Citrus Sinensis ID: 023202

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------

MSAILCGKRSFFEDNLAATSPPVSKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEHSNSIPGRFHPDVF

ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccc

ccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHccccHHHcccccccccHHHcccccccccccccccccccccccHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc

msailcgkrsffednlaatsppvskrircsssspvrfspprssrshLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNElrlgsadnnlgsvagksdlaadanaqgvattngevpspddpsaskvfqldgpEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKqaehsnsipgrfhpdvf

msailcgkrsffednlaatsppvskrircsssspvrfspprssRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATtngevpspddpsASKVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQaehsnsipgrfhpdvf

MSAILCGKRSFFEDNLAATSPPVSKRIRCsssspvrfspprssrsHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEHSNSIPGRFHPDVF

***********************************************LDQLAAIFPDMDNQILDRALEECGDD********************************************************FQLDGPEWVELFVRE*******************ILEKSIC**********************EALIQENMILKRAV******************HLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHL******************

*SAILCGKRSFF*********************************HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL*********************************************LDGPEWVELFVREMMSSSNIDDARARASRALEILEKS**************************LIQENMILKRAVSIQH******************LVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTM********************

MSAILCGKRSFFEDNLAA**************************SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICAR*********HQENKMLKEQVEALIQENMILKRAVSI************QELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEHSNSIPGRFHPDVF

**********FF********************************SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGS**********************************************PEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEH***IPGRFH****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSAILCGKRSFFEDNLAATSPPVSKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSIQHERQKExxxxxxxxxxxxxxxxxxxxxxxxxxxxWRLMTLMFDLVLSNQVNNYALTMHLKQAEHSNSIPGRFHPDVF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		286
225445591		283	PREDICTED: uncharacterized protein LOC10	0.933	0.943	0.695	1e-112
359484221		276	PREDICTED: uncharacterized protein LOC10	0.923	0.956	0.684	1e-108
118483552		286	unknown [Populus trichocarpa]	0.933	0.933	0.678	1e-108
118488028		285	unknown [Populus trichocarpa]	0.930	0.933	0.675	1e-106
224090347		280	predicted protein [Populus trichocarpa]	0.919	0.939	0.669	1e-103
255572465		282	conserved hypothetical protein [Ricinus	0.933	0.946	0.684	1e-100
224144158		270	predicted protein [Populus trichocarpa]	0.884	0.937	0.653	1e-100
449443051		278	PREDICTED: uncharacterized protein LOC10	0.923	0.949	0.646	2e-96
363807922		262	uncharacterized protein LOC100809549 [Gl	0.909	0.992	0.611	1e-80
297801010		264	hypothetical protein ARALYDRAFT_493566 [	0.905	0.981	0.597	2e-79

>gi\|225445591\|ref\|XP_002285400.1\| PREDICTED: uncharacterized protein LOC100250952 isoform 1 [Vitis vinifera] gi\|297738994\|emb\|CBI28239.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/302 (69%), Positives = 238/302 (78%), Gaps = 35/302 (11%)

Query: 1   MSAILCGKRSFFEDNLAATSPPVSKRIRCSSSSPVRFSPPRS------------SRSHLL 48
           MSAI+CGKRSFFED    T+PPVSKRIRCSSSSPVRFSPPRS            S++ +L
Sbjct: 1   MSAIVCGKRSFFED--LPTTPPVSKRIRCSSSSPVRFSPPRSISASPSQSQSTASQASVL 58

Query: 49  DQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADAN- 107
           D L A+FPDMD Q L++ALEECG+DLDS I+SLNELRLGSA NNLG  AG SD+  +   
Sbjct: 59  DHLRALFPDMDKQFLEKALEECGNDLDSTIKSLNELRLGSAQNNLGFGAGTSDVGLETKV 118

Query: 108 ---AQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARASRALEI 164
              +QGVA TNGEV S +DPSA K   +DG EWVELFVREMMS+SN+DDARARASRALE+
Sbjct: 119 QLQSQGVAATNGEVVSSEDPSAPKNLSMDGAEWVELFVREMMSASNMDDARARASRALEV 178

Query: 165 LEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELH 224
           LEKSICARASAEAAQSFHQEN MLKEQVEAL+QEN+ILKRAVSIQHERQKE E+R+QEL 
Sbjct: 179 LEKSICARASAEAAQSFHQENLMLKEQVEALLQENIILKRAVSIQHERQKESEERNQELQ 238

Query: 225 HLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEHSNSIPGRFHPD 284
           HLKQ+V+QYQEQLRTLE                 VNNYAL+MHL+QA+ S+SIPG FHPD
Sbjct: 239 HLKQVVTQYQEQLRTLE-----------------VNNYALSMHLRQAQQSSSIPGHFHPD 281

Query: 285 VF 286
           VF
Sbjct: 282 VF 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359484221\|ref\|XP_003633082.1\| PREDICTED: uncharacterized protein LOC100250952 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|118483552\|gb\|ABK93674.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|118488028\|gb\|ABK95835.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224090347\|ref\|XP_002308974.1\| predicted protein [Populus trichocarpa] gi\|222854950\|gb\|EEE92497.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255572465\|ref\|XP_002527167.1\| conserved hypothetical protein [Ricinus communis] gi\|223533432\|gb\|EEF35180.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224144158\|ref\|XP_002325204.1\| predicted protein [Populus trichocarpa] gi\|222866638\|gb\|EEF03769.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449443051\|ref\|XP_004139294.1\| PREDICTED: uncharacterized protein LOC101217268 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|363807922\|ref\|NP_001242195.1\| uncharacterized protein LOC100809549 [Glycine max] gi\|255641074\|gb\|ACU20816.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|297801010\|ref\|XP_002868389.1\| hypothetical protein ARALYDRAFT_493566 [Arabidopsis lyrata subsp. lyrata] gi\|297314225\|gb\|EFH44648.1\| hypothetical protein ARALYDRAFT_493566 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		286
TAIR\|locus:2181738		179	AT5G02510 "AT5G02510" [Arabido	0.517	0.826	0.354	9.5e-18

TAIR\|locus:2181738 AT5G02510 "AT5G02510" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 57/161 (35%), Positives = 88/161 (54%)

Query:    89 ADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSS 148
             A  +L S+    D  +D    G    +G V S +D        +DG +WV+  V EM  +
Sbjct:    11 AKESLSSILFNGD--SDRTEAGFF--DGSVESWNDED-----MIDGAKWVDRLVSEMTKA 61

Query:   149 SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSI 208
              NIDD R R +  LE LE  I  + +  A++    E   +KE +++LI +N ILKR ++ 
Sbjct:    62 INIDDMRRRVAVILEALESII--KKNTNASKKL--EYASMKESLQSLINDNQILKRVIAN 117

Query:   209 QHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTL 249
             QH+R  E E++++++ HL+ +V QYQEQ+  LE S   M L
Sbjct:   118 QHQRSSENEEKAKQVLHLRGVVGQYQEQVHKLELSNYAMKL 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.129   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      286       270   0.00097  114 3  11 22  0.36    34
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  189 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.84u 0.15s 29.99t   Elapsed:  00:00:02
  Total cpu time:  29.84u 0.15s 29.99t   Elapsed:  00:00:02
  Start:  Sat May 11 16:28:19 2013   End:  Sat May 11 16:28:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		286
PF14817		632	HAUS5: HAUS augmin-like complex subunit 5	98.91
PF02845		42	CUE: CUE domain; InterPro: IPR003892 This domain m	98.27
smart00546		43	CUE Domain that may be involved in binding ubiquit	98.22
PF03474		39	DMA: DMRTA motif; InterPro: IPR005173 This region	97.36
COG3074		79	Uncharacterized protein conserved in bacteria [Fun	95.84
PF00627		37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	95.77
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	95.59
PRK15422		79	septal ring assembly protein ZapB; Provisional	94.63
PF06005		72	DUF904: Protein of unknown function (DUF904); Inte	93.73
PF09744		158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	93.26
smart00165		37	UBA Ubiquitin associated domain. Present in Rad23,	92.17
cd00194		38	UBA Ubiquitin Associated domain. The UBA domain is	91.92
PF15058		200	Speriolin_N: Speriolin N terminus	90.89
PF02403		108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	90.09
PRK09413		121	IS2 repressor TnpA; Reviewed	89.99
PRK10884		206	SH3 domain-containing protein; Provisional	88.78
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	88.36
PF10226		195	DUF2216: Uncharacterized conserved proteins (DUF22	87.33
PF10205		102	KLRAQ: Predicted coiled-coil domain-containing pro	86.72
KOG0971		1243	consensus Microtubule-associated protein dynactin	84.57
PRK11637		428	AmiB activator; Provisional	84.4
PHA02047		101	phage lambda Rz1-like protein	83.03
PF14555		43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	82.88
PLN02678		448	seryl-tRNA synthetase	82.73
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	81.9
KOG4005		292	consensus Transcription factor XBP-1 [Transcriptio	81.62
PF11932		251	DUF3450: Protein of unknown function (DUF3450); In	81.62
PF15058		200	Speriolin_N: Speriolin N terminus	81.37
PRK05431		425	seryl-tRNA synthetase; Provisional	81.25
PF07058		351	Myosin_HC-like: Myosin II heavy chain-like; InterP	81.22
PRK13182		175	racA polar chromosome segregation protein; Reviewe	81.2
TIGR03752		472	conj_TIGR03752 integrating conjugative element pro	81.03

>PF14817 HAUS5: HAUS augmin-like complex subunit 5	Back alignment and domain information

Probab=98.91  E-value=1.9e-08  Score=102.93  Aligned_cols=122  Identities=28%  Similarity=0.310  Sum_probs=106.0

Q ss_pred             ChhhHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202          133 DGPEWVELFVREMMSS-SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHE  211 (286)
Q Consensus       133 ~g~eWVEl~V~EM~sA-sd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQhe  211 (286)
                      .|-.+|.-||.|.+.. +...+...|..+.++..|+.+...+..++. ....|..++|..++.|..+...|++++..+++
T Consensus       308 e~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al-~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e  386 (632)
T PF14817_consen  308 EQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREAL-ALELEVAGLKASLNALRSECQRLKEAAAERQE  386 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666555544 457888899999999999998777666544 57779999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhh
Q 023202          212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAE  272 (286)
Q Consensus       212 R~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~  272 (286)
                      ...+++.+.|++.+++++|.+||+|||+|.                 .+||++.+||.+..
T Consensus       387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~Li-----------------K~Nsaakt~L~q~~  430 (632)
T PF14817_consen  387 ALRSLQAKWQRILDFRQLVSEKQEQIRALI-----------------KGNSAAKTQLEQSP  430 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhHHHHHHHHhCh
Confidence            999999999999999999999999999999                 99999999998754

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)	Back alignment and domain information

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)	Back alignment and domain information

>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []	Back alignment and domain information

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PRK15422 septal ring assembly protein ZapB; Provisional	Back alignment and domain information

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation	Back alignment and domain information

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans	Back alignment and domain information

>smart00165 UBA Ubiquitin associated domain	Back alignment and domain information

>cd00194 UBA Ubiquitin Associated domain	Back alignment and domain information

>PF15058 Speriolin_N: Speriolin N terminus	Back alignment and domain information

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK09413 IS2 repressor TnpA; Reviewed	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain	Back alignment and domain information

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PHA02047 phage lambda Rz1-like protein	Back alignment and domain information

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A	Back alignment and domain information

>PLN02678 seryl-tRNA synthetase	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>KOG4005 consensus Transcription factor XBP-1 [Transcription]	Back alignment and domain information

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>PF15058 Speriolin_N: Speriolin N terminus	Back alignment and domain information

>PRK05431 seryl-tRNA synthetase; Provisional	Back alignment and domain information

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana	Back alignment and domain information

>PRK13182 racA polar chromosome segregation protein; Reviewed	Back alignment and domain information

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		286
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 55/349 (15%), Positives = 106/349 (30%), Gaps = 102/349 (29%)

Query: 6   CGKRSFFEDNLAATSPPV--SKRIRCSSSSPV---RFSPPRSSRSHLLDQLAAIFPDMDN 60
            GK       +A     V  S +++C     +         S  + +L+ L  +   +D 
Sbjct: 161 SGKTW-----VALD---VCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDP 211

Query: 61  QILDRALEECG--DDLDSAIRSLNELRLGSADNN----LGSVAGKSDLAA-DANAQGVAT 113
               R+         + S    L  L       N    L +V       A + + + + T
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 114 T-NGEVPSPDDPSASKVFQLDGPEWV-------ELFV-----------REMMSSS----- 149
           T   +V      + +    LD             L +           RE+++++     
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 150 ----NIDDARAR--------ASRALEILEKSICARASAEAAQSFHQ-----EN------- 185
               +I D  A           +   I+E S+     AE  + F +      +       
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 186 ------KMLKEQVEALIQE----NMILKRA----VSIQHERQKEYE---DRSQELHHLKQ 228
                  ++K  V  ++ +    +++ K+     +SI      E +   +    LH  + 
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALH--RS 448

Query: 229 LVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYA---LTMHLKQAEHS 274
           +V  Y    +T + S  L+    D         Y    +  HLK  EH 
Sbjct: 449 IVDHYN-IPKTFD-SDDLIPPYLD--------QYFYSHIGHHLKNIEHP 487

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		286
1wgl_A		59	TOLL-interacting protein; CUE domain, structural g	99.08
2dhy_A		67	CUE domain-containing protein 1; structural genomi	98.99
1p3q_Q		54	VPS9P, vacuolar protein sorting-associated protein	97.87
1otr_A		49	Protein CUE2; protein-protein complex, cell cycle;	97.56
2di0_A		71	Activating signal cointegrator 1 complex subunit 2	96.23
2jee_A		81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.51
1vej_A		74	Riken cDNA 4931431F19; UBA domain, three helix bun	94.92
1z96_A		40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	94.27
1vg5_A		73	RSGI RUH-014, rhomboid family protein; UBA domain,	94.25
2jy5_A		52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	93.1
2knz_A		53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	92.01
2dah_A		54	Ubiquilin-3; UBA domain, structural genomics, NPPS	91.89
2g3q_A		43	Protein YBL047C; endocytosis, solution structure,	91.81
2cpw_A		64	CBL-interacting protein STS-1 variant; ubiquitin a	91.12
2dae_A		75	KIAA0733 protein; mitogen-activated protein kinase	91.01
1ify_A		49	HHR23A, UV excision repair protein RAD23 homolog A	90.19
2bwb_A		46	Ubiquitin-like protein DSK2; UBA, signaling protei	90.14
2ejs_A		58	Autocrine motility factor receptor, isoform 2; CUE	89.02
1wji_A		63	Tudor domain containing protein 3; UBA domain, str	88.96
2dak_A		63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	88.93
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	88.36
2v66_B		111	Nuclear distribution protein NUDE-like 1; structur	88.3
3hnw_A		138	Uncharacterized protein; coiled-coil, structural g	88.01
1wr1_B		58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	87.97
1wj7_A		104	Hypothetical protein (RSGI RUH-015); UBA domain, u	87.95
2dag_A		74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	86.54
2cp9_A		64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	86.53
1whc_A		64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	86.21
2ekf_A		61	Ancient ubiquitous protein 1; CUE, ubiquitin ligas	85.67
1veg_A		83	NEDD8 ultimate buster-1; ubiquitin associated doma	84.79
2crn_A		64	Ubash3A protein; compact three-helix bundle, struc	83.73
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	83.66
2ekk_A		47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	83.43
4g3o_A		58	E3 ubiquitin-protein ligase AMFR; all-helical stru	83.38
1wiv_A		73	UBP14, ubiquitin-specific protease 14; ubiquitin a	82.16
2dkl_A		85	Trinucleotide repeat containing 6C protein; TNRC6C	80.98

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4	Back alignment and structure

Probab=99.08  E-value=1.4e-10  Score=85.18  Aligned_cols=49  Identities=24%  Similarity=0.415  Sum_probs=44.7

Q ss_pred             ccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCcCCCC
Q 023202           44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADNN   92 (286)
Q Consensus        44 ~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~sa~~~   92 (286)
                      .+.-+++|+.+||+||+++|+.+|++|++|+|.||..|.++...+..+.
T Consensus         9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~   57 (59)
T 1wgl_A            9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS   57 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence            4677999999999999999999999999999999999999988776554

PyMOL of 1wgl

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A	Back alignment and structure

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4	Back alignment and structure

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4	Back alignment and structure

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}	Back alignment and structure

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1	Back alignment and structure

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1	Back alignment and structure

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1	Back alignment and structure

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B	Back alignment and structure

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}	Back alignment and structure

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1	Back alignment and structure

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1	Back alignment and structure

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1	Back alignment and structure

>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1	Back alignment and structure

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A	Back alignment and structure

>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1	Back alignment and structure

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}	Back alignment and structure

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}	Back alignment and structure

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1	Back alignment and structure

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1	Back alignment and structure

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2	Back alignment and structure

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1	Back alignment and structure

>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1	Back alignment and structure

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}	Back alignment and structure

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1	Back alignment and structure

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		286
d1mn3a_		54	a.5.2.4 (A:) Vacuolar protein sorting-associated p	8e-04
d1wgla_		59	a.5.2.4 (A:) Toll-interacting protein {Human (Homo	0.001

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 54	Back information, alignment and structure


class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (80), Expect = 8e-04
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 41 RSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84
           + R   L+ L  +FPDMD  +++         ++  + +L  L
Sbjct: 9  ENERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLSL 52

PyMOL of d1mn3a_

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Length = 59	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		286
d1wgla_		59	Toll-interacting protein {Human (Homo sapiens) [Ta	98.27
d1mn3a_		54	Vacuolar protein sorting-associated protein vps9 {	98.18
d2di0a1		63	Activating signal cointegrator 1 complex subunit 2	95.83
d1vg5a_		73	Rhomboid family protein At3g58460 {Thale cress (Ar	89.67
d1xb2b1		56	Elongation factor Ts (EF-Ts), N-terminal domain {C	89.17
d1aipc1		52	Elongation factor Ts (EF-Ts), N-terminal domain {T	87.07
d1efub3		54	Elongation factor Ts (EF-Ts), N-terminal domain {E	86.5
d1wjia_		63	Tudor domain containing protein 3, TDRD3 {Human (H	86.15
d2daha1		41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	82.91
d1wgna_		63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	80.85
d1seta1		110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	80.61
d1v92a_		46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	80.36

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.7e-07  Score=65.32  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=39.3

Q ss_pred             cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcC
Q 023202           45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLG   87 (286)
Q Consensus        45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~   87 (286)
                      +..+..|+.+||+||+.+|+.+|++|+.++|.||..|.++.-.
T Consensus        10 Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~   52 (59)
T d1wgla_          10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence            4569999999999999999999999999999999999886543

PyMOL of d1wgla_

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}	Back information, alignment and structure

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}	Back information, alignment and structure

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure