELGADISA  162 (192)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            5789999999999999999 9999998      499999999999999999975    5678999999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=98.69  E-value=1.8e-08  Score=89.80  Aligned_cols=62  Identities=23%  Similarity=0.175  Sum_probs=56.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      .+|.+|+||||+|+..|+. ++++|++.     .|+++|.+|.+|.||||+|..    .++.+++++|++.+
T Consensus       211 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-----~gad~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          211 VQDDDGSTALMCACEHGHKEIAGLLLAV-----PSCDISLTDRDGSTALMVALD----AGQSEIASMLYSRM  273 (276)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHTS-----TTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhc-----CCCCCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhcc
Confidence            4799999999999999999 99999985     599999999999999999976    56889999998764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=98.68  E-value=3e-08  Score=89.15  Aligned_cols=66  Identities=23%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|..|.+|.||||+|..    .++.+++++|++.|++...
T Consensus        53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~g~~~~~  119 (351)
T 3utm_A           53 ASDGRKSTPLHLAAGYNRVRIVQLLLQ------HGADVHAKDKGGLVPLHNACS----YGHYEVTELLLKHGACVNA  119 (351)
T ss_dssp             CSSTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCcHHHHHHH----CCCHHHHHHHHHCCCCCCC
Confidence            4688899999999999999 9999998      488999999999999999976    5678899999998876553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=98.68  E-value=2e-08  Score=83.86  Aligned_cols=72  Identities=15%  Similarity=0.004  Sum_probs=60.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCC-CCCcHHHHHHHHHcCCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPS-EAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~-~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      .+|.+|+||||+|+..++. ++++|+++     ...++|.+|..|.||||+|..... ..++.+++++|++.|++....
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A          101 KHNRYGGNALIPAAEKGHIDNVKLLLED-----GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             CCCTTSCCSHHHHHHTTCHHHHHHHHHH-----CCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHc-----CCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence            5789999999999999999 99999995     339999999999999999986322 122378999999999987643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=98.68  E-value=2.7e-08  Score=88.19  Aligned_cols=66  Identities=17%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|..|..|.||||+|..    .++.+++++|+..|++...
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~g~tpL~~A~~----~g~~~~v~~Ll~~g~~~~~  134 (299)
T 1s70_B           68 YANVDGLTALHQACIDDNVDMVKFLVE------NGANINQPDNEGWIPLHAAAS----CGYLDIAEYLISQGAHVGA  134 (299)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHhCCCCCCC
Confidence            4688899999999999999 9999998      488999999999999999975    5678899999998876543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=98.67  E-value=2.9e-08  Score=77.09  Aligned_cols=64  Identities=19%  Similarity=0.052  Sum_probs=54.7

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+..|+||||+|+..++. ++++|+++      +.++|..|..|.||||+|..    .++.+++++|++.|++..
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~------~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   67 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAK------GEDVNRTLEGGRKPLHYAAD----CGQLEILEFLLLKGADIN   67 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHT------TCCTTSCCTTSSCHHHHHHH----TTCHHHHHHHHTTTCCTT
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHc------CCCcCccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            357899999999999999 99999984      89999999999999999976    567899999999987654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.67  E-value=2.4e-08  Score=92.72  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..|+. ++++|+++     .++++|.+|.+|.||||+|+.    .++.+++++|+..|++...
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-----~~~~~n~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVGE-----KGSNKDKQDEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHH-----SCCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHHh-----cCCCccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCccC
Confidence            4678899999999999999 99999975     458899999999999999965    5678899999999888653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=98.67  E-value=3.9e-08  Score=83.85  Aligned_cols=63  Identities=17%  Similarity=0.048  Sum_probs=37.1

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      +|..|+||||+|+..++. ++++|++      .++++|.+|.+|.||||+|..    .++.+++++|++.|++.
T Consensus       135 ~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          135 KDHYDATAMHRAAAKGNLKMVHILLF------YKASTNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASI  198 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHh------cCCCccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCC
Confidence            455566666666666666 6666665      255666666666666666643    34556666666666543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=98.67  E-value=3.3e-08  Score=84.57  Aligned_cols=69  Identities=20%  Similarity=0.183  Sum_probs=53.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++.  ....+.++|..|.+|.||||+|..    .++.+++++|++.|+...
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   73 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNL--FQQGGRELDIYNNLRQTPLHLAVI----TTLPSVVRLLVTAGASPM   73 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHH--HHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHH--HHhcCCCCCcccccCCCHHHHHHH----cCCHHHHHHHHHcCCCcc
Confidence            4788999999999999999 88888861  000478899999999999999976    567889999999887654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=98.66  E-value=1.3e-08  Score=86.16  Aligned_cols=68  Identities=16%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             cCCCChHHHHHHHhCc----H-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCC--CCcHHHHHHHHHcCCCCC
Q 023199           22 DLSSDYKEQLKTWIHL----Q-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSE--AGDREIEEILRSAGATGM   94 (286)
Q Consensus        22 D~~GnTpLHlAa~~~~----~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~--~~~~ei~~~L~~~Ga~~~   94 (286)
                      |.+|+||||+|+..++    . ++++|++      .|+++|.+|.+|+||||+|......  ....+++++|+.+|++..
T Consensus        35 ~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~------~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin  108 (186)
T 3t8k_A           35 SVLKSNILYDVLRNNNDEARYKISMFLIN------KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT  108 (186)
T ss_dssp             HHHTTTHHHHHTTCSCHHHHHHHHHHHHH------TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred             ccCCCCHHHHHHHcCCcchHHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence            3789999999999885    3 7999998      5999999999999999999763211  113578999999999776


Q ss_pred             C
Q 023199           95 R   95 (286)
Q Consensus        95 ~   95 (286)
                      .
T Consensus       109 ~  109 (186)
T 3t8k_A          109 A  109 (186)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=98.65  E-value=4.5e-08  Score=85.22  Aligned_cols=64  Identities=13%  Similarity=0.059  Sum_probs=56.9

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCC-------------CCCHHHHHhhCCCCCCcHHHHHHH
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHS-------------GVTAFDLLLISPSEAGDREIEEIL   86 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~-------------G~TaLdiA~~~~~~~~~~ei~~~L   86 (286)
                      +|.+|+||||+|+..|+. ++++|+++      |+++|..|..             |.||||+|+.    .++.+++++|
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~------ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~L  155 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVEN------GADVHLRACGRFFQKHQGTCFYFGELPLSLAAC----TKQWDVVTYL  155 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH----TTCHHHHHHH
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHc------CCCCCcccccccccccccccccCCCCHHHHHHH----cCCHHHHHHH
Confidence            457899999999999999 99999994      8999999987             9999999976    5688999999


Q ss_pred             HH---cCCCCC
Q 023199           87 RS---AGATGM   94 (286)
Q Consensus        87 ~~---~Ga~~~   94 (286)
                      ++   .|++..
T Consensus       156 l~~~~~ga~~n  166 (256)
T 2etb_A          156 LENPHQPASLE  166 (256)
T ss_dssp             HHCSSCCCCTT
T ss_pred             HhccccCCCcC
Confidence            99   887654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=98.65  E-value=1.4e-08  Score=92.20  Aligned_cols=65  Identities=18%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+.+|+|+||.|++.|+. +|++|++      .|+++|.++. .|+||||+|+.    .++.+++++|+++|+....
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~------~Gadvn~~~~~~g~TpLh~A~~----~g~~~iv~~Ll~~ga~~~~   87 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLE------GGANVNFQEEEGGWTPLHNAVQ----MSREDIVELLLRHGADPVL   87 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHH------CCCCCCccCCCCCcCHHHHHHH----cCCHHHHHHHHHcCCchhh
Confidence            356799999999999999 9999998      4999999986 49999999976    6788999999999998654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.65  E-value=2.1e-08  Score=91.99  Aligned_cols=61  Identities=13%  Similarity=0.097  Sum_probs=31.3

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA   91 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga   91 (286)
                      +|.+|+||||+|+..|+. ++++|++      .|+++|..|.+|.||||+|..    .++.+++++|+.+|+
T Consensus       207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          207 ANKQGNSHLHWAILINWEDVAMRFVE------MGIDVNMEDNEHTVPLYLSVR----AAMVLLTKELLQKTD  268 (364)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHT------TTCCTTCCCTTSCCHHHHHHH----TCCHHHHHHHHHHSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHH----hChHHHHHHHHHcCC
Confidence            344555555555555555 5555554      255555555555555555543    344455555555544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=98.65  E-value=3.2e-08  Score=92.93  Aligned_cols=64  Identities=17%  Similarity=0.172  Sum_probs=42.9

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|..|+||||+|+..++. ++++|++      .|+++|.+|..|.||||+|..    .++.+++++|+++|++..
T Consensus       307 ~~~~g~t~L~~A~~~g~~~~v~~Ll~------~gad~n~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          307 TTRMGYTPLHVASHYGNIKLVKFLLQ------HQADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             CCSSCCCHHHHHHHSSCSHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHh------cCCCCCCCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCC
Confidence            566677777777776666 7777776      366777777777777777754    456677777777776544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=98.64  E-value=4.7e-08  Score=83.69  Aligned_cols=63  Identities=13%  Similarity=0.136  Sum_probs=35.7

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      +|.+|+||||+|+..++. ++++|++      .++++|..|..|.||||+|..    .++.+++++|++.|++.
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLA------AKCDLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCT
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCC
Confidence            455556666666655555 5555555      255556666666666666643    34455666666555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=98.64  E-value=3.8e-08  Score=84.23  Aligned_cols=62  Identities=24%  Similarity=0.133  Sum_probs=41.1

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|+||||+|+..++. ++++|++      .|+++|..|.+|.||||+|..    .++.+++++|++.|++..
T Consensus       148 ~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          148 KSGRSPLIHAVENNSLSMVQLLLQ------HGANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSS  210 (241)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCCC
Confidence            5567777777776666 7777776      366677777777777777754    345667777777666543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=98.64  E-value=4.7e-08  Score=87.33  Aligned_cols=65  Identities=22%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .++++|.+|.+|.||||+|..    .++.+++++|++.|++..
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~~  119 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLIS------QGWAVNIITADHVSPLHEACL----GGHLSCVKILLKHGAQVN  119 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHH------TTCCSCEECTTCCCHHHHHHH----TTCHHHHHHHHHTTCCSS
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHH----CCcHHHHHHHHHCCCCCC
Confidence            5789999999999999999 9999998      489999999999999999976    568899999999988754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=98.64  E-value=3.1e-08  Score=90.07  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=59.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|++++.+|.+|.||||+|..    .++.+++++|+++|++.+
T Consensus       221 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~------~gad~~~~d~~G~TpL~~A~~----~~~~~iv~~Ll~~ga~~g  286 (301)
T 2b0o_E          221 AKAADGNTALHYAALYNQPDCLKLLLK------GRALVGTVNEAGETALDIARK----KHHKECEELLEQAQAGTF  286 (301)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCCSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCC
Confidence            5789999999999999999 9999999      499999999999999999975    567899999999988744

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=98.63  E-value=3.7e-08  Score=85.83  Aligned_cols=64  Identities=17%  Similarity=0.111  Sum_probs=56.6

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC--------------CCCCCHHHHHhhCCCCCCcHHHHHH
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN--------------HSGVTAFDLLLISPSEAGDREIEEI   85 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N--------------~~G~TaLdiA~~~~~~~~~~ei~~~   85 (286)
                      +|.+|+||||+|+..|+. ++++|+++      |+++|..|              ..|.||||+|+.    .++.+++++
T Consensus        89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~------ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~----~g~~~~v~~  158 (260)
T 3jxi_A           89 VYYRGQTALHIAIERRCKHYVELLVEK------GADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC----TNQPHIVHY  158 (260)
T ss_dssp             SSEESBCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH----TTCHHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhC------CCCcCccccccccCcccccccccCCCCHHHHHHH----cCCHHHHHH
Confidence            456899999999999999 99999994      89999999              689999999976    568899999


Q ss_pred             HHH---cCCCCC
Q 023199           86 LRS---AGATGM   94 (286)
Q Consensus        86 L~~---~Ga~~~   94 (286)
                      |++   .|++..
T Consensus       159 Ll~~~~~ga~~~  170 (260)
T 3jxi_A          159 LTENGHKQADLR  170 (260)
T ss_dssp             HHHCSSCCCCTT
T ss_pred             HHhccccCCCCc
Confidence            999   777654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=98.62  E-value=2.6e-08  Score=86.76  Aligned_cols=66  Identities=20%  Similarity=0.182  Sum_probs=54.7

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHH-------HHHHHHHcCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDRE-------IEEILRSAGATGM   94 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~e-------i~~~L~~~Ga~~~   94 (286)
                      .|+||||+|+..++. ++++|+++.   ..|+++|.+|.+|+||||+|+..  ..++.+       ++++|++.|++..
T Consensus       135 ~g~tpL~~A~~~~~~~~v~~Ll~~~---~~ga~~n~~d~~g~TpLh~A~~~--~~~~~~~~~~~~~iv~~Ll~~ga~~~  208 (256)
T 2etb_A          135 FGELPLSLAACTKQWDVVTYLLENP---HQPASLEATDSLGNTVLHALVMI--ADNSPENSALVIHMYDGLLQMGARLC  208 (256)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCS---SCCCCTTCCCTTSCCHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcc---ccCCCcCccCCCCCCHHHHHHHc--ccCCchhhHHHHHHHHHHHHcCCCcc
Confidence            399999999999999 999999820   02899999999999999999752  234555       9999999998764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=98.61  E-value=5e-08  Score=78.39  Aligned_cols=60  Identities=18%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      .+|.+|+||||+|+..++. ++++|+++      |+++|.+|.+|.||||+|+.    .++.+++++|++.
T Consensus        63 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           63 VQDTSGTSPVHDAARTGFLDTLKVLVEH------GADVNVPDGTGALPIHLAVQ----EGHTAVVSFLAAE  123 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHH----HTCHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHH----hChHHHHHHHHhc
Confidence            5678888999999988888 88888884      78888888888999998865    4577888888876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=98.61  E-value=6.1e-08  Score=85.31  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=57.2

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC--------------CCCCHHHHHhhCCCCCCcHHHHHH
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH--------------SGVTAFDLLLISPSEAGDREIEEI   85 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~--------------~G~TaLdiA~~~~~~~~~~ei~~~   85 (286)
                      +|.+|+||||+|+..|+. ++++|+++      |+++|..|.              .|.||||+|+.    .++.+++++
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~------ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~----~g~~~~v~~  166 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVEN------GADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC----TNQLAIVKF  166 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHH----TTCHHHHHH
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHC------CCCcCccccccccccccccccccCCCCHHHHHHH----cCCHHHHHH
Confidence            567999999999999999 99999994      899999997              79999999976    568899999


Q ss_pred             HHH---cCCCCC
Q 023199           86 LRS---AGATGM   94 (286)
Q Consensus        86 L~~---~Ga~~~   94 (286)
                      |++   .|++..
T Consensus       167 Ll~~~~~gad~~  178 (273)
T 2pnn_A          167 LLQNSWQPADIS  178 (273)
T ss_dssp             HHHCSSCCCCTT
T ss_pred             HHhcccCCCCce
Confidence            999   787654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=98.61  E-value=4.7e-08  Score=94.66  Aligned_cols=65  Identities=12%  Similarity=0.110  Sum_probs=58.4

Q ss_pred             ccCCCChHHHHHHH---hCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           21 YDLSSDYKEQLKTW---IHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        21 kD~~GnTpLHlAa~---~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .|.+|+||||+|+.   .|+. ++++|++      .|+++|.+|.+|+||||+|+.    .++.+++++|+.+||+...
T Consensus       167 ~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~------~ga~vn~~d~~g~TpLh~A~~----~g~~~~v~~Ll~~ga~~~~  235 (497)
T 3lvq_E          167 AQAPEELVLHLAVKVANQASLPLVDFIIQ------NGGHLDAKAADGNTALHYAAL----YNQPDCLKLLLKGRALVGT  235 (497)
T ss_dssp             SCCSCBCHHHHHHHTCCTTTHHHHHHHHH------HSCCTTCCCSSSCCHHHHHTT----TTCHHHHHHHHHTCCCCSC
T ss_pred             cccccchHHHHHHHhcccccHHHHHHHHH------cCCCCCccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            48899999999966   8889 9999999      499999999999999999954    6789999999999998654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=98.60  E-value=3e-08  Score=87.36  Aligned_cols=63  Identities=13%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             cccCCCChHHHHHHHhCc---------H-HHHHHhhCccccccCcccc-------ccCCCCCCHHHHHhhCCCCCCcHHH
Q 023199           20 SYDLSSDYKEQLKTWIHL---------Q-VIELLLGHQANASQGLEVN-------AINHSGVTAFDLLLISPSEAGDREI   82 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~---------~-iv~~LL~~~~~~~~~v~vn-------~~N~~G~TaLdiA~~~~~~~~~~ei   82 (286)
                      .+|.+|+||||+|+..++         . ++++|+++      |+++|       .+|.+|.||||+|..    .++.++
T Consensus       179 ~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~n~~~~~~~~~d~~g~TpL~~A~~----~g~~~i  248 (273)
T 2pnn_A          179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL------GAKLHPTLKLEEITNRKGLTPLALAAS----SGKIGV  248 (273)
T ss_dssp             CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHHHHHH----TTCHHH
T ss_pred             eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh------hhhcccccccccccCCCCCCHHHHHHH----hChHHH
Confidence            478999999999999887         7 89999984      88886       599999999999976    678899


Q ss_pred             HHHHHHcCCC
Q 023199           83 EEILRSAGAT   92 (286)
Q Consensus        83 ~~~L~~~Ga~   92 (286)
                      +++|++.|++
T Consensus       249 v~~Ll~~ga~  258 (273)
T 2pnn_A          249 LAYILQREIH  258 (273)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHCCCC
Confidence            9999999994

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.60  E-value=1.7e-08  Score=86.33  Aligned_cols=65  Identities=18%  Similarity=0.239  Sum_probs=49.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|++++.+|.+|.||||+|.    ..+..++++.|...|+...
T Consensus       135 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~----~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          135 QQNKLGDTALHAAAWKGYADIVQLLLA------KGARTDLRNIEKKLAFDMAT----NAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------HTCCSCCCCTTSCCHHHHCC----SHHHHHHHC----------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCccccCCCCCHHHHhc----chhHHHHHHHHhccchhhh
Confidence            4799999999999999999 9999999      49999999999999999994    3567788888888887554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=98.60  E-value=4.5e-08  Score=79.29  Aligned_cols=64  Identities=22%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ..|..|.||||+|+..|+. ++++|++      .++++|..|..|.||||+|.     .++.+++++|++.|++..
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~-----~~~~~~v~~Ll~~g~~~~   71 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLE------AGANPNAPNSYGRRPIQVMM-----MGSARVAELLLLHGAEPN   71 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHT------TTCCTTCCCSSSCCTTTSSC-----TTCHHHHHHHHTTTCCCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHH-----cCCHHHHHHHHHcCCCCC
Confidence            3578899999999999999 9999998      48999999999999999982     567899999999887654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=98.60  E-value=8e-08  Score=82.12  Aligned_cols=66  Identities=14%  Similarity=0.113  Sum_probs=55.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccc-----cccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEV-----NAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~v-----n~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      .+|.+|+||||+|+..|+. ++++|+++      +.++     +..|.+|.||||+|..    .++.+++++|++.|++.
T Consensus        32 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~  101 (232)
T 2rfa_A           32 QRGAMGETALHIAALYDNLEAAMVLMEA------APELVFEPMTSELYEGQTALHIAVI----NQNVNLVRALLARGASV  101 (232)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHH------CGGGGGCCCCSTTTTTCCHHHHHHH----TTCHHHHHHHHHTTCCT
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHc------CchhccccccccCCCCcCHHHHHHH----cCCHHHHHHHHhCCCCC
Confidence            4688999999999999999 99999984      6655     6778899999999976    56789999999998876


Q ss_pred             CC
Q 023199           94 MR   95 (286)
Q Consensus        94 ~~   95 (286)
                      ..
T Consensus       102 ~~  103 (232)
T 2rfa_A          102 SA  103 (232)
T ss_dssp             TC
T ss_pred             Cc
Confidence            54

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=98.59  E-value=8.1e-08  Score=82.20  Aligned_cols=65  Identities=12%  Similarity=-0.001  Sum_probs=57.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .+++++..|.+|.||||+|..    .++.+++++|++.|+...
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   71 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQ------AGANIDTCSEDQRTPLMEAAE----NNHLEAVKYLIKAGALVD   71 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHH------cCCCcCccCCCCCCHHHHHHH----hCCHHHHHHHHhCCCCCC
Confidence            4688999999999999999 9999998      489999999999999999976    568899999999887654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=98.59  E-value=2.8e-08  Score=84.09  Aligned_cols=70  Identities=10%  Similarity=-0.021  Sum_probs=57.2

Q ss_pred             cccCCCChHHHHHHHhCc------H-HHHHHhhCccccccCccccccCCCCC-CHHHHHhhCCCC-CCcHHHHHHHHH-c
Q 023199           20 SYDLSSDYKEQLKTWIHL------Q-VIELLLGHQANASQGLEVNAINHSGV-TAFDLLLISPSE-AGDREIEEILRS-A   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~------~-iv~~LL~~~~~~~~~v~vn~~N~~G~-TaLdiA~~~~~~-~~~~ei~~~L~~-~   89 (286)
                      .+|.+|+||||+|+..++      . ++++|++      .|+++|.+|+.|. ||||+|...... .+..+++++|+. .
T Consensus        70 ~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~------~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~  143 (186)
T 3t8k_A           70 SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE------KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS  143 (186)
T ss_dssp             CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHH------TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST
T ss_pred             CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHH------CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc
Confidence            579999999999999886      4 7999998      4999999999999 999999762111 124568899999 8


Q ss_pred             CCCCCC
Q 023199           90 GATGMR   95 (286)
Q Consensus        90 Ga~~~~   95 (286)
                      |++...
T Consensus       144 gad~~~  149 (186)
T 3t8k_A          144 GLQLLI  149 (186)
T ss_dssp             TCCTTC
T ss_pred             CCCCcc
Confidence            987654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.59  E-value=5.7e-08  Score=82.56  Aligned_cols=60  Identities=25%  Similarity=0.208  Sum_probs=36.7

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      +|+||||+|+..++. ++++|++      .|++++..|.+|.||||+|..    .++.+++++|+++|+..
T Consensus       176 ~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~----~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          176 HKNTALHWAVLAGNTTVISLLLE------AGANVDAQNIKGESALDLAKQ----RKNVWMINHLQEARQAK  236 (240)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHH------HTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHHC---
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHhhhcc
Confidence            566666666666666 6666666      366666666666666666654    44566666666665543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=98.59  E-value=7.2e-08  Score=82.21  Aligned_cols=65  Identities=25%  Similarity=0.257  Sum_probs=58.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .+.+++..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  100 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAAS----AGXDEIVKALLVKGAHVN  100 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHH------hCCCCCCcCCCCCCHHHHHHH----cCHHHHHHHHHHcCCCCC
Confidence            4689999999999999999 9999998      489999999999999999976    567899999999987654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.58  E-value=4.3e-08  Score=91.04  Aligned_cols=64  Identities=20%  Similarity=0.170  Sum_probs=56.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|.+|..|+||||+|..    .++.+++++|++.|+++
T Consensus       308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~------~gad~~~~d~~g~t~l~~A~~----~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          308 KQDEDGKTPIMLAAQEGRIEVVMYLIQ------QGASVEAVDATDHTARQLAQA----NNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTTC---
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCccc
Confidence            5789999999999999999 9999999      499999999999999999976    67899999999988754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=98.57  E-value=1.3e-07  Score=78.94  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=53.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|++++..|..|.||||+|..    .++.+++++|+..
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~   94 (201)
T 3hra_A           34 EVDTEGNTPLNIAVHNNDIEIAKALID------RGADINLQNSISDSPYLYAGA----QGRTEILAYMLKH   94 (201)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhc
Confidence            4788999999999999999 9999998      499999999999999999976    5678999999844

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=98.57  E-value=4e-08  Score=85.64  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=57.7

Q ss_pred             cccCCCChHHHHHHHhCc---------H-HHHHHhhCccccccCccc-------cccCCCCCCHHHHHhhCCCCCCcHHH
Q 023199           20 SYDLSSDYKEQLKTWIHL---------Q-VIELLLGHQANASQGLEV-------NAINHSGVTAFDLLLISPSEAGDREI   82 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~---------~-iv~~LL~~~~~~~~~v~v-------n~~N~~G~TaLdiA~~~~~~~~~~ei   82 (286)
                      .+|.+|+||||+|+..++         . ++++|+++      |+++       +.+|.+|.||||+|..    .++.++
T Consensus       171 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~  240 (260)
T 3jxi_A          171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK------CAKLFPDTNLEALLNNDGLSPLMMAAK----TGKIGI  240 (260)
T ss_dssp             CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHHHHHH----TTCHHH
T ss_pred             ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh------CcccccccchhhcccCCCCCHHHHHHH----cCCHHH
Confidence            479999999999998887         6 89999984      8888       7899999999999976    678899


Q ss_pred             HHHHHHcCCCCCC
Q 023199           83 EEILRSAGATGMR   95 (286)
Q Consensus        83 ~~~L~~~Ga~~~~   95 (286)
                      +++|+++|+....
T Consensus       241 v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          241 FQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCccc
Confidence            9999999876554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=98.56  E-value=1.1e-07  Score=80.75  Aligned_cols=65  Identities=22%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccC--ccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQG--LEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~--v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .|.+|+||||+|+..++. ++++|+++      +  .+++..|.+|.||||+|..    .++.+++++|++.|++...
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~------g~~~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~~  135 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDR------PLKPDLNKITNQGVTCLHLAVG----KKWFEVSQFLIENGASVRI  135 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSS------SSCCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhC------CCCcccccCCcCCCCHHHHHHH----cCCHhHHHHHHHcCCCccc
Confidence            677788888888888888 88888874      4  7777778888888888764    4567777888877777543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=98.56  E-value=9.3e-08  Score=85.39  Aligned_cols=66  Identities=15%  Similarity=0.090  Sum_probs=59.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .++++|..|.+|.||||+|..    .++.+++++|+..|++...
T Consensus        87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~  153 (285)
T 3d9h_A           87 IITADHVSPLHEACLGGHLSCVKILLK------HGAQVNGVTADWHTPLFNACV----SGSWDCVNLLLQHGASVQP  153 (285)
T ss_dssp             EECTTCCCHHHHHHHTTCHHHHHHHHH------TTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----cCHHHHHHHHHHCCCCCCC
Confidence            5789999999999999999 9999998      489999999999999999976    5678999999999887643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.54  E-value=3.7e-08  Score=85.65  Aligned_cols=68  Identities=19%  Similarity=0.037  Sum_probs=58.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCC-CHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGV-TAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~-TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|+++      |+++|.+|..|. ||||+|..  ...++.+++++|+.+|++...
T Consensus        98 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~t~l~~a~~--~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B           98 AADSDGWTPLHCAASCNNVQVCKFLVES------GAAVFAMTYSDMQTAADKCEE--MEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCSSSCCCHHHHCCS--SSTTCCCHHHHHHHHHHHTTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCcceecCCCCcchHHHHHH--hhhccHHHHHHHHHhhhcccc
Confidence            5789999999999999999 99999994      999999998877 99999842  235678999999999887653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=98.53  E-value=8.5e-08  Score=83.68  Aligned_cols=66  Identities=18%  Similarity=0.093  Sum_probs=38.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|+++     ...+++..|.+|.||||+|..    .++.+++++|+..|++..
T Consensus        85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  151 (253)
T 1yyh_A           85 IQDNMGRTPLHAAVSADAQGVFQILIRN-----RATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVN  151 (253)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHS-----TTSCTTCCCTTCCCHHHHHHH----HTCSSHHHHHHHTTCCTT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHc-----CCCCccccCCCCCcHHHHHHH----cChHHHHHHHHHcCCCCC
Confidence            3456666666666666666 66666664     233566666666666666643    234455566665555543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.53  E-value=1e-07  Score=89.45  Aligned_cols=63  Identities=19%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.||||+|+..++. ++++|+++      ++++|..|..|+||||+|..    .++.+++++|+.+|++...
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~------Gadvn~~d~~G~TpLh~A~~----~g~~~~v~~LL~~Gad~~~  296 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQN------GANVNQADSAGRGPLHHATI----LGHTGLACLFLKRGADLGA  296 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHH----cCcHHHHHHHHHCcCCCCC
Confidence            8899999999999999 99999984      99999999999999999975    5678999999999987643

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.53  E-value=8.5e-08  Score=90.04  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|+++      |+++|.+|.+|.||||+|..    .++.+++++|+.+|....
T Consensus       263 ~~d~~G~TpLh~A~~~g~~~~v~~LL~~------Gad~~~~d~~G~TpL~~A~~----~g~~~iv~lLl~~~~~~~  328 (368)
T 3jue_A          263 QADSAGRGPLHHATILGHTGLACLFLKR------GADLGARDSEGRDPLTIAME----TANADIVTLLRLAKMREA  328 (368)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHC---
T ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHHC------cCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCcc
Confidence            5789999999999999999 99999994      99999999999999999975    568899999998886544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.51  E-value=1.1e-07  Score=87.11  Aligned_cols=63  Identities=11%  Similarity=0.073  Sum_probs=40.6

Q ss_pred             cccCCCChHHHHHHHhC--cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           20 SYDLSSDYKEQLKTWIH--LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~--~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      .+|.+|+||||+|+..|  +. ++++|++      .|+++|..|..|.||||+|..    .++.+++++|+..|++
T Consensus       133 ~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~------~ga~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          133 VKHCKGQTALHWCVGLGPEYLEMIKILVQ------LGASPTAKDKADETPLMRAME----FRNREALDLMMDTVPS  198 (364)
T ss_dssp             EEEESCCCHHHHHHHSCGGGHHHHHHHHH------HTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHCSC
T ss_pred             cCCCCCCCHHHHHHHcCCchHHHHHHHHH------cCCCCcccCCCCCCHHHHHHH----cCCHHHHHHHHhcccc
Confidence            35666666666666666  66 6666666      366666666666666666654    4456666666666655

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=98.49  E-value=1.6e-07  Score=81.73  Aligned_cols=66  Identities=17%  Similarity=0.083  Sum_probs=59.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ..+.+|.||||.|+..|+. ++++|++      .++++|..|.+|.||||+|+.    .++.+++++|++.|++...
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~ga~~n~   82 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVK------EMNDPSQPNEEGITALHNAIC----GANYSIVDFLITAGANVNS   82 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHH------HSSCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            4678899999999999999 9999998      489999999999999999976    5688999999999987653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=98.49  E-value=6.5e-08  Score=80.54  Aligned_cols=63  Identities=19%  Similarity=0.117  Sum_probs=56.5

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .|.+|+||||+|+..|+. ++++|++       +.++|.+|.+|.||||+|..    .++.+++++|++.|++..
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-------~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  103 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-------DRDVDAVDENGRTALLFVAG----LGSDKCVRLLAEAGADLD  103 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-------TSCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-------cCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            467899999999999999 9999996       67899999999999999976    567899999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=98.49  E-value=1.2e-07  Score=84.50  Aligned_cols=65  Identities=18%  Similarity=0.163  Sum_probs=47.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++.      +++++..+.+|.||++.|..    .++.++.++|+..|++..
T Consensus        81 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~------~a~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~g~~~n  146 (269)
T 4b93_B           81 VTSQDGSSPLHVAALHGRADLIPLLLKH------GANAGARNADQAVPLHLACQ----QGHFQVVKCLLDSNAKPN  146 (269)
T ss_dssp             CCCTTSCCHHHHHHHTTCTTHHHHHHHT------TCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSC
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHhc------CCCcCccCCCCCCccccccc----cChHHHHHHHHHCCCCCC
Confidence            4788999999999999999 99999884      66666667777777776643    345566666666666554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.49  E-value=2e-07  Score=83.37  Aligned_cols=64  Identities=16%  Similarity=0.086  Sum_probs=55.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..|+. ++++|+++      ++++|..|  |.||||+|..    .++.+++++|++.|++...
T Consensus        26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~------g~~~~~~~--g~t~L~~A~~----~g~~~~v~~Ll~~ga~~~~   90 (285)
T 3kea_A           26 KADVHGHSASYYAIADNNVRLVCTLLNA------GALKNLLE--NEFPLHQAAT----LEDTKIVKILLFSGLDDSQ   90 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT------TGGGSCCT--TCCHHHHHTT----SSSCHHHHHHHHTTCCTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhC------CCCCCCCC--CCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            5899999999999999999 99999984      88888884  9999999954    6678999999999987553

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.48  E-value=2.2e-07  Score=80.83  Aligned_cols=65  Identities=23%  Similarity=0.234  Sum_probs=55.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ..|..|+||||+|+..|+. ++++|++      .+.+++..|.+|.||||+|..    .++.+++++|++.|++..
T Consensus        34 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~   99 (285)
T 1wdy_A           34 QEEEGGWTPLHNAVQMSREDIVELLLR------HGADPVLRKKNGATPFLLAAI----AGSVKLLKLFLSKGADVN   99 (285)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            3478899999999999999 9999998      488899999999999999975    567889999999887654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.45  E-value=2.1e-07  Score=83.20  Aligned_cols=61  Identities=15%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|+||||+|+..|+. ++++|++      .|+++|..|..|.||||+|..    .++.+++++|++.|++..
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~~  122 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLF------SGLDDSQFDDKGNTALYYAVD----SGNMQTVKLFVKKNWRLM  122 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHCGGGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCcHHHHHHH----cCCHHHHHHHHhcCCCCC
Confidence            466666666666666 6666666      366666666666666666654    345566666666666544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=98.45  E-value=1.2e-07  Score=86.53  Aligned_cols=60  Identities=15%  Similarity=0.002  Sum_probs=50.3

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCc---HHHHHHHHHcC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGD---REIEEILRSAG   90 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~---~ei~~~L~~~G   90 (286)
                      +|.+|+||||+|+..|+. ++++|+++      |+++|.+|.+|+||||+|+.    .++   .++++.|++.+
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~------Gad~n~~d~~g~TpLh~A~~----~g~~~~~~~~~~ll~~~  190 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKH------GSNRLYGDNMGESCLVKAVK----SVNNYDSGTFEALLDYL  190 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTBCCTTCCCHHHHHHH----SSHHHHTTCHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHH----hcccccHHHHHHHHHhh
Confidence            799999999999999999 99999994      99999999999999999976    333   34445555544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=98.42  E-value=2e-07  Score=85.04  Aligned_cols=72  Identities=15%  Similarity=0.046  Sum_probs=56.1

Q ss_pred             cccCCCChHHHHHHH----hCcH-HHHHHhhCcccc--------------ccCc-------------------------c
Q 023199           20 SYDLSSDYKEQLKTW----IHLQ-VIELLLGHQANA--------------SQGL-------------------------E   55 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~----~~~~-iv~~LL~~~~~~--------------~~~v-------------------------~   55 (286)
                      .+|.+|+||||+|+.    .++. ++++|++....-              ..++                         +
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~  275 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  275 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhC
Confidence            578999999999998    7888 999998641000              0011                         5


Q ss_pred             ccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           56 VNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        56 vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +|.+|.+|+||||+|+.    .++.+++++|+++|++...
T Consensus       276 ~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~~~  311 (327)
T 1sw6_A          276 LNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPFI  311 (327)
T ss_dssp             TTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            88899999999999976    5688999999999987653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=98.41  E-value=9.4e-08  Score=83.63  Aligned_cols=64  Identities=19%  Similarity=0.118  Sum_probs=56.8

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+.+|+||||+|+..|+. ++++|++       +.++|.+|.+|.||||+|..    .++.+++++|+..|++...
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-------~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~~~  105 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-------DRDVDAVDENGRTALLFVAG----LGSDKCVRLLAEAGADLDH  105 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-------TCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-------CCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCCCc
Confidence            456899999999999999 9999996       67899999999999999976    5788999999999987653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=98.40  E-value=3e-07  Score=86.20  Aligned_cols=64  Identities=16%  Similarity=0.138  Sum_probs=45.8

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|.+|+||||+|+..|+. ++++|++      .+.++|.+|.+|.||||+|..    .++.+++++|++.|++..
T Consensus        43 ~~~~~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~~  107 (437)
T 1n11_A           43 SNVKVETPLHMAARAGHTEVAKYLLQ------NKAKVNAKAKDDQTPLHCAAR----IGHTNMVKLLLENNANPN  107 (437)
T ss_dssp             SSSCCCCHHHHHHHHTCHHHHHHHHH------HTCCSSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHTCCTT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCCCCCCCCCHHHHHHH----CCCHHHHHHHHhCCCCCC
Confidence            566777777777777777 7777776      367777777777777777754    456677777777776644

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.27  E-value=1.7e-06  Score=73.24  Aligned_cols=64  Identities=13%  Similarity=0.057  Sum_probs=38.9

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|.+|+||||+|+..++. ++++|+++      +.+++..+ ..|.||||+|..    .++.+++++|++.|+...
T Consensus        38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~------~~~~~~~~~~~~~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  103 (240)
T 3eu9_A           38 PDKENVTLLHWAAINNRIDLVKYYISK------GAIVDQLGGDLNSTPLHWATR----QGHLSMVVQLMKYGADPS  103 (240)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCBTTTTBCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHHHc------CCcchhhcCCcCCChhHHHHH----cCCHHHHHHHHHcCCCCc
Confidence            566667777777766666 66766663      45554333 336666666654    345566666666666544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=97.72  E-value=6.7e-06  Score=77.23  Aligned_cols=60  Identities=15%  Similarity=-0.002  Sum_probs=32.7

Q ss_pred             cCCCChHHHHHHHhCcH-HHHHHhhCccccccCcc---ccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           22 DLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLE---VNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        22 D~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~---vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      |.+|+||||+|+..|+. ++++|+++      +++   .+..+.+ .||||+|+.    .++.+++++|++.|++
T Consensus       125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~------gad~~~~~i~~~~-~TpLh~Aa~----~G~~eiv~~Ll~~ga~  188 (376)
T 2aja_A          125 QAENYQAFRLAAENGHLHVLNRLCEL------APTEIMAMIQAEN-YHAFRLAAE----NGHLHVLNRLCELAPT  188 (376)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHS------CTTTHHHHHSHHH-HHHHHHHHH----TTCHHHHHHHHHSCGG
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhC------CCCccccccCCCC-CCHHHHHHH----CCCHHHHHHHHHcCCc
Confidence            34456666666666666 66666664      322   1221222 566666643    4455666666666655

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=97.71  E-value=6e-06  Score=77.57  Aligned_cols=63  Identities=16%  Similarity=0.053  Sum_probs=45.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCc---cccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGL---EVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT   92 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v---~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~   92 (286)
                      .++.+++||||+|+..|+. ++++|+++      +.   ..+..|..|.||||+|+.    .++.+++++|++.|++
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~------ga~~~~~~~~~~~~~tpL~~Aa~----~G~~eiv~~Ll~~gad  153 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLL------LTSDEIVKVIQAENYQAFRLAAE----NGHLHVLNRLCELAPT  153 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--------CCSSCC--CHHHHHHHHHHHH----TTCHHHHHHHHHSCTT
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHc------CCcHHHHHHhccCCCCHHHHHHH----cCCHHHHHHHHhCCCC
Confidence            5677788888888888888 88888875      33   223455667788888865    6678888888888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.003

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 8e-05
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 10/63 (15%)

Query: 34  WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG 93
                V+ELLL   A+        A  + G T             +  +  +LR+ GA  
Sbjct: 202 AQAASVLELLLKAGAD------PTARMYGGRTPLGS----ALLRPNPILARLLRAHGAPE 251

Query: 94  MRD 96
             D
Sbjct: 252 PED 254

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 12/58 (20%)

Query: 34  WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
             H     LL+        G E + +++ G  A D+       A + ++++   +   
Sbjct: 182 EGHGDAAVLLV-----EKYGAEYDLVDNKGAKAEDV-------ALNEQVKKFFLNNVV 227

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 36  HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
           HL +++ LL  +      +E+N  +  G TA    L+   E   ++I E+L   GA
Sbjct: 231 HLGLVQRLLEQE-----HIEINDTDSDGKTA----LLLAVELKLKKIAELLCKRGA 277

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.09
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.04
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.03
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.01
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	98.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	98.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	98.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	98.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	98.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.85
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	98.83
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	98.72
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	98.71
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.71
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.69
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.69
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.61
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	98.61
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.6
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.52
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	98.48
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	98.47
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	98.47
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.47
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	98.47
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	98.39
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	98.32
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.3
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.12
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	97.96

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5e-11  Score=93.45  Aligned_cols=66  Identities=15%  Similarity=0.148  Sum_probs=60.2

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .++++|..|.+|+||||+|..    .++.+++++|+++|++...
T Consensus        29 ~~d~~g~t~Lh~A~~~~~~~~~~~ll~------~g~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          29 LPNDEGITALHNAVCAGHTEIVKFLVQ------FGVNVNAADSDGWTPLHCAAS----CNNVQVCKFLVESGAAVFA   95 (130)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH------HTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccccccccccccccccccccccc------cccccccccccCcccccccch----hhHHHHHHHHHHcCCCccc
Confidence            4899999999999999999 9999998      489999999999999999975    6788999999999987653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=5.1e-11  Score=96.73  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=28.7

Q ss_pred             cCCCChHHHHHHHh---CcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           22 DLSSDYKEQLKTWI---HLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        22 D~~GnTpLHlAa~~---~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      |..|+||||+|+..   +.. ++++|++      .|+++|.+|.+|+||||+|+.    .++.+++++|++.|++.
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~------~gadin~~d~~g~TpLh~A~~----~~~~~~v~~Ll~~gad~  107 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQ------NSGNLDKQTGKGSTALHYCCL----TDNAECLKLLLRGKASI  107 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHH------HCSCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCT
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHH------cCCChhhhhhhhccccccccc----cccccccccccccCccc
Confidence            34445555555542   233 4444544      244455555555555555533    33444555555544443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=9.4e-11  Score=90.33  Aligned_cols=66  Identities=18%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|+++|.+|.+|+||||+|+.    .++.+++++|++.|++...
T Consensus        30 ~~~~~g~t~lh~A~~~~~~~~~~~ll~------~g~din~~d~~g~tpLh~A~~----~~~~~~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          30 RTLEGGRKPLHYAADCGQLEILEFLLL------KGADINAPDKHHITPLLSAVY----EGHVSCVKLLLSKGADKTV   96 (118)
T ss_dssp             CCSSSSCCTTHHHHHHSTTTHHHHHHH------SSCTTTCCSSSCSCHHHHHHT----TTCCHHHHHHHTTCCCSSS
T ss_pred             ccccccccccccccccccccccccccc------ccceeeecccccccchhhhhh----cCchhhhhhhhccccccee
Confidence            4789999999999999999 9999998      499999999999999999975    5678999999999987653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1.9e-10  Score=97.84  Aligned_cols=64  Identities=23%  Similarity=0.239  Sum_probs=53.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      .+|..|+||||+|++.++. ++++|+++      |+++|.+|++|+||||+|..    .++.+++++|+++||+.
T Consensus       187 ~~~~~g~TpL~~A~~~~~~~~v~~Ll~~------gadin~~d~~g~t~L~~A~~----~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         187 PEPTCGRTPLHLAVEAQAASVLELLLKA------GADPTARMYGGRTPLGSALL----RPNPILARLLRAHGAPE  251 (255)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHT----SSCHHHHHHHHHTTCCC
T ss_pred             cccccccccccccccccHHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCC
Confidence            3567789999999998888 99999884      88899999999999999864    56788999999999863

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.3e-10  Score=98.35  Aligned_cols=66  Identities=21%  Similarity=0.182  Sum_probs=60.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||.|+..++. ++++|+++     .++++|.+|.+|+||||+|..    .++.+++++|+++||+..
T Consensus       214 ~~~~~g~t~L~~a~~~~~~~~v~~lL~~-----~g~din~~d~~G~TpL~~A~~----~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         214 VRGERGKTPLILAVEKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHS-----SSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSC
T ss_pred             ccCCCCCCccchhhhcCcHHHHHHHHHc-----CCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            4789999999999999999 99999986     689999999999999999976    678999999999999865

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.5e-10  Score=92.82  Aligned_cols=67  Identities=19%  Similarity=0.174  Sum_probs=56.5

Q ss_pred             CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ++|+||||+||.+|+. +++.|++.  ....++++|.+|.+|+||||+|..    .++.++++.|++.|+....
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~--~~~~g~~in~~d~~g~TpL~~A~~----~~~~~iv~~Ll~~ga~~~~   68 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNL--FQQGGRELDIYNNLRQTPLHLAVI----TTLPSVVRLLVTAGASPMA   68 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHH--HHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHH--HHHCCCCCCccCCCCCccceehhc----ccccccccccccccccccc
Confidence            4799999999999999 99988752  011589999999999999999976    5688999999999987654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=5.3e-10  Score=88.08  Aligned_cols=57  Identities=30%  Similarity=0.360  Sum_probs=52.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEIL   86 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L   86 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|.+|++|.||||+|..    .++.|++++|
T Consensus        95 ~~~~~g~T~L~~A~~~g~~~iv~~ll~------~gad~~~~d~~g~Tpl~~A~~----~g~~eiv~lL  152 (153)
T d1awcb_          95 AKDMLKMTALHWATEHNHQEVVELLIK------YGADVHTQSKFCKTAFDISID----NGNEDLAEIL  152 (153)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             cccccCchHHHhhhhcchhheeeeccc------cccCCcccCCCCCCHHHHHHH----cCCHHHHHhC
Confidence            5799999999999999999 9999998      499999999999999999975    6788998877

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=4.6e-10  Score=95.38  Aligned_cols=65  Identities=26%  Similarity=0.297  Sum_probs=55.0

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCcc---ccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLE---VNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~---vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .|++|+||||+||++++. ++++|+++      +++   +|.+|++|+||||+|+.    .++.+++++|++.|++...
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~------~a~~~~i~~~~~~g~TpL~~A~~----~g~~~iv~~Ll~~ga~i~~   73 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGF------SAGHEYLDLQNDLGQTALHLAAI----LGEASTVEKLYAAGAGVLV   73 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH------HTTSGGGGCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHc------CCCcccccCcCCCCCCccchHHh----hcccccccccccccccccc
Confidence            478999999999999999 99999985      444   77888999999999976    5678999999999987653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=6.4e-10  Score=91.63  Aligned_cols=57  Identities=14%  Similarity=-0.003  Sum_probs=52.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEIL   86 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L   86 (286)
                      .+|.+|+||||+|+..|+. ++++|+++      |+++|.+|++|+||||+|..    .++.+++++|
T Consensus       151 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~------gad~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         151 AQDDKDETPLFLAAREGSYEASKALLDN------FANREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             ccccccccccchhccccHHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence            4789999999999999999 99999984      99999999999999999976    5788998876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=3.3e-10  Score=94.76  Aligned_cols=66  Identities=23%  Similarity=0.122  Sum_probs=47.0

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH-cCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRS-AGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~-~Ga~~~   94 (286)
                      .+|.+|+||||+|+..++. ++++|++.     ...++|.+|.+|+||||+|+.    .++.+++++|++ .|++..
T Consensus       133 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-----~~~~in~~d~~g~TpLh~A~~----~~~~~~v~~Ll~~~gad~~  200 (229)
T d1ixva_         133 IKDKFNQIPLHRAASVGSLKLIELLCGL-----GKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYD  200 (229)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHTT-----TCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSC
T ss_pred             ccCCCCCCccchhhhccccccccccccc-----ccccccccccccCCchhhhcc----cccHHHHHHHHHhcCCCCC
Confidence            3677777888888877777 77777775     346677777778888887765    456677777764 576654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.87  E-value=4.1e-10  Score=96.39  Aligned_cols=70  Identities=23%  Similarity=0.159  Sum_probs=56.6

Q ss_pred             cCCCChHHHHHHHhCcH-HHHHHhhCcc--ccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           22 DLSSDYKEQLKTWIHLQ-VIELLLGHQA--NASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        22 D~~GnTpLHlAa~~~~~-iv~~LL~~~~--~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      +++|+||||+||..|+. ++++|+.+..  .-..|+|+|.+|++|+||||+|..    .++.+++++|++.|++...
T Consensus        30 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~Gad~n~  102 (277)
T d2fo1e1          30 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL----ARRRRLVAYLMKAGADPTI  102 (277)
T ss_dssp             CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccc----ccccccccccccccccccc
Confidence            35699999999999998 8887754311  001489999999999999999975    5688999999999997653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.9e-09  Score=87.24  Aligned_cols=65  Identities=18%  Similarity=0.136  Sum_probs=58.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+++|.+|++|+||||+|..    .++.+++++|.++++..-
T Consensus        76 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~----~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          76 KQTGKGSTALHYCCLTDNAECLKLLLR------GKASIEIANESGETPLDIAKR----LKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTCC
T ss_pred             hhhhhhccccccccccccccccccccc------cCccccccCCCCCCHHHHHHH----cCCHHHHHHHHHhCCCCC
Confidence            5899999999999999999 9999998      499999999999999999975    678899999999876543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.7e-09  Score=86.19  Aligned_cols=59  Identities=19%  Similarity=0.267  Sum_probs=49.7

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      .+|.+|+||||+|+..|+. ++++|+.       +++++.+|.+|+||||+|..    .++.+++++|+++
T Consensus        96 ~~~~~~~t~L~~A~~~~~~~i~~~L~~-------~~~~~~~d~~G~TpL~~A~~----~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          96 VPDGTGALPIHLAVQEGHTAVVSFLAA-------ESDLHRRDARGLTPLELALQ----RGAQDLVDILQGH  155 (156)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHT-------TSCTTCCCTTSCCHHHHHHH----SCCHHHHHHHHTT
T ss_pred             cccCCCCeeeccccccccccccccccc-------cccccccCCCCCCHHHHHHH----cCCHHHHHHHHhh
Confidence            3688899999999999999 8888874       67889999999999999965    6678899988864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.4e-09  Score=97.92  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA   89 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~   89 (286)
                      .+|.+|+||||+|++.|+. ++++|+++      |+++|++|++|+||||+|..    .++.+++++|...
T Consensus       325 ~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~------GAd~n~~d~~G~t~L~~A~~----~~~~~iv~~L~~~  385 (408)
T d1n11a_         325 AKTKLGYSPLHQAAQQGHTDIVTLLLKN------GASPNEVSSDGTTPLAIAKR----LGYISVTDVLKVV  385 (408)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCSCCCCSSSCCHHHHHHH----TTCHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHH
Confidence            5899999999999999999 99999994      99999999999999999976    5677888877654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.83  E-value=2e-09  Score=91.96  Aligned_cols=59  Identities=22%  Similarity=0.191  Sum_probs=53.8

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRS   88 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~   88 (286)
                      .+|..|+||||+|++.|+. ++++|++      .|+++|.+|++|+||||+|..    .++.+++++|.+
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~iv~~Ll~------~gadin~~d~~G~T~L~~A~~----~~~~~iv~lL~~  275 (277)
T d2fo1e1         216 KQDEDGKTPIMLAAQEGRIEVVMYLIQ------QGASVEAVDATDHTARQLAQA----NNHHNIVDIFDR  275 (277)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH------CcCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHH
Confidence            5799999999999999999 9999998      499999999999999999976    567899999875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.8e-09  Score=88.46  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=55.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      ..|.+|+||||+|++.|+. ++++|+++      |+|+|.+|.+|+||||+|..    .++.++.++|.+.+.+...
T Consensus       140 ~~~~~G~T~L~~A~~~g~~~~v~~Ll~~------gad~~~~~~~G~tpl~~A~~----~~~~~~~~~l~~~~~~~~~  206 (221)
T d1iknd_         140 QEPCNGRTALHLAVDLQNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLENLQ  206 (221)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGGGS
T ss_pred             ccccCCCCccccccccccHHHHHHHHhc------CCcccccCCCCCCHHHHHHH----CCCHHHHHHHHHcCCcccc
Confidence            3567899999999999999 99999984      89999999999999999953    5678999999987765443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.3e-09  Score=81.40  Aligned_cols=58  Identities=17%  Similarity=0.159  Sum_probs=34.6

Q ss_pred             ccCCCC-hHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199           21 YDLSSD-YKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRS   88 (286)
Q Consensus        21 kD~~Gn-TpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~   88 (286)
                      +|.+|. ||||+|++.|+. ++++|++      .|+++|.+|++|+||||+|..    .++.+++++|++
T Consensus        64 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~------~ga~~~~~d~~G~T~l~~A~~----~g~~~~v~~Lls  123 (125)
T d1bi7b_          64 ADPATLTRPVHDAAREGFLDTLVVLHR------AGARLDVRDAWGRLPVDLAEE----LGHRDVARYLRA  123 (125)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHH------HTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccc------cccccccccCCCCCHHHHHHH----cCCHHHHHHHHh
Confidence            344433 466666666666 6666666      366666666666666666643    445566666543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.3e-09  Score=88.01  Aligned_cols=66  Identities=20%  Similarity=0.060  Sum_probs=51.3

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|.||||+|+..++. .+++|++      .+.++|.+|.+|+||||+|+.    .++.+++++|++.|++...
T Consensus       131 ~~~~~~~t~L~~a~~~~~~~~~~~L~~------~~~~i~~~d~~g~TpL~~Aa~----~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         131 AKDHYEATAMHRAAAKGNLKMIHILLY------YKASTNIQDTEGNTPLHLACD----EERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             CcCCCCCccchhhhhcCCcchhhhhcc------ccceeeeccCCCCceeccccc----cCcHHHHHHHHHCCCCCCC
Confidence            4677888888888888888 8888777      477888888888888888865    4567888888888877653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=7.2e-09  Score=86.32  Aligned_cols=60  Identities=13%  Similarity=0.026  Sum_probs=52.4

Q ss_pred             ChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           26 DYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        26 nTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      |||||.||..|+. .++.|++.     .+.+++.+|.+|+||||+|+.    .++.+++++|++.|++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~-----~~~~~~~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~ga~~~   61 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVS----FQAHEITSFLLSKMENVN   61 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH-----CGGGTTCCCTTSCCHHHHHHH----TTCHHHHHHHHTTCTTCC
T ss_pred             CHhHHHHHHcCCHHHHHHHHHc-----CCCcccccCCCCCCHHHHHHH----cCCccccchhhhhhcccc
Confidence            7999999999999 99988875     578899999999999999976    567899999999887653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7.8e-09  Score=81.37  Aligned_cols=58  Identities=26%  Similarity=0.178  Sum_probs=52.0

Q ss_pred             CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      | +|||.||..|+. ++++|++      .|+++|.+|.+|+||||+|.     .++.+++++|++.|++..
T Consensus         2 ~-~~Lh~Aa~~g~~~~v~~Ll~------~g~d~n~~d~~g~TpL~~A~-----~~~~ei~~~Ll~~~a~~~   60 (156)
T d1ihba_           2 G-NELASAAARGDLEQLTSLLQ------NNVNVNAQNGFGRTALQVMK-----LGNPEIARRLLLRGANPD   60 (156)
T ss_dssp             H-HHHHHHHHHTCHHHHHHHTT------SCCCTTCCCTTSCCHHHHCC-----SSCHHHHHHHHHTTCCTT
T ss_pred             h-HHHHHHHHcCCHHHHHHHHH------CCCCcCccCCcccccccccc-----cccccccccccccccccc
Confidence            5 899999999999 9999999      49999999999999999883     357899999999998654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=3.7e-09  Score=93.35  Aligned_cols=46  Identities=20%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHh
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLL   71 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~   71 (286)
                      .+|.+|+||||+|++.|+. ++++|++      .|+++|++|++|+||||+|+
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~------~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLD------YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHH------TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHcC
Confidence            4799999999999999999 9999998      49999999999999999984

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.3e-09  Score=85.20  Aligned_cols=46  Identities=13%  Similarity=0.023  Sum_probs=43.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHh
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLL   71 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~   71 (286)
                      .+|.+|+||||+|+..|+. ++++|++      .|+|+|.+|.+|+||||+|.
T Consensus       172 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         172 AQMYSGSSALHSASGRGLLPLVRTLVR------SGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCTTTTCS
T ss_pred             cccccCcchHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHH
Confidence            5789999999999999999 9999998      49999999999999999995

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=7e-09  Score=80.83  Aligned_cols=63  Identities=19%  Similarity=0.047  Sum_probs=53.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      .+|.+|+||||+|+.+|+. ++++|++      .|+++|..|. +|.||++++..  ...++.+++++|+..+
T Consensus        62 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~------~ga~v~~~~~~~~~~~~~~~~a--~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          62 AADSDGWTPLHCAASCNNVQVCKFLVE------SGAAVFAMTYSDMQTAADKCEE--MEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCSSSCCCHHHHCCS--SSTTCCCHHHHHHHHH
T ss_pred             cccccCcccccccchhhHHHHHHHHHH------cCCCcccccCCCCCCHHHHHHH--HHcChHHHHHHHHhHH
Confidence            5799999999999999999 9999999      4999998874 69999998854  3356778999998754

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.8e-08  Score=84.24  Aligned_cols=66  Identities=18%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|++++..|.+|.|||+.+..    .+..++.+.|...+.....
T Consensus        34 ~~d~~g~TpLh~A~~~~~~~iv~~L~~------~g~d~~~~d~~g~t~l~~~~~----~~~~~~~~~l~~~~~~~~~  100 (221)
T d1iknd_          34 FQNNLQQTPLHLAVITNQPEIAEALLG------AGCDPELRDFRGNTPLHLACE----QGCLASVGVLTQSCTTPHL  100 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHCCCS------CCCCSCCCCTTCCCHHHHHHH----HTCHHHHHHHHHSTTTTSS
T ss_pred             cCCCCCCcccccccccccccccccccc------ccccccccccccccccccccc----cccccccchhhhhcccccc
Confidence            4799999999999999999 9999998      599999999999999999965    4567899999988765443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.61  E-value=3.3e-08  Score=85.18  Aligned_cols=65  Identities=18%  Similarity=0.086  Sum_probs=59.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      ..+.+|.||||.|+..++. ++++|++      .|+++|.+|.+|.||||+|..    .++.+++++|+++|++..
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~------~g~din~~~~~g~TpL~~A~~----~g~~~iv~lLl~~Gadv~  259 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQ------ARYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDME  259 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             cccCCCCChhhHHHHcCChhhhccccc------ceecccccccCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            4678999999999999999 9999998      489999999999999999976    678899999999999764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.8e-08  Score=90.49  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=55.1

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      .+|..|+||||+|+..|+. ++++|+++      |+++|.+|.+|+|||++|..    .++.++.+.|+..+......
T Consensus        28 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~------gadi~~~~~~g~t~L~~A~~----~g~~~~~~~Ll~~~~~~~~~   95 (408)
T d1n11a_          28 VSNVKVETPLHMAARAGHTEVAKYLLQN------KAKVNAKAKDDQTPLHCAAR----IGHTNMVKLLLENNANPNLA   95 (408)
T ss_dssp             CSSSCCCCHHHHHHHHTCHHHHHHHHHH------TCCSSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHTCCTTCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHC------cCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHhhhccccc
Confidence            4788899999999999999 99999984      88999999999999999865    55778888888777655443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.1e-08  Score=77.76  Aligned_cols=62  Identities=27%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG   90 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G   90 (286)
                      ..|..|.+|||+|+..++. .+++|+++     .+.+.+.+|++|+||||+|..    .++.+++++|+++|
T Consensus        94 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-----~~~~~~~~d~~g~TpL~~A~~----~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          94 IEDNEGNLPLHLAAKEGHLRVVEFLVKH-----TASNVGHRNHKGDTACDLARL----YGRNEVVSLMQANG  156 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHH-----SCCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccc-----ccccccccCCCCCCHHHHHHH----cCCHHHHHHHHhcC
Confidence            4688999999999999999 99999986     456899999999999999976    56889999999887

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=3.5e-08  Score=86.91  Aligned_cols=47  Identities=13%  Similarity=0.020  Sum_probs=43.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI   72 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~   72 (286)
                      ..|.+|+||||+||..|+. ++++|++      .|++++.+|+.|+||||.|+.
T Consensus       102 ~~D~~G~T~LH~Aa~~g~~~~v~~Ll~------~gad~~~~d~~G~TpL~~A~~  149 (301)
T d1sw6a_         102 PVDEHGNTPLHWLTSIANLELVKHLVK------HGSNRLYGDNMGESCLVKAVK  149 (301)
T ss_dssp             CCSTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTBCCTTCCCHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCcCCcccccHHHHhhh
Confidence            3489999999999999999 9999998      499999999999999999976

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=5.2e-08  Score=74.38  Aligned_cols=59  Identities=20%  Similarity=0.080  Sum_probs=52.9

Q ss_pred             ChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           26 DYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        26 nTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      +|||++|++.|+. ++++|++      .|+++|.+|.+|+||||+|..    .++.++.++|+..|++..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~------~g~d~n~~~~~g~t~lh~A~~----~~~~~~~~~ll~~g~din   62 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA------KGEDVNRTLEGGRKPLHYAAD----CGQLEILEFLLLKGADIN   62 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT------TTCCCCCCSSSSCCTTHHHHH----HSTTTHHHHHHHSSCTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHH------hhhcccccccccccccccccc----ccccccccccccccceee
Confidence            5899999999999 9999998      489999999999999999976    456789999999988654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.4e-07  Score=78.99  Aligned_cols=66  Identities=17%  Similarity=0.101  Sum_probs=58.9

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+|.+|+||||+|+..++. ++++|++      .|++++.+|..|.||||.+..    .++.++.++|...|.+...
T Consensus        98 ~~d~~g~tpL~~A~~~~~~e~~~~Ll~------~g~d~~~~~~~~~t~L~~a~~----~~~~~~~~~L~~~~~~i~~  164 (223)
T d1uoha_          98 AVNQNGCTPLHYAASKNRHEIAVMLLE------GGANPDAKDHYEATAMHRAAA----KGNLKMIHILLYYKASTNI  164 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             eeCCCCCchhhHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCccchhhhh----cCCcchhhhhccccceeee
Confidence            5799999999999999999 9999998      489999999999999999975    5677889999999887653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.47  E-value=5.7e-08  Score=83.63  Aligned_cols=65  Identities=18%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+.+|.|+||.||..|+. +|++|++      .|+++|.+|++|.||||+|..    .++.+++++|++.|++...
T Consensus        36 ~~~~~~t~l~~A~~~G~~~~v~~Ll~------~Gadvn~~d~~G~T~L~~A~~----~g~~eiv~~Ll~~~~~~~~  101 (291)
T d1s70b_          36 VKFDDGAVFLAACSSGDTEEVLRLLE------RGADINYANVDGLTALHQACI----DDNVDMVKFLVENGANINQ  101 (291)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHH------HCCCTTCBCTTCCBHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHH------CCCCCCccCCCCCcHHHHHHh----cCCceeeeeeccccccccc
Confidence            356788999999999999 9999998      599999999999999999976    6688999999999876543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.47  E-value=8.2e-09  Score=93.32  Aligned_cols=64  Identities=14%  Similarity=-0.040  Sum_probs=47.4

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC--CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN--HSGVTAFDLLLISPSEAGDREIEEILRSAGATG   93 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N--~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~   93 (286)
                      .+|.+|+||||+||..|+. +|++|+++      |.+++..+  .+|.||||+|+.    .++.+++++|++.|+..
T Consensus       121 ~~~~~g~taL~~Aa~~G~~~~v~~Ll~~------g~~~~~~~~~~~g~t~L~~Aa~----~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         121 VIQAENYQAFRLAAENGHLHVLNRLCEL------APTEIMAMIQAENYHAFRLAAE----NGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHS------CTTTHHHHHSHHHHHHHHHHHH----TTCHHHHHHHHHSCGGG
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHc------CCCccccccccCCCChhHHHHH----HhhHHHHHHHHHcCCcc
Confidence            3677888888888888888 88888874      67777665  458888888865    66788888888877543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7e-08  Score=74.34  Aligned_cols=61  Identities=21%  Similarity=0.163  Sum_probs=52.8

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                      .+.++||+|+..|+. ++++|++      .|+++|..|.+|.||+|.|.     .++.+++++|++.|++...
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~------~gad~n~~~~~g~t~l~~a~-----~g~~~~v~~Ll~~ga~~~~   63 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLE------AGANPNAPNSYGRRPIQVMM-----MGSARVAELLLLHGAEPNC   63 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHT------TTCCTTCCCSSSCCTTTSSC-----TTCHHHHHHHHTTTCCCCC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHH------cCCccccccccccccccccc-----ccccccccccccccccccc
Confidence            467899999999999 9999998      48999999999999999773     4678999999999886543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.39  E-value=3.1e-07  Score=74.99  Aligned_cols=65  Identities=18%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|..|+||||.|+.++.. +++.|++.      +.++|..|.+|.||||+|+.    .++.+++++|++.|++..
T Consensus       118 ~~~~~~~t~l~~~~~~~~~~~~~~l~~~------~~~~~~~d~~g~TpL~~A~~----~g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         118 AADNSGKTALHWAAAVNNTEAVNILLMH------HANRDAQDDKDETPLFLAAR----EGSYEASKALLDNFANRE  183 (209)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             ccCCCCCCcchhhcccCcceeeeeeccc------cccccccccccccccchhcc----ccHHHHHHHHHHCCCCCC
Confidence            4789999999999999999 99999984      88899999999999999976    678999999999998754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=6.7e-07  Score=69.57  Aligned_cols=71  Identities=23%  Similarity=0.166  Sum_probs=57.0

Q ss_pred             ccCCCChHHHHHHHhCcH-HHHHHhhCccc---------------------------cccCccccccCCCCCCHHHHHhh
Q 023199           21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQAN---------------------------ASQGLEVNAINHSGVTAFDLLLI   72 (286)
Q Consensus        21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~---------------------------~~~~v~vn~~N~~G~TaLdiA~~   72 (286)
                      +|..|+||||+|+..++. .++.++.....                           ...+++.+.+|.+|.||||+|..
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~  109 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhh
Confidence            688999999999998888 77665544222                           14578899999999999999976


Q ss_pred             CCCCCCcHHHHHHHHHcCCCCCC
Q 023199           73 SPSEAGDREIEEILRSAGATGMR   95 (286)
Q Consensus        73 ~~~~~~~~ei~~~L~~~Ga~~~~   95 (286)
                          .++.+++++|++.|++...
T Consensus       110 ----~g~~~iv~~ll~~gad~~~  128 (153)
T d1awcb_         110 ----HNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             ----TTCHHHHHHHHHTTCCTTC
T ss_pred             ----cchhheeeeccccccCCcc
Confidence                6788999999999987653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.30  E-value=7.9e-08  Score=86.64  Aligned_cols=65  Identities=17%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHH---HhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIEL---LLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~---LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+||.+|+. ++++   |++      .++++|.+|.+|+||||+|+.    .|+.+++++|++.|++..
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~------~~~~in~~~~~g~taL~~Aa~----~G~~~~v~~Ll~~g~~~~  153 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLT------SDEIVKVIQAENYQAFRLAAE----NGHLHVLNRLCELAPTEI  153 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--------CCSSCC--CHHHHHHHHHHHH----TTCHHHHHHHHHSCTTTH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHh------CCCcccccCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCcc
Confidence            5789999999999999998 8776   555      599999999999999999976    789999999999998653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.2e-06  Score=74.36  Aligned_cols=63  Identities=19%  Similarity=0.141  Sum_probs=54.7

Q ss_pred             CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199           24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD   96 (286)
Q Consensus        24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~   96 (286)
                      +|+|+||.|++.|+. ++++|++      .|+++|.++ ..|.||||+|..    .++.+++++|...|......
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~------~G~din~~~~~~g~tpL~~A~~----~~~~eiv~~L~~~~~~~~~~   68 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLE------GGANVNFQEEEGGWTPLHNAVQ----MSREDIVELLLRHGADPVLR   68 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHH------CCCCcCccCCCCCCCHHHHHHH----cCCHHHhhhhcccccccccc
Confidence            578999999999999 9999999      489999876 479999999976    66889999999998766543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.6e-06  Score=64.49  Aligned_cols=64  Identities=17%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199           20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM   94 (286)
Q Consensus        20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~   94 (286)
                      .+|.+|+||||+|+. ++. ++++|+++      +.++|..+..|.+|++.+..    .++.++.+.+++.|+...
T Consensus        31 ~~d~~g~t~L~~A~~-~~~~~v~~Ll~~------~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~~~~n   95 (156)
T d1bd8a_          31 ALNRFGKTALQVMMF-GSTAIALELLKQ------GASPNVQDTSGTSPVHDAAR----TGFLDTLKVLVEHGADVN   95 (156)
T ss_dssp             CCCTTSCCHHHHSCT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred             ccCCCCCcccccccc-cccccccccccc------cccccccccccccccccccc----cccccccccccccccccc
Confidence            367778888887764 666 77777763      66667777777777777654    345566666666666543