Citrus Sinensis ID: 023214

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEccccccHHHHHHHHHccccccccccccccccEEEEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHccccccccEEEEEEEccccccccccccHccccHEHccccccccHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHcEEEEEEEcccHHccccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mggsaidddweltspsngerTVVLVGrtgngksatgnsilgrrafksrasssgvtstCEMQRTvlkdgqvvnvidtpglfdfsagsefvGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTggdeledndeTLEDylgrecpkplkkgatklrDQQFEvdslkgysKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL
Flexible Loop (DISEMBL)
mggsaidddweltspsngertvvlvgrtgngksatgnsilgrrafksrasssgvtstcemqrtvlkdgqvvNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRecpkplkkgatklrdqqfevdslkgyskreISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLaqmksndeiRKLRENLERAqreteelrkqaekggcail
Low Complexity Region (SEG)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLvvfsvrsrfsQEEEAALHSLQTLFGKKIFDYMIVVFtggdeledndetledYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL
Disordered region (IsUnstruct)
*********************************************************CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL***************************************************************************************************************************************
Disordered Region (DISOPRED)
*********************VVLVGRTGNGKSATGNSILGRRAFKSR*********CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEM***************************************************************KGGCAIL
Disordered Region (DISEMBL)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF*************EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMKSNDEIRKLRENLER********************
Disordered Region (DISPRO)
*****************GERTVVLVGRTGNGKSAT****L*RRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAQLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.571	0.461	0.597	7e-53
O81025	463	Putative protein PHLOEM P	no	no	0.859	0.529	0.410	1e-48
Q9NUV9	329	GTPase IMAP family member	yes	no	0.849	0.735	0.320	5e-29
Q8K3K9	310	GTPase IMAP family member	no	no	0.536	0.493	0.379	7e-23
Q8K349	305	GTPase IMAP family member	no	no	0.470	0.439	0.435	2e-21
Q99JY3	219	GTPase IMAP family member	no	no	0.477	0.621	0.385	3e-21
Q8NHV1	300	GTPase IMAP family member	no	no	0.480	0.456	0.368	2e-20
Q5FVN6	304	GTPase IMAP family member	no	no	0.470	0.440	0.421	9e-20
Q75N62	688	GTPase IMAP family member	no	no	0.512	0.212	0.387	4e-19
Q96F15	307	GTPase IMAP family member	no	no	0.543	0.504	0.339	5e-19

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  207 bits (527), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/164 (59%), Positives = 120/164 (73%), Gaps = 1/164 (0%)

Query: 8   DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
           D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct: 32  DEFSASQPHPVE-NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query: 68  GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 127
           G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL+V SVR+R SQEEE  L +
Sbjct: 91  GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query: 128 LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
           LQ LFG KI DY+IVVFTGGD LED+  TLEDYLG   P  LK+
Sbjct: 151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKR 194

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/273 (41%), Positives = 170/273 (62%), Gaps = 28/273 (10%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
           + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
            D     + +  EI+ C+ MA++GIHAVL+V S R R S+EEE+ +++LQ +FG +I DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKE 199
            IVVFTGGD+LE++D+TL+DY    CP+ L K           V  L G  ++ + + K 
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTK-----------VLRLCG-GRKVLFDNKS 173

Query: 200 QMHKSYEDQLKRITEMVESKLKET-----TTRLEQQLAEEQAARLKAEEV---------A 245
           +  K   +Q+K++   VE+  ++T     T +L +++ EE   RL+ EE          A
Sbjct: 174 KDEKKKVEQVKQLLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEA 233

Query: 246 QLAQMKSNDEIRKLRENLERAQRETEELRKQAE 278
           +LA+M+ N  + K  E L+  + + ++L  QAE
Sbjct: 234 ELAEMQQNLLMEK--EKLQMEEAKNKQLIAQAE 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 155/284 (54%), Gaps = 42/284 (14%)

Query: 15  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
           P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134
           DTPG+FD    +    KEI++CI +   G HA+L+V  +  R+++EE  A   +  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 KIFDYMIVVFTGGDELEDNDETLEDYLGRECPK--------------PLKKGATKLRDQQ 180
           +   +MI++FT  D+L D +  L DYL RE P+               L   AT   +Q+
Sbjct: 144 RARSFMILIFTRKDDLGDTN--LHDYL-REAPEDIQDLMDIFGDRYCALNNKATGA-EQE 199

Query: 181 FEVDSLKGYSKREISELKE-----QMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQ 235
            +   L G  +R + E KE     +M++  E+++++ T+ ++         L +   E +
Sbjct: 200 AQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQAMQE--------LHRVELERE 251

Query: 236 AARLKAEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEK 279
            AR++ E           ++IRKL + +E+ +R+ +  +K AE+
Sbjct: 252 KARIREE---------YEEKIRKLEDKVEQEKRKKQMEKKLAEQ 286

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  107 bits (268), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+TGNSILGR+AF S   +  +T  CE   ++  DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCEKGVSIW-DGKELVVVDTPGIFD 91

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                    KEI +C+ +   G HA+L+V  +   ++ EE  A   L ++F KK   +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPLGC-YTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179
           ++ T  D+LED D  + +YL    P+ L++   + R++
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNR 185

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 91/140 (65%), Gaps = 6/140 (4%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           ++LVG+TG+GKSATGNSILGR+AF+S+ S+  VT+T + + T   +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                E   K+I  C  +A  G HAVL+V  V  R++ E++A    LQ +FG  I  Y I
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTI 221

Query: 142 VVFTGGDELEDNDETLEDYL 161
           +VFT  ++L +   +LE+Y+
Sbjct: 222 LVFTRKEDLAEG--SLEEYI 239

Mus musculus (taxid: 10090)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 4/140 (2%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+TGNSILG + F S   +  +T  CE +R    DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFD 91

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                    +EI + + +   G HA+L+V  +  R++ EE  A   +  +FGK+   +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 142 VVFTGGDELEDNDETLEDYL 161
           ++ T  D+LED D  + +YL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL 168

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 87/141 (61%), Gaps = 4/141 (2%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VLVG+TG+GKSAT N+ILG   F SR ++  VT  C+      + G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFD 69

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                +   KEI +CI  +  G HA+++V  +  R+++EE+  +  ++ +FGK    +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGDELEDNDETLEDYLG 162
           ++FT  +ELE   ++  D++ 
Sbjct: 129 ILFTRKEELE--GQSFHDFIA 147

Homo sapiens (taxid: 9606)

>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 6/140 (4%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           ++LVG+TG+GKSATGNSILGR+ F+S+ S+  VT   +     L +G+ + VIDTP +  
Sbjct: 105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILS 163

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                E   K+I  C  +A  G HAVL+V  V  R++ E++ A   LQ +FG  I  Y I
Sbjct: 164 PQNQPEATAKKI--CDILASPGPHAVLLVIQV-GRYTTEDQEAARCLQEIFGNGILAYTI 220

Query: 142 VVFTGGDELEDNDETLEDYL 161
           +VFT  +EL +   +LE+Y+
Sbjct: 221 LVFTRKEELAEG--SLEEYI 238

Rattus norvegicus (taxid: 10116)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 9/155 (5%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            ++L+GR+G GKSATGN+ILGR AF S+  +  VTS+ +  +  L D Q V V+DTP   
Sbjct: 477 NIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPSFI 535

Query: 81  DFSAGSE----FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI 136
             + G+E     + +EI  C+ + ++G+   ++V  +  RF+QE+E  +  L+  F + I
Sbjct: 536 Q-TPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENI 593

Query: 137 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
             YMIV+FT  ++L D D  L DY      K LKK
Sbjct: 594 MKYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKK 626

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 102/171 (59%), Gaps = 16/171 (9%)

Query: 7   DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK 66
           +D+   T P+     ++LVG+TG GKSATGNSILG+  F+S+  +  VT TC++ +T   
Sbjct: 18  EDNLSATPPA---LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-KTGTW 73

Query: 67  DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 126
           +G+ V V+DTP +F+  A ++ + K I  C  ++  G H +L+V  +  RF+ ++  A+ 
Sbjct: 74  NGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVAIR 132

Query: 127 SLQTLFGKKIFDYMIVVFT-----GGDELED-----NDETLEDYLGRECPK 167
            ++ +FG     +++++FT     GG  L+D     ++ +L+D L REC +
Sbjct: 133 KVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKD-LVRECER 182

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
255539412	339	aig1, putative [Ricinus communis] gi|223	0.996	0.837	0.720	1e-130
296089429	345	unnamed protein product [Vitis vinifera]	1.0	0.826	0.697	1e-129
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	1.0	0.838	0.697	1e-128
224146305	335	predicted protein [Populus trichocarpa]	0.978	0.832	0.668	1e-117
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.971	0.791	0.642	1e-111
363814318	336	uncharacterized protein LOC100807910 [Gl	0.985	0.836	0.638	1e-110
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.989	0.826	0.654	1e-108
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.992	0.822	0.615	1e-107
357470409	346	AIG1 [Medicago truncatula] gi|355506544|	0.989	0.815	0.604	3e-99
357470421	340	AIG1 [Medicago truncatula] gi|355506550|	0.989	0.829	0.553	1e-95

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/340 (72%), Positives = 264/340 (77%), Gaps = 56/340 (16%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSAIDDDWELTSPSNG RTVVLVGRTGNGKSATGNS+LGR+AFKSRASSSGVTSTCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           Q+TV+ DGQV+NV+DTPGLFDFSA SEFVGKEIVKCI MAKDGIHAVLVVFSVR+RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EEAAL SLQTLFG KIFDYMIVVFTGGDELEDNDETLEDYLGRECP+PL++         
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVA 245
           LKGYSK EI ELKEQMH+SYE+QLKRITEMVE KL+ETT RLEQQLAEEQAARLKAEE A
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEMVELKLRETTNRLEQQLAEEQAARLKAEEKA 300

Query: 246 QLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
           QLAQMKSNDEIR+LRENLERAQ+ET+ELR+QAE   C IL
Sbjct: 301 QLAQMKSNDEIRQLRENLERAQKETQELRRQAE-SRCNIL 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/340 (69%), Positives = 264/340 (77%), Gaps = 55/340 (16%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+         
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVA 245
           L+GYSKREI  LKEQMHKSYE+QLKRITEMVE KL+ETT +LE+QLAEEQAARLKAEE+A
Sbjct: 246 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIA 305

Query: 246 QLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
           Q AQ+ SNDEIRKLRENLERAQRETEELRK+AE G CAIL
Sbjct: 306 QRAQLASNDEIRKLRENLERAQRETEELRKRAESGKCAIL 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/340 (69%), Positives = 264/340 (77%), Gaps = 55/340 (16%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+         
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVA 245
           L+GYSKREI  LKEQMHKSYE+QLKRITEMVE KL+ETT +LE+QLAEEQAARLKAEE+A
Sbjct: 241 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIA 300

Query: 246 QLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
           Q AQ+ SNDEIRKLRENLERAQRETEELRK+AE G CAIL
Sbjct: 301 QRAQLASNDEIRKLRENLERAQRETEELRKRAESGKCAIL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/341 (66%), Positives = 251/341 (73%), Gaps = 62/341 (18%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSA+DDDWE  SPSNG RT+VLVGRTGNGKSATGNSILGR+AFKSRASSSGVTS+CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRTVL+DGQ++NVIDTPGLFDFSAGSEFVG+EIVKCI MAKDGIHAVLVVFSVR+RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EEAAL SLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+         
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240

Query: 186 LKG-YSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEV 244
           LKG +S  EISEL+EQM + YEDQLKR+T+MVE KLKE T  LE++LAEEQAARL+AEE 
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDMVEMKLKEATGNLERRLAEEQAARLRAEES 300

Query: 245 AQLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
           AQL Q KSN+EIR LRE LE+A    EELR    KGGCAIL
Sbjct: 301 AQLEQRKSNEEIRMLRERLEKAH---EELRN---KGGCAIL 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/336 (64%), Positives = 247/336 (73%), Gaps = 59/336 (17%)

Query: 5   AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV 64
           +IDDDWELTS SN  RTVVLVGRTGNGKSATGN+ILGR+AFKSRASSS V+++CE++ T 
Sbjct: 19  SIDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTE 78

Query: 65  LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 124
           L +GQ+VNVIDTPGLFD SAGSEFVGKEIVKCI +AKDGIHAV+VVFSVR+RF++EEE A
Sbjct: 79  LNNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETA 138

Query: 125 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK------------- 171
           L SLQTLFG KI DYMIVVFTGGDELE+NDETLEDYLGRECP+PLK+             
Sbjct: 139 LRSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFD 198

Query: 172 ---------------------------GATKLRDQQF---------------EVDSLKGY 189
                                      G     D+ F               EVDSLKGY
Sbjct: 199 NKTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGY 258

Query: 190 SKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQ 249
           SK EI E K+QM ++Y++QLKRITEMVESKL+E T RLE+QLAEEQAARLKAEE A LAQ
Sbjct: 259 SKGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQAARLKAEENAMLAQ 318

Query: 250 MKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
           M+S+DEIRKLRE+LE+A    EELRK+   GGCAIL
Sbjct: 319 MRSDDEIRKLREHLEKAH---EELRKRG-GGGCAIL 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/340 (63%), Positives = 246/340 (72%), Gaps = 59/340 (17%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+I DDWELTS SN  RTVVLVGRTGNGKSATGN+ILGR+ FKSRASSS V+++CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           Q T L DGQ+VNVIDTPGLFD S GSEFVGKEIVKCI +AKDGIHAV+VVFSVR+RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EE AL SLQTLFG KI DYMIVVFTGGDELE+N ETLEDYLGRECP+PLK+         
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVA 245
           LKGYSK EI + K+QM ++Y+DQLKRITE+VESKL+E T RLEQQL EEQAARLKAEE A
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEIVESKLREATMRLEQQLVEEQAARLKAEENA 300

Query: 246 QLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
            LAQM+S+DEIRKLRE+LE+A    EELRK+ E G CAIL
Sbjct: 301 MLAQMRSDDEIRKLREHLEKAH---EELRKRGE-GRCAIL 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/344 (65%), Positives = 252/344 (73%), Gaps = 62/344 (18%)

Query: 1   MGGSAIDDDWEL--TSPSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS 56
           MGGSAI++DWEL  TSP+NG   RTVVLVGRTGNGKSATGNSILGR+AFKSRA SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 116
           T E+Q TVL DGQ ++VIDTPG+FDFSAGS+FVGKEIVKCI MAKDGIHAVLVVFSVR+R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK------ 170
           FS EEEAAL SLQTLFG KI +YMIVVFTGGDELE+N+ETLEDYLGR CP PLK      
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180

Query: 171 ----------------------------------KGATKLRDQQF--------------- 181
                                              G     D+ F               
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240

Query: 182 EVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKA 241
           EVDSL+GY+++E+ ELKEQMH+SY++QLKRITEMVESKL+ETT RLEQQLAEEQAARLKA
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMVESKLRETTMRLEQQLAEEQAARLKA 300

Query: 242 EEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
           EE AQ AQ KSNDEIR+LRE+L+RAQ   EELRK+ E   CAIL
Sbjct: 301 EENAQHAQRKSNDEIRQLREHLQRAQ---EELRKRGESSNCAIL 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/341 (61%), Positives = 252/341 (73%), Gaps = 58/341 (17%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSAI DDWE  +  NG RT+VLVGRTGNGKSATGNSILGR+AF+S +SS+GVTSTCE+
Sbjct: 6   MGGSAISDDWEFAA--NGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRTVL+DGQ+++VIDTPGLFDFSA  EF+G EIVKCI MAKDGIHAVLVV SVR+RFS+E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK---------- 170
           E+AA+ SL+  FG KI DYM++VFTGGD+LEDN+ETLEDYLGR+CP+PLK          
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183

Query: 171 -----------KGATKLR----------------------------------DQQFEVDS 185
                      K A +L+                                  +Q  EV++
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVA 245
           L GYSK+EI ELKEQM KSYE+QL+RITE+VESKLK+TT RLE+QLA+EQAARL+AE  A
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEVVESKLKDTTHRLEEQLAKEQAARLEAELSA 303

Query: 246 QLAQMKSNDEIRKLRENLERAQRETEELR-KQAEKGGCAIL 285
           + AQ KS++EIRKLRE LERAQRETEELR + A++G C IL
Sbjct: 304 KEAQKKSDNEIRKLREYLERAQRETEELRGRSADRGVCNIL 344

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470409|ref|XP_003605489.1| AIG1 [Medicago truncatula] gi|355506544|gb|AES87686.1| AIG1 [Medicago truncatula]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 211/349 (60%), Positives = 248/349 (71%), Gaps = 67/349 (19%)

Query: 1   MGGSAIDDDWELTSP---------SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS 51
           MGGS ++DDWEL S          +N  RTVVLVGRTGNGKSATGNSILG++ FKSRASS
Sbjct: 1   MGGSYVEDDWELASSGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASS 60

Query: 52  SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVF 111
           SGVTS+CEMQ   L DGQ+VNVIDTPGLF+ SAGSEF+GKEIVKCI  AKDGIHA+LVV 
Sbjct: 61  SGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVL 120

Query: 112 SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
           SVRSRFS+EEE AL SLQTLFG KI DYMIVVFTGGDELED+++TL+DYLGRECP+ LK+
Sbjct: 121 SVRSRFSEEEENALRSLQTLFGSKIVDYMIVVFTGGDELEDDEDTLDDYLGRECPESLKQ 180

Query: 172 ----------------------------------------GATKLRDQQF---------- 181
                                                   G     D+ F          
Sbjct: 181 ILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVLQNGGQPYTDELFAELKKGAMKL 240

Query: 182 -----EVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQA 236
                +VDSL+GYS+ +ISELK+ M ++YE+QLK ITEM+ESKLKE TTRLE+QLAEEQA
Sbjct: 241 HREQRKVDSLEGYSEGQISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEKQLAEEQA 300

Query: 237 ARLKAEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
           ARL+AE+ A+LAQ KS+DEIRKLR++LE+A    EELRK+ +KGGCAIL
Sbjct: 301 ARLRAEDSAKLAQKKSDDEIRKLRKHLEKAH---EELRKRGDKGGCAIL 346

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470421|ref|XP_003605495.1| AIG1 [Medicago truncatula] gi|355506550|gb|AES87692.1| AIG1 [Medicago truncatula]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/343 (55%), Positives = 230/343 (67%), Gaps = 61/343 (17%)

Query: 1   MGGSAI--DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC 58
           MGGS++   DDWE  S  N  +T+VLVGRTGNGKSATGNSILG++ F SRASSSG+T++C
Sbjct: 1   MGGSSVLSVDDWEFASSPNDVKTLVLVGRTGNGKSATGNSILGKKVFNSRASSSGITTSC 60

Query: 59  EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS 118
           EMQ + + DGQ VNVID+PGLFDFS G E +GKEI+KCI +AKDGIHAV+VVFSVR+RF+
Sbjct: 61  EMQTSEMNDGQTVNVIDSPGLFDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRTRFT 120

Query: 119 QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-------- 170
           +EEE AL ++Q LFG KI D+MIVVFTGGDELE+NDETL+DYLGR+CP+PLK        
Sbjct: 121 EEEENALRNVQKLFGSKIVDHMIVVFTGGDELEENDETLDDYLGRDCPEPLKAILALCGN 180

Query: 171 --------------------------------KGATKLRD----------------QQFE 182
                                            G    RD                QQ E
Sbjct: 181 RCVLFDNKTKDEKKQTEQVQQLLSFVNMVVSQNGGQPYRDELFKELKKKGQMELEKQQRE 240

Query: 183 VDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAE 242
            DS+KGYS   I ELK+Q  + Y DQL RIT+MVESKL+E TTRLE QLA+EQAARL+AE
Sbjct: 241 ADSMKGYSIEYILELKKQREQEYNDQLTRITDMVESKLREATTRLELQLAKEQAARLEAE 300

Query: 243 EVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEKGGCAIL 285
           + A  AQMKS  EI +LR +LE+A    +ELRK+  +  CAIL
Sbjct: 301 KYANAAQMKSKYEIEELRRHLEQAH---QELRKRDAETSCAIL 340

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.929	0.774	0.408	2.8e-50
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.891	0.816	0.388	3.2e-42
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.922	0.782	0.370	7.5e-41
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.954	0.690	0.369	1.6e-40
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.943	0.762	0.382	2e-40
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.957	0.837	0.326	3e-37
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.894	0.550	0.349	6.3e-37
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.912	0.778	0.329	9.2e-36
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.877	0.744	0.344	1.7e-34
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.828	0.784	0.347	3e-30

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 116/284 (40%), Positives = 174/284 (61%)

Query:     1 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
             MGG  ++DDWE  S SN +RT+VLVGRTGNGKSATGNSILGR+AF+SRA + GVTSTCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQE 120
             QR V +DG ++NV+DTPGLFD S  ++F+GKEIV+CI +A+DGIHA+L          +E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVRRLA-EE 124

Query:   121 EEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQ 180
             E+  L  LQ LFG KI DYMIVVF               YL   CP+ LK+    + D +
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKE-ILGICDNR 183

Query:   181 FEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTR-LEQQL---AEEQA 236
               +     ++ +   ++K+       +Q++++  +VES +K+   +    +L    +E+A
Sbjct:   184 LVL-----FNNKTTDKVKKA------EQVQKLLSLVESVVKQNNGKPYSDELFHELQEEA 232

Query:   237 ARLKAEEV-AQLAQMKSNDEIRKLRENLERA-QRETEELRKQAE 278
              +L+ ++   +L Q  SN+EI + ++ ++ +  R+   + +  E
Sbjct:   233 IKLRDQKKEVELLQGYSNNEIDEFKKQIDMSYDRQLSRITEMVE 276

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 105/270 (38%), Positives = 154/270 (57%)

Query:    16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
             S     +VLVGRTGNGKSATGNS++G++ F S+A +SGVT  C+    V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
             TPGLFD S  +E++ KEIV+C+ +A+ GIHAVL          QEEE  L +LQ LFG +
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132

Query:   136 IFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREIS 195
             I DY++VVF               YLGR+CP  +K+      +++  +D+ K + +    
Sbjct:   133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDN-KTHDE---G 188

Query:   196 ELKEQMHK--SYEDQLKR------ITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQL 247
             +  EQ+HK  S  D ++R       T+     +KE + +L +   EE  ++  +EE A  
Sbjct:   189 KKAEQVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKH-HEELESKNYSEECA-- 245

Query:   248 AQMKSNDEIRKLRENLERAQRETEELRKQA 277
             A+MK N  +   +ENL++   + E+  K A
Sbjct:   246 AEMK-NQSLILYKENLKQMSEQLEKKLKDA 274

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 100/270 (37%), Positives = 148/270 (54%)

Query:     8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
             D WEL S S   + VVLVGRTGNGKSATGNSI+GR+ F+S+  + GVT+ C+  R V  D
Sbjct:    24 DRWELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPD 83

Query:    68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHS 127
             G ++NVIDTPGLFD +  +EF+ KEIV C+ +A++G+HAV+          QEEE AL +
Sbjct:    84 GPIINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCT 143

Query:   128 LQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSL- 186
             LQ LFG KI DY+IVVF               YL   CP+ LK        ++   D+  
Sbjct:   144 LQMLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRT 203

Query:   187 --KGYSKREISELKEQMHK-SYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEE 243
               +G   +++ +L   +     E      T+ +  +++E   R++++  E +   +  EE
Sbjct:   204 KDEGVKAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKREEKEIEEKNIADEE 263

Query:   244 VAQLAQ---MKSNDEIRKLRENLERAQRET 270
              A L +   M  +  +  +   +ER  +ET
Sbjct:   264 KAALKKQLDMSYSQNMNMMALMMERIFKET 293

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 106/287 (36%), Positives = 160/287 (55%)

Query:     3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR 62
             GS ++   +L       RT++LVGR+GNGKSATGNSILGR+AFKS+  +SGVT+ CE+Q 
Sbjct:    31 GSGLEVTCDLRLEHKPARTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQS 90

Query:    63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEE 122
             + L +GQ++NVIDTPGLF  S  +EF  +EI++C  + K+GI AVL          +EE+
Sbjct:    91 STLPNGQIINVIDTPGLFSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEK 150

Query:   123 AALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLG-----RECPKPLKKGATKLR 177
             +AL +L+ LFG KI DYMIVVF               YL      +E  +P        R
Sbjct:   151 SALFALKILFGSKIVDYMIVVFTNEDSLEDDGDTFEEYLEDSPDFKEILEPCNDRKVLFR 210

Query:   178 DQQFEVDSLKGYSKREISELKEQMH----KSYEDQLKRITEMVESKLKETTTRLEQQLAE 233
             ++     S K    +E+    E++     KSY   L    E+ E+   ET  +++QQ   
Sbjct:   211 NRSNAPVSQKAKQVQELLNYVEEIARLNGKSYMADLSH--EIREN---ETAFQIKQQEIL 265

Query:   234 EQAARLKAEEVAQLAQ-MKSNDEIRKLRENLERAQRETEELRKQAEK 279
             E       +E+ Q+ + M+ + E ++LR+ +ER + E  E +++ E+
Sbjct:   266 EMKGLYTRQEMLQMKKDMEKSFENQQLRQMMERVETELRETKERLEQ 312

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 109/285 (38%), Positives = 153/285 (53%)

Query:     8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
             D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct:    32 DEFSASQPHPVEN-IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query:    68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHS 127
             G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL          QEEE  L +
Sbjct:    91 GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query:   128 LQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKK-----GATK-LRDQQF 181
             LQ LFG KI DY+IVVF               YLG   P  LK+     G    L D + 
Sbjct:   151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKT 210

Query:   182 EVDSLKGYSKREISELKEQMHKS-----YEDQLKRITEMVESKLKETTTRLEQQ-LAEEQ 235
             + D  K     E+ +L + + K      Y D++  + +    + K+    LE +  +EEQ
Sbjct:   211 KDDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQ 270

Query:   236 AARLKAE-EVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEK 279
              A L  E ++     +K+  E+  + +N++ A    E+L +Q EK
Sbjct:   271 LAALMKELQIMNERNLKAMAEM--MEKNMKIAMEAQEKLFEQREK 313

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 92/282 (32%), Positives = 153/282 (54%)

Query:     4 SAIDDDWELTSPSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ 61
             + ++D  +L  PS  E  + +VLVGRTGNGKSATGNS++G++ F+S   ++GVT  CE  
Sbjct:     2 AGLEDTTDLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETC 61

Query:    62 RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEE 121
               V   G  +NVIDTPGLFD S  +E++ +EI+ C+ +A+DG+HAV+          QEE
Sbjct:    62 VAVTPCGTGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEE 121

Query:   122 EAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQF 181
             EA L++LQ +FG +I DY++V+F               YL + CP+ LK        ++ 
Sbjct:   122 EATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRRI 181

Query:   182 EVDSLKGYSKREISELKEQM-H-KSYEDQLKRI--TEMVESKLKETTTRLEQQLAEEQAA 237
               D+      +++ +++E + H  + E     I  T+ +  K+++    L +Q  E ++ 
Sbjct:   182 LFDNRTTDEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQKEAETLREQQKEVESK 241

Query:   238 RLKAEEVAQLA---QMKSNDEIRKLRENLERAQRETEELRKQ 276
              L A E+ +     Q + +  +  + E L    RE  E +++
Sbjct:   242 DLAAAEIEKWKKHYQTEHDKNMNMMAEMLGNRLREDSERQEK 283

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 92/263 (34%), Positives = 144/263 (54%)

Query:    20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDY 139
              D     + +  EI+ C+ MA++GIHAVL          +EEE+ +++LQ +FG +I DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKE 199
              IVVF               Y    CP+ L K       ++   D+     K+++ ++K+
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query:   200 QMHK--SYEDQLKRI--TEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMKSNDE 255
              + +  +  +Q   I  T  +  K+KE     E+   EE+    K    A+LA+M+ N  
Sbjct:   186 LLARVENVGEQTGGIPYTYQLHRKIKEEND--ERLREEERVIESKNRAEAELAEMQQNLL 243

Query:   256 IRKLRENLERAQRETEELRKQAE 278
             + K  E L+  + + ++L  QAE
Sbjct:   244 MEK--EKLQMEEAKNKQLIAQAE 264

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 88/267 (32%), Positives = 145/267 (54%)

Query:    11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
             E  S     + +VLVGRTGNGKSATGNS++G+  F S A ++GVT TC+  + V   G  
Sbjct:     5 EQASAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSR 64

Query:    71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQT 130
             +NVIDTPGLFD S  +EF+ KEI+ C+ +A+ G+H V+          QEEE  L +LQ 
Sbjct:    65 INVIDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQV 124

Query:   131 LFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYS 190
             LFG +I DY+IV+F               Y  + CP  LK       D++   +++    
Sbjct:   125 LFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDK 184

Query:   191 KREISELKEQMH---KSYE-DQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQ 246
              +++ ++++ +    K  E ++ K     +  ++KE T  L++Q    +A+ L   E+A+
Sbjct:   185 HKKVEQVQQFLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQKKAVEASNLGEAELAK 244

Query:   247 LA---QMKSNDEIRKLRENLERAQRET 270
             +    QM+ +  + ++ + ++   +ET
Sbjct:   245 MKKELQMEHDTRMSQMEDMVKNMLKET 271

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 93/270 (34%), Positives = 151/270 (55%)

Query:     6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL 65
             +++DW+   P   ERT+VL+GRTGNGKSATGNSILG+  F+S+A    +T  C++ ++ L
Sbjct:    10 VENDWK---P---ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAAL 125
              +G  +NVIDTPGLF  S+ ++F  +EIV+C+ +AK GI AVL          +EE++ L
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123

Query:   126 HSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDS 185
              +L+ LFG +I DY+IVVF               YL  +CP+  ++   +  D++   D+
Sbjct:   124 RTLKILFGSQIVDYIIVVFTNEDALECGETLDD-YL-EDCPE-FQEILEECDDRKVLFDN 180

Query:   186 LKGYSKREISELKEQMHKSYEDQLKRITEMVESKL--KETTTRLEQQLAEEQAA-RLKAE 242
                Y+   +S+   Q+H      L  + E +  K   K     L  +L E +A  + K +
Sbjct:   181 --SYNA-PVSKKDRQVH-----DLLNLVEQISKKNNGKSYMADLSHELRENEATIKEKQK 232

Query:   243 EVAQLAQMKSNDEIRKLRENLERAQRETEE 272
             ++ ++    S  EI ++++ LE++  E  E
Sbjct:   233 QIEEMKGWSSKQEISQMKKELEKSHNEMLE 262

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 88/253 (34%), Positives = 132/253 (52%)

Query:    15 PSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVN 72
             PS  E  R +VLVG TGNGKS+TGNS++G+  F           TC+  +T+  DGQ++N
Sbjct:     7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKA-KTL--DGQIIN 60

Query:    73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLF 132
             VIDTPGLFD S  ++++ KEI+ C+ +   G+HAV+          +EEEAAL+ LQ LF
Sbjct:    61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120

Query:   133 GKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKR 192
             G KI DY++V+F               YL R CP+ LK   T LR            +  
Sbjct:   121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLK---TVLRLCGGRRVLFNNKTTD 177

Query:   193 EISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMK- 251
             E+ ++ EQ+ K     ++ I  +   K   T    E  L E++   +  E+  ++   K 
Sbjct:   178 EVKKI-EQV-KQLLAHVEAIENLNGGKALFTE---ENDLNEKRQGEMLMEQEMEVQSKKP 232

Query:   252 SNDEIRKLRENLE 264
              N E+ ++++ LE
Sbjct:   233 ENTEVEEMKKQLE 245

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021940001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (340 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
pfam04548	211	pfam04548, AIG1, AIG1 family	7e-74
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	1e-67
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	3e-12
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-09
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	3e-07
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	1e-06
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	2e-06
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	2e-06
cd00880	161	cd00880, Era_like, E	8e-06
pfam05103	131	pfam05103, DivIVA, DivIVA protein	3e-05
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	1e-04
TIGR00437	591	TIGR00437, feoB, ferrous iron transporter FeoB	8e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.002
pfam04111	356	pfam04111, APG6, Autophagy protein Apg6	0.002
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	0.003
pfam00735	280	pfam00735, Septin, Septin	0.004

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  224 bits (574), Expect = 7e-74
 Identities = 87/152 (57%), Positives = 116/152 (76%), Gaps = 4/152 (2%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             +VLVG+TGNGKSATGNSILGR+AF+S+  + GVT TC++      DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
           FD S  ++F+ KEI++C+ +A+ G HAVL+V S+  RF++EEE AL +LQ LFG KI DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
           MIVVFT  D+LED+   L+DYL   CP+ LK+
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLKE 148

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  208 bits (532), Expect = 1e-67
 Identities = 79/147 (53%), Positives = 106/147 (72%), Gaps = 4/147 (2%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             +VLVG+TGNGKSATGN+ILGR+ F+S+ S+SGVT TC+ +  V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
           FD S   E + KEI++C+ ++  G HA L+V  +  RF++EEE A+  LQ LFG+K+ D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECP 166
            IV+FT GD+LE    +LEDYL   C 
Sbjct: 119 TIVLFTRGDDLE--GGSLEDYLEDSCE 143

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           T++++G+TG GKS+T NSI G R     A  S      E+ RTV  DG  +N+IDTPGL 
Sbjct: 33  TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIF 137
           +  +  + V ++I+  I   + K  I  VL V  +   R    +   L ++   FG  I+
Sbjct: 91  E--SQDQRVNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNLDVPLLRAITDSFGPSIW 148

Query: 138 DYMIVVFT 145
              IVV T
Sbjct: 149 RNAIVVLT 156

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 24/181 (13%)

Query: 23  VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV-VNVIDTPGLFD 81
           V+VGR G GKS+  N++LG       +   G T   ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  FSA-GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
           F   G E + + +++       G   +L+V     R S EE+A L  L+ L  + I   +
Sbjct: 60  FGGLGREELARLLLR-------GADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PI 109

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQ 200
           I+V    D L +  E  E     E  K L           FEV +  G     + EL E+
Sbjct: 110 ILVGNKID-LLEEREVEELLRLEELAKILGVPV-------FEVSAKTG---EGVDELFEK 158

Query: 201 M 201
           +
Sbjct: 159 L 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            V LVGR   GKS   N++ G +     +   G T   +    VL  G+ + ++DTPG  
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIV-SDYPGTTR--DPILGVLGLGRQIILVDTPG-L 56

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
              A      +   + +   ++    +L+V       ++++E  L  L+ L  K     +
Sbjct: 57  IEGASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKKP----I 111

Query: 141 IVVFT 145
           I+V  
Sbjct: 112 ILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 20/194 (10%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            + +VG    GKS   N++LG     +    +  T+   + R  L  G  V ++DTPGL 
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLPT--GVTPTTAVITVLRYGLLKG--VVLVDTPGLN 57

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
                   + +  +           AV+ V S     ++ E   L  +    GKKIF   
Sbjct: 58  STIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF--- 107

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDS---LKGYSKREISEL 197
             V    D L + +        RE    L+ G      + F V +   L+   + +   L
Sbjct: 108 -FVLNKIDLLSEEELEEVLEYSREELGVLELG--GGEPRIFPVSAKEALEARLQGDEELL 164

Query: 198 KEQMHKSYEDQLKR 211
           ++   +  E+ L+ 
Sbjct: 165 EQSGFEELEEHLEE 178

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 54/256 (21%), Positives = 92/256 (35%), Gaps = 43/256 (16%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTP 77
           + TV LVG    GK+   N++ G  A +   +  GVT   E +   LK  G  + ++D P
Sbjct: 3   KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVT--VEKKEGKLKYKGHEIEIVDLP 58

Query: 78  GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL-FGKKI 136
           G +  +A SE    E V    + +     ++ V  V +  +  E     +LQ L  G   
Sbjct: 59  GTYSLTAYSE---DEKVARDFLLEGKPDLIVNV--VDA--TNLERNLYLTLQLLELGIP- 110

Query: 137 FDYMIVVFTGGDELED-----NDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSK 191
              MI+     DE +      + E L   LG   P                V        
Sbjct: 111 ---MILALNMIDEAKKRGIRIDIEKLSKLLG--VP----------------VVPTVAKRG 149

Query: 192 REISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKA---EEVAQLA 248
             + ELK  + +  E +          +++E    LE    + +   +K    +E+ +  
Sbjct: 150 EGLEELKRAIIELAESKTTPREVDYGEEIEEEIKELEALSEDPRWLAIKLLEDDELVEAV 209

Query: 249 QMKSNDEIRKLRENLE 264
             +    + +L E L 
Sbjct: 210 LKEPEKRVEELLEELS 225

Length = 653

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
            ++++G++G GKSAT NSI G   F + A   G TS  E++  V   G  + VIDTPGL
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL 176

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 23  VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82
            + GR   GKS+  N++LG+      +   G T     +   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIV-SPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83  SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142
                   +E  +      D    VL+V  V S  +  EE A   L    GK +    ++
Sbjct: 60  GGLGRERVEEARQVA----DRADLVLLV--VDSDLTPVEEEAKLGLLRERGKPV----LL 109

Query: 143 VFTGGDELEDNDE 155
           V    D + +++E
Sbjct: 110 VLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 20/119 (16%)

Query: 177 RDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLE-------- 228
            +++F+   ++GY   E+ E  +Q+ K YE   K   E+ + +++    +LE        
Sbjct: 7   LNKEFKK-KMRGYDPDEVDEFLDQVIKDYEALYKENEEL-KEEIERLEEKLEEYKELEET 64

Query: 229 --------QQLAEE--QAARLKAEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQA 277
                   Q+ AEE    A+ +AE + + A+ K+   +    E  ++   E +EL++Q+
Sbjct: 65  LQKTLVVAQETAEEVKANAQKEAELIIKEAEAKAERIVNDANEEAKKLATEYDELKRQS 123

The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils. Length = 131

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
          T++++G+ G GKS+T NSI+G R     A  S       + RT  + G  +N+IDTPGL 
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLI 97

Query: 81 D 81
          +
Sbjct: 98 E 98

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 53/260 (20%), Positives = 96/260 (36%), Gaps = 37/260 (14%)

Query: 29  GN---GKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSA 84
           GN   GKS   N++ G     +  +  GVT   E +   L   G+ + ++D PG++  + 
Sbjct: 1   GNPNVGKSTLFNALTGANQ--TVGNWPGVT--VEKKEGKLGFQGEDIEIVDLPGIYSLTT 56

Query: 85  GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL-FGKKIFDYMIVV 143
            S    +E V    +  +    V+ V       S  E     +LQ L  G      MI+ 
Sbjct: 57  FS---LEEEVARDYLLNEKPDLVVNVVDA----SNLERNLYLTLQLLELGIP----MILA 105

Query: 144 FTGGDELED-----NDETLEDYLGRECPKPL---KKGATKLRDQQFEVDSLKGYSKREIS 195
               DE E      ++E LE+ LG           +G  +L+D   +   LK   KR I 
Sbjct: 106 LNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAIGLKELKKRAIE 165

Query: 196 ELKEQMHKSYED-QLKRITEMVESKLKETTTRLEQQLAEEQAARLK--AEEVAQLAQMKS 252
            + E    +Y+  ++      +   + +    +   L E+ +  ++     +A++   +S
Sbjct: 166 IVPE----AYQVVEVVEGLIEIIYSISKRGLEILLGLLEDLSLEIEKIERNLAEVVIKES 221

Query: 253 NDEIRKLRENLERAQRETEE 272
                     +    R   E
Sbjct: 222 --PSNLSPTEIADEDRVLVE 239

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV-VNVIDTP 77
           E  +V+VG    GKS   N +LG +   +     G T                 N++DT 
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISIT-EYKPGTTRNYVTTVIEEDGKTYKFNLLDTA 59

Query: 78  GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVL 108
           G  D+ A      + +   + +  D +  VL
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVF-DIVILVL 89

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 193 EISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQ---QLAEEQAARLKAEEVAQLAQ 249
           E+ ELK++  +   D+L+ + E  +  L      L++   QL  E+   L+   +     
Sbjct: 71  ELDELKKEEER-LLDELEEL-EKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNN 128

Query: 250 MKSNDEIRKLRENLERAQRETEELRK 275
           ++  D ++ L    E +  + ++LRK
Sbjct: 129 LQLEDNLQSLELQYEYSLNQLDKLRK 154

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSR---ASSSGVTSTCEMQRT--VLKDGQV---VN 72
           +++VG +G GKS   N++ G + + S+   A    +T T E++ +   L++  V   + 
Sbjct: 6  NIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKLT 65

Query: 73 VIDTPGLFDF 82
          VIDTPG  D 
Sbjct: 66 VIDTPGFGDN 75

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 21 TVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQV---VN 72
          T+++VG +G GK+   N++        R     +     T   +     +++  V   + 
Sbjct: 6  TLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLT 65

Query: 73 VIDTPGLFDFS 83
          VIDTPG  D  
Sbjct: 66 VIDTPGFGDAI 76

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.96
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.95
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.86
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.83
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.81
COG1159	298	Era GTPase [General function prediction only]	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.78
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.77
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.75
PRK15494	339	era GTPase Era; Provisional	99.71
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.7
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.7
PRK00089	292	era GTPase Era; Reviewed	99.69
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.69
COG0218	200	Predicted GTPase [General function prediction only	99.68
COG0488	530	Uup ATPase components of ABC transporters with dup	99.68
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.67
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.66
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.66
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.66
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.65
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.65
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.65
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.64
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.64
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.64
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.64
PRK00093	435	GTP-binding protein Der; Reviewed	99.63
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	99.63
PRK03003	472	GTP-binding protein Der; Reviewed	99.63
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.61
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.61
COG1084	346	Predicted GTPase [General function prediction only	99.61
PRK00093	435	GTP-binding protein Der; Reviewed	99.61
COG0488	530	Uup ATPase components of ABC transporters with dup	99.61
PRK11147	635	ABC transporter ATPase component; Reviewed	99.61
COG1160	444	Predicted GTPases [General function prediction onl	99.61
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.6
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.6
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.59
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.59
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.58
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.58
PRK12298	390	obgE GTPase CgtA; Reviewed	99.57
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.57
cd00881	189	GTP_translation_factor GTP translation factor fami	99.57
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.56
COG3596	296	Predicted GTPase [General function prediction only	99.56
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.55
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.55
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.55
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.55
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.55
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.55
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.55
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.55
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.54
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.54
PRK12299	335	obgE GTPase CgtA; Reviewed	99.54
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.54
PRK03003	472	GTP-binding protein Der; Reviewed	99.54
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.53
PRK11058	426	GTPase HflX; Provisional	99.53
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.53
COG0486	454	ThdF Predicted GTPase [General function prediction	99.53
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.53
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.53
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.52
PRK09866	741	hypothetical protein; Provisional	99.52
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.52
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.52
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.52
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.52
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.52
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.52
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.51
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.51
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.51
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.51
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.51
PRK12297	424	obgE GTPase CgtA; Reviewed	99.51
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.51
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.51
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.5
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.5
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.5
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.5
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.5
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.5
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.5
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.5
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.5
PRK04213	201	GTP-binding protein; Provisional	99.49
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.49
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.49
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.49
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.48
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.48
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.48
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.48
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.48
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.48
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.48
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.48
PRK12296	500	obgE GTPase CgtA; Reviewed	99.48
CHL00071	409	tufA elongation factor Tu	99.48
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.47
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.47
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.47
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.46
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.46
PRK05306	787	infB translation initiation factor IF-2; Validated	99.46
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.46
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.46
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.46
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.46
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.46
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.46
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.46
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.46
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.46
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.46
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.46
PRK12317	425	elongation factor 1-alpha; Reviewed	99.46
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.45
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.45
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.45
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.45
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.45
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.45
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.45
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.45
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.45
PLN03110	216	Rab GTPase; Provisional	99.45
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.45
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.45
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.45
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.44
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.44
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.44
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.44
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.44
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.44
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.44
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.44
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.43
PLN03108	210	Rab family protein; Provisional	99.43
PRK12735	396	elongation factor Tu; Reviewed	99.43
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.43
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.43
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.43
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.43
PTZ00369	189	Ras-like protein; Provisional	99.43
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.43
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.43
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.43
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.43
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.42
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.42
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.42
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.42
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.42
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.42
CHL00189	742	infB translation initiation factor 2; Provisional	99.42
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.42
PLN03118	211	Rab family protein; Provisional	99.42
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.42
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.42
COG2262	411	HflX GTPases [General function prediction only]	99.41
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.41
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.41
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.41
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.41
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.41
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.41
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.41
PRK00049	396	elongation factor Tu; Reviewed	99.4
PRK00007	693	elongation factor G; Reviewed	99.4
PLN00223	181	ADP-ribosylation factor; Provisional	99.4
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.4
PRK12736	394	elongation factor Tu; Reviewed	99.4
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.4
PRK12739	691	elongation factor G; Reviewed	99.4
PTZ00133	182	ADP-ribosylation factor; Provisional	99.4
PLN03127	447	Elongation factor Tu; Provisional	99.4
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.4
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.39
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.39
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.39
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.39
PRK10218	607	GTP-binding protein; Provisional	99.39
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.38
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.38
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.38
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.38
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.38
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.38
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.38
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.38
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.37
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.37
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.37
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.36
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.36
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.36
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.36
PLN03126	478	Elongation factor Tu; Provisional	99.36
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.35
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.35
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.35
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.35
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.35
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.34
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.33
COG2229	187	Predicted GTPase [General function prediction only	99.33
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.32
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.32
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.32
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.32
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.32
PLN00023	334	GTP-binding protein; Provisional	99.31
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.31
PTZ00141	446	elongation factor 1- alpha; Provisional	99.31
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.3
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.29
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.29
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.29
PRK13351	687	elongation factor G; Reviewed	99.29
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.29
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.28
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.28
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.28
PRK05433	600	GTP-binding protein LepA; Provisional	99.27
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.27
PRK04004	586	translation initiation factor IF-2; Validated	99.26
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.26
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.26
PTZ00416	836	elongation factor 2; Provisional	99.26
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.26
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.25
KOG1145	683	consensus Mitochondrial translation initiation fac	99.24
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.24
COG1100	219	GTPase SAR1 and related small G proteins [General	99.24
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.24
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.23
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.23
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.23
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.23
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.22
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.22
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.21
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.21
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.21
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.2
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.19
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.19
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.18
PLN00043	447	elongation factor 1-alpha; Provisional	99.17
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.17
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.17
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.16
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.15
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.15
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.14
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.14
COG0536	369	Obg Predicted GTPase [General function prediction	99.12
PRK11147	635	ABC transporter ATPase component; Reviewed	99.11
PRK07560	731	elongation factor EF-2; Reviewed	99.11
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.11
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.1
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.09
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.09
COG1163	365	DRG Predicted GTPase [General function prediction	99.08
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.08
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.07
PTZ00258	390	GTP-binding protein; Provisional	99.07
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.07
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.07
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.06
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.06
PRK12740	668	elongation factor G; Reviewed	99.06
PRK09601	364	GTP-binding protein YchF; Reviewed	99.06
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.05
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.05
KOG0394	210	consensus Ras-related GTPase [General function pre	99.05
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.04
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.04
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.04
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.03
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.03
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	99.03
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.03
KOG0395	196	consensus Ras-related GTPase [General function pre	99.03
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.02
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.02
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.02
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.02
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.02
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.02
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.01
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.01
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.01
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.01
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.0
PLN03073	718	ABC transporter F family; Provisional	98.99
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.99
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.99
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.99
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.99
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.98
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.98
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.98
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.98
PRK10908	222	cell division protein FtsE; Provisional	98.97
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.97
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.97
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.97
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.96
KOG0062	582	consensus ATPase component of ABC transporters wit	98.96
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.96
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.96
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.96
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.96
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.96
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.95
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.95
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.95
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.95
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.95
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.95
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.95
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.95
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.94
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.94
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.94
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.94
COG4988	559	CydD ABC-type transport system involved in cytochr	98.94
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.94
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.94
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.94
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.93
cd03246	173	ABCC_Protease_Secretion This family represents the	98.93
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.93
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.93
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.93
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.93
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.92
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.92
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.92
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.92
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.92
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.92
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.92
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.91
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.91
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.91
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.91
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.91
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.91
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.9
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.9
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.9
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.9
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.9
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.9
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.89
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.89
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.89
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.89
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.89
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.89
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.89
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.89
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.89
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.89
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.89
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.89
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.88
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.88
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.88
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.88
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.88
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.88
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.88
PRK09602	396	translation-associated GTPase; Reviewed	98.88
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.88
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.87
PLN03073	718	ABC transporter F family; Provisional	98.87
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.87
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.87
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.87
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.86
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.86
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.86
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.86
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.86
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.86
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.86
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.86
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.85
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.85
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.85
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.85
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.85
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.85
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.85
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.85
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.85
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.85
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.84
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.84
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	98.84
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.84
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.84
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.84
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.84
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.83
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	98.83
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.83
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.83
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.83
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.83
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.82
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.82
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.82
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.82
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.82
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.82
PRK12288	347	GTPase RsgA; Reviewed	98.82
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.82
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.81
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.81
COG1162	301	Predicted GTPases [General function prediction onl	98.81
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.81
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.81
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.81
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.81
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.81
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.81
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.81
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.8
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.8
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.8
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.8
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.8
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.8
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.8
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.8
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.8
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.8
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.8
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.8
KOG0090	238	consensus Signal recognition particle receptor, be	98.79
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.79
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.79
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.79
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.79
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.79
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.79
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.79
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.79
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	98.78
PRK13768	253	GTPase; Provisional	98.78
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.78
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.78
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.78
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.78
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.78
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.78
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.78
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.78
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.78
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.78
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.78
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.78
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.77
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.77
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.77
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.77
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.77
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.77
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.76
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.76
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.76
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.76
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.76
PRK00098	298	GTPase RsgA; Reviewed	98.76
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.76

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.96  E-value=3.2e-29  Score=205.92  Aligned_cols=140  Identities=46%  Similarity=0.798  Sum_probs=120.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+||||++|+|+|...|.++.+..++|..+......+ .++.++||||||+.++......+.+++.+++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            4899999999999999999999999988877788898998888877 899999999999999887778888999999998


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~  163 (285)
                      +.+++|++++|++++ +++..++..++.+...||+..|.+++||+|++|.+.+  ..+++|+..
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~  140 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKK  140 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHH
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhc
Confidence            999999999999998 9999999999999999999999999999999999988  668888884

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.95  E-value=2.1e-26  Score=187.34  Aligned_cols=154  Identities=51%  Similarity=0.812  Sum_probs=133.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|+|+|...+.++....++|..+..+...+ .+..++||||||+.++......+..++.+++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            4899999999999999999999998877766778899888888888 789999999999999876667778889888888


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhhcCCchhHhhHHhhhhH
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ  179 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~  179 (285)
                      +.+++|++++|++++ +++..+...++.++..||+..+.++++|+||+|.+..  ..+++|+.. .+          ..+
T Consensus        80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~----------~~l  145 (196)
T cd01852          80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SC----------EAL  145 (196)
T ss_pred             cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-cc----------HHH
Confidence            889999999999998 4999999999999999999888899999999999987  789999885 22          224


Q ss_pred             HHHHHhcCC
Q 023214          180 QFEVDSLKG  188 (285)
Q Consensus       180 ~~~i~~~~g  188 (285)
                      ..+++.+|+
T Consensus       146 ~~l~~~c~~  154 (196)
T cd01852         146 KRLLEKCGG  154 (196)
T ss_pred             HHHHHHhCC
Confidence            556777777

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.86  E-value=2.1e-20  Score=158.45  Aligned_cols=152  Identities=24%  Similarity=0.311  Sum_probs=111.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|.+|+|||||+|+|+|...+..... .+.+..+....... .+..++||||||+.+......... .+.+++.
T Consensus        38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~-~~ik~~l  114 (313)
T TIGR00991        38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-NIIKRFL  114 (313)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHH-HHHHHHh
Confidence            47999999999999999999999886433221 12233333344444 688999999999997533233332 2223322


Q ss_pred             hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhhcCCchhHhhHHh
Q 023214           99 MAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATK  175 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~  175 (285)
                      . ..++|+++||.+.+ .+++..+...++.+...||...|.++++++||+|...+++.++++|+. .++..|+..+..
T Consensus       115 ~-~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~-~~~~~lq~~i~~  190 (313)
T TIGR00991       115 L-GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFS-KRSEALLRVIHS  190 (313)
T ss_pred             h-cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHH-hcHHHHHHHHHH
Confidence            2 24799999997653 378999999999999999999999999999999988666689999998 477777754443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.83  E-value=3e-19  Score=162.82  Aligned_cols=151  Identities=23%  Similarity=0.340  Sum_probs=112.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|+|+|...+.+.....+ |..+....... .+..+.||||||+.++.... .....+..++..
T Consensus       119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik~  195 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSVKK  195 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHHHH
Confidence            6899999999999999999999987766544334 44443333444 68899999999999875432 233344444422


Q ss_pred             c--cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCCh-----hcHHHHhhhcCCchhHh
Q 023214          100 A--KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPLKK  171 (285)
Q Consensus       100 ~--~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~-----~~l~~~l~~~~~~~l~~  171 (285)
                      +  ..++|++|||+..+ .+.+.++...++.+...||..+|.++|||+||+|.+.+++     .++++|+. .+...++.
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~-~rs~~Lq~  274 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVA-QRSHIVQQ  274 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHh-hChHHHHH
Confidence            2  23689999999875 2344467899999999999999999999999999997532     58999998 47776774


Q ss_pred             hHH
Q 023214          172 GAT  174 (285)
Q Consensus       172 ~~~  174 (285)
                      .+.
T Consensus       275 ~Ir  277 (763)
T TIGR00993       275 AIG  277 (763)
T ss_pred             HHH
Confidence            444

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.81  E-value=7.4e-19  Score=147.05  Aligned_cols=131  Identities=28%  Similarity=0.351  Sum_probs=99.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC---cHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG---SEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~   95 (285)
                      ..+|+|+|++|+|||||+|+|+|...+..+. ..+.|..+..+...+ .+..++||||||+.+....   ...+...+.+
T Consensus        31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~  108 (249)
T cd01853          31 SLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSIKR  108 (249)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence            3899999999999999999999988654432 234566666666655 6888999999999976321   1223333433


Q ss_pred             HHhhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      ++..  .++|+++||..++ .+++..+...++.+...||...|.++++|+||+|...++
T Consensus       109 ~l~~--~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         109 YLKK--KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHhc--cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            3322  3578999998764 478888999999999999999999999999999988664

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1159 Era GTPase [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=144.05  Aligned_cols=124  Identities=23%  Similarity=0.339  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|++||++++|||||+|.|+|...  +-.++...|+......+...++..+.++||||+..+   ....++.+.+.+..
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~   81 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS   81 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence            3899999999999999999999998  445666666666666666657888999999999965   56678889999999


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      ++..+|+++||+|+...+..++...++.++..   .  .|+++++||.|...+.
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~---~--~pvil~iNKID~~~~~  130 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT---K--TPVILVVNKIDKVKPK  130 (298)
T ss_pred             HhccCcEEEEEEeccccCCccHHHHHHHHhhc---C--CCeEEEEEccccCCcH
Confidence            99999999999999878999999998888872   1  2999999999988773

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=5.4e-18  Score=148.43  Aligned_cols=149  Identities=25%  Similarity=0.254  Sum_probs=120.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +.|+|||++++|||||+|.|+|+..... ....|+|....|....| .+..+.+|||+|+.+.  +.+.+...+......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence            6899999999999999999999986433 34568999999999999 7888999999999853  345577888888888


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhhcCCchhHhhHHhhhh
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRD  178 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~  178 (285)
                      ++..+|+++||+|+...+++.|.....+++.. + .   |+++|+||+|.... .....+|..-.-+.++.-...+..+
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-~-k---pviLvvNK~D~~~~-e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRRS-K-K---PVILVVNKIDNLKA-EELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C-C---CEEEEEEcccCchh-hhhHHHHHhcCCCCceEeehhhccC
Confidence            88999999999999889999999999988842 2 2   99999999998733 2667777776667666644444433

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.77  E-value=1.8e-16  Score=135.14  Aligned_cols=133  Identities=25%  Similarity=0.341  Sum_probs=92.8

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc----cCC--CCcceeEEEEEEEeeC-C--ceEEEEeCCCCCCCC
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLKD-G--QVVNVIDTPGLFDFS   83 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~----~~~--~~~t~~~~~~~~~~~~-~--~~~~liDtpG~~~~~   83 (285)
                      ....|-..+|+++|++|+|||||+|+|++.......    ...  ...+............ +  .+++++|||||+|+-
T Consensus        17 ~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i   96 (373)
T COG5019          17 LSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI   96 (373)
T ss_pred             HHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc
Confidence            345566799999999999999999999998542221    111  2244444444444422 2  459999999999874


Q ss_pred             CCcHHHHHHHHHHHhhc------------------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEE
Q 023214           84 AGSEFVGKEIVKCIGMA------------------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~  144 (285)
                      . ....+..+..++...                  -..+|++||.+.+ ++.+++-+...+..+...+      |+|.|+
T Consensus        97 d-Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI  169 (373)
T COG5019          97 D-NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVI  169 (373)
T ss_pred             c-ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeee
Confidence            3 344444444443211                  1248999999987 6789999988888776643      999999


Q ss_pred             eCCCCCCC
Q 023214          145 TGGDELED  152 (285)
Q Consensus       145 nk~D~~~~  152 (285)
                      .|.|.++.
T Consensus       170 ~KaD~lT~  177 (373)
T COG5019         170 AKADTLTD  177 (373)
T ss_pred             eccccCCH
Confidence            99999987

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.75  E-value=4.6e-17  Score=121.07  Aligned_cols=116  Identities=22%  Similarity=0.326  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+|+|.+|+|||||+|+|++......+.. .+.|....+....+ .+..+.++||||+.+....... ...+..++...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence            689999999999999999999654333322 45666665555666 7888899999999875322221 12333344443


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk  146 (285)
                       ..+|+++||+++..+.+..+...+..+.  .+    .|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~----~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK--NK----KPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence             7789999999986544555566666663  12    299999997

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK15494 era GTPase Era; Provisional

Probab=99.71  E-value=5.7e-16  Score=135.88  Aligned_cols=147  Identities=20%  Similarity=0.267  Sum_probs=97.0

Q ss_pred             cccCccccCCCCC-----ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 023214            6 IDDDWELTSPSNG-----ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (285)
Q Consensus         6 ~~~~~~~~~~~~~-----~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (285)
                      .....++.+..|.     ..+|+++|++|+|||||+|.|+|...... ....++|.........+ .+..+.++||||+.
T Consensus        34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv-s~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~  111 (339)
T PRK15494         34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV-TPKVQTTRSIITGIITL-KDTQVILYDTPGIF  111 (339)
T ss_pred             cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCceeec-cCCCCCccCcEEEEEEe-CCeEEEEEECCCcC
Confidence            3444556666551     13999999999999999999999875221 11223444433344445 67789999999997


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHH
Q 023214           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDY  160 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~  160 (285)
                      ....   .+...+.+....++.++|++++|+|....++..+..++..+... +.    |.++|+||+|........+.++
T Consensus       112 ~~~~---~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~~----p~IlViNKiDl~~~~~~~~~~~  183 (339)
T PRK15494        112 EPKG---SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-NI----VPIFLLNKIDIESKYLNDIKAF  183 (339)
T ss_pred             CCcc---cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-CC----CEEEEEEhhcCccccHHHHHHH
Confidence            5432   23444555555557889999999998767777776666666543 22    6678999999764322334444


Q ss_pred             hh
Q 023214          161 LG  162 (285)
Q Consensus       161 l~  162 (285)
                      +.
T Consensus       184 l~  185 (339)
T PRK15494        184 LT  185 (339)
T ss_pred             HH
Confidence            43

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.70  E-value=1.5e-16  Score=122.86  Aligned_cols=119  Identities=24%  Similarity=0.320  Sum_probs=82.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|.+++|||||+|+|+|.....  ...+|+|+........+ .+..+.++|+||.++......  .+.+...+.. 
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~~~v--~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~--ee~v~~~~l~-   75 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAKQKV--GNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE--EERVARDYLL-   75 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEE--EESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH--HHHHHHHHHH-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcee--cCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc--HHHHHHHHHh-
Confidence            79999999999999999999999543  33568888888888888 789999999999887644332  1233222222 


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+|++++|+|++ .+.. +...+..+.+. +.    |+++++|++|....
T Consensus        76 ~~~~D~ii~VvDa~-~l~r-~l~l~~ql~e~-g~----P~vvvlN~~D~a~~  120 (156)
T PF02421_consen   76 SEKPDLIIVVVDAT-NLER-NLYLTLQLLEL-GI----PVVVVLNKMDEAER  120 (156)
T ss_dssp             HTSSSEEEEEEEGG-GHHH-HHHHHHHHHHT-TS----SEEEEEETHHHHHH
T ss_pred             hcCCCEEEEECCCC-CHHH-HHHHHHHHHHc-CC----CEEEEEeCHHHHHH
Confidence            46789999999997 4322 23333334433 32    99999999997754

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.70  E-value=5.3e-16  Score=132.32  Aligned_cols=121  Identities=21%  Similarity=0.238  Sum_probs=81.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|++|+|||||+|+|+|....... ...++|... ........+..+.++||||+.+..   ......+.+.+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs-~~~~TTr~~-i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITS-PKAQTTRNR-ISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecC-CCCCcccCc-EEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            7999999999999999999998753221 122334332 223333356679999999997642   22344455555566


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..+|++++|+|++...+.. ...+..+... +    .|+++|+||+|....
T Consensus        77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-~----~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-K----RPVVLTRNKLDNKFK  122 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-C----CCEEEEEECeeCCCH
Confidence            78899999999997555443 4444444432 2    289999999998744

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK00089 era GTPase Era; Reviewed

Probab=99.69  E-value=6.4e-16  Score=133.46  Aligned_cols=122  Identities=23%  Similarity=0.322  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|+|+|++|+|||||+|+|+|......  ++...|............+..++++||||+.++.   ......+......
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~v--s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~   80 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS   80 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeec--CCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence            4899999999999999999999875322  2222233322333323245789999999998643   3344555555556


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++..+|++++|+|+.+.++..+...+..+...   .  .|+++|+||+|...
T Consensus        81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~---~--~pvilVlNKiDl~~  127 (292)
T PRK00089         81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKV---K--TPVILVLNKIDLVK  127 (292)
T ss_pred             HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc---C--CCEEEEEECCcCCC
Confidence            67889999999999866777776666666531   1  28999999999873

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.69  E-value=3e-15  Score=119.92  Aligned_cols=125  Identities=19%  Similarity=0.306  Sum_probs=82.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH---HHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF---VGKEIV   94 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~---~~~~~~   94 (285)
                      ...+|+++|++|+|||||+|.|++......-....+.|..+.++..    +..+.++||||+.........   +...+.
T Consensus        17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----NDGFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----CCcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            3489999999999999999999987521111122345555544332    246899999998754332211   111222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++ .....+|++++|+|+..+++..+...+..+... +    .|+++++||+|....
T Consensus        93 ~~l-~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~~~  144 (179)
T TIGR03598        93 EYL-EKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-G----IPVLIVLTKADKLKK  144 (179)
T ss_pred             HHH-HhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCH
Confidence            222 223456899999999878988888777666542 2    289999999998754

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.68  E-value=2.4e-15  Score=118.79  Aligned_cols=125  Identities=20%  Similarity=0.255  Sum_probs=96.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVGKEIV   94 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~   94 (285)
                      ..+-|+++|++++|||||+|+|+|+.....-+..+|.|....++.+..    .+.+||.||++-.....   +.+...+.
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            348999999999999999999999775434344567888877776533    38899999998655443   23445555


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++... ....++++++|+.+.....|+..++++... +-    |+++++||+|.+..
T Consensus        99 ~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~  150 (200)
T COG0218          99 EYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK  150 (200)
T ss_pred             HHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh
Confidence            555433 236788999999989999999999988875 32    89999999999976

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.68  E-value=2.5e-16  Score=144.10  Aligned_cols=183  Identities=19%  Similarity=0.082  Sum_probs=115.7

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      |+.++|+++++.+..|  .||+|||+||+|||||++.|+|...+..|......+....+..+....+...++.|..-...
T Consensus        14 g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~   91 (530)
T COG0488          14 GDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF   91 (530)
T ss_pred             CCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhh
Confidence            6789999999999999  89999999999999999999999988776655444445555555442222223333111100


Q ss_pred             CCCCcHHHHHHHHHHHh------------------------------hccC--CccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023214           82 FSAGSEFVGKEIVKCIG------------------------------MAKD--GIHAVLVVFSVRSRFSQEEEAALHSLQ  129 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~------------------------------~~~~--~~~~~l~v~~~~~~~~~~~~~~l~~~~  129 (285)
                        .....+..++.....                              ..+.  +....  --+ -..+|++.+.++.+.+
T Consensus        92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~-~~~LSGG~r~Rv~LA~  166 (530)
T COG0488          92 --GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRP-VSSLSGGWRRRVALAR  166 (530)
T ss_pred             --HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCc-hhhcCHHHHHHHHHHH
Confidence              000011111111100                              0000  01111  111 2479999999999999


Q ss_pred             HHhCccccCeEEEE---EeCCCCCCCChhcHHHHhhhcCCchhH---------hhHHhhhhHHH-HHHhcCC-CCHHHHH
Q 023214          130 TLFGKKIFDYMIVV---FTGGDELEDNDETLEDYLGRECPKPLK---------KGATKLRDQQF-EVDSLKG-YSKREIS  195 (285)
Q Consensus       130 ~~~~~~~~~~~iil---~nk~D~~~~~~~~l~~~l~~~~~~~l~---------~~~~~~~~~~~-~i~~~~g-y~~~~~~  195 (285)
                      .+|.++   .++++   +||+|...-  ..+++||..++++.+.         ..+..+-.++. .+..|+| |+.+..+
T Consensus       167 aL~~~p---DlLLLDEPTNHLD~~~i--~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~  241 (530)
T COG0488         167 ALLEEP---DLLLLDEPTNHLDLESI--EWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ  241 (530)
T ss_pred             HHhcCC---CEEEEcCCCcccCHHHH--HHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHH
Confidence            999876   67777   999998887  9999999889995555         22233333333 4666666 8887654


Q ss_pred             H
Q 023214          196 E  196 (285)
Q Consensus       196 ~  196 (285)
                      +
T Consensus       242 r  242 (530)
T COG0488         242 K  242 (530)
T ss_pred             H
Confidence            3

>cd01850 CDC_Septin CDC/Septin

Probab=99.67  E-value=2.8e-15  Score=127.77  Aligned_cols=128  Identities=23%  Similarity=0.288  Sum_probs=84.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEF   88 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~   88 (285)
                      -..+|+++|++|+|||||+|+|++...+.....      ....|........... .+  ..++|+||||+++... ...
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~   81 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSD   81 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chh
Confidence            347999999999999999999999876544221      1233333333322221 33  4699999999998643 233


Q ss_pred             HHHHHHHHHhh----------------c--cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCC
Q 023214           89 VGKEIVKCIGM----------------A--KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (285)
Q Consensus        89 ~~~~~~~~~~~----------------~--~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~  149 (285)
                      .+..+..++..                .  -..+|+++|++++. .+++..+...++.+..    .+  |+++|+||+|.
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~v--~vi~VinK~D~  155 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----RV--NIIPVIAKADT  155 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----cC--CEEEEEECCCc
Confidence            33333322111                1  11479999999985 4677878777777654    22  89999999999


Q ss_pred             CCC
Q 023214          150 LED  152 (285)
Q Consensus       150 ~~~  152 (285)
                      +..
T Consensus       156 l~~  158 (276)
T cd01850         156 LTP  158 (276)
T ss_pred             CCH
Confidence            865

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04163 Era Era subfamily

Probab=99.66  E-value=4.9e-15  Score=116.39  Aligned_cols=122  Identities=23%  Similarity=0.269  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.|+|......... ...+...... .....+..+.++||||+.++....   ...+......
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~~   78 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAWS   78 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEE-EEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHHH
Confidence            6999999999999999999999865322211 1222222222 222245779999999998653221   2223334445


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++.+|++++|+++.+..+......+..+... +    .|+++++||+|...
T Consensus        79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~  125 (168)
T cd04163          79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS-K----TPVILVLNKIDLVK  125 (168)
T ss_pred             HHHhCCEEEEEEECCCccCchHHHHHHHHHHh-C----CCEEEEEEchhccc
Confidence            56788999999999766566565555555443 2    28999999999873

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=3.2e-16  Score=133.02  Aligned_cols=196  Identities=17%  Similarity=0.222  Sum_probs=118.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      +|+++|+.|+|||||+++|+.......                .....+.|.........| .+..++++||||+.++. 
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~-   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT-   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence            589999999999999999973221100                012346777777888888 78899999999986531 


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhc----HHHH
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET----LEDY  160 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~----l~~~  160 (285)
                            .+    ...++..+|++++|+|+...+...+...+..+... +.    |+++++||+|....+...    +.+.
T Consensus        79 ------~~----~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNK~D~~~a~~~~~~~~l~~~  143 (270)
T cd01886          79 ------IE----VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-NV----PRIAFVNKMDRTGADFFRVVEQIREK  143 (270)
T ss_pred             ------HH----HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCCCHHHHHHHHHHH
Confidence                  22    22345667999999999777888887777776553 32    889999999987543222    2222


Q ss_pred             hhhcCCchhH---hhHHhhhhHHHHHHhcCC--CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023214          161 LGRECPKPLK---KGATKLRDQQFEVDSLKG--YSKREIS-ELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEE  234 (285)
Q Consensus       161 l~~~~~~~l~---~~~~~~~~~~~~i~~~~g--y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~  234 (285)
                      +.. ...+..   .....+.++.+++.. ..  |....-. .....++..+.+...+.+.++.+.+.+..++|.++|.+.
T Consensus       144 l~~-~~~~~~~Pisa~~~f~g~vd~~~~-~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~  221 (270)
T cd01886         144 LGA-NPVPLQLPIGEEDDFRGVVDLIEM-KALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEG  221 (270)
T ss_pred             hCC-CceEEEeccccCCCceEEEEcccc-EEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC
Confidence            221 111111   111112222222211 11  2110000 011234555666667777777777888888888888765


Q ss_pred             H
Q 023214          235 Q  235 (285)
Q Consensus       235 ~  235 (285)
                      +
T Consensus       222 ~  222 (270)
T cd01886         222 E  222 (270)
T ss_pred             C
Confidence            5

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01894 EngA1 EngA1 subfamily

Probab=99.66  E-value=1.7e-15  Score=118.27  Aligned_cols=120  Identities=25%  Similarity=0.298  Sum_probs=84.7

Q ss_pred             EEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccC
Q 023214           23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD  102 (285)
Q Consensus        23 ~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (285)
                      +++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.++||||+.+...   .....+.......+.
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            58999999999999999987532221 2234455555555555 677899999999986432   334444444444567


Q ss_pred             CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          103 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       103 ~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+|++++|+|+.++.+..+...+..+... +    .|+++++||+|....
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~  120 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE  120 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh
Confidence            78999999999767776666665665543 2    399999999998765

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.66  E-value=5.4e-15  Score=117.12  Aligned_cols=127  Identities=21%  Similarity=0.223  Sum_probs=82.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|+|++........ ..+.+.......... .+..+.+|||||+.+.................
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            3799999999999999999999876432222 223333333334444 56779999999998653222211111111122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|+.++.+......+..+... +    .|+++++||+|....
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~  128 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE-G----KALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-C----CCEEEEEeccccCCc
Confidence            345678999999999877776665555444332 2    289999999998754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.65  E-value=5.2e-15  Score=115.35  Aligned_cols=121  Identities=26%  Similarity=0.285  Sum_probs=82.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|+|++....... ...+.+.........+ .+..++++||||+.+......   .........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHHH
Confidence            68999999999999999999987642221 1234454444445555 577899999999986532211   111112223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|+..+.+..+...+..   ..+    .|+++++||+|....
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~  122 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPD  122 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCc
Confidence            4567899999999986777766555443   222    289999999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=8.8e-15  Score=125.81  Aligned_cols=147  Identities=21%  Similarity=0.246  Sum_probs=96.7

Q ss_pred             CCcccCc-cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCCcceeEEEEEEEeeC-C--ceEEEE
Q 023214            4 SAIDDDW-ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMQRTVLKD-G--QVVNVI   74 (285)
Q Consensus         4 ~~~~~~~-~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~~-~--~~~~li   74 (285)
                      ..++..+ ...+..|-.++++++|++|.|||||+|+|++......     .......|............ |  -+++|+
T Consensus         5 ~~lP~q~~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~Ltvi   84 (366)
T KOG2655|consen    5 ANLPNQVHRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVI   84 (366)
T ss_pred             ccChHHHHHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEe
Confidence            3444444 2445667779999999999999999999998854221     11111224444444444422 2  459999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhh---------------ccC--CccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccc
Q 023214           75 DTPGLFDFSAGSEFVGKEIVKCIGM---------------AKD--GIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKI  136 (285)
Q Consensus        75 DtpG~~~~~~~~~~~~~~~~~~~~~---------------~~~--~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~  136 (285)
                      ||||++|.... ...+..+..++..               .+.  .+|++||.+.+ ++++++-|...++.+...+    
T Consensus        85 dtPGfGD~vdn-s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v----  159 (366)
T KOG2655|consen   85 DTPGFGDAVDN-SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV----  159 (366)
T ss_pred             ccCCCcccccc-cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc----
Confidence            99999986433 3223333332211               112  58999999998 6669999988887776543    


Q ss_pred             cCeEEEEEeCCCCCCCChhcHHH
Q 023214          137 FDYMIVVFTGGDELEDNDETLED  159 (285)
Q Consensus       137 ~~~~iil~nk~D~~~~~~~~l~~  159 (285)
                        |+|.|+.|+|.++.  ..+..
T Consensus       160 --NiIPVI~KaD~lT~--~El~~  178 (366)
T KOG2655|consen  160 --NLIPVIAKADTLTK--DELNQ  178 (366)
T ss_pred             --cccceeeccccCCH--HHHHH
Confidence              99999999999987  44444

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.65  E-value=6.2e-15  Score=116.64  Aligned_cols=124  Identities=23%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~   98 (285)
                      ++|+++|++|+|||||+|.|++.......  ..+.|..+......+ .+..++++||||+.+....... +...   .+.
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~---~~~   74 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQ---AIT   74 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHH---HHH
Confidence            48999999999999999999987642221  123344444444444 5678999999998653222111 1111   111


Q ss_pred             hccCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFS---QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ......|++++|+|+.++.+   .....++..+...+..   .|+++++||+|....
T Consensus        75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~---~pvilv~NK~Dl~~~  128 (168)
T cd01897          75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKN---KPVIVVLNKIDLLTF  128 (168)
T ss_pred             HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCc---CCeEEEEEccccCch
Confidence            11123589999999965433   2234556666554422   399999999998754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.64  E-value=3.5e-15  Score=127.05  Aligned_cols=136  Identities=23%  Similarity=0.288  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEEEee-C--CceEEEEeCCCCCCCCCCcHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEFV   89 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~liDtpG~~~~~~~~~~~   89 (285)
                      ..+|+|+|.+|+|||||+|+|++.........      ....+........... .  ..+++|+||||+++.. +....
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~   82 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC   82 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence            37999999999999999999999876544310      1112222222222221 2  2459999999999753 33333


Q ss_pred             HHHHHHHHhhc-----------------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           90 GKEIVKCIGMA-----------------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        90 ~~~~~~~~~~~-----------------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +..+..++...                 -..+|++||++++ ++++++.+...++.+...    +  |+|.|+.|+|.++
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccC
Confidence            33343333211                 1247999999998 467999888777766443    3  9999999999998


Q ss_pred             CChhcHHHHhhh
Q 023214          152 DNDETLEDYLGR  163 (285)
Q Consensus       152 ~~~~~l~~~l~~  163 (285)
                      .  +.+..+-..
T Consensus       157 ~--~el~~~k~~  166 (281)
T PF00735_consen  157 P--EELQAFKQR  166 (281)
T ss_dssp             H--HHHHHHHHH
T ss_pred             H--HHHHHHHHH
Confidence            7  677666554

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.64  E-value=6.1e-15  Score=134.09  Aligned_cols=122  Identities=25%  Similarity=0.313  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|++|+|||||+|.|++...... ....++|..+.+....+ .+..+.++||||+...   ...+...+......+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            489999999999999999998764221 22356777777777777 7888999999998642   233445566666666


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..+|++++|+|+..+++..+.....+++.. +    .|+++++||+|....
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~  122 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKE  122 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCcc
Confidence            7889999999999878999888888877763 3    289999999998754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01898 Obg Obg subfamily

Probab=99.64  E-value=5.7e-15  Score=117.04  Aligned_cols=125  Identities=20%  Similarity=0.178  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +|+++|++|+|||||+|+|.+.....+.  ..+.|....+....+ .+. .+.++||||+.+.......+...+.    .
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~--~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~----~   74 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIAD--YPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFL----R   74 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccC--CCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHH----H
Confidence            6899999999999999999986542111  122344444445555 444 8999999998643221111222222    2


Q ss_pred             ccCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|+.++ -+... ..+...+..........|+++|+||+|....
T Consensus        75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  129 (170)
T cd01898          75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE  129 (170)
T ss_pred             HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence            23457999999999744 23222 2344444443211122489999999998655

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.64  E-value=1.1e-14  Score=119.08  Aligned_cols=126  Identities=25%  Similarity=0.207  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|.|++...+..+.  ...|.........+.....+.++||||+.+..  .......+...+ .
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~~~~~~~~~-~  116 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQLVEAFRSTL-E  116 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCC--CHHHHHHHHHHH-H
Confidence            799999999999999999999876432221  22333444444555233489999999986432  122222232222 2


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|+.++.+.... .+...+.......  .|+++|+||+|....
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~  168 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD  168 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh
Confidence            35578999999999766555443 3334444332222  389999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.63  E-value=1.1e-14  Score=132.57  Aligned_cols=132  Identities=22%  Similarity=0.262  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+|+|.+|+|||||+|.|+|....... ...++|....+....+ .+..+.++||||+.+.   .......+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPD---DDGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCc---chhHHHHHHHHHHH
Confidence            58999999999999999999987742222 2345676666777777 6789999999999862   22244455555555


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                      ++..+|++++|+|+.++++..+.....+++.. +    .|+++++||+|.... ...+.++..
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~~-~~~~~~~~~  133 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPDE-EADAYEFYS  133 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCccc-hhhHHHHHh
Confidence            67789999999999878888887777777654 3    289999999996542 144445543

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=7.8e-14  Score=114.27  Aligned_cols=136  Identities=18%  Similarity=0.207  Sum_probs=86.2

Q ss_pred             ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC---CceEEEEeCCCCCCCCCCc
Q 023214           10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGS   86 (285)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~   86 (285)
                      ++-.+..|-..+|+-||.+|.|||||+++|.+...-....+..-+++...........   .-.++|+||.||+|.-..+
T Consensus        33 V~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~  112 (406)
T KOG3859|consen   33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKE  112 (406)
T ss_pred             HHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcc
Confidence            5667788888999999999999999999999876422222222233333333322211   2458999999999864332


Q ss_pred             HHHHHHHHHHH------------------h-hccCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214           87 EFVGKEIVKCI------------------G-MAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (285)
Q Consensus        87 ~~~~~~~~~~~------------------~-~~~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk  146 (285)
                      + ..+.+..++                  . ..-..+|+++|.+.+ ++++...+.-.+..+..    .+  |+|.++.|
T Consensus       113 ~-Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds----kV--NIIPvIAK  185 (406)
T KOG3859|consen  113 D-SYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS----KV--NIIPVIAK  185 (406)
T ss_pred             c-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh----hh--hhHHHHHH
Confidence            1 111111111                  1 112358999999988 55666666555554433    33  89999999


Q ss_pred             CCCCCC
Q 023214          147 GDELED  152 (285)
Q Consensus       147 ~D~~~~  152 (285)
                      .|..+.
T Consensus       186 aDtisK  191 (406)
T KOG3859|consen  186 ADTISK  191 (406)
T ss_pred             hhhhhH
Confidence            998876

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.63  E-value=1.3e-14  Score=133.07  Aligned_cols=124  Identities=26%  Similarity=0.255  Sum_probs=93.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..++|+|||.+|+|||||+|.|++...... ....++|....+....+ .+..+.|+||||+...   ...+...+....
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~  111 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQA  111 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence            347999999999999999999998764322 23456777777777777 7788999999998632   222444555555


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|+.++.+..+..++..+... +    .|+++|+||+|...
T Consensus       112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-~----~piilV~NK~Dl~~  160 (472)
T PRK03003        112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-G----KPVILAANKVDDER  160 (472)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCc
Confidence            5667788999999999878888777777666542 2    29999999999764

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.61  E-value=9.9e-15  Score=118.72  Aligned_cols=118  Identities=21%  Similarity=0.209  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|++|+|||||+|+|+|...+..+....+   +|.....+  .......++++||||+.+.......    +...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~l~l~DtpG~~~~~~~~~~----~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPDD----YLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee--ecCCCCCceEEeCCCCCcccCCHHH----HHHH
Confidence            6899999999999999999999765443333322   12222221  1112457899999999865433222    2222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                        ..+...|++++|.+  .+++..+..++..+... +.    |+++|+||+|....
T Consensus        76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~  122 (197)
T cd04104          76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLS  122 (197)
T ss_pred             --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhh
Confidence              23567788888754  47899999999988875 43    89999999998654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.61  E-value=2.3e-14  Score=117.58  Aligned_cols=116  Identities=14%  Similarity=0.167  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeEEEEEEEeeCCceE
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDGQVV   71 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   71 (285)
                      ||+++|+.|+|||||++.|++.......                             ....+.|.........+ .+..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            6899999999999999999865432110                             00146677776776767 78899


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .|+||||+.++       ...    +..++..+|++++|+|+..+....+...+.++.. ++.+   ++++++||+|...
T Consensus        80 ~liDTpG~~~~-------~~~----~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~---~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQY-------TRN----MVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIR---HVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHHH-------HHH----HHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCC---cEEEEEEchhccc
Confidence            99999997432       111    2233567899999999976776666555555443 2422   6788999999864


Q ss_pred             C
Q 023214          152 D  152 (285)
Q Consensus       152 ~  152 (285)
                      .
T Consensus       145 ~  145 (208)
T cd04166         145 Y  145 (208)
T ss_pred             C
Confidence            3

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.61  E-value=1.8e-14  Score=121.14  Aligned_cols=124  Identities=24%  Similarity=0.242  Sum_probs=91.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .++|++.|.+++|||||+++|++..+-  -.+.+.+|.....++... ++..+.+|||||+.|.....   .+.+....-
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpE--vA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~E---rN~IE~qAi  241 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPE--VAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEE---RNEIERQAI  241 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCc--cCCCCccccceeEeeeec-CCceEEEecCCcccCCChHH---hcHHHHHHH
Confidence            379999999999999999999998862  233345677777788877 77899999999999853221   233333222


Q ss_pred             hccC-CccEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKD-GIHAVLVVFSVR--SRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~-~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++. -.++++|++|++  +.++-++ ...+..++..|. .   |+++|+||+|....
T Consensus       242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~---p~v~V~nK~D~~~~  295 (346)
T COG1084         242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-A---PIVVVINKIDIADE  295 (346)
T ss_pred             HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-C---CeEEEEecccccch
Confidence            2222 247899999984  5577655 567888888887 3   89999999998755

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.61  E-value=2.6e-14  Score=130.15  Aligned_cols=127  Identities=22%  Similarity=0.229  Sum_probs=89.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|+|+|......+. ..+.|.........+ .+..+.++||||+.........+.........
T Consensus       173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        173 PIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            3899999999999999999999887533322 235555554455555 67889999999987654333222211112222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|+..+++..+...+..+... +.    |+++++||+|....
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~~----~~ivv~NK~Dl~~~  299 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLRIAGLALEA-GR----ALVIVVNKWDLVDE  299 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCCCH
Confidence            345678999999999888998888777766553 32    89999999998743

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.61  E-value=4.7e-16  Score=142.34  Aligned_cols=152  Identities=18%  Similarity=0.085  Sum_probs=113.4

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCC
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDF   82 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~   82 (285)
                      ..++.++++.+.+|  .||+|+|+||+|||||++.|+|...+.+|....+.++...|+.+.+.. ....+++|...-..+
T Consensus       335 ~~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~  412 (530)
T COG0488         335 RLLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFP  412 (530)
T ss_pred             ceeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCc
Confidence            47899999999999  899999999999999999999999888887777888999999887722 122233332211111


Q ss_pred             CCCcHHHHHHHHHHHhh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhcHH
Q 023214           83 SAGSEFVGKEIVKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDETLE  158 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l~  158 (285)
                      ...    ...++.++.. -+++.++.--|    ..+|++++.++.+.+.++.++   |++|+   +||+|..+.  +.++
T Consensus       413 ~~~----e~~~r~~L~~f~F~~~~~~~~v----~~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe  479 (530)
T COG0488         413 DGD----EQEVRAYLGRFGFTGEDQEKPV----GVLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALE  479 (530)
T ss_pred             ccc----HHHHHHHHHHcCCChHHHhCch----hhcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHH
Confidence            111    2333333332 24444443333    579999999999999988766   89999   999999988  9999


Q ss_pred             HHhhhcCCchhH
Q 023214          159 DYLGRECPKPLK  170 (285)
Q Consensus       159 ~~l~~~~~~~l~  170 (285)
                      +++..|.|+.+.
T Consensus       480 ~aL~~f~Gtvl~  491 (530)
T COG0488         480 EALLDFEGTVLL  491 (530)
T ss_pred             HHHHhCCCeEEE
Confidence            999999999888

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.61  E-value=2.1e-15  Score=143.04  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=93.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~   81 (285)
                      +.++++++|+.+.+|  .+++|+|+||+|||||+++|+|...+.+|....+....+.|..+... -....++.|...+..
T Consensus       331 ~~~il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~  408 (635)
T PRK11147        331 GKQLVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGK  408 (635)
T ss_pred             CeEEEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhc
Confidence            456899999999999  89999999999999999999998876665443333333333332210 011112222111100


Q ss_pred             CCCCcHHHHHHHHHHHhhc-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhcH
Q 023214           82 FSAGSEFVGKEIVKCIGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDETL  157 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l  157 (285)
                      ...........+...+... +...+.--   .+ ..+|++++.++.+++.++..+   +++|+   +|++|....  ..+
T Consensus       409 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~-~~LSgGekqRl~la~al~~~p---~lLlLDEPt~~LD~~~~--~~l  479 (635)
T PRK11147        409 QEVMVNGRPRHVLGYLQDFLFHPKRAMT---PV-KALSGGERNRLLLARLFLKPS---NLLILDEPTNDLDVETL--ELL  479 (635)
T ss_pred             ccccccchHHHHHHHHHhcCCCHHHHhC---hh-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHH
Confidence            0000000011222222111 11101101   11 479999999999999887665   78888   999998877  888


Q ss_pred             HHHhhhcCCchhH
Q 023214          158 EDYLGRECPKPLK  170 (285)
Q Consensus       158 ~~~l~~~~~~~l~  170 (285)
                      .+++..+.++.+.
T Consensus       480 ~~~l~~~~~tvi~  492 (635)
T PRK11147        480 EELLDSYQGTVLL  492 (635)
T ss_pred             HHHHHhCCCeEEE
Confidence            8998876665444

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.61  E-value=7.6e-15  Score=128.80  Aligned_cols=136  Identities=24%  Similarity=0.279  Sum_probs=99.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|++||.+++|||||+|.|+|+.....+ ...|+|...-....++ +++.+.++||.|+-....-.+.+...-.....
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            489999999999999999999999864432 2356777777777777 89999999999997433222211000001111


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHh
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  161 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l  161 (285)
                      .+...+|++++|+|+..+++..+...+.++.+. |.    +++|++||||....+...++++-
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k  313 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFK  313 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHH
Confidence            334567999999999989999999999988876 43    89999999998875434444443

>cd04171 SelB SelB subfamily

Probab=99.60  E-value=4.4e-14  Score=111.07  Aligned_cols=116  Identities=23%  Similarity=0.350  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc--cccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRA--FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .|+++|++|+|||||+|.|+|...  ++. ....++|....+....+..+..+.+|||||...+           ...+.
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-----------~~~~~   69 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-----------IKNML   69 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChHHH-----------HHHHH
Confidence            689999999999999999997532  111 1123455555555555522678999999996421           11222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+.++|++++|+|+.+.+.......+..+... +.   .|+++++||+|....
T Consensus        70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~~~  119 (164)
T cd04171          70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GI---KRGLVVLTKADLVDE  119 (164)
T ss_pred             hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CC---CcEEEEEECccccCH
Confidence            346688999999999755545555544444332 32   289999999998653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.60  E-value=9.6e-14  Score=112.69  Aligned_cols=125  Identities=17%  Similarity=0.301  Sum_probs=78.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH---H
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI---V   94 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~---~   94 (285)
                      ..++|+++|++|+|||||+|+|++...........+.|..+..+.    .+..+.|+||||+........ ....+   .
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~~~   97 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQKLI   97 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHHHH
Confidence            347999999999999999999998652111122234454443332    246799999999875332221 12222   2


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+.......+++++|+|.+.+.+..+...+..+.. .+    .|++++.||+|....
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~  150 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK  150 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH
Confidence            222222345678888899876777766555555533 22    288999999998765

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.59  E-value=4.1e-14  Score=114.59  Aligned_cols=117  Identities=19%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      .+|+++|+.++|||||+++|++......              .....+.|.........+ .+..++++||||+.+    
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~----   77 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD----   77 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH----
Confidence            6899999999999999999986421000              001346676666665655 678899999999742    


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                             +..........+|++++|+|+.......+...+..+... +.+   ++++++||+|....
T Consensus        78 -------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~  133 (195)
T cd01884          78 -------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD  133 (195)
T ss_pred             -------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc
Confidence                   222233445678999999999877888888888877654 432   47889999998643

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.59  E-value=4.4e-14  Score=128.50  Aligned_cols=124  Identities=21%  Similarity=0.208  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|.+|+|||||+|+|+|....... ...+.|.........+ .+..+.++||||+.........+..........
T Consensus       173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~  250 (429)
T TIGR03594       173 IKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK  250 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence            69999999999999999999987643222 2234555544455555 677899999999976543332222111112223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ++..+|++++|+|+.++++..+...+..+... +    .|+++++||+|..
T Consensus       251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~  296 (429)
T TIGR03594       251 AIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLV  296 (429)
T ss_pred             HHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccC
Confidence            46778999999999888998888777766543 2    2899999999987

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.58  E-value=4.7e-14  Score=124.04  Aligned_cols=126  Identities=24%  Similarity=0.187  Sum_probs=83.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|.+++|||||+|.|+|...+...  ..+.|.......+.+..+..+.++||||+...  .+......+...+ .
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl-e  264 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL-E  264 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH-H
Confidence            79999999999999999999998743222  23345444555566645678999999998431  1222233343332 2


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|++++.+...... ...+... +. ...|+++|+||+|....
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE  316 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh
Confidence            3567899999999976665544333 3334333 31 12389999999998654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.58  E-value=7.1e-14  Score=110.42  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      +.|+++|++|+|||||+|.|++.....  ....+.|...........  .+..++++||||...+           ....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~   67 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR   67 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence            369999999999999999999766422  122344554444444442  3678999999997532           1112


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|+.+.........+..+.. .+    .|+++++||+|....
T Consensus        68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~  117 (168)
T cd01887          68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNA  117 (168)
T ss_pred             HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccc
Confidence            233567899999999976665555555555543 22    289999999997643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.57  E-value=7.3e-14  Score=124.24  Aligned_cols=126  Identities=18%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      -|+|||.++||||||+|+|++.....  .....+|.......+.+..+..++++||||+.........+...+.+    .
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~v--s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKV--ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccc--cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence            79999999999999999999876421  22345666666776666335679999999998643222223444443    3


Q ss_pred             cCCccEEEEEEeCCC---CCC-HHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRS---RFS-QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~---~~~-~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..++++++|+|+..   .-. .....++..+......-...|.++|+||+|....
T Consensus       235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~  290 (390)
T PRK12298        235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE  290 (390)
T ss_pred             HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence            566799999999851   111 1123344444432110012389999999998754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=7.4e-15  Score=139.19  Aligned_cols=155  Identities=16%  Similarity=0.069  Sum_probs=93.3

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGL   79 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~   79 (285)
                      ++..+++++|+.+.+|  .+++|+|+||+|||||+++|+|...+.+|....+....+.|..+....  ....++.+... 
T Consensus       323 ~~~~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~-  399 (638)
T PRK10636        323 GDRIILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLA-  399 (638)
T ss_pred             CCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHH-
Confidence            3456899999999999  899999999999999999999998776654332222233333321100  00001111000 


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhc
Q 023214           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDET  156 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~  156 (285)
                       ..  ........+..++....-..+   .+...-..+|++++.++.+++.+..++   +++|+   +|++|....  ..
T Consensus       400 -~~--~~~~~~~~~~~~L~~~~l~~~---~~~~~~~~LSgGekqRl~La~~l~~~p---~lLlLDEPt~~LD~~~~--~~  468 (638)
T PRK10636        400 -RL--APQELEQKLRDYLGGFGFQGD---KVTEETRRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMR--QA  468 (638)
T ss_pred             -Hh--CchhhHHHHHHHHHHcCCChh---HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HH
Confidence             00  000011122222221110000   011111479999999999999887765   78888   999998877  88


Q ss_pred             HHHHhhhcCCchhH
Q 023214          157 LEDYLGRECPKPLK  170 (285)
Q Consensus       157 l~~~l~~~~~~~l~  170 (285)
                      +.+++..+.++.+.
T Consensus       469 l~~~L~~~~gtvi~  482 (638)
T PRK10636        469 LTEALIDFEGALVV  482 (638)
T ss_pred             HHHHHHHcCCeEEE
Confidence            89988877665444

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.57  E-value=5.9e-14  Score=112.93  Aligned_cols=115  Identities=20%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   86 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~   86 (285)
                      +|+++|.+|+|||||+|.|++.........              ..+.+.........+ .+..+.++||||+.++    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence            589999999999999999998765432210              123444444445555 5678999999997642    


Q ss_pred             HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                         ..    ....++..+|++++|+|+.+..+......+..+.. .+    .|+++++||+|....
T Consensus        76 ---~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~i~iv~nK~D~~~~  129 (189)
T cd00881          76 ---SS----EVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GG----LPIIVAINKIDRVGE  129 (189)
T ss_pred             ---HH----HHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CC----CCeEEEEECCCCcch
Confidence               11    12233457899999999976777666666665554 12    299999999998763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.56  E-value=3.9e-14  Score=112.74  Aligned_cols=122  Identities=19%  Similarity=0.134  Sum_probs=74.0

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccC
Q 023214           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD  102 (285)
Q Consensus        24 lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (285)
                      ++|++|+|||||+|+|++......  ...++|..+......+ . +..+.++||||+.+...........+.    ..+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVA--NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcccc--CCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence            589999999999999999864211  1233455555555555 5 788999999998642221111222222    2245


Q ss_pred             CccEEEEEEeCCCCC------CHHHH-HHHHHHHHHhCc-----cccCeEEEEEeCCCCCCC
Q 023214          103 GIHAVLVVFSVRSRF------SQEEE-AALHSLQTLFGK-----KIFDYMIVVFTGGDELED  152 (285)
Q Consensus       103 ~~~~~l~v~~~~~~~------~~~~~-~~l~~~~~~~~~-----~~~~~~iil~nk~D~~~~  152 (285)
                      ++|++++|+|+.+..      +..+. .+...+......     ....|+++|+||+|....
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~  135 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA  135 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence            689999999996442      22222 222233222110     012499999999998765

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.56  E-value=2e-14  Score=118.14  Aligned_cols=126  Identities=25%  Similarity=0.245  Sum_probs=86.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .++.+|.++|.+|+|||||+|+|++....+.  ...+++.....+ ...+ ++..++|+||||+++....+....+    
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~----  109 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQ----  109 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHH----
Confidence            3447889999999999999999995443222  111222222222 2223 5688999999999985444433333    


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+...++..|.++.+++++++.-.-+..++.-+.-...+.   ++++++|..|...+
T Consensus       110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~---~~i~~VtQ~D~a~p  163 (296)
T COG3596         110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDK---RVLFVVTQADRAEP  163 (296)
T ss_pred             HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCc---eeEEEEehhhhhcc
Confidence            4444567779999999998786666767777666554433   89999999998866

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.55  E-value=2.2e-14  Score=115.81  Aligned_cols=115  Identities=23%  Similarity=0.374  Sum_probs=85.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeEEEEEEE--eeCCceEEEEeCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLF   80 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~--~~~~~~~~liDtpG~~   80 (285)
                      ..+|+++|+.++|||||++.|++.......                ....+.|.........  . .+..++++||||+.
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeeccccccc
Confidence            379999999999999999999965532111                0113556666666666  5 78899999999975


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ++       ...+.    .....+|++++|+|+...+.......+..+... +-    |+++++||+|..
T Consensus        82 ~f-------~~~~~----~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~  135 (188)
T PF00009_consen   82 DF-------IKEMI----RGLRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLI  135 (188)
T ss_dssp             HH-------HHHHH----HHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS
T ss_pred             ce-------eeccc----ceecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccch
Confidence            32       22222    335677999999999878999888888888664 32    899999999988

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01864 Rab19 Rab19 subfamily

Probab=99.55  E-value=1.4e-13  Score=108.58  Aligned_cols=117  Identities=12%  Similarity=0.163  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+.+........  .............+ .+  ..+.++||||...           +....
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~~   69 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence            799999999999999999998655322211  11222222333334 33  4689999999532           11222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|+.++.+... ..++..+.......  .|+++|.||+|....
T Consensus        70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~  123 (165)
T cd01864          70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQ  123 (165)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence            334677899999999975544333 34555555432222  389999999997644

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01866 Rab2 Rab2 subfamily

Probab=99.55  E-value=1.4e-13  Score=109.12  Aligned_cols=117  Identities=15%  Similarity=0.141  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++...........+.+...  ...... ....+.++||||...           +.....
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   71 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMITIDGKQIKLQIWDTAGQES-----------FRSITR   71 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE--EEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            699999999999999999999876433322222222222  222221 134689999999532           122223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|+.++-+-.. ..++..++....+.  .|++++.||.|...
T Consensus        72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~  123 (168)
T cd01866          72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLES  123 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            44678899999999874433332 23444444432222  38999999999864

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04124 RabL2 RabL2 subfamily

Probab=99.55  E-value=7.5e-14  Score=109.84  Aligned_cols=115  Identities=20%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|.+|+|||||++.+++....+......+.+.  ........ ....+.++||||...+.           ....
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~   67 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL--YKHNAKFEGKTILVDFWDTAGQERFQ-----------TMHA   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEE--EEEEEEECCEEEEEEEEeCCCchhhh-----------hhhH
Confidence            3799999999999999999987654222111111111  11122221 13457899999965321           1223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      .++..+|++++|+|++++.+..+ ..++..++.... .  .|++++.||.|..
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~  117 (161)
T cd04124          68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLD  117 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCc
Confidence            44678899999999975555443 345555554422 2  3999999999974

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.55  E-value=1.5e-13  Score=124.36  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=82.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.|++....... ...+.|.......+.+ .+..+.++||||+.++....+..  .+. ....
T Consensus       204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~--gi~-~~~~  278 (442)
T TIGR00450       204 FKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVERL--GIE-KSFK  278 (442)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHHH--HHH-HHHH
Confidence            89999999999999999999987532221 2245566655566666 68889999999997542111111  111 1223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|++++.+..+. ++..+..   ..  .|+++|+||.|....
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKIN  325 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCCc
Confidence            46788999999999877776554 4433322   12  289999999997643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.55  E-value=9e-14  Score=113.64  Aligned_cols=117  Identities=15%  Similarity=0.204  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeEEEEEEEee--------------------------CC-----
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVLK--------------------------DG-----   68 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~--------------------------~~-----   68 (285)
                      +|+++|++|+|||||+.+|++.. ....+....+.+..+.+....+.                          .+     
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            79999999999999999998873 22223334455555555444431                          02     


Q ss_pred             -ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214           69 -QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (285)
Q Consensus        69 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~iil~nk  146 (285)
                       ..+++|||||..+           +...+......+|++++|+|+..+ ........+..+.. .+.   .|+++++||
T Consensus        82 ~~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK  146 (203)
T cd01888          82 VRHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNK  146 (203)
T ss_pred             ccEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEc
Confidence             6799999999532           223333445678999999999743 33444445554433 232   278999999


Q ss_pred             CCCCCC
Q 023214          147 GDELED  152 (285)
Q Consensus       147 ~D~~~~  152 (285)
                      +|....
T Consensus       147 ~Dl~~~  152 (203)
T cd01888         147 IDLVKE  152 (203)
T ss_pred             hhccCH
Confidence            998754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.55  E-value=1.6e-13  Score=131.58  Aligned_cols=123  Identities=24%  Similarity=0.270  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++++|||||+|.|+|...... ....++|....+....+ .+..+.+|||||+....   ..+...+......
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~  350 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQI  350 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHHH
Confidence            6899999999999999999998753222 22356777776766667 67889999999987421   2234455555556


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|+..+++..+..++..++.. +    .|+++|+||+|....
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~  398 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS  398 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc
Confidence            67889999999999878888887777776542 2    299999999997643

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.55  E-value=1.8e-13  Score=109.99  Aligned_cols=131  Identities=22%  Similarity=0.260  Sum_probs=88.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC-----CCCcceeEEEEEEEe-eCC--ceEEEEeCCCCCCCCCCc
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-----SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGS   86 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~   86 (285)
                      ..|-.++|++||.+|.|||||+|++.......++..     +.+.|.......... .++  -+++++|||||+|+-. .
T Consensus        42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-N  120 (336)
T KOG1547|consen   42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-N  120 (336)
T ss_pred             hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-c
Confidence            345568999999999999999999986655332211     122233332222222 123  3489999999998743 3


Q ss_pred             HHHHHHHHHHHhhc----------------cC--CccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214           87 EFVGKEIVKCIGMA----------------KD--GIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (285)
Q Consensus        87 ~~~~~~~~~~~~~~----------------~~--~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~  147 (285)
                      +..|+.+.+++...                .+  .+|+++|.+.+ ++.+.+.+..+++.+.+..      |++.|+.|.
T Consensus       121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIaka  194 (336)
T KOG1547|consen  121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKA  194 (336)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeec
Confidence            33344333333211                11  47999999988 6789999999988887763      899999999


Q ss_pred             CCCCC
Q 023214          148 DELED  152 (285)
Q Consensus       148 D~~~~  152 (285)
                      |.+.-
T Consensus       195 DtlTl  199 (336)
T KOG1547|consen  195 DTLTL  199 (336)
T ss_pred             ccccH
Confidence            98865

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.54  E-value=1e-13  Score=109.53  Aligned_cols=119  Identities=14%  Similarity=0.057  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|++|+|||||++.|++......+.  ....+|.........+ .+..+.++||||..+..           ....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLR-----------SLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhH-----------HHHH
Confidence            58999999999999999998754321111  1223444445555666 67889999999976421           1222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+.++|++++|+|+.+.-+... ...+..+..... ....|+++++||+|....
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA  122 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC
Confidence            34678899999999863322111 122222221100 112499999999997654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.54  E-value=1.5e-13  Score=107.33  Aligned_cols=116  Identities=23%  Similarity=0.301  Sum_probs=75.2

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 023214           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  103 (285)
Q Consensus        24 lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (285)
                      |+|++|+|||||+|.|+|...+..  ...++|..+......+ .+..+.++||||+.++.....  ...+...+... +.
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence            589999999999999999863322  1234555555566666 567899999999976544321  12222222222 68


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +|++++|+|+.+. .. ....+..+.. .+    .|+++++||+|....
T Consensus        75 ~d~vi~v~d~~~~-~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~  116 (158)
T cd01879          75 PDLIVNVVDATNL-ER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK  116 (158)
T ss_pred             CcEEEEEeeCCcc-hh-HHHHHHHHHH-cC----CCEEEEEehhhhccc
Confidence            8999999999632 22 2233333332 12    389999999998654

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.54  E-value=3.2e-13  Score=117.87  Aligned_cols=127  Identities=18%  Similarity=0.157  Sum_probs=82.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|+|||.++||||||+|+|++..+- . .....+|..+....+.+..+..++++||||+.+.......+...+.+    
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~-v-a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flr----  232 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPK-I-ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLK----  232 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCc-c-CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHH----
Confidence            47899999999999999999986532 1 22234566666666666456789999999997533222223333333    


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..++++++|+|+++.-+..+. .+...+......-...|+++|+||+|....
T Consensus       233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~  286 (335)
T PRK12299        233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE  286 (335)
T ss_pred             HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence            34567999999999744333333 333444432111112489999999998654

>cd01861 Rab6 Rab6 subfamily

Probab=99.54  E-value=2.2e-13  Score=106.85  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|++|+|||||++.+++......  ...+.+.........+ .+  ..+.++||||...+           .....
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~-----------~~~~~   67 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERF-----------RSLIP   67 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HHHHH
Confidence            799999999999999999998875332  1222233322333333 33  35899999995421           11222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+..+|++++|+|++++-+... ..++..+....+.  ..|++++.||.|...
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~  119 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD  119 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence            33577899999999975544333 2444444443332  239999999999854

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.54  E-value=1.9e-13  Score=125.40  Aligned_cols=125  Identities=22%  Similarity=0.295  Sum_probs=85.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI-   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-   97 (285)
                      ..+|+++|++|+|||||+|.|++...... ....+.|.........+ .+..+.++||||+.......  ...+....+ 
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~~  286 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASLR  286 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHHH
Confidence            48999999999999999999998864222 12334555444444555 67788999999985321111  111111111 


Q ss_pred             -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 -GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 -~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ..++..+|++++|+|++++.+..+...+..+... +    .|+++|+||+|+...
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-~----~piIiV~NK~Dl~~~  337 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-G----RALVLAFNKWDLVDE  337 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCh
Confidence             2346788999999999888888887766665542 2    289999999998753

>cd04113 Rab4 Rab4 subfamily

Probab=99.53  E-value=1.5e-13  Score=107.94  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=72.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +|+++|++|+|||||++.+++..........  .+............ ...+.++||||...+.           .....
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-----------~~~~~   68 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHT--IGVEFGSKIIRVGGKRVKLQIWDTAGQERFR-----------SVTRS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--eeeeEEEEEEEECCEEEEEEEEECcchHHHH-----------HhHHH
Confidence            7999999999999999999977643221111  11111122223311 2457899999964321           11223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .+..+|++++|+|+.++.+... ..++..++....+..  |++++.||+|...
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~  119 (161)
T cd04113          69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLAD  119 (161)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcch
Confidence            3567899999999975544443 344444444433333  8999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK11058 GTPase HflX; Provisional

Probab=99.53  E-value=2.1e-13  Score=122.75  Aligned_cols=126  Identities=22%  Similarity=0.156  Sum_probs=83.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+|+|.+++|||||+|.|++...+..  ...+.|.......+.+.....+.++||||+...  .+......+...+ .
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl-~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL-Q  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH-H
Confidence            6899999999999999999999875422  223445555555565633458899999998532  1233334444433 3


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|++++.+...... ...+.......  .|+++|+||+|....
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~  324 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD  324 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc
Confidence            4578899999999976655444433 23344332222  389999999998643

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.53  E-value=1.7e-13  Score=114.42  Aligned_cols=115  Identities=19%  Similarity=0.248  Sum_probs=82.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc--c--------------cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKS--R--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      +|+++|+.|+|||||+++|+.......  +              ....+.|.........+ .+..++++||||+.++. 
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~-   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI-   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence            589999999999999999986432110  0              01234555666667777 78899999999997642 


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                            ...    ..++..+|++++|+|+.+.........+..+... +.    |+++++||+|....
T Consensus        79 ------~~~----~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~~----P~iivvNK~D~~~a  131 (237)
T cd04168          79 ------AEV----ERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-NI----PTIIFVNKIDRAGA  131 (237)
T ss_pred             ------HHH----HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECccccCC
Confidence                  122    2234567999999999877877777777766543 32    88999999998753

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.53  E-value=1.8e-13  Score=120.49  Aligned_cols=125  Identities=28%  Similarity=0.363  Sum_probs=93.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (285)
                      ..|  .+++++|++++|||||+|+|+++..... +.-.|+|...-...+.. +|.++.++||.|+-++...-+.++  +.
T Consensus       215 r~G--~kvvIiG~PNvGKSSLLNaL~~~d~AIV-TdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iG--Ie  288 (454)
T COG0486         215 REG--LKVVIIGRPNVGKSSLLNALLGRDRAIV-TDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIG--IE  288 (454)
T ss_pred             hcC--ceEEEECCCCCcHHHHHHHHhcCCceEe-cCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHH--HH
Confidence            445  8999999999999999999999986433 23357787777777777 899999999999986543333322  23


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.. .....+|.++||+|++..++..+...+..+    ...  .|+++|.||.|+...
T Consensus       289 Rs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~----~~~--~~~i~v~NK~DL~~~  339 (454)
T COG0486         289 RAK-KAIEEADLVLFVLDASQPLDKEDLALIELL----PKK--KPIIVVLNKADLVSK  339 (454)
T ss_pred             HHH-HHHHhCCEEEEEEeCCCCCchhhHHHHHhc----ccC--CCEEEEEechhcccc
Confidence            332 335678999999999877788887776611    222  289999999998876

>cd04169 RF3 RF3 subfamily

Probab=99.53  E-value=2.8e-13  Score=114.92  Aligned_cols=116  Identities=18%  Similarity=0.241  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc--cc------------------CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKS--RA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (285)
                      ++|+|+|+.|+|||||++.|+.......  +.                  ...+.+.........+ .+..++++||||+
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~   81 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH   81 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence            6899999999999999999985322111  00                  0124555556667777 7889999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++.       ...    ..++..+|++++|+|+..++.......+..+... +    .|+++++||+|....
T Consensus        82 ~df~-------~~~----~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-~----~P~iivvNK~D~~~a  138 (267)
T cd04169          82 EDFS-------EDT----YRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-G----IPIITFINKLDREGR  138 (267)
T ss_pred             hHHH-------HHH----HHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-C----CCEEEEEECCccCCC
Confidence            7542       111    2234567999999999767776666666554432 2    289999999997655

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04122 Rab14 Rab14 subfamily

Probab=99.53  E-value=3.4e-13  Score=106.54  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .+|+++|+.|+|||||++.+++...... .   ..|....+  ..... .+  ..+.++||||...+           ..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~-~---~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~   66 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD-C---PHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERF-----------RA   66 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC-C---CcccceeEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HH
Confidence            6899999999999999999997753221 1   11222221  22223 22  35789999995421           12


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .....+.++|++++|+|++++-+... ..++..+.....+.  .|++++.||.|....
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~  122 (166)
T cd04122          67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ  122 (166)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence            22334678999999999975544333 23444443332222  489999999997643

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.52  E-value=2.2e-13  Score=107.43  Aligned_cols=117  Identities=19%  Similarity=0.178  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +|+++|++|+|||||++.+++...... . ...+............ ....+.++||||...+        .   .....
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~---~~~~~   68 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSK-Y-LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY--------L---EVRNE   68 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC-C-CCccceeEEEEEEEECCeEEEEEEEECCccHHH--------H---HHHHH
Confidence            799999999999999999998875332 1 1112222212222221 2356889999997431        1   12233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc---cccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK---KIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~---~~~~~~iil~nk~D~~  150 (285)
                      .+.++|++++|+|++++-+... ..++..+.....+   ....|++++.||.|..
T Consensus        69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  123 (168)
T cd04119          69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT  123 (168)
T ss_pred             HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence            4678899999999975543322 3455555554432   1235899999999986

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK09866 hypothetical protein; Provisional

Probab=99.52  E-value=1.6e-11  Score=112.64  Aligned_cols=85  Identities=18%  Similarity=0.265  Sum_probs=58.6

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCC
Q 023214           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (285)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D  148 (285)
                      ..++++||||+..+..  ..+...+..    .+..+|+++||+|+...++..+...+..++.. +...  |+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~~--PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQSV--PLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCCC--CEEEEEEccc
Confidence            5689999999985432  113333333    36678999999999867888888888777664 3212  8999999999


Q ss_pred             CCCCC---hhcHHHHhh
Q 023214          149 ELEDN---DETLEDYLG  162 (285)
Q Consensus       149 ~~~~~---~~~l~~~l~  162 (285)
                      .....   .+.+..++.
T Consensus       301 l~dreeddkE~Lle~V~  317 (741)
T PRK09866        301 QQDRNSDDADQVRALIS  317 (741)
T ss_pred             CCCcccchHHHHHHHHH
Confidence            86421   244555543

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.52  E-value=2.1e-13  Score=123.97  Aligned_cols=120  Identities=27%  Similarity=0.350  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH-HHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE-IVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~   98 (285)
                      .+|+++|++|+|||||+|.|++....... ...+.|.........+ .+..+.++||||+.++.   ..+... +.. ..
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~-~~  289 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIER-SR  289 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHH-HH
Confidence            79999999999999999999987642121 2234555554555556 67889999999987532   111111 222 22


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|++++.+..+...+..    .. .  .|+++|+||+|....
T Consensus       290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~-~--~piiiV~NK~DL~~~  336 (449)
T PRK05291        290 EAIEEADLVLLVLDASEPLTEEDDEILEE----LK-D--KPVIVVLNKADLTGE  336 (449)
T ss_pred             HHHHhCCEEEEEecCCCCCChhHHHHHHh----cC-C--CCcEEEEEhhhcccc
Confidence            34677899999999987777665444332    12 2  289999999998754

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.52  E-value=6.6e-13  Score=104.51  Aligned_cols=121  Identities=21%  Similarity=0.280  Sum_probs=75.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH---Hh
Q 023214           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC---IG   98 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~---~~   98 (285)
                      |+++|++|+|||||+|.|++...........+.|......  .  .+..++++||||+...... ......+...   +.
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~~   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--N--VNDKFRLVDLPGYGYAKVS-KEVKEKWGKLIEEYL   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--E--ccCeEEEecCCCccccccC-HHHHHHHHHHHHHHH
Confidence            7999999999999999999533222212222334333222  2  2338999999998765332 1111222222   11


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ......+.+++++|.....+......+.++... +    .|++++.||+|....
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~  125 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK  125 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh
Confidence            223456788899998756666666666666543 3    289999999998754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.52  E-value=4.3e-13  Score=106.13  Aligned_cols=117  Identities=18%  Similarity=0.175  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++...........+  .......+.... ...+.++||||...+        .   ....
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~g~~~~--------~---~~~~   70 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG--IDFKIRTIELDGKKIKLQIWDTAGQERF--------R---TITT   70 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCcCCcccccCcc--ceEEEEEEEECCEEEEEEEEeCCchHHH--------H---HHHH
Confidence            7999999999999999999997763222111112  222222333311 245889999995432        1   1122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+..+|++++|+|+.++.+-.. ..++..+.......  .|++++.||.|...
T Consensus        71 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~  122 (167)
T cd01867          71 AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEE  122 (167)
T ss_pred             HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            34578899999999975544333 23444444432222  38999999999874

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01865 Rab3 Rab3 subfamily

Probab=99.52  E-value=3.5e-13  Score=106.43  Aligned_cols=118  Identities=12%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++......-.+..+  ........... ....+.++||||...+           .....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~g~~~~-----------~~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--IDFKVKTVFRNDKRVKLQIWDTAGQERY-----------RTITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEECCChHHH-----------HHHHH
Confidence            5899999999999999999998764222111111  11111222221 1246899999996431           11223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+.++|++++|+|..++-+... ..++..+......  ..|++++.||+|....
T Consensus        69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~  121 (165)
T cd01865          69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE  121 (165)
T ss_pred             HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc
Confidence            44788999999999864433322 2344444433222  2389999999997643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd00880 Era_like Era (E

Probab=99.52  E-value=6.6e-13  Score=103.15  Aligned_cols=119  Identities=25%  Similarity=0.237  Sum_probs=77.1

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 023214           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  103 (285)
Q Consensus        24 lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (285)
                      ++|+.|+|||||+|.|++....... ...+.+............+..+.++||||+.++...........    ...+..
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence            5899999999999999987654322 22233444434444442367899999999987654433221222    223466


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +|++++|+++....+............   ..  .|+++++||.|....
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~---~~--~~~ivv~nK~D~~~~  119 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE---RG--KPVLLVLNKIDLLPE  119 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh---cC--CeEEEEEEccccCCh
Confidence            799999999976666555542222221   12  289999999998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd00154 Rab Rab family

Probab=99.52  E-value=2.4e-13  Score=105.79  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEE--Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT--VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|++|+|||||+|.+++........    .|....+...  ... ....+.++|+||...           +...
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~   65 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK----STIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI   65 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccC----CceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence            379999999999999999999877643311    1222222222  221 235688999999642           1112


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ....+..+|++++|+|+.++-+... ..++..+.......  .|++++.||.|..
T Consensus        66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~  118 (159)
T cd00154          66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLE  118 (159)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEccccc
Confidence            3344677899999999974322222 23444444432122  3999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.51  E-value=3.6e-13  Score=105.89  Aligned_cols=117  Identities=21%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||+|++++...........+.+..  .....+. .+..+.++||||...+           .....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~~~-----------~~~~~   68 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQERY-----------RSLAP   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchHHH-----------HHHHH
Confidence            68999999999999999999988753322212221111  1222231 2346889999995321           11122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+.++|++++|+|+.+.-+... ..++..+.......  .|++++.||.|...
T Consensus        69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~  120 (163)
T cd01860          69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLES  120 (163)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence            34567899999999864433222 34445555543233  38999999999763

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.51  E-value=4.7e-13  Score=116.74  Aligned_cols=127  Identities=19%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|+|||.+++|||||+|+|++.....+  ....+|.........+..+..++|+||||+.+.......+...+.+.   
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va--~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh---  232 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIA--DYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH---  232 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH---
Confidence            5789999999999999999998753211  12234555566666663347899999999975332222233343333   


Q ss_pred             ccCCccEEEEEEeCCCC---CCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSR---FSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~---~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       +..++++++|+|+.+.   -...+. .+...+......-...|++||+||+|....
T Consensus       233 -ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       233 -IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             -HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence             3456999999998633   122222 233333332111122489999999998654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04154 Arl2 Arl2 subfamily

Probab=99.51  E-value=4.2e-13  Score=106.84  Aligned_cols=115  Identities=14%  Similarity=0.181  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.|++... .. .   ..|.........+ .+..+.++||||...+           ......
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~~~-~~-~---~~t~g~~~~~~~~-~~~~l~l~D~~G~~~~-----------~~~~~~   77 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGEDI-DT-I---SPTLGFQIKTLEY-EGYKLNIWDVGGQKTL-----------RPYWRN   77 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCC-CC-c---CCccccceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence            6999999999999999999998743 11 1   1222223334444 5678999999996532           112233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|+.++-+... ..++..+... ......|++++.||.|....
T Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~  130 (173)
T cd04154          78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGA  130 (173)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccC
Confidence            4678899999999975433222 1222222211 00112499999999997643

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.51  E-value=7.2e-14  Score=119.13  Aligned_cols=115  Identities=24%  Similarity=0.292  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc--ccC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKS--RAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      +|+|+|++|+|||||++.|++......  +..              ..+.+.........+ .+..++++||||..++  
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f--   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF--   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence            589999999999999999985432111  100              113344444555666 6788999999997642  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                           .....    .++..+|++++|+++...........+..+... +    .|.++++||+|....
T Consensus        78 -----~~~~~----~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~~  131 (268)
T cd04170          78 -----VGETR----AALRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRERA  131 (268)
T ss_pred             -----HHHHH----HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCCC
Confidence                 12222    234567999999999767777666666655432 3    289999999998765

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04142 RRP22 RRP22 subfamily

Probab=99.51  E-value=3.2e-13  Score=109.90  Aligned_cols=125  Identities=17%  Similarity=0.156  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+|+|.+|+|||||++.+++... +.... ...+.........+ .+  ..+.++||||...+....   ..+......
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~-pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~~~~   75 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYI-PTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTA---GQEWMDPRF   75 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCC-CcccC-CccccccceeEEEE-CCEEEEEEEEeCCCcccCCccc---hhHHHHHHH
Confidence            799999999999999999997653 22221 11111111122333 44  457899999987543221   222222222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-ccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|++++-+... ..++..+..... .....|++++.||+|...
T Consensus        76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence            34678999999999975544443 233444444321 112349999999999854

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.51  E-value=6.7e-13  Score=118.84  Aligned_cols=124  Identities=19%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      .|+|||.++||||||+|+|++..+- . .....+|..+....+.+..+..++|+||||+.........+...+.+.    
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k-I-a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrh----  233 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK-I-ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRH----  233 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc-c-ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHH----
Confidence            8999999999999999999987632 1 223445667777767663378899999999975322222233343333    


Q ss_pred             cCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          101 KDGIHAVLVVFSVRSR---FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ...++++++|+|+++.   -...+ ..+...+......-...|.+||+||+|+.
T Consensus       234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~  287 (424)
T PRK12297        234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP  287 (424)
T ss_pred             HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence            3456999999999532   11122 23334444331111234999999999964

>cd04140 ARHI_like ARHI subfamily

Probab=99.51  E-value=2.7e-13  Score=107.02  Aligned_cols=119  Identities=22%  Similarity=0.185  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.+++...... ..+.............. ....+.++||||...+..        +   ...
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~--------~---~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK-NICTLQITDTTGSHQFPA--------M---QRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC-EEEEEEEEECCCCCcchH--------H---HHH
Confidence            6899999999999999999997663222 11111111111111111 234588999999865321        1   122


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcc-ccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~iil~nk~D~~~  151 (285)
                      ++..+|++++|+|++++-+... ..++..+....+.. ...|+++|.||.|...
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            3567899999999976655543 44556666554321 2349999999999764

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.51  E-value=5e-13  Score=108.46  Aligned_cols=116  Identities=18%  Similarity=0.280  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc-cccccc-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      ++|+++|++|+|||||++.+++.. .+....             ...+.+.........+ .+..+.++||||..++.  
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~--   79 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFG--   79 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHH--
Confidence            699999999999999999999631 221111             1134444444455555 67889999999976431  


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                               .....++..+|++++|+|+.++........+..+..   ..  .|+++++||+|....
T Consensus        80 ---------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~  132 (194)
T cd01891          80 ---------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA  132 (194)
T ss_pred             ---------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence                     122234667899999999975554444444443322   12  289999999998643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.50  E-value=5e-13  Score=106.07  Aligned_cols=118  Identities=19%  Similarity=0.158  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++...... .. .............+ .+  ..+.++||||..++.       ..   ..
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~-~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------~~---~~   69 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPER-TE-ATIGVDFRERTVEI-DGERIKVQLWDTAGQERFR-------KS---MV   69 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCc-cc-cceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHH-------Hh---hH
Confidence            6899999999999999999987653221 11 11111122223333 33  568999999965321       11   12


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|++++-+.... .++..+.... .....|++++.||.|...
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~  123 (170)
T cd04115          70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE  123 (170)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence            3346788999999999756554443 3344444432 112349999999999754

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.50  E-value=9.1e-14  Score=110.07  Aligned_cols=115  Identities=18%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-cee-------------------------------------------
Q 023214           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TST-------------------------------------------   57 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~-t~~-------------------------------------------   57 (285)
                      |+++|..++|||||+|+|+|....+.+..+... ...                                           
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            789999999999999999999866655433210 000                                           


Q ss_pred             ---------EEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 023214           58 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSL  128 (285)
Q Consensus        58 ---------~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~  128 (285)
                               .............+.|+||||+.+.......       .+..+++.+|++++|+++...++..+...+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~-------~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~  153 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE-------ITEEYLPKADVVIFVVDANQDLTESDMEFLKQM  153 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH-------HHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHH-------HHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence                     0111111112445899999999764333322       222334678999999999867777766666555


Q ss_pred             HHHhCccccCeEEEEEeCC
Q 023214          129 QTLFGKKIFDYMIVVFTGG  147 (285)
Q Consensus       129 ~~~~~~~~~~~~iil~nk~  147 (285)
                      .....    .++++|+||+
T Consensus       154 ~~~~~----~~~i~V~nk~  168 (168)
T PF00350_consen  154 LDPDK----SRTIFVLNKA  168 (168)
T ss_dssp             HTTTC----SSEEEEEE-G
T ss_pred             hcCCC----CeEEEEEcCC
Confidence            54322    2688889984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.50  E-value=7.9e-13  Score=104.68  Aligned_cols=114  Identities=18%  Similarity=0.145  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|++|+|||||++.+.+.  +.....   +|.......... .+..+.++||||...+           ......+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE--IPKKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGANF-----------RGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC--CCcccc---CcccceEEEEEE-CCEEEEEEECCCcHHH-----------HHHHHHH
Confidence            4899999999999999999987  222221   222222333444 5778999999996421           1223345


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..+|+++||+|+.++-+..+ ..++..+.... .....|++||.||.|....
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~  115 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNA  115 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCC
Confidence            678899999999974433322 22333332211 1123499999999998654

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=3e-13  Score=105.54  Aligned_cols=118  Identities=17%  Similarity=0.210  Sum_probs=87.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+|+|.+|+|||.|+..+.+...+.+-.+..|+...  ...+++. ....+.||||.|..           +++..+.
T Consensus        10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~--~rt~e~~gk~iKlQIWDTAGQE-----------RFrtit~   76 (205)
T KOG0084|consen   10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFK--IRTVELDGKTIKLQIWDTAGQE-----------RFRTITS   76 (205)
T ss_pred             EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEE--EEEeeecceEEEEEeeeccccH-----------HHhhhhH
Confidence            79999999999999999999987764443444444433  4444441 23469999999964           3445666


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+|+++|++|+|+|++..-|-.. ..|+..+.......+  |.++|.||+|..+.
T Consensus        77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~  129 (205)
T KOG0084|consen   77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK  129 (205)
T ss_pred             hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh
Confidence            78999999999999986666555 466777777666655  89999999998754

>cd01889 SelB_euk SelB subfamily

Probab=99.50  E-value=4.8e-13  Score=108.37  Aligned_cols=116  Identities=17%  Similarity=0.263  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc---ccccc--cCCCCcceeEEEEEEEee-------------CCceEEEEeCCCCCCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR---AFKSR--ASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFDF   82 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~---~~~~~--~~~~~~t~~~~~~~~~~~-------------~~~~~~liDtpG~~~~   82 (285)
                      +|+++|+.|+|||||++.+++..   .+...  ....+.|.........+.             .+..++++||||+.+ 
T Consensus         2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-   80 (192)
T cd01889           2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS-   80 (192)
T ss_pred             eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence            79999999999999999999731   11110  112244555554444441             256799999999732 


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                            ...    .+......+|++++|+|+....+..+...+.... ..+    .|+++++||+|....
T Consensus        81 ------~~~----~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~----~~~iiv~NK~Dl~~~  135 (192)
T cd01889          81 ------LIR----TIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILC----KKLIVVLNKIDLIPE  135 (192)
T ss_pred             ------HHH----HHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcC----CCEEEEEECcccCCH
Confidence                  112    2223345679999999997666665554444332 223    289999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01863 Rab18 Rab18 subfamily

Probab=99.50  E-value=4.3e-13  Score=105.30  Aligned_cols=117  Identities=20%  Similarity=0.171  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +|+++|++|+|||||++.+++...........+.+..  .....+. ....+.++||||...+.           .....
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~   68 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFK--VKTLTVDGKKVKLAIWDTAGQERFR-----------TLTSS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEE--EEEEEECCEEEEEEEEECCCchhhh-----------hhhHH
Confidence            7999999999999999999987643221212222221  2222231 13468999999965321           11123


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .+..+|++++|+|+.++-+.... .++..+..... ....|++++.||.|...
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~  120 (161)
T cd01863          69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKEN  120 (161)
T ss_pred             HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccc
Confidence            35678999999998755443332 33444444422 22348999999999873

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00053 DYNc Dynamin, GTPase

Probab=99.50  E-value=1.7e-12  Score=107.70  Aligned_cols=137  Identities=17%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC--CC---------------------------------------------
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SS---------------------------------------------   52 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~--~~---------------------------------------------   52 (285)
                      +.|+++|++|+||||++++|+|...++.+..  ..                                             
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~  106 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT  106 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999853332211  10                                             


Q ss_pred             --CcceeEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCC-ccEEEEEEeCCCCCCHHH-HHHHH
Q 023214           53 --GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEE-EAALH  126 (285)
Q Consensus        53 --~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~~~~~~~~-~~~l~  126 (285)
                        +.+..+-...+..+....++||||||+.....  ........+...+..++.. .+.+++|+++...++..+ ....+
T Consensus       107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~  186 (240)
T smart00053      107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK  186 (240)
T ss_pred             CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence              00000001111112236799999999974321  1233445555555555553 458889999876677655 34444


Q ss_pred             HHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214          127 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       127 ~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                      .+...     ..++++|+||.|..... ..+.+.+.
T Consensus       187 ~ld~~-----~~rti~ViTK~D~~~~~-~~~~~~~~  216 (240)
T smart00053      187 EVDPQ-----GERTIGVITKLDLMDEG-TDARDILE  216 (240)
T ss_pred             HHHHc-----CCcEEEEEECCCCCCcc-HHHHHHHh
Confidence            44332     23899999999988653 22444444

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.50  E-value=3.6e-13  Score=105.97  Aligned_cols=118  Identities=25%  Similarity=0.243  Sum_probs=71.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||++.+++.... ....+. .. ......... .+  ..+.++||||..++..           .
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t-~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~   66 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TDYDPT-IE-DSYTKQCEI-DGQWAILDILDTAGQEEFSA-----------M   66 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-cccCCC-cc-ceEEEEEEE-CCEEEEEEEEECCCCcchhH-----------H
Confidence            369999999999999999999976532 222111 11 111112223 33  4588999999764321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....+.++|++++|+|+.+.-+... ..++..+..... ....|++++.||+|....
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ  122 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc
Confidence            2233567899999999975443333 233333333322 122389999999997643

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.50  E-value=5.1e-13  Score=105.49  Aligned_cols=117  Identities=20%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++......  ...+.+.......... .+  ..+.++||||...+           ....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-----------~~~~   68 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERF-----------RTIT   68 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHHH
Confidence            6899999999999999999997654221  1112222222233333 33  35889999995432           1112


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|++++-+... ..++..+.......  .|++++.||.|....
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~  122 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDK  122 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccc
Confidence            234678899999999975433332 23444444432222  389999999997543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PRK04213 GTP-binding protein; Provisional

Probab=99.49  E-value=1.4e-12  Score=106.33  Aligned_cols=122  Identities=23%  Similarity=0.245  Sum_probs=73.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH---
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~---   95 (285)
                      ..+|+++|++|+|||||+|.|+|... ..+. ..++|....  ...+  + .+.++||||++............+..   
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~-~~~~t~~~~--~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKV-RVGK-RPGVTRKPN--HYDW--G-DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC-ccCC-CCceeeCce--EEee--c-ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            37999999999999999999998763 3322 224444322  2222  2 68999999986544433222233332   


Q ss_pred             -HHhhccCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 -CIGMAKDGIHAVLVVFSVRSRFS-----------QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 -~~~~~~~~~~~~l~v~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ++......++++++|+|......           ..+...+..+..   ..  .|+++|+||+|....
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~p~iiv~NK~Dl~~~  145 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LG--IPPIVAVNKMDKIKN  145 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cC--CCeEEEEECccccCc
Confidence             22223455788999999853211           122233333332   12  289999999997654

>cd01868 Rab11_like Rab11-like

Probab=99.49  E-value=5.7e-13  Score=105.07  Aligned_cols=116  Identities=19%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++...... . ....+.......... .+  ..+.++||||...           +....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~   69 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-S-KSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC-C-CCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence            6899999999999999999997764211 1 122222222333333 33  3588999999542           11112


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..++++++|+|+.++.+... ..++..+.......  .|++++.||.|...
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~  122 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRH  122 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence            233567899999999975444433 23444454443222  38999999999754

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.49  E-value=5.3e-13  Score=104.90  Aligned_cols=116  Identities=20%  Similarity=0.229  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++......  .....+.......... .+  ..+.++||||...+           ....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERF-----------RSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHH
Confidence            3799999999999999999998764222  1112222222233333 33  46889999995421           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|+.++.+.... .++..+.....+.  .|++++.||.|...
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~  119 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLED  119 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhccc
Confidence            2335678999999999754444332 3344444332222  39999999999764

Rab GTPases are implicated in vesicle trafficking.

>cd04155 Arl3 Arl3 subfamily

Probab=99.49  E-value=1.2e-12  Score=104.01  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||++.|.+......     ..|....+....+ .+..+.++||||...           +...+.
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~~   76 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYWR   76 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence            48999999999999999999998753211     1122222334445 577899999999642           112233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|+.+..+... ...+..+..... ....|+++++||.|....
T Consensus        77 ~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~  130 (173)
T cd04155          77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA  130 (173)
T ss_pred             HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC
Confidence            34577899999999864322211 122222211100 112389999999998654

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.48  E-value=9.3e-13  Score=126.39  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=86.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI-   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-   97 (285)
                      ..+|+++|++|+|||||+|+|++....... ...++|.........+ .+..+.++||||+.......  ...+....+ 
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~r  525 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSLR  525 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHHH
Confidence            379999999999999999999988642111 1234455444444555 67789999999986432221  111221111 


Q ss_pred             -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 -GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 -~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ..++..+|++++|+|++++.+..+...+..+... +    .|+++|+||+|+...
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~  576 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDE  576 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCCh
Confidence             2346788999999999888888887776665442 2    289999999998754

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.48  E-value=1.1e-12  Score=103.08  Aligned_cols=114  Identities=24%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      +|+++|++|+|||||++.+++.... ...   ..|....+  ....+.   ....+.++||||...+           ..
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----------~~   66 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFT-KDY---KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-----------DA   66 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC-CCC---CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-----------HH
Confidence            7999999999999999999976532 211   12222222  222221   2356899999995421           11


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....++..+|++++|+++.++-+... ..++..+..... .  .|++++.||.|....
T Consensus        67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~  121 (162)
T cd04106          67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQ  121 (162)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccc
Confidence            22334678899999999874433333 233334433322 2  399999999998653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04157 Arl6 Arl6 subfamily

Probab=99.48  E-value=8e-13  Score=103.74  Aligned_cols=117  Identities=14%  Similarity=0.084  Sum_probs=72.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|++|+|||||++.+++...+.....   +|.......... .+..+.++||||...+.           .....+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGKYR-----------GLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHhhH-----------HHHHHH
Confidence            589999999999999999998653222211   122222222333 56789999999975321           122234


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-ccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~iil~nk~D~~~~  152 (285)
                      +.++|++++|+|+.++.+... ...+..+..... .....|+++++||.|....
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence            678899999999975543322 223333322110 0112499999999998654

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.48  E-value=5.4e-13  Score=105.54  Aligned_cols=113  Identities=21%  Similarity=0.164  Sum_probs=72.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      +|+++|++|+|||||++.++..... ..   ..+|....+....+.   ....+.++||||...+....           
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----------   66 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR-----------   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC-CC---CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc-----------
Confidence            7999999999999999999855421 11   122333333332221   23468899999986542211           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|++++-+... ..++..+....+   ..|++++.||+|...
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~  118 (166)
T cd00877          67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKD  118 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhccc
Confidence            123568899999999975544433 234555555433   239999999999763

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.48  E-value=8.7e-13  Score=102.71  Aligned_cols=114  Identities=21%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 023214           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (285)
                      |+++|++|+|||||+|.|++...... .   .+|.......... ++..+.++||||...+           ......++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~-~---~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----------~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSED-T---IPTVGFNMRKVTK-GNVTLKVWDLGGQPRF-----------RSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcC-c---cCCCCcceEEEEE-CCEEEEEEECCCCHhH-----------HHHHHHHH
Confidence            78999999999999999998764222 1   1232333333444 4577999999996431           11222345


Q ss_pred             CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       102 ~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+|++++|+|+.+..+... ...+..+..... ....|+++++||.|....
T Consensus        66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~  116 (159)
T cd04159          66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA  116 (159)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC
Confidence            67899999999863322111 112222211100 112389999999997654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04112 Rab26 Rab26 subfamily

Probab=99.48  E-value=7.6e-13  Score=107.13  Aligned_cols=117  Identities=16%  Similarity=0.180  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++........ ..+............ .  ...+.|+||||...+           ....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~   67 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERF-----------RSVT   67 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHhh
Confidence            379999999999999999998766422111 111111111111222 2  245889999995321           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|+.++-+... ..++..+.......  .|++++.||.|+..
T Consensus        68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~  120 (191)
T cd04112          68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSG  120 (191)
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchh
Confidence            234678899999999975544332 34555555543323  38999999999753

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=99.48  E-value=6.2e-13  Score=104.49  Aligned_cols=116  Identities=19%  Similarity=0.212  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++.... ....+.  +.......+.. .+  ..+.++||||...+..           ..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPT--IEDSYRKQIEV-DGQQCMLEILDTAGTEQFTA-----------MR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCc--hhhhEEEEEEE-CCEEEEEEEEECCCccccch-----------HH
Confidence            68999999999999999999976532 211111  11111122223 33  4577899999765321           11


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++.++|++++|+|++++-+... ..++..+..... ....|++++.||.|...
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  120 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED  120 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            233677899999999975544333 233444444322 12348999999999754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04123 Rab21 Rab21 subfamily

Probab=99.48  E-value=9.4e-13  Score=103.16  Aligned_cols=116  Identities=14%  Similarity=0.112  Sum_probs=71.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +|+++|++|+|||||+|.+++.......  ....+.........+. ....+.++||||...+        ..   ....
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~---~~~~   68 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--------HA---LGPI   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHHH--------HH---hhHH
Confidence            7999999999999999999977643221  1111112222223221 1235889999995422        11   1222


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .+..+|++++|+|+.++-+.... .++..+......  ..|+++++||.|...
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~  119 (162)
T cd04123          69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER  119 (162)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            35678999999998644433332 333444444333  238999999999774

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.48  E-value=1.5e-12  Score=118.07  Aligned_cols=126  Identities=16%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      -.|+|||.++||||||+|.|++.....  ....++|.......+.+ .+..++|+||||+.........+...+.+    
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLr----  232 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLR----  232 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHH----
Confidence            579999999999999999999876422  22245566666666666 67789999999997532222223333333    


Q ss_pred             ccCCccEEEEEEeCCCCC----CHHHHH-HHHHHHHHhC---------ccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRF----SQEEEA-ALHSLQTLFG---------KKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~----~~~~~~-~l~~~~~~~~---------~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|+++.-    ...+.. +...+.....         .-...|+|||+||+|....
T Consensus       233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da  299 (500)
T PRK12296        233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA  299 (500)
T ss_pred             HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence            345679999999986311    111222 1222222211         1112499999999998644

>CHL00071 tufA elongation factor Tu

Probab=99.48  E-value=6.7e-13  Score=119.55  Aligned_cols=119  Identities=17%  Similarity=0.229  Sum_probs=84.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      +..+|+++|+.++|||||+++|++......+              ....+.|.........+ .+..++++||||+.+  
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~--   87 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD--   87 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH--
Confidence            3489999999999999999999975321110              01246666665555555 577899999999642  


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                               +...+......+|++++|+|+...+...+...+..+... +.+   ++++++||+|....
T Consensus        88 ---------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~~---~iIvvvNK~D~~~~  143 (409)
T CHL00071         88 ---------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GVP---NIVVFLNKEDQVDD  143 (409)
T ss_pred             ---------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEccCCCCH
Confidence                     122222334577999999999877888888888776654 432   47788999998754

>cd04158 ARD1 ARD1 subfamily

Probab=99.47  E-value=1.1e-12  Score=104.07  Aligned_cols=114  Identities=16%  Similarity=0.064  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|..|+|||||++.+.+... ..    ..+|....+....+ .+..+.++||||...+..           ....+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~~-----------~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLRP-----------LWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEEEE-CCEEEEEEECCCChhcch-----------HHHHH
Confidence            589999999999999999998642 21    22343333444445 577899999999764311           12233


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.++|++++|+|.+++-+..+ ..++..+..... ....|++|+.||.|....
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  115 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA  115 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC
Confidence            677899999999974433222 222332322111 111389999999997543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00879 Sar1 Sar1 subfamily

Probab=99.47  E-value=1.4e-12  Score=105.38  Aligned_cols=114  Identities=10%  Similarity=0.005  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.+.+.....  .   .+|.......+.+ .+..+.++||||...+           ......
T Consensus        20 ~ki~ilG~~~~GKStLi~~l~~~~~~~--~---~~T~~~~~~~i~~-~~~~~~l~D~~G~~~~-----------~~~~~~   82 (190)
T cd00879          20 AKILFLGLDNAGKTTLLHMLKDDRLAQ--H---VPTLHPTSEELTI-GNIKFKTFDLGGHEQA-----------RRLWKD   82 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc--c---CCccCcceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence            699999999999999999999865421  1   1122223344555 5778999999996431           112233


Q ss_pred             ccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +++++|++++|+|+.+.-+.. ....+..+... ......|++++.||.|...
T Consensus        83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~  134 (190)
T cd00879          83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPG  134 (190)
T ss_pred             HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCC
Confidence            467889999999986432221 12222222221 1112249999999999763

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.47  E-value=1.6e-12  Score=121.09  Aligned_cols=124  Identities=19%  Similarity=0.298  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+++|+.++|||||++.|.+......  ...+.|.....+...+..+..++++||||+.++..           ....
T Consensus        88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-----------~r~r  154 (587)
T TIGR00487        88 PVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-----------MRAR  154 (587)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchhh-----------HHHh
Confidence            7999999999999999999998764322  22456767666666663344899999999876521           1123


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHh
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  161 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l  161 (285)
                      .+..+|++++|+++.+...+.....+..+... +  .  |+++++||+|....+.+.+...+
T Consensus       155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~-~--v--PiIVviNKiDl~~~~~e~v~~~L  211 (587)
T TIGR00487       155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKAA-N--V--PIIVAINKIDKPEANPDRVKQEL  211 (587)
T ss_pred             hhccCCEEEEEEECCCCCCHhHHHHHHHHHHc-C--C--CEEEEEECcccccCCHHHHHHHH
Confidence            45678999999999767777776666554432 2  2  89999999998654323344443

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.46  E-value=9.2e-13  Score=103.22  Aligned_cols=116  Identities=22%  Similarity=0.226  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|++|+|||||+|.+++.... ....+   |.... ...... .+  ..+.++||||...+.        .   .
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~---l   65 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDP---TIEDSYRKQVVI-DGETCLLDILDTAGQEEYS--------A---M   65 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCC---cchheEEEEEEE-CCEEEEEEEEECCCCcchH--------H---H
Confidence            58999999999999999999976532 22211   11111 112222 33  347789999975421        1   1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++.++|++++|++..++-+..+. .++..+..... ....|++++.||.|....
T Consensus        66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~  121 (162)
T cd04138          66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR  121 (162)
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            12235678999999998744333332 33344443321 122389999999997653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.46  E-value=1.1e-12  Score=102.73  Aligned_cols=114  Identities=14%  Similarity=0.074  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|+.|+|||||++.+++... ..    ...|.........+ .+..+.++||||....           .......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VT----TIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CC----CCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence            589999999999999999998862 22    12233333344444 5678999999997642           1122234


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..+|++++|+|+.++-+... ...+..+..... ....|++++.||+|....
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~  115 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA  115 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence            567899999999974322221 222222222111 112399999999998764

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.46  E-value=8.8e-13  Score=125.84  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+++|+.++|||||++.|.+......  ...+.|.....+.+.+ .+..++||||||+.++..           ....
T Consensus       291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~-----------m~~r  356 (787)
T PRK05306        291 PVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTA-----------MRAR  356 (787)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccchh-----------HHHh
Confidence            7999999999999999999987654322  2345677777777777 678899999999886521           1112


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+++.++........+..+... +  +  |+||++||+|....
T Consensus       357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~~-~--v--PiIVviNKiDl~~a  404 (787)
T PRK05306        357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKAA-G--V--PIIVAINKIDKPGA  404 (787)
T ss_pred             hhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc-C--C--cEEEEEECcccccc
Confidence            34567999999999877777777776655442 2  2  89999999998653

>cd04110 Rab35 Rab35 subfamily

Probab=99.46  E-value=1.7e-12  Score=105.72  Aligned_cols=118  Identities=18%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+++|++|+|||||++.+++...... .. .+.........+.+.+ ...+.|+||||...+.           ...
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-----------~~~   72 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGS-YI-TTIGVDFKIRTVEINGERVKLQIWDTAGQERFR-----------TIT   72 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCC-cC-ccccceeEEEEEEECCEEEEEEEEeCCCchhHH-----------HHH
Confidence            37999999999999999999997653211 11 1111111122222311 2457899999964321           112


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|++++-+... ..++..+.....   ..|++|+.||.|....
T Consensus        73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~  125 (199)
T cd04110          73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPER  125 (199)
T ss_pred             HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc
Confidence            334677899999999975544333 234444444322   2389999999997643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04114 Rab30 Rab30 subfamily

Probab=99.46  E-value=1.3e-12  Score=103.39  Aligned_cols=117  Identities=16%  Similarity=0.171  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++....+...  .+.+.........+ .+  ..+.++||||...+           ....
T Consensus         8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~   73 (169)
T cd04114           8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERF-----------RSIT   73 (169)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HHHH
Confidence            799999999999999999998655422211  11122222233334 33  45788999996432           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|+++.-+... ..++..+........  |++++.||.|....
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~~i~v~NK~D~~~~  127 (169)
T cd04114          74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKV--ITILVGNKIDLAER  127 (169)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccc
Confidence            234677899999999864433322 234444454433333  88999999997643

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=99.46  E-value=1.9e-12  Score=103.58  Aligned_cols=118  Identities=14%  Similarity=0.064  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------CCceEEEEeCCCCCCCCCCcHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF   88 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtpG~~~~~~~~~~   88 (285)
                      .+|+++|++|+|||||++.+++.... .... .++..........+.           ....+.|+||||...       
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------   75 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNKFN-PKFI-TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------   75 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-ccCC-CccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence            69999999999999999999876542 2111 111111111112110           124588999999432       


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                          +.......+..+|++++|+|+.++-+... ..++..+..... ....|+++|.||.|...
T Consensus        76 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~  134 (180)
T cd04127          76 ----FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLED  134 (180)
T ss_pred             ----HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchh
Confidence                22233345678999999999975444333 234444443211 11238999999999764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01890 LepA LepA subfamily

Probab=99.46  E-value=1.1e-12  Score=104.77  Aligned_cols=116  Identities=20%  Similarity=0.243  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc------ccccC-------CCCcceeEEEEEEEe----eCCceEEEEeCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAF------KSRAS-------SSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF   82 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~------~~~~~-------~~~~t~~~~~~~~~~----~~~~~~~liDtpG~~~~   82 (285)
                      ++|+++|++|+|||||++.+++....      .....       ..+++.........+    ..+..+.++||||+.++
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            37999999999999999999874311      00000       112333322222222    13456889999998753


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .       .    ....++.++|++++|+|+.++.+..+...+..+..   ..  .|+++++||+|...
T Consensus        81 ~-------~----~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~  133 (179)
T cd01890          81 S-------Y----EVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPS  133 (179)
T ss_pred             H-------H----HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCc
Confidence            1       1    12233567899999999976666666554443332   12  28999999999754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04125 RabA_like RabA-like subfamily

Probab=99.46  E-value=1.3e-12  Score=105.54  Aligned_cols=117  Identities=19%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++........  .............. .+  ..+.++||||...+           ....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~-----------~~~~   66 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVYI-ENKIIKLQIWDTNGQERF-----------RSLN   66 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HhhH
Confidence            379999999999999999999776422111  11111222223333 22  35789999996432           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+.++|++++|+|+.++-+.... .++..+....+..  .|++++.||.|....
T Consensus        67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~  120 (188)
T cd04125          67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN  120 (188)
T ss_pred             HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc
Confidence            3346789999999999755443332 3444444433322  389999999997643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00157 Rho Rho (Ras homology) family

Probab=99.46  E-value=7.4e-13  Score=104.87  Aligned_cols=116  Identities=18%  Similarity=0.103  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++...... ..+...  .......... ....+.++||||...+....           .
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~-----------~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTE-YVPTVF--DNYSATVTVDGKQVNLGLWDTAGQEEYDRLR-----------P   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCcee--eeeEEEEEECCEEEEEEEEeCCCcccccccc-----------h
Confidence            3799999999999999999998764221 111111  1111112221 23468999999987542211           1


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|++++.+...  ..++..+.....   ..|+++++||.|....
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~  119 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD  119 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence            23567899999999975433332  234444444333   2399999999998765

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04149 Arf6 Arf6 subfamily

Probab=99.46  E-value=1.5e-12  Score=103.16  Aligned_cols=113  Identities=13%  Similarity=0.128  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.+...... . .   .+|....+..... .+..+.++||||...+           ......
T Consensus        10 ~kv~i~G~~~~GKTsli~~l~~~~~~-~-~---~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~~   72 (168)
T cd04149          10 MRILMLGLDAAGKTTILYKLKLGQSV-T-T---IPTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPLWRH   72 (168)
T ss_pred             cEEEEECcCCCCHHHHHHHHccCCCc-c-c---cCCcccceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence            79999999999999999999865432 1 1   1122222333334 5678999999997531           112234


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~  151 (285)
                      ++.++|++++|+|+.++.+..+.  ...+...+...  ...|++++.||+|...
T Consensus        73 ~~~~a~~ii~v~D~t~~~s~~~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          73 YYTGTQGLIFVVDSADRDRIDEA--RQELHRIINDREMRDALLLVFANKQDLPD  124 (168)
T ss_pred             HhccCCEEEEEEeCCchhhHHHH--HHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence            57789999999999754333221  22222222211  1238999999999754

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.46  E-value=1.7e-12  Score=104.49  Aligned_cols=114  Identities=10%  Similarity=0.021  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|.+|+|||||++.+++.... . .   .+|.......... .+..+.++||||...+           ......
T Consensus        18 ~~i~ivG~~~~GKTsli~~l~~~~~~-~-~---~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----------~~~~~~   80 (184)
T smart00178       18 AKILFLGLDNAGKTTLLHMLKNDRLA-Q-H---QPTQHPTSEELAI-GNIKFTTFDLGGHQQA-----------RRLWKD   80 (184)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-c-c---CCccccceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence            79999999999999999999986531 1 1   1122222333444 5778999999997531           112234


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++..+|++++|+|+.++-+-.. ...+..+.... .....|++++.||.|...
T Consensus        81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~  132 (184)
T smart00178       81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY  132 (184)
T ss_pred             HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC
Confidence            5678999999999864321111 11222221110 001238999999999753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.46  E-value=1.3e-12  Score=106.60  Aligned_cols=116  Identities=14%  Similarity=0.068  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE--EEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .+|+++|++|+|||||++.+++...... .   .+|....  ...+.+.  ....+.++||||...+.           .
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~-~---~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-----------~   65 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH-Y---KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-----------G   65 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC-C---CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-----------h
Confidence            3799999999999999999997653221 1   2233222  2223331  13458899999974321           1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC--ccccCeEEEEEeCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFG--KKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~iil~nk~D~~  150 (285)
                      .....+.++|++++|+|++++-+-... .++..+...+.  .....|+++|.||.|..
T Consensus        66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            223347789999999999755444432 23334433221  11234899999999986

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.46  E-value=1.5e-12  Score=102.75  Aligned_cols=112  Identities=14%  Similarity=0.161  Sum_probs=70.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 023214           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (285)
                      |+++|++|+|||||++.+++.... ....   +|.......... .+..+.++||||...+.           .....++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~---pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~~-----------~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSL-ESVV---PTTGFNSVAIPT-QDAIMELLEIGGSQNLR-----------KYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCc-cccc---ccCCcceEEEee-CCeEEEEEECCCCcchh-----------HHHHHHH
Confidence            789999999999999999977532 2211   122122233333 56789999999976431           1122346


Q ss_pred             CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       102 ~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++|++++|+|..++.+... +.++..+..   .....|++++.||.|....
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~  114 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAA  114 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCC
Confidence            78899999999875443222 222332322   1123499999999997654

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.46  E-value=1.9e-12  Score=101.92  Aligned_cols=115  Identities=16%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeEEE--EEEEe--eCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEM--QRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~-~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      +|+++|++|+|||||++.+.+.. .++...   .+|..+.+  .....  .....+.++||||...+        .   .
T Consensus         2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~---~   67 (164)
T cd04101           2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNY---LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY--------S---D   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCccC---CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH--------H---H
Confidence            79999999999999999998542 232221   12222111  12222  12356899999995321        1   1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .....+..+|++++|+|++++-+... ..++..+.... .  ..|+++|.||.|....
T Consensus        68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~~~  122 (164)
T cd04101          68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-K--HMPGVLVGNKMDLADK  122 (164)
T ss_pred             HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccccc
Confidence            22234578899999999975543332 23444444432 1  2389999999997643

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.46  E-value=1.2e-12  Score=118.74  Aligned_cols=117  Identities=19%  Similarity=0.262  Sum_probs=83.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc---------------CCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA---------------SSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|+.++|||||++.|++......              +.               ...|+|.........+ .+.
T Consensus         6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~~   84 (425)
T PRK12317          6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DKY   84 (425)
T ss_pred             EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CCe
Confidence            37999999999999999999985432211              10               1357888888877777 788


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~  147 (285)
                      .++++||||+.++.       ..+    ......+|++++|+|+.+  .+.......+.++.. ++.+   ++++++||+
T Consensus        85 ~i~liDtpG~~~~~-------~~~----~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~---~iivviNK~  149 (425)
T PRK12317         85 YFTIVDCPGHRDFV-------KNM----ITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGIN---QLIVAINKM  149 (425)
T ss_pred             EEEEEECCCcccch-------hhH----hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCC---eEEEEEEcc
Confidence            99999999975432       111    122457899999999986  566666666655543 3432   789999999


Q ss_pred             CCCC
Q 023214          148 DELE  151 (285)
Q Consensus       148 D~~~  151 (285)
                      |...
T Consensus       150 Dl~~  153 (425)
T PRK12317        150 DAVN  153 (425)
T ss_pred             cccc
Confidence            9865

>cd01893 Miro1 Miro1 subfamily

Probab=99.45  E-value=1.4e-12  Score=103.06  Aligned_cols=114  Identities=18%  Similarity=0.114  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +|+++|.+|+|||||++.+++...+ ..........   ...... .....+.++||||.....       .    .+..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~-------~----~~~~   66 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEI---TIPADVTPERVPTTIVDTSSRPQDR-------A----NLAA   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcccce---EeeeeecCCeEEEEEEeCCCchhhh-------H----HHhh
Confidence            7999999999999999999976642 2221111111   111111 134568899999976421       1    1122


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|+.++-+...  ..++..+..... .  .|++++.||+|....
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~  118 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDG  118 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccc
Confidence            3467899999999875555444  235555655432 3  399999999998654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.45  E-value=1.8e-12  Score=102.98  Aligned_cols=116  Identities=19%  Similarity=0.121  Sum_probs=71.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE--EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      +|+++|++|+|||||++.+++... ....   .+|....+.  ..... ....+.++||||...+           ....
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~   66 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVF-DKNY---KATIGVDFEMERFEILGVPFSLQLWDTAGQERF-----------KCIA   66 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCC---CCceeeEEEEEEEEECCEEEEEEEEeCCChHHH-----------HhhH
Confidence            799999999999999999998763 2222   223322222  22221 1346899999996532           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+.++|++++|+|+.++-+... ..++..+.....+ ...|+++|.||.|+...
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~  121 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP  121 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc
Confidence            344778999999999974433222 3444444332221 12378999999997543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04109 Rab28 Rab28 subfamily

Probab=99.45  E-value=1.4e-12  Score=107.63  Aligned_cols=116  Identities=18%  Similarity=0.166  Sum_probs=73.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      +|+++|++|+|||||++.+++... ....   .+|....+  .......  ...+.|+||||...+        ..   .
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~---~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~--------~~---l   66 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSY---KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG--------GK---M   66 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC-CCCC---CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH--------HH---H
Confidence            799999999999999999997653 2211   22333222  2233322  346889999995421        11   2


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~  151 (285)
                      ....+..+|++++|+|++++-+... ..++..+...... ....|+++|.||.|+..
T Consensus        67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~  123 (215)
T cd04109          67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH  123 (215)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence            2233678999999999975544433 2455556555432 12237889999999863

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.45  E-value=2.1e-12  Score=102.92  Aligned_cols=114  Identities=15%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.+++.....  .   .+|....+....+ .+..+.++||||...+           ......
T Consensus        16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~-----------~~~~~~   78 (174)
T cd04153          16 YKVIIVGLDNAGKTTILYQFLLGEVVH--T---SPTIGSNVEEIVY-KNIRFLMWDIGGQESL-----------RSSWNT   78 (174)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCCC--c---CCccccceEEEEE-CCeEEEEEECCCCHHH-----------HHHHHH
Confidence            799999999999999999998655322  1   2233333444555 5778999999997532           112234


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++.++|++++|+|++++-+... ...+..+....+ ....|++++.||.|...
T Consensus        79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKG  130 (174)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCC
Confidence            4678899999999874422211 122222211111 01249999999999764

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01862 Rab7 Rab7 subfamily

Probab=99.45  E-value=2e-12  Score=102.53  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|++|+|||||+|++++........  .............+ .+  ..+.++||||...+.           ....
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~-----------~~~~   67 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQ-----------SLGV   67 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCcC--CccceEEEEEEEEE-CCEEEEEEEEeCCChHHHH-----------hHHH
Confidence            79999999999999999999876422211  11111111222333 23  346799999964321           1122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~iil~nk~D~~~  151 (285)
                      ..+..+|++++|+|+.++.+.... .+...+...+..  ....|++++.||.|...
T Consensus        68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            346778999999999755443332 222223332221  11248999999999873

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.45  E-value=1.1e-12  Score=108.46  Aligned_cols=115  Identities=16%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEE--Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT--VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+++|.+|+|||||++.++.... ....   ..|..+.+...  ... ....+.++||||...+..           
T Consensus        13 ~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~---~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------   77 (219)
T PLN03071         13 SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-----------   77 (219)
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCC-CCcc---CCccceeEEEEEEEECCeEEEEEEEECCCchhhhh-----------
Confidence            37999999999999999999875542 2211   12222222222  221 235789999999765321           


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....++.++|++|+|+|++++.+... ..++..+..... .  .|+++|.||+|...
T Consensus        78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~  131 (219)
T PLN03071         78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-N--IPIVLCGNKVDVKN  131 (219)
T ss_pred             hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhhhh
Confidence            11234678899999999976655443 345555555432 3  39999999999753

>cd04120 Rab12 Rab12 subfamily

Probab=99.45  E-value=2.4e-12  Score=104.85  Aligned_cols=115  Identities=15%  Similarity=0.213  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .|+++|..|+|||||++.++.... .... ..+++.......+.+ ++  ..+.++||+|...+           .....
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~-~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~-----------~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTF-CEAC-KSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-----------NSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCC-CCcC-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHHHH
Confidence            589999999999999999986553 2211 112222222223344 33  56889999997532           12223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++.++|++++|+|++++-+.... .++..+.......  .|+++|.||.|+..
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~  119 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCET  119 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            457889999999999866655553 3444454443333  38999999999753

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.45  E-value=1.1e-12  Score=108.13  Aligned_cols=115  Identities=22%  Similarity=0.331  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEee---------CCceEEEEeC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------DGQVVNVIDT   76 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~liDt   76 (285)
                      ++|+++|+.++|||||+.+|+.........              ...+.|......+..+.         .+..++++||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            379999999999999999998554211100              11244544443333341         1566899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ||+.++.       .    ....++..+|++++|+|+..+.+......+..+... +  .  |+++++||+|..
T Consensus        81 PG~~~f~-------~----~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~--~--p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFS-------S----EVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R--V--KPVLVINKIDRL  138 (222)
T ss_pred             CCccccH-------H----HHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C--C--CEEEEEECCCcc
Confidence            9988642       1    222345677999999999878888777666665542 2  2  899999999976

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.45  E-value=1e-12  Score=103.43  Aligned_cols=115  Identities=21%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|++|+|||||++++++.... ....+.. . ......... .+  ..+.++||||...+..        +   ..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~-~~~~~t~-~-~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~---~~   66 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFV-DDYDPTI-E-DSYRKQIEI-DGEVCLLDILDTAGQEEFSA--------M---RD   66 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCC-cccCCch-h-hhEEEEEEE-CCEEEEEEEEECCCcccchH--------H---HH
Confidence            7999999999999999999976632 2221111 1 111122222 23  4578999999765321        1   11


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+..+|++++|+|+.++-+... ..+...+...... ...|++++.||+|...
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~  119 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES  119 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            23566799999999975443333 2233334333221 1238999999999764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PLN03110 Rab GTPase; Provisional

Probab=99.45  E-value=1.6e-12  Score=107.28  Aligned_cols=117  Identities=16%  Similarity=0.167  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++........  .++........+... ....+.|+||||...           +.....
T Consensus        13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~~~~   79 (216)
T PLN03110         13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQVEGKTVKAQIWDTAGQER-----------YRAITS   79 (216)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            799999999999999999999876432211  111122222223331 124688999999542           112223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+..++++++|+|+.+.-+... ..++..+........  |++++.||+|+..
T Consensus        80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--piiiv~nK~Dl~~  131 (216)
T PLN03110         80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI--VIMMAGNKSDLNH  131 (216)
T ss_pred             HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC--eEEEEEEChhccc
Confidence            44678899999999975544433 345555555433333  8999999999753

>cd04131 Rnd Rnd subfamily

Probab=99.45  E-value=1.3e-12  Score=104.44  Aligned_cols=114  Identities=15%  Similarity=0.090  Sum_probs=75.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++... +....   +|....+. ..... ....+.++||||...+..           ..
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~---~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~-----------~~   66 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYV---PTVFENYTASFEIDEQRIELSLWDTSGSPYYDN-----------VR   66 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC-CCCcC---CceEEEEEEEEEECCEEEEEEEEECCCchhhhh-----------cc
Confidence            5899999999999999999997653 32221   22222221 22231 124588999999653321           12


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+++++|++++|+|++++-|-..  ..|+..+....+ .  .|+++|.||.|+..
T Consensus        67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~~  119 (178)
T cd04131          67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLRT  119 (178)
T ss_pred             hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhhc
Confidence            235788999999999986766655  356666666543 3  38999999999743

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.45  E-value=1.8e-12  Score=101.65  Aligned_cols=114  Identities=13%  Similarity=0.043  Sum_probs=69.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|++|+|||||++.+++......     .+|....+..........+.++||||....           .......
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~-----------~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEKM-----------RTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHhH-----------HHHHHHH
Confidence            589999999999999999998764321     112222233333323567999999997531           1122234


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +..+|++++|+|+.++.+... ...+..+..... ....|++++.||.|...
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  115 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPG  115 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECccccc
Confidence            667899999999864432222 122222211100 01239999999999754

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.45  E-value=2e-12  Score=101.28  Aligned_cols=113  Identities=12%  Similarity=0.021  Sum_probs=70.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|++|+|||||++.+.......  .   .+|.........+ .+..+.++||||...+           ......+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT--T---IPTIGFNVETVTY-KNLKFQVWDLGGQTSI-----------RPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC--c---CCccCcCeEEEEE-CCEEEEEEECCCCHHH-----------HHHHHHH
Confidence            58999999999999999997655321  1   1232223334444 5678999999997532           1122344


Q ss_pred             cCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..+|++++|+|+.++.+..  ...+...+....-  ...|++++.||+|....
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA  115 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC
Confidence            67899999999987442222  1222222222110  12399999999997643

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04175 Rap1 Rap1 subgroup

Probab=99.44  E-value=1.3e-12  Score=102.98  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|.+|+|||||++.++.... .....   +|.... ...... .  ...+.++||||...+..           .
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~   65 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYD---PTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTA-----------M   65 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCC-CcccC---CcchheEEEEEEE-CCEEEEEEEEECCCcccchh-----------H
Confidence            5899999999999999999985542 22111   111111 112333 3  33467999999764321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++.++|++++|+|..++-+..+ ..++..+..... ....|++++.||.|...
T Consensus        66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  120 (164)
T cd04175          66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED  120 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence            1224667899999999864544333 234444443321 12239999999999764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04134 Rho3 Rho3 subfamily

Probab=99.44  E-value=1.2e-12  Score=105.77  Aligned_cols=115  Identities=19%  Similarity=0.120  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++...+.. .   .+|....+. ..... ....+.++||||...+..           ..
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~-~---~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~-----------l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-Y---EPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR-----------LR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCc-c---CCcceeeeEEEEEECCEEEEEEEEECCCChhccc-----------cc
Confidence            3799999999999999999997664221 1   122222222 12221 124689999999764321           11


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|++++++-+....  .++..+..... .  .|+++|.||.|+...
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~--~piilvgNK~Dl~~~  119 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-G--VKLVLVALKCDLREA  119 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccC
Confidence            2346788999999999766544432  35666655432 2  399999999998654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.44  E-value=3.3e-12  Score=106.45  Aligned_cols=88  Identities=20%  Similarity=0.267  Sum_probs=60.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+|+|++|+|||||+|.|+|......  ...+.|..+......+ .+..+.++||||+.+...........+    ...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence            789999999999999999999864322  1234455555555556 678899999999875432222222222    334


Q ss_pred             cCCccEEEEEEeCCC
Q 023214          101 KDGIHAVLVVFSVRS  115 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~  115 (285)
                      ++.+|++++|+|+.+
T Consensus        75 ~~~ad~il~V~D~t~   89 (233)
T cd01896          75 ARTADLILMVLDATK   89 (233)
T ss_pred             hccCCEEEEEecCCc
Confidence            678899999999853

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04117 Rab15 Rab15 subfamily

Probab=99.44  E-value=2.3e-12  Score=101.38  Aligned_cols=113  Identities=16%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      +|+++|++|+|||||++.+++....+..    ..|....+  ..... .+  ..+.++||||...+.           ..
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~   65 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQ-----------TI   65 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHH-----------hh
Confidence            7999999999999999999876643221    22222222  23333 23  457899999965321           11


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|++++-+-... .++..+......  ..|++++.||.|...
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~  119 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQ  119 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            22346788999999999755444332 344444433222  248999999999754

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04176 Rap2 Rap2 subgroup

Probab=99.44  E-value=1.9e-12  Score=101.82  Aligned_cols=116  Identities=18%  Similarity=0.193  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|.+|+|||||++.+++...... ..+.  ........... .+  ..+.|+||||...+...           .
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-----------~   66 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPT--IEDFYRKEIEV-DSSPSVLEILDTAGTEQFASM-----------R   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--hhheEEEEEEE-CCEEEEEEEEECCCcccccch-----------H
Confidence            6899999999999999999987654322 1111  11111222333 33  34778999997654221           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++.++|++++|+|..++-+-.+ ..++..+..... ....|++++.||.|...
T Consensus        67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~  120 (163)
T cd04176          67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES  120 (163)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence            123567899999999975544333 334444444322 12348999999999754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.44  E-value=2.1e-12  Score=103.59  Aligned_cols=115  Identities=16%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|.+|+|||||++.+++... ....   .+|....+. ..... ....+.|+||+|...+.           ..
T Consensus         5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~---~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~-----------~~   69 (182)
T cd04172           5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENY---VPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------NV   69 (182)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCC-CCcc---CCceeeeeEEEEEECCEEEEEEEEECCCchhhH-----------hh
Confidence            37999999999999999999987653 2222   122222221 22221 13458899999964321           12


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++.++|++++|+|++++-+-..  ..++..+....+ .  .|+++|.||.|+..
T Consensus        70 ~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~  123 (182)
T cd04172          70 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRT  123 (182)
T ss_pred             hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhc
Confidence            2345789999999999987766555  356666666533 3  39999999999743

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.44  E-value=1.8e-12  Score=104.51  Aligned_cols=114  Identities=13%  Similarity=0.079  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|++|+|||||++.+++.... ...   ..|....+. .+...  ....+.++||||...+.        .   .
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~---~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------~---~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEY---VPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD--------R---L   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCC-CCC---CCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH--------H---H
Confidence            37999999999999999999977642 211   122222222 22221  12358899999965321        1   1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....+.++|++++|+|++++-+....  .++..+... ...  .|++++.||.|...
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~  119 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRK  119 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhh
Confidence            22346789999999999755554443  244444432 223  39999999999764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.44  E-value=3.1e-12  Score=102.11  Aligned_cols=113  Identities=13%  Similarity=0.074  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|+.|+|||||++.+..... ..    ..+|....+..... ....+.++||||...+           ......
T Consensus        14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~~----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~~-----------~~~~~~   76 (175)
T smart00177       14 MRILMVGLDAAGKTTILYKLKLGES-VT----TIPTIGFNVETVTY-KNISFTVWDVGGQDKI-----------RPLWRH   76 (175)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CC----cCCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHHH
Confidence            7999999999999999999963332 11    11233333334444 5678999999997532           112234


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHH-HHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQ-TLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++.++|++++|+|++++-+..+ ...+..+. .....  ..|++|+.||.|...
T Consensus        77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~  128 (175)
T smart00177       77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELR--DAVILVFANKQDLPD  128 (175)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhc--CCcEEEEEeCcCccc
Confidence            4788999999999975433222 22222221 11111  238999999999754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.43  E-value=1.1e-12  Score=104.24  Aligned_cols=112  Identities=23%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      |+++|+.|+|||||++.+++... +....+   +....+. .... .+  ..+.++||||......           ...
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~---~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~~   64 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVP---TVFENYSADVEV-DGKPVELGLWDTAGQEDYDR-----------LRP   64 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCC-CCCCCC---cEEeeeeEEEEE-CCEEEEEEEEECCCCcccch-----------hch
Confidence            58999999999999999998664 222211   2222221 2222 33  3588999999764321           112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+.++|++++|+|++++-+....  .++..+..... .  .|++++.||.|....
T Consensus        65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~  117 (174)
T smart00174       65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-N--TPIILVGTKLDLRED  117 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEecChhhhhC
Confidence            346789999999999755444332  35555555433 2  399999999997653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PLN03108 Rab family protein; Provisional

Probab=99.43  E-value=2.6e-12  Score=105.56  Aligned_cols=116  Identities=17%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|++|+|||||++.+++...........+.  ........+ .+  ..+.++||||...+           ....
T Consensus         7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~--~~~~~~i~~-~~~~i~l~l~Dt~G~~~~-----------~~~~   72 (210)
T PLN03108          7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV--EFGARMITI-DNKPIKLQIWDTAGQESF-----------RSIT   72 (210)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccc--eEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHHH
Confidence            69999999999999999999976543221111121  111122233 23  35789999996431           1112


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|+.++-+.... .++..+.......  .|++++.||.|...
T Consensus        73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~  125 (210)
T PLN03108         73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAH  125 (210)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCcc
Confidence            2335678999999999754443332 3444444433322  38999999999764

>PRK12735 elongation factor Tu; Reviewed

Probab=99.43  E-value=2.3e-12  Score=115.69  Aligned_cols=118  Identities=19%  Similarity=0.241  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      ..+|+++|+.++|||||++.|++...-.              ......+.|.........+ .+..++++||||+.+   
T Consensus        12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~---   87 (396)
T PRK12735         12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD---   87 (396)
T ss_pred             eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH---
Confidence            3799999999999999999999631100              0011346777766555555 567899999999642   


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                              +...+......+|++++|+|+.......+...+..+... +.+   .+++++||+|....
T Consensus        88 --------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-gi~---~iivvvNK~Dl~~~  143 (396)
T PRK12735         88 --------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD  143 (396)
T ss_pred             --------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEecCCcch
Confidence                    222333445678999999999766777777777665543 431   34567999998643

>cd04126 Rab20 Rab20 subfamily

Probab=99.43  E-value=2.2e-12  Score=106.33  Aligned_cols=113  Identities=23%  Similarity=0.172  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|.+|+|||||++.+++.... . .   ..|....+....+ ....+.||||||...+..        +   ...
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~-~---~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~~--------l---~~~   63 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFK-D-T---VSTVGGAFYLKQW-GPYNISIWDTAGREQFHG--------L---GSM   63 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC-C-C---CCccceEEEEEEe-eEEEEEEEeCCCcccchh--------h---HHH
Confidence            37999999999999999999977642 2 1   1233333333333 456789999999764321        1   122


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++..+|++++|+|++++-+.... .++..+.......  .|++||.||.|+..
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~  114 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE  114 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            36789999999999866555443 3444444432333  38999999999764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.43  E-value=2.6e-13  Score=101.15  Aligned_cols=116  Identities=21%  Similarity=0.204  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc--cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ||+|+|+.|+|||||++.|++.....  ......+.+.......... ....+.++|++|..........       +  
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~-------~--   70 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQF-------F--   70 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHH-------H--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccc-------h--
Confidence            68999999999999999999877541  1111122333322222211 2334889999997543221111       1  


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGD  148 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D  148 (285)
                        ...+|++++|+|..++-+.... ..+.++...-+.....|++++.||.|
T Consensus        71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence              3456999999998744433331 22333333321112249999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.43  E-value=4.5e-12  Score=99.53  Aligned_cols=113  Identities=13%  Similarity=0.073  Sum_probs=69.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|.+|+|||||++.+..... .. .   .+|....+..... ....+.++||||...+           ......+
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~-~~-~---~pt~g~~~~~~~~-~~~~~~l~D~~G~~~~-----------~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEI-VT-T---IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-cc-c---CCCCCcceEEEEE-CCEEEEEEECCCCHhH-----------HHHHHHH
Confidence            799999999999999999964432 22 1   1122222233344 5677999999997431           1122345


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~~  152 (285)
                      +.++|++++|+|+.++-+....  ...+...+...  ...|++++.||.|....
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  116 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIGEA--REELQRMLNEDELRDAVLLVFANKQDLPNA  116 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHHHH--HHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence            7889999999999744322221  12222222111  11389999999997543

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.43  E-value=4e-12  Score=101.46  Aligned_cols=114  Identities=23%  Similarity=0.159  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|.+|+|||||++.+++... +...   .+|....+. .... .+  ..+.|+||||...+..           .
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~---~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~   65 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEY---VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDR-----------L   65 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCCC---CCceeeeeEEEEEE-CCEEEEEEEEECCCccchhh-----------h
Confidence            5899999999999999999997653 2222   223222222 2233 33  4578999999865321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++.++|++++|+|++++-+....  .++..+....+ .  .|++++.||.|+...
T Consensus        66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~  120 (175)
T cd01874          66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD  120 (175)
T ss_pred             hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC
Confidence            12346788999999999766555443  35555554322 3  399999999997544

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PTZ00369 Ras-like protein; Provisional

Probab=99.43  E-value=2e-12  Score=104.54  Aligned_cols=116  Identities=24%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|.+|+|||||++.+++...... ..+   |....+ ...... ....+.++||||..++..        +   .
T Consensus         6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~-~~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------l---~   70 (189)
T PTZ00369          6 YKLVVVGGGGVGKSALTIQFIQNHFIDE-YDP---TIEDSYRKQCVIDEETCLLDILDTAGQEEYSA--------M---R   70 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCcC-cCC---chhhEEEEEEEECCEEEEEEEEeCCCCccchh--------h---H
Confidence            7999999999999999999997653221 111   111111 112221 134577899999875421        1   1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++.++|++++|+|++++-+... ..++..+..... ....|++++.||.|...
T Consensus        71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~  124 (189)
T PTZ00369         71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDS  124 (189)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            223668899999999975544333 234444444322 11338999999999753

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.43  E-value=3.2e-12  Score=102.75  Aligned_cols=117  Identities=15%  Similarity=0.119  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++.... ......+.+  ........  ..+..+.++||||...+           ....
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~~~   69 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFN--TEKIKVSLGNSKGITFHFWDVGGQEKL-----------RPLW   69 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccc--eeEEEeeccCCCceEEEEEECCCcHhH-----------HHHH
Confidence            68999999999999999999876532 211111111  11122221  13467999999996422           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|+.+.-+... ..++..+..... ....|+++++||+|...
T Consensus        70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~  123 (183)
T cd04152          70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN  123 (183)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence            234678899999999864322222 122333333221 12249999999999764

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04118 Rab24 Rab24 subfamily

Probab=99.43  E-value=4.1e-12  Score=102.90  Aligned_cols=114  Identities=21%  Similarity=0.253  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .+|+++|++|+|||||++.+++........   ..|....+  ..... .+  ..+.++||||...+..        +  
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~--------~--   66 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEA--------M--   66 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhh--------h--
Confidence            379999999999999999999765322111   12222222  12333 33  3466999999754311        1  


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ....+.++|++++|+|+++.-+... ..++..+... ...  .|+++|.||+|...
T Consensus        67 -~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~--~piilv~nK~Dl~~  119 (193)
T cd04118          67 -SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EEH--CKIYLCGTKSDLIE  119 (193)
T ss_pred             -hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CCC--CCEEEEEEcccccc
Confidence             1223668899999999975533332 2345544443 222  38999999999754

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.43  E-value=3.5e-12  Score=119.16  Aligned_cols=116  Identities=22%  Similarity=0.377  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-cccc-------------cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      ++|+++|+.++|||||++.|+.... +...             ....+.|+......+.| .+..++||||||+.++.  
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~--   78 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG--   78 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence            5899999999999999999985321 1110             01246788887788888 78999999999987642  


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                           .++..    ++..+|++++|+|+........+.++..+... +  .  |+++++||+|....
T Consensus        79 -----~ev~~----~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~--i--p~IVviNKiD~~~a  131 (594)
T TIGR01394        79 -----GEVER----VLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G--L--KPIVVINKIDRPSA  131 (594)
T ss_pred             -----HHHHH----HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C--C--CEEEEEECCCCCCc
Confidence                 22222    34567999999999767777777777777653 3  2  78999999997643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04121 Rab40 Rab40 subfamily

Probab=99.43  E-value=2.9e-12  Score=103.36  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|..|+|||||+..+.+... ..... ..++.......+.. ++  ..+.++||||...+           ....
T Consensus         7 ~KivviG~~~vGKTsll~~~~~~~~-~~~~~-~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~l~   72 (189)
T cd04121           7 LKFLLVGDSDVGKGEILASLQDGST-ESPYG-YNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRF-----------CTIF   72 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-CcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHHH
Confidence            7999999999999999999987542 22111 11222222222333 33  45889999997532           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++.++|++++|+|++++.+... ..++..+.... +.  .|++||.||.|+..
T Consensus        73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~--~piilVGNK~DL~~  124 (189)
T cd04121          73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PG--VPKILVGNRLHLAF  124 (189)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccchh
Confidence            344678999999999986766555 34566665543 23  39999999999753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04116 Rab9 Rab9 subfamily

Probab=99.42  E-value=4.3e-12  Score=100.54  Aligned_cols=119  Identities=17%  Similarity=0.057  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++.........  .............. ....+.++||||...+           .....
T Consensus         6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----------~~~~~   72 (170)
T cd04116           6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEVDGHFVTLQIWDTAGQERF-----------RSLRT   72 (170)
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEEECCeEEEEEEEeCCChHHH-----------HHhHH
Confidence            7999999999999999999997654322111  11111112223331 1245788999995421           12223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|++++++-+.... .+...+......  ....|++++.||.|...
T Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  128 (170)
T cd04116          73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE  128 (170)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence            346788999999998755433332 233333332211  12348999999999763

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.42  E-value=3.8e-12  Score=101.28  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|..|+|||||++.+++...+ ...   .+|....+. .... .+  ..+.|+||||...+.           ..
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~l   66 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFP-DYH---DPTIEDAYKQQARI-DNEPALLDILDTAGQAEFT-----------AM   66 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCc---CCcccceEEEEEEE-CCEEEEEEEEeCCCchhhH-----------HH
Confidence            68999999999999999999876532 211   112211111 2233 33  458899999975431           12


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++.++|++++|+|++++.+..... ++..+..... ....|+++|.||.|...
T Consensus        67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~  121 (172)
T cd04141          67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLES  121 (172)
T ss_pred             hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhh
Confidence            223467889999999998776666543 3344444321 12249999999999754

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.42  E-value=2.1e-12  Score=107.42  Aligned_cols=128  Identities=20%  Similarity=0.210  Sum_probs=88.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE-FVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~   97 (285)
                      ..+|++||.+++|||||.|.+.|..+++.  +....|+.+....+...+...+.++||||+.....-.. .....+....
T Consensus        72 ~L~vavIG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             EEEEEEEcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            47999999999999999999999998543  44555666666666665778899999999986533211 1122222333


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+...+|.+++|+|+.+.-....-..+..+.....    .|.++++||.|....
T Consensus       150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~  200 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQ  200 (379)
T ss_pred             HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchh
Confidence            455677899999999864333333455555555422    289999999998754

>cd00876 Ras Ras family

Probab=99.42  E-value=4.4e-12  Score=99.09  Aligned_cols=115  Identities=20%  Similarity=0.188  Sum_probs=70.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|+.|+|||||++.+++.. +.....+...  ......... .  ...+.++|+||....           .....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~--~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIE--DSYRKTIVV-DGETYTLDILDTAGQEEF-----------SAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChh--HeEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHHH
Confidence            58999999999999999999776 3332222111  111222223 2  345889999996531           11122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+...|++++|+|+.++-+..+ ..++..+..... ....|++++.||.|...
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~  118 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN  118 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence            33556799999999864433333 334444444433 12349999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.42  E-value=4.2e-12  Score=103.33  Aligned_cols=116  Identities=17%  Similarity=0.155  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEee------CCceEEEEeCCCCCCCCCCcHHHHHH
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK------DGQVVNVIDTPGLFDFSAGSEFVGKE   92 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~------~~~~~~liDtpG~~~~~~~~~~~~~~   92 (285)
                      +|+++|.+|+|||||++.+++...... .   ..|+.+.+  ....+.      ....+.|+||+|...+          
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~-~---~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~----------   67 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGR-P---SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV----------   67 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCC-C---CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH----------
Confidence            799999999999999999998764322 1   12222211  122221      1235889999997532          


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC-----------------ccccCeEEEEEeCCCCCC
Q 023214           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFG-----------------KKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~-----------------~~~~~~~iil~nk~D~~~  151 (285)
                       ......++.++|++++|+|++++-|.... .|+..+....+                 .....|++||.||.|+..
T Consensus        68 -~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          68 -KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             -HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence             12223457889999999999867665543 45555544210                 112349999999999754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04111 Rab39 Rab39 subfamily

Probab=99.42  E-value=4.2e-12  Score=104.41  Aligned_cols=118  Identities=19%  Similarity=0.128  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++......  ...++........+....+  ..+.++||||...+           ....
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~~   69 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-----------RSIT   69 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-----------HHHH
Confidence            6999999999999999999997664222  1111111211222222122  45889999996432           1112


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|++++-+... ..++..+...... ...+++|+.||.|...
T Consensus        70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~  123 (211)
T cd04111          70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES  123 (211)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence            234678899999999975544333 2344444443322 2237888999999764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.42  E-value=4.1e-12  Score=120.29  Aligned_cols=115  Identities=16%  Similarity=0.255  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ++|+|+|+.++|||||+++|++......  ...+.|.....+...+.   .+..++||||||+.++           ...
T Consensus       245 p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-----------~~m  311 (742)
T CHL00189        245 PIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-----------SSM  311 (742)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHHH-----------HHH
Confidence            7999999999999999999997654322  12345555444544442   2478999999997532           112


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....+..+|++++|+++.++........+..+... +  .  |+++++||+|....
T Consensus       312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~-~--i--PiIVViNKiDl~~~  362 (742)
T CHL00189        312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA-N--V--PIIVAINKIDKANA  362 (742)
T ss_pred             HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc-C--c--eEEEEEECCCcccc
Confidence            22335677999999999777777777666665432 2  2  89999999998754

>cd04135 Tc10 TC10 subfamily

Probab=99.42  E-value=3.8e-12  Score=101.22  Aligned_cols=114  Identities=19%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|++|+|||||++.+++...... ..+   |....+ ..... .+  ..+.++||||...+....          
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~~---t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~----------   65 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-YVP---TVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLR----------   65 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC---ceeeeeEEEEEE-CCEEEEEEEEeCCCcccccccc----------
Confidence            3799999999999999999997664222 111   211111 12223 33  347799999987543211          


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ...+..+|++++|++..++-+....  .++..+... ...  .|++++.||+|....
T Consensus        66 -~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~  119 (174)
T cd04135          66 -PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDD  119 (174)
T ss_pred             -cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcC
Confidence             1346788999999998755443332  345555443 233  389999999997543

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03118 Rab family protein; Provisional

Probab=99.42  E-value=2.2e-12  Score=106.08  Aligned_cols=118  Identities=14%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++... .. .. ................ ...+.|+||||...+..        +   ..
T Consensus        15 ~kv~ivG~~~vGKTsli~~l~~~~~-~~-~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--------~---~~   80 (211)
T PLN03118         15 FKILLIGDSGVGKSSLLVSFISSSV-ED-LA-PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT--------L---TS   80 (211)
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCC-CC-cC-CCceeEEEEEEEEECCEEEEEEEEECCCchhhHH--------H---HH
Confidence            7999999999999999999998653 11 11 1111222222233311 24689999999764311        1   12


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEA--ALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|++++-+.....  +...+.. +......|+++|.||.|....
T Consensus        81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~  135 (211)
T PLN03118         81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE  135 (211)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc
Confidence            3366789999999997554444332  2222322 222222378999999997643

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.42  E-value=4.7e-12  Score=104.68  Aligned_cols=115  Identities=18%  Similarity=0.240  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeEEEEEEEeeCCceE
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQVV   71 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~   71 (285)
                      +|+++|+.|+|||||+..|+.......                             .....+.|.........+ .+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            589999999999999999863321100                             011246777777777777 78899


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEEEE
Q 023214           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (285)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~iil~  144 (285)
                      +++||||+.++       ...+    ......+|++++|+|+.+.       ........+..+. .++.   +|+++++
T Consensus        80 ~liDtpG~~~~-------~~~~----~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv  144 (219)
T cd01883          80 TILDAPGHRDF-------VPNM----ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV  144 (219)
T ss_pred             EEEECCChHHH-------HHHH----HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence            99999997432       1112    2234568999999999752       2333444444443 2342   2899999


Q ss_pred             eCCCCCC
Q 023214          145 TGGDELE  151 (285)
Q Consensus       145 nk~D~~~  151 (285)
                      ||+|...
T Consensus       145 NK~Dl~~  151 (219)
T cd01883         145 NKMDDVT  151 (219)
T ss_pred             Ecccccc
Confidence            9999873

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04144 Ras2 Ras2 subfamily

Probab=99.42  E-value=2.2e-12  Score=104.37  Aligned_cols=116  Identities=20%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|.+|+|||||++.+++... .....+ ...... ...... .+.  .+.++||||...+.           ....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~~~-t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHF-VETYDP-TIEDSY-RKQVVV-DGQPCMLEVLDTAGQEEYT-----------ALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-CccCCC-chHhhE-EEEEEE-CCEEEEEEEEECCCchhhH-----------HHHH
Confidence            589999999999999999986543 221111 111111 112223 333  47899999965321           1122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~  151 (285)
                      .++.++|++++|+|+++.-+... ..++..+...... ....|++++.||+|...
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~  120 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY  120 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence            34677899999999975544433 3445555544321 12348999999999754

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.41  E-value=5.8e-12  Score=109.27  Aligned_cols=128  Identities=25%  Similarity=0.199  Sum_probs=87.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+.|+++|-+++|||||+|.|+|...+..+.  ...|-.+....+.+.++..+.+-||.||.+.  -+..+..-+..-+
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~--LFATLdpttR~~~l~~g~~vlLtDTVGFI~~--LP~~LV~AFksTL  266 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQ--LFATLDPTTRRIELGDGRKVLLTDTVGFIRD--LPHPLVEAFKSTL  266 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeecccc--ccccccCceeEEEeCCCceEEEecCccCccc--CChHHHHHHHHHH
Confidence            34899999999999999999999988764432  2334444456666656889999999999852  3444444444443


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .. ...+|.++.|+|++++.-... ......+.++-...  .|+|+++||+|.+.+
T Consensus       267 EE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~  319 (411)
T COG2262         267 EE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED  319 (411)
T ss_pred             HH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc
Confidence            32 246899999999986633332 23344444431122  499999999998876

>cd04148 RGK RGK subfamily

Probab=99.41  E-value=3.5e-12  Score=105.62  Aligned_cols=117  Identities=21%  Similarity=0.133  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +|+++|++|+|||||++.+++.........+.+. .......+.+. ....+.++||||...      .    +..   .
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~~---~   67 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSVDGEESTLVVIDHWEQEM------W----TED---S   67 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEECCEEEEEEEEeCCCcch------H----HHh---H
Confidence            7999999999999999999765432111111111 01111222221 245689999999761      0    111   1


Q ss_pred             ccC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~-~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++. ++|++++|+|++++-+... ..++..+... ......|+++|.||.|....
T Consensus        68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc
Confidence            234 7899999999975544332 2344444443 21123499999999997643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.41  E-value=4e-12  Score=104.91  Aligned_cols=114  Identities=17%  Similarity=0.091  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|||.+|+|||||++.+++... +....+   |+...+. .+... ....+.||||+|...+.           ...
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p---Ti~~~~~~~~~~~~~~v~L~iwDt~G~e~~~-----------~l~   66 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVP---TVFENYTASFEIDKRRIELNMWDTSGSSYYD-----------NVR   66 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCccCC---ccccceEEEEEECCEEEEEEEEeCCCcHHHH-----------HHh
Confidence            5899999999999999999997653 322222   2221221 22231 13458899999965321           122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+++++|++++|+|++++-+-...  .+...+... .+..  |++||.||.|+..
T Consensus        67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~~~--piiLVgnK~DL~~  119 (222)
T cd04173          67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CPNA--KVVLVGCKLDMRT  119 (222)
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCC--CEEEEEECccccc
Confidence            2458899999999999766444432  233333333 2333  9999999999754

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.41  E-value=1.9e-12  Score=102.13  Aligned_cols=117  Identities=19%  Similarity=0.224  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|++|+|||||++.+++... .....+...+..  ...... .+  ..+.++||||.......      .    ..
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~--~~~~~~-~~~~~~~~i~D~~g~~~~~~~------~----~~   66 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLY--SRQVTI-DGEQVSLEILDTAGQQQADTE------Q----LE   66 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhc--eEEEEE-CCEEEEEEEEECCCCcccccc------h----HH
Confidence            589999999999999999886442 221111111111  122223 33  34789999998741110      0    11


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|++++-+... ..++..+..........|+++|.||+|...
T Consensus        67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  120 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH  120 (165)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence            22456799999999975544433 234444544321011238999999999653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.41  E-value=1e-11  Score=116.63  Aligned_cols=117  Identities=22%  Similarity=0.310  Sum_probs=84.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .|+++|+.++|||||+++|+|...-.. .....+.|+...+.......+..+++|||||+.+           +......
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence            689999999999999999998542111 1123477877776665554567899999999742           2222333


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+.++|++++|+|+++.+.+.++..+..+... +.+   ++++++||+|....
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi~---~iIVVlNKiDlv~~  119 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GNP---MLTVALTKADRVDE  119 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEECCccCCH
Confidence            45678999999999878888888887766543 432   56899999998754

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.41  E-value=5.4e-12  Score=120.98  Aligned_cols=122  Identities=20%  Similarity=0.231  Sum_probs=82.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||+|.|+|.....+  ...++|+........+ .+..+.++||||..+......  ...+.+....
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            6899999999999999999999875322  2367787776666666 678899999999987643211  1222222222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       .....+|++++|+|+++ +.. ....+..+.+. +    .|+++++||+|....
T Consensus        81 -l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~  127 (772)
T PRK09554         81 -ILSGDADLLINVVDASN-LER-NLYLTLQLLEL-G----IPCIVALNMLDIAEK  127 (772)
T ss_pred             -HhccCCCEEEEEecCCc-chh-hHHHHHHHHHc-C----CCEEEEEEchhhhhc
Confidence             12357899999999963 322 22333333332 3    299999999998643

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.41  E-value=1.2e-11  Score=115.73  Aligned_cols=115  Identities=22%  Similarity=0.288  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc--cccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRA--FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|+.++|||||++.|+|...  ++. ....++|..+.+....+ .+..+++|||||+.+           +...+.
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~   68 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAI   68 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHH
Confidence            689999999999999999998542  111 12346777777776766 568899999999642           222233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+.++|++++|+|+.++..+.....+..+.. ++-+   ++++++||+|....
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~---~iIVVlNK~Dlv~~  118 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIP---HTIVVITKADRVNE  118 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCCCCCH
Confidence            44567899999999987777777777665544 3432   59999999998754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04177 RSR1 RSR1 subgroup

Probab=99.41  E-value=5.6e-12  Score=99.80  Aligned_cols=118  Identities=20%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|.+|+|||||++.+++.... ....+.....  ......+. ....+.++||||...+...           ..
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDS--YRKQVEIDGRQCDLEILDTAGTEQFTAM-----------RE   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchhe--EEEEEEECCEEEEEEEEeCCCcccchhh-----------hH
Confidence            68999999999999999999976632 2111111111  11222231 1246789999998754321           11


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+.+++++++|++..++-+... ..+...+..... ....|++++.||.|....
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~  121 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDD  121 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhcccc
Confidence            23567799999999875433333 233444444332 123489999999997643

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK00049 elongation factor Tu; Reviewed

Probab=99.40  E-value=5e-12  Score=113.40  Aligned_cols=116  Identities=18%  Similarity=0.201  Sum_probs=82.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      ..+|+++|+.++|||||++.|++......              .....+.|.........+ .+..++++||||+.+   
T Consensus        12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~---   87 (396)
T PRK00049         12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD---   87 (396)
T ss_pred             EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH---
Confidence            37999999999999999999997421100              001346677766555554 577899999999642   


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEE-EEEeCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI-VVFTGGDELE  151 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i-il~nk~D~~~  151 (285)
                              +..........+|++++|+|+.......++..+.++... +.    |.+ +++||+|...
T Consensus        88 --------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~  142 (396)
T PRK00049         88 --------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVD  142 (396)
T ss_pred             --------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcc
Confidence                    222333445678999999999777888888888777654 43    554 6899999874

>PRK00007 elongation factor G; Reviewed

Probab=99.40  E-value=4.4e-12  Score=121.30  Aligned_cols=118  Identities=20%  Similarity=0.269  Sum_probs=87.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh---CCccccccc-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSIL---GRRAFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      ..++|+|+|+.++|||||++.|+   |........             ...+.|.........| .+..++++||||+.+
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~   87 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD   87 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence            45799999999999999999997   322111000             1346777777777888 788999999999764


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +       ..++.    .++..+|++++|+|+...+...+...+..+... +.    |.++++||+|....
T Consensus        88 f-------~~ev~----~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~  142 (693)
T PRK00007         88 F-------TIEVE----RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA  142 (693)
T ss_pred             H-------HHHHH----HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence            3       12233    334556999999999878899888888877764 32    78899999998865

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.40  E-value=6.3e-12  Score=100.85  Aligned_cols=114  Identities=14%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|..|+|||||++.+...... . .   .+|....+..... .+..+.++||||...           +......
T Consensus        18 ~ki~ivG~~~~GKTsl~~~l~~~~~~-~-~---~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~~   80 (181)
T PLN00223         18 MRILMVGLDAAGKTTILYKLKLGEIV-T-T---IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH   80 (181)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCc-c-c---cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHHHH
Confidence            79999999999999999999854422 1 1   2233333334444 577899999999642           1122334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~~  152 (285)
                      ++.++|++++|+|++++-+-.+  ....+...+...  ...|++|+.||.|....
T Consensus        81 ~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~  133 (181)
T PLN00223         81 YFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
T ss_pred             HhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence            4788999999999974433222  122333332211  12389999999997644

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.40  E-value=5.1e-12  Score=104.85  Aligned_cols=114  Identities=14%  Similarity=0.079  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|++||..|+|||||++.+++... +....   +|+...+. .+... ....+.||||+|...+.           ...
T Consensus        14 ~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~---pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~-----------~~~   78 (232)
T cd04174          14 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYV---PTVFENYTAGLETEEQRVELSLWDTSGSPYYD-----------NVR   78 (232)
T ss_pred             EEEEEECCCCCcHHHHHHHHhcCCC-CCCcC---CceeeeeEEEEEECCEEEEEEEEeCCCchhhH-----------HHH
Confidence            6999999999999999999987653 22221   22222221 12221 13558999999965321           122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++.++|++++|+|++++-+...  ..|+..+....+ ..  |+++|.||.|+..
T Consensus        79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~--piilVgNK~DL~~  131 (232)
T cd04174          79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-ST--RILLIGCKTDLRT  131 (232)
T ss_pred             HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccccc
Confidence            345789999999999986666554  356666666533 33  8999999999643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.40  E-value=7.2e-12  Score=112.35  Aligned_cols=118  Identities=15%  Similarity=0.229  Sum_probs=82.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      ..+|+++|+.++|||||++.|++......              .....+.|.......... .+..++++||||+.++  
T Consensus        12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~f--   88 (394)
T PRK12736         12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHADY--   88 (394)
T ss_pred             eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHHH--
Confidence            37999999999999999999997421100              001346777765555544 5678999999996421  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                           ..    ........+|++++|+|+.......+...+.++... +.+   ++++++||+|....
T Consensus        89 -----~~----~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~~---~~IvviNK~D~~~~  143 (394)
T PRK12736         89 -----VK----NMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YLVVFLNKVDLVDD  143 (394)
T ss_pred             -----HH----HHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---EEEEEEEecCCcch
Confidence                 12    222334577999999999877888888888777654 432   47788999998643

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.40  E-value=3.6e-12  Score=101.40  Aligned_cols=115  Identities=22%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|+.|+|||||++.+++... .....+..  .......... .+  ..+.++||||...+...           .
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~--~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~   65 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTA--FDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKL-----------R   65 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCce--eeeeeEEEEE-CCEEEEEEEEECCCChhhccc-----------c
Confidence            3789999999999999999987553 23222211  1111112222 22  45789999998543211           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++.++|++++|+|+.++-+...  ..++..+..... .  .|++++.||.|....
T Consensus        66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  119 (173)
T cd04130          66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTD  119 (173)
T ss_pred             ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccC
Confidence            234678999999999975544433  245555554322 2  389999999997643

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PRK12739 elongation factor G; Reviewed

Probab=99.40  E-value=3.6e-12  Score=122.00  Aligned_cols=118  Identities=23%  Similarity=0.319  Sum_probs=87.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc--c-c-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--R-A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--~-~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      ..++|+++|+.++|||||++.|+.......  + .             ...+.|.........+ .+..++++||||+.+
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~   85 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVD   85 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHH
Confidence            347999999999999999999975321100  0 0             1346788877788888 789999999999754


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +       ..+    +..++..+|++++|+|+...+...+...+..+... +.    |.++++||+|....
T Consensus        86 f-------~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~~----p~iv~iNK~D~~~~  140 (691)
T PRK12739         86 F-------TIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-GV----PRIVFVNKMDRIGA  140 (691)
T ss_pred             H-------HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence            2       122    23334566999999999878888888887776653 32    78999999998864

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.40  E-value=8e-12  Score=100.36  Aligned_cols=113  Identities=12%  Similarity=0.074  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.+..... .. .   .+|....+..... .+..+.++||||...           +......
T Consensus        18 ~kv~lvG~~~vGKTsli~~~~~~~~-~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~   80 (182)
T PTZ00133         18 VRILMVGLDAAGKTTILYKLKLGEV-VT-T---IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLWRH   80 (182)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc-cc-c---CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence            7999999999999999999964432 11 1   1233333334444 567899999999642           1122334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~  151 (285)
                      ++.++|++++|+|++++-+-.+  ....+...+...  ...|++|+.||.|...
T Consensus        81 ~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~  132 (182)
T PTZ00133         81 YYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPN  132 (182)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence            5788999999999964422222  112222222211  1238999999999754

>PLN03127 Elongation factor Tu; Provisional

Probab=99.40  E-value=5.3e-12  Score=114.46  Aligned_cols=118  Identities=16%  Similarity=0.213  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc----------cc----ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAF----------KS----RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~----------~~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      ..+|+++|+.++|||||++.|++....          ..    .....+.|.........+ .+..++++||||+.++  
T Consensus        61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f--  137 (447)
T PLN03127         61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADY--  137 (447)
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccch--
Confidence            478999999999999999999743110          00    011257777776666665 5778999999998642  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                           ...+..    ....+|++++|+|+.....+.++..+..+... +.+   .+++++||+|....
T Consensus       138 -----~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gip---~iIvviNKiDlv~~  192 (447)
T PLN03127        138 -----VKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVP---SLVVFLNKVDVVDD  192 (447)
T ss_pred             -----HHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEeeccCCH
Confidence                 122222    22358999999999777888888888777654 431   36788999998753

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.40  E-value=2.7e-12  Score=104.52  Aligned_cols=115  Identities=22%  Similarity=0.265  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|++|+|||||++.+++.... ....+...  ........+ .+  ..+.++||||...+..        +   ..
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~--~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~--------~---~~   65 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVE--EMHRKEYEV-GGVSLTLDILDTSGSYSFPA--------M---RK   65 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchh--hheeEEEEE-CCEEEEEEEEECCCchhhhH--------H---HH
Confidence            5899999999999999999976642 22211111  111223333 33  4688999999764311        1   12


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|+.+..+.... .++..+..... ....|++++.||+|...
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~  118 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE  118 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence            246788999999998754443332 23333444322 12349999999999765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.39  E-value=2.2e-12  Score=101.18  Aligned_cols=105  Identities=20%  Similarity=0.275  Sum_probs=64.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.|+|.....      ..+     ....+ ...  .+|||||+...   .....+.+.    .
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~-----~~v~~-~~~--~~iDtpG~~~~---~~~~~~~~~----~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKT-----QAVEF-NDK--GDIDTPGEYFS---HPRWYHALI----T   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCccC------ccc-----eEEEE-CCC--CcccCCccccC---CHHHHHHHH----H
Confidence            479999999999999999999865321      112     22223 222  26999998643   122222222    2


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+.++|++++|+|++...+....    .+... +..  .|+++++||.|....
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~~--~~ii~v~nK~Dl~~~  106 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GVS--KRQIAVISKTDMPDA  106 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCH----HHHhc-cCC--CCeEEEEEccccCcc
Confidence            35788999999999745433221    12221 212  289999999997543

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.39  E-value=6.1e-12  Score=120.43  Aligned_cols=118  Identities=19%  Similarity=0.254  Sum_probs=87.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc---c-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      ..++|+|+|+.++|||||+|.|++.......   .             ...+.|.........+ .+..++++||||+.+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~   87 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVD   87 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcc
Confidence            4579999999999999999999743321100   0             1246788888888888 788999999999986


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..       ..    ..++..+|++++|+|+.+.....+...+..+... +    .|+++++||+|....
T Consensus        88 ~~~-------~~----~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~  142 (689)
T TIGR00484        88 FTV-------EV----ERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGA  142 (689)
T ss_pred             hhH-------HH----HHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence            421       12    2334566999999999877888777777766543 3    288999999998764

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.39  E-value=2e-12  Score=99.42  Aligned_cols=101  Identities=20%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|++|+|||||+|.+++....      ...|..     ..+ .+   .++||||...   .....   +. .+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~---~~~~~---~~-~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYV---ENRRL---YS-ALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhh---hhHHH---HH-HHHHH
Confidence            7999999999999999999987531      111221     222 12   6899999731   11111   22 22234


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +.++|++++|+|+.++.+.....++.    .++ .   |+++++||+|...
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~-~---p~ilv~NK~Dl~~  102 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFAS----IFV-K---PVIGLVTKIDLAE  102 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHH----hcc-C---CeEEEEEeeccCC
Confidence            78899999999997666544433222    222 2   8999999999764

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.39  E-value=6.6e-12  Score=99.92  Aligned_cols=114  Identities=20%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|++|+|||||++.+++.... ....+   |....+ ..... .+  ..+.++||||......           .
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~   65 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVP---TVFENYVADIEV-DGKQVELALWDTAGQEDYDR-----------L   65 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCC---ccccceEEEEEE-CCEEEEEEEEeCCCchhhhh-----------c
Confidence            58999999999999999999976532 21211   111111 22233 22  3578999999754321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....+..+|++++|++++++-+...  ..++..+..... .  .|++++.||.|....
T Consensus        66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  120 (175)
T cd01870          66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND  120 (175)
T ss_pred             cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC
Confidence            1124678899999999874433222  234444444322 2  399999999997644

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK10218 GTP-binding protein; Provisional

Probab=99.39  E-value=6.3e-12  Score=117.41  Aligned_cols=117  Identities=21%  Similarity=0.305  Sum_probs=85.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-cccc-------------cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      ..+|+++|+.++|||||++.|++... +...             ....+.|.......+.+ .+..+++|||||+.++..
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~~   83 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFGG   83 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhHH
Confidence            37999999999999999999996322 1111             11246677777777777 788999999999887532


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                             ..    ..++..+|++++|+|+.++.....+..+..+... +-    |.++++||+|....
T Consensus        84 -------~v----~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-gi----p~IVviNKiD~~~a  135 (607)
T PRK10218         84 -------EV----ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-GL----KPIVVINKVDRPGA  135 (607)
T ss_pred             -------HH----HHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-CC----CEEEEEECcCCCCC
Confidence                   11    2235678999999999767777777777766543 32    78999999997643

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.38  E-value=5.5e-12  Score=100.56  Aligned_cols=113  Identities=20%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|.+|+|||||+..+++... .....+   |....+ ..... .+  ..+.++||||...+..           .
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~   65 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIP---TVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR-----------L   65 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCC---cceeeeEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence            5899999999999999999986543 222211   211111 11222 23  4588999999754321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++.++|++++|+|++++-+....  .++..+.... +.  .|+++|.||.|+..
T Consensus        66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~--~piilvgnK~Dl~~  119 (174)
T cd01871          66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PN--TPIILVGTKLDLRD  119 (174)
T ss_pred             hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEeeChhhcc
Confidence            12346789999999999765554443  3555555432 22  39999999999753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04167 Snu114p Snu114p subfamily

Probab=99.38  E-value=4e-12  Score=104.69  Aligned_cols=115  Identities=22%  Similarity=0.302  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------cCCCCcceeEEEEEEEee----CCceEEEEeCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG   78 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtpG   78 (285)
                      ++|+++|+.|+|||||++.|++.......                 ....+.+.........+.    ....++++||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            37999999999999999999865432110                 011234443333333331    135689999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ..++.       ..    ...++..+|++++|+|+.+..+......+..+... +    .|+++++||+|..
T Consensus        81 ~~~f~-------~~----~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNFM-------DE----VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE-G----LPIVLVINKIDRL  136 (213)
T ss_pred             CcchH-------HH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence            87641       11    22334577999999999767766655555544321 2    3899999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.38  E-value=8.6e-12  Score=97.93  Aligned_cols=117  Identities=19%  Similarity=0.170  Sum_probs=69.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++.... ....+.  +........... ....+.++||||..++.        .   ...
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~---~~~   66 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPT--KADSYRKKVVLDGEDVQLNILDTAGQEDYA--------A---IRD   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCc--chhhEEEEEEECCEEEEEEEEECCChhhhh--------H---HHH
Confidence            37999999999999999999976532 221111  111111112221 13458999999976431        1   122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+...|++++|+++.++-+... ..++..+..... ....|+++++||+|...
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            33567799999999864332222 233344443311 12349999999999865

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04128 Spg1 Spg1p

Probab=99.38  E-value=7.5e-12  Score=100.50  Aligned_cols=112  Identities=14%  Similarity=0.108  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .+|+++|.+|+|||||++.+++... ....   .+|....+  ..+.. .+  ..+.++||+|...+.           .
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~---~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~-----------~   64 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDY---IQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFI-----------N   64 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCC---CCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHH-----------H
Confidence            3799999999999999999987653 2221   12222222  22333 33  458899999965321           1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ....++.++|++++|+|++++-+..+. .++..+.......  .| ++|.||.|+.
T Consensus        65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~  117 (182)
T cd04128          65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF  117 (182)
T ss_pred             hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence            223457889999999999766555443 4555554432222  25 6789999975

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.38  E-value=1.4e-11  Score=100.71  Aligned_cols=116  Identities=15%  Similarity=0.146  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ++|+++|++|+|||||++.|.+.....+..+     ..........   ..+..+.|+||||...+       ..    .
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~~----~   64 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPKL-------RD----K   64 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHHH-------HH----H
Confidence            3799999999999999999997754322111     1111222222   13567999999997632       11    2


Q ss_pred             HhhccCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHh----CccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLF----GKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~-~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..++... ++++||+|+.+..+ .-.....++...+    ......|++|+.||.|....
T Consensus        65 ~~~~~~~~~~~vV~VvD~~~~~~-~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          65 LLETLKNSAKGIVFVVDSATFQK-NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             HHHHHhccCCEEEEEEECccchh-HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            22334555 99999999963321 1122222222211    11122399999999998754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04133 Rop_like Rop subfamily

Probab=99.38  E-value=9.4e-12  Score=99.27  Aligned_cols=114  Identities=19%  Similarity=0.163  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|..|+|||||+..++... |.....+   |....+ ...... ....+.++||+|...+....           
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~---Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~-----------   66 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIP---TVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLR-----------   66 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCC---cceeeeEEEEEECCEEEEEEEEECCCCccccccc-----------
Confidence            489999999999999999999665 3322221   222111 122221 13558999999987543222           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++.++|++++|+|.+++-|-...  .++..+.... +.  .|+++|.||.|+..
T Consensus        67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgnK~Dl~~  119 (176)
T cd04133          67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PN--VPIVLVGTKLDLRD  119 (176)
T ss_pred             hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEeChhhcc
Confidence            2347789999999999877776653  4666666543 23  39999999999754

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>TIGR00503 prfC peptide chain release factor 3

Probab=99.38  E-value=1e-11  Score=114.64  Aligned_cols=118  Identities=17%  Similarity=0.232  Sum_probs=82.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc--cccc------------------CCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAF--KSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (285)
                      ..+|+|+|+.|+|||||++.|+.....  ..+.                  ...+.+.........+ .+..++++||||
T Consensus        11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTPG   89 (527)
T TIGR00503        11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTPG   89 (527)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECCC
Confidence            379999999999999999998632211  0010                  0125566666666777 788999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      +.++.       ..    ...++..+|++++|+|+...+.......+..+... +    .|+++++||+|....+
T Consensus        90 ~~df~-------~~----~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-~----~PiivviNKiD~~~~~  148 (527)
T TIGR00503        90 HEDFS-------ED----TYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR-D----TPIFTFMNKLDRDIRD  148 (527)
T ss_pred             hhhHH-------HH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECccccCCC
Confidence            86542       11    22335677999999999767777777666655432 2    2899999999986543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.38  E-value=1.5e-12  Score=113.74  Aligned_cols=118  Identities=23%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      +.+|||+|.+|+|||||+|+|.|-..-..+..+.|++. ......+.++.-.++++||.||.+.+......    +...+
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~----Yl~~~  110 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEE----YLKEV  110 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHH----HHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHH----HHHHc
Confidence            37999999999999999999988654434444444321 11223333445578999999999865443332    22222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~  149 (285)
                        .+...|.|+++.+  .+++..+...+..+..+ |.    ++++|-||.|.
T Consensus       111 --~~~~yD~fiii~s--~rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~  153 (376)
T PF05049_consen  111 --KFYRYDFFIIISS--ERFTENDVQLAKEIQRM-GK----KFYFVRTKVDS  153 (376)
T ss_dssp             --TGGG-SEEEEEES--SS--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred             --cccccCEEEEEeC--CCCchhhHHHHHHHHHc-CC----cEEEEEecccc
Confidence              2345577766555  59999998888888876 54    89999999994

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01875 RhoG RhoG subfamily

Probab=99.37  E-value=7.6e-12  Score=101.28  Aligned_cols=113  Identities=19%  Similarity=0.123  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|.+|+|||||+..++.... +...   .+|....+. .... .+  ..+.++||||...+.           ..
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~-----------~l   67 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY---IPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEEYD-----------RL   67 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-CcCC---CCceEeeeEEEEEE-CCEEEEEEEEECCCchhhh-----------hh
Confidence            6999999999999999999986543 2211   223222221 1222 23  458899999975431           12


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++.++|++++|+|++++-+-...  .++..+.... +.  .|++||.||.|+..
T Consensus        68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~~  121 (191)
T cd01875          68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PN--VPILLVGTKKDLRN  121 (191)
T ss_pred             hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEeChhhhc
Confidence            22447889999999999766555443  2444444432 23  39999999999753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01892 Miro2 Miro2 subfamily

Probab=99.37  E-value=1.9e-11  Score=97.00  Aligned_cols=117  Identities=14%  Similarity=-0.006  Sum_probs=70.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|.+|+|||||++.+++....+....+ ............+ .+  ..+.++|++|...+....          
T Consensus         4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~----------   71 (169)
T cd01892           4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLN----------   71 (169)
T ss_pred             EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCcceEEEEEEE-CCeEEEEEEEecCCcccccccc----------
Confidence            379999999999999999999987642022211 1111122222333 33  457889999976542211          


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ..++..+|++++|+|++++-+...  ...++... ......|+++|.||.|...
T Consensus        72 -~~~~~~~d~~llv~d~~~~~s~~~--~~~~~~~~-~~~~~~p~iiv~NK~Dl~~  122 (169)
T cd01892          72 -DAELAACDVACLVYDSSDPKSFSY--CAEVYKKY-FMLGEIPCLFVAAKADLDE  122 (169)
T ss_pred             -hhhhhcCCEEEEEEeCCCHHHHHH--HHHHHHHh-ccCCCCeEEEEEEcccccc
Confidence             123578899999999864422221  12222222 1112349999999999754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.37  E-value=1.4e-11  Score=110.89  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc-----------------CCCCcceeEEEEEEEeeCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRTVLKDG   68 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~~~~   68 (285)
                      .+|+++|+.++|||||++.|+.......              +.                 ...+.|....+....+ .+
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            4899999999999999999974432111              10                 1236677777777777 67


Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCC
Q 023214           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (285)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D  148 (285)
                      ..++++||||+.++       ...+.    .....+|++++|+|+...+...++..+..+... +.+   ++++++||+|
T Consensus        80 ~~~~liDtPGh~~f-------~~~~~----~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~---~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHEQY-------TRNMA----TGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIR---HVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHHHH-------HHHHH----HHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCC---cEEEEEEecc
Confidence            88999999996532       12222    234578999999999777777776666655543 432   7889999999


Q ss_pred             CCCC
Q 023214          149 ELED  152 (285)
Q Consensus       149 ~~~~  152 (285)
                      ....
T Consensus       145 ~~~~  148 (406)
T TIGR02034       145 LVDY  148 (406)
T ss_pred             cccc
Confidence            8753

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.36  E-value=1.1e-11  Score=102.61  Aligned_cols=116  Identities=19%  Similarity=0.142  Sum_probs=75.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCC-------------CCcceeEE------------------------EEEE
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASS-------------SGVTSTCE------------------------MQRT   63 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-------------~~~t~~~~------------------------~~~~   63 (285)
                      +|+++|++|+|||||++.+..... ..+...             .|.|....                        ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC   79 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence            589999999999999999985322 111100             11111000                        0111


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214           64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (285)
Q Consensus        64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil  143 (285)
                      .. .+..++++||||+.++       .......+..  ..+|++++|+++..+++..+...+.++... +.    |++++
T Consensus        80 ~~-~~~~i~liDtpG~~~~-------~~~~~~~~~~--~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivv  144 (224)
T cd04165          80 EK-SSKLVTFIDLAGHERY-------LKTTLFGLTG--YAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVV  144 (224)
T ss_pred             ee-CCcEEEEEECCCcHHH-------HHHHHHhhcc--cCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEE
Confidence            22 4678999999997532       2222222211  357999999999878888888888887764 42    88999


Q ss_pred             EeCCCCCCC
Q 023214          144 FTGGDELED  152 (285)
Q Consensus       144 ~nk~D~~~~  152 (285)
                      +||+|....
T Consensus       145 vNK~D~~~~  153 (224)
T cd04165         145 VTKIDLAPA  153 (224)
T ss_pred             EECccccCH
Confidence            999998754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.36  E-value=1.5e-11  Score=110.46  Aligned_cols=118  Identities=16%  Similarity=0.248  Sum_probs=81.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc------cc----cc----cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRA------FK----SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~------~~----~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      ..+|+++|+.++|||||++.|++...      +.    ..    ....+.|.......... .+..++++||||+.++  
T Consensus        12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f--   88 (394)
T TIGR00485        12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY--   88 (394)
T ss_pred             eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH--
Confidence            38999999999999999999985411      00    00    01246777765555544 5678999999997532  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                           ...+    ......+|++++|+|+.......++..+..+... +-+   ++++++||+|....
T Consensus        89 -----~~~~----~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi~---~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        89 -----VKNM----ITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD  143 (394)
T ss_pred             -----HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEecccCCH
Confidence                 1122    2233567999999999877778777777776544 432   45578999998753

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.36  E-value=9.8e-12  Score=99.47  Aligned_cols=117  Identities=21%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+|+|++|+|||||++.+++...... ..+.  +........... .+..+.++||||..++.           ....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~   67 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVES-YYPT--IENTFSKIIRYKGQDYHLEIVDTAGQDEYS-----------ILPQ   67 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccc-cCcc--hhhhEEEEEEECCEEEEEEEEECCChHhhH-----------HHHH
Confidence            6899999999999999999997653221 1111  111111222221 12457899999975421           1112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+..+|++++|+|.+++.+... ..++..+....+ ....|++++.||+|...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT  120 (180)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence            23557899999999875433332 233344443322 12348999999999764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.36  E-value=1.4e-11  Score=112.74  Aligned_cols=120  Identities=14%  Similarity=0.179  Sum_probs=82.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc-----------------CCCCcceeEEEEEEEe
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRTVL   65 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~   65 (285)
                      .+..+|+++|+.++|||||++.|+.......              +.                 ...++|....+....+
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            3458999999999999999999985543211              10                 0135677777666666


Q ss_pred             eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (285)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n  145 (285)
                       .+..++++||||+.++       ...+    ......+|++++|+|+...+...++..+..+... +.+   ++++++|
T Consensus       105 -~~~~i~~iDTPGh~~f-------~~~~----~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~---~iIvvvN  168 (474)
T PRK05124        105 -EKRKFIIADTPGHEQY-------TRNM----ATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIK---HLVVAVN  168 (474)
T ss_pred             -CCcEEEEEECCCcHHH-------HHHH----HHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCC---ceEEEEE
Confidence             6788999999996431       1222    2234678999999999767766555555544433 432   7899999


Q ss_pred             CCCCCCC
Q 023214          146 GGDELED  152 (285)
Q Consensus       146 k~D~~~~  152 (285)
                      |+|....
T Consensus       169 KiD~~~~  175 (474)
T PRK05124        169 KMDLVDY  175 (474)
T ss_pred             eeccccc
Confidence            9998743

>PLN03126 Elongation factor Tu; Provisional

Probab=99.36  E-value=1.6e-11  Score=111.93  Aligned_cols=118  Identities=15%  Similarity=0.222  Sum_probs=84.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      ..+|+++|+.++|||||++.|++.....              ......+.|.........+ .+..++++||||+.++  
T Consensus        81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f--  157 (478)
T PLN03126         81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY--  157 (478)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH--
Confidence            4789999999999999999999632110              0112246677666666666 6788999999997532  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                           ...+    ......+|++++|+|+.....+..+..+..+... +.+   ++++++||+|....
T Consensus       158 -----~~~~----~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~  212 (478)
T PLN03126        158 -----VKNM----ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD  212 (478)
T ss_pred             -----HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH
Confidence                 2222    2334567999999999878888888777776554 432   47889999998753

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.35  E-value=1.4e-11  Score=113.65  Aligned_cols=117  Identities=15%  Similarity=0.241  Sum_probs=81.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc--cccc------------------CCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAF--KSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (285)
                      ..+|+|+|+.|+|||||.+.|+.....  ..+.                  ...+.+.........+ .+..++++||||
T Consensus        10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTPG   88 (526)
T PRK00741         10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTPG   88 (526)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECCC
Confidence            379999999999999999999731110  0000                  0124555555666777 788899999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.++.       ....    .++..+|++++|+|+.+++.......+..+... +    .|+++++||+|....
T Consensus        89 ~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-~----iPiiv~iNK~D~~~a  146 (526)
T PRK00741         89 HEDFS-------EDTY----RTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-D----TPIFTFINKLDRDGR  146 (526)
T ss_pred             chhhH-------HHHH----HHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCccccc
Confidence            87642       1122    234567999999999777777776666655442 2    289999999998764

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.35  E-value=3.8e-12  Score=97.76  Aligned_cols=112  Identities=21%  Similarity=0.207  Sum_probs=69.5

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        24 lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      ++|++|+|||||+|.|++.........+   |. ..+......   .+..+.++|+||..+...           .....
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~---t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYET---TI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRS-----------LRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCccccc---ch-hheeeEEEEECCEEEEEEEEecCChHHHHh-----------HHHHH
Confidence            5899999999999999987753222211   21 222222221   256799999999764321           11234


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHH--HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAAL--HSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++.+|++++|+|+....+......+  .......  ....|+++++||.|....
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~  117 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEE  117 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEeccccccc
Confidence            6778999999999755444443332  1222221  223499999999998755

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=8.4e-12  Score=117.50  Aligned_cols=118  Identities=22%  Similarity=0.309  Sum_probs=91.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccc--cC--------------CCCcceeEEEEEEEeeCC-ceEEEEeCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR--AS--------------SSGVTSTCEMQRTVLKDG-QVVNVIDTPGLFD   81 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~--~~--------------~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~   81 (285)
                      .++|+++||..+|||||..+|+-.....+.  ..              ..|.|+.....+..| .+ ..+++|||||+.|
T Consensus        10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGHVD   88 (697)
T COG0480          10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGHVD   88 (697)
T ss_pred             ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCccc
Confidence            379999999999999999998833322111  11              137888888888888 64 9999999999999


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      |..       ++.+.    +.-.|+++.|+|+...+.+.....|+.+...   .+  |.++++||+|....+
T Consensus        89 Ft~-------EV~rs----lrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a~  144 (697)
T COG0480          89 FTI-------EVERS----LRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGAD  144 (697)
T ss_pred             cHH-------HHHHH----HHhhcceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECccccccC
Confidence            742       33333    4455999999999889999998888888765   33  899999999998664

>cd04129 Rho2 Rho2 subfamily

Probab=99.35  E-value=1.5e-11  Score=99.22  Aligned_cols=113  Identities=19%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+|+|++|+|||||++.++...... ...   .|....+. .... .+  ..+.++||||...+.....         
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~---------   67 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYH---PTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLRP---------   67 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc-ccC---CcccceEEEEEEE-CCEEEEEEEEECCCChhccccch---------
Confidence            589999999999999999998544322 111   12211111 2222 22  4478999999764321111         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                        ..+..+|++++++++++.-+...  ..++..+..... .  .|+++|.||.|...
T Consensus        68 --~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~  119 (187)
T cd04129          68 --LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQ  119 (187)
T ss_pred             --hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhh
Confidence              13567899999999864433333  245666665433 2  39999999999743

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.35  E-value=3.4e-11  Score=93.30  Aligned_cols=117  Identities=23%  Similarity=0.262  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.|++.. ++.... .+.+.......... .+  ..+.++||||..+...    ...      
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~----~~~------   68 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRA----IRR------   68 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECCCcccchH----HHH------
Confidence            689999999999999999999887 433222 23333333333444 45  6688999999654311    111      


Q ss_pred             hhccCCccEEEEEEeCCCC-CC--HHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSR-FS--QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~-~~--~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       .....++.+++++|.... .+  .........+......  ..|+++++||.|....
T Consensus        69 -~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        69 -LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA  123 (161)
T ss_pred             -HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence             112334566666665322 11  1122333334433221  2389999999998764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.34  E-value=2.6e-11  Score=110.05  Aligned_cols=117  Identities=21%  Similarity=0.275  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c---------------cCCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|+.++|||||++.|+.......              +               ....+.|.........+ .+.
T Consensus         7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~~   85 (426)
T TIGR00483         7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DKY   85 (426)
T ss_pred             eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CCe
Confidence            37999999999999999999984321100              0               01236777777777766 678


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~iil~nk  146 (285)
                      .++|+||||+.++           ...+...+..+|++++|+|+.++   ........+..+ ..++.   .++++++||
T Consensus        86 ~i~iiDtpGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVviNK  150 (426)
T TIGR00483        86 EVTIVDCPGHRDF-----------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAINK  150 (426)
T ss_pred             EEEEEECCCHHHH-----------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEEEC
Confidence            8999999996431           11222335678999999999755   333333333333 33343   279999999


Q ss_pred             CCCCC
Q 023214          147 GDELE  151 (285)
Q Consensus       147 ~D~~~  151 (285)
                      +|...
T Consensus       151 ~Dl~~  155 (426)
T TIGR00483       151 MDSVN  155 (426)
T ss_pred             hhccC
Confidence            99864

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.33  E-value=2.7e-11  Score=115.00  Aligned_cols=119  Identities=14%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc-----------------CCCCcceeEEEEEEEe
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRTVL   65 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~   65 (285)
                      .+..+|+++|+.++|||||++.|+.......              +.                 ...+.|....+....+
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            3447999999999999999999996543211              10                 0135666666666766


Q ss_pred             eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (285)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n  145 (285)
                       .+..++|+||||+.++       ...+.    .....+|++++|+|+...+...+...+..+... +.+   ++++++|
T Consensus       102 -~~~~~~liDtPG~~~f-------~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~---~iivvvN  165 (632)
T PRK05506        102 -PKRKFIVADTPGHEQY-------TRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIR---HVVLAVN  165 (632)
T ss_pred             -CCceEEEEECCChHHH-------HHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCC---eEEEEEE
Confidence             6788999999996421       12222    234578999999999767766666555555443 433   7889999


Q ss_pred             CCCCCC
Q 023214          146 GGDELE  151 (285)
Q Consensus       146 k~D~~~  151 (285)
                      |+|...
T Consensus       166 K~D~~~  171 (632)
T PRK05506        166 KMDLVD  171 (632)
T ss_pred             eccccc
Confidence            999874

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.33  E-value=2.2e-11  Score=94.34  Aligned_cols=129  Identities=17%  Similarity=0.239  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   91 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~   91 (285)
                      .+|+++|+.|+||||+++.+........     ..+..+   .|+...+.+..+..+..+++++|||+..+..       
T Consensus        11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f-------   83 (187)
T COG2229          11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF-------   83 (187)
T ss_pred             eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH-------
Confidence            6999999999999999999997764222     122233   7788888888884558899999999875421       


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC-hhcHHHHhhh
Q 023214           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR  163 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~-~~~l~~~l~~  163 (285)
                          .+.....++.++++++|.+.+.+......+..+.....    .|++|..||.|+.... .+.+.+++..
T Consensus        84 ----m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~  148 (187)
T COG2229          84 ----MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL  148 (187)
T ss_pred             ----HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence                22233667899999999876666666777777766532    3999999999987542 3567777763

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.32  E-value=2.9e-11  Score=101.61  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|..|+|||||++.+++.... ....+.......  ..+.. .+  ..+.|+||+|..++.        .+   ..
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~--k~~~i-~~~~~~l~I~Dt~G~~~~~--------~~---~~   66 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHR--KLYSI-RGEVYQLDILDTSGNHPFP--------AM---RR   66 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEE--EEEEE-CCEEEEEEEEECCCChhhh--------HH---HH
Confidence            7999999999999999999876532 222111111111  12222 33  457899999976432        11   11


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHh-------CccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLF-------GKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~-------~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|++++-+.... .++..+....       ......|++++.||+|...
T Consensus        67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            235678999999999755443332 3334443321       0112349999999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.32  E-value=5.5e-12  Score=100.62  Aligned_cols=116  Identities=14%  Similarity=0.135  Sum_probs=78.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+++|+.||||||+++.|.......     ..+|.......+.+ .+..++++|.+|.....           ..+
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~~-----------~~w   75 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQESFR-----------PLW   75 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGGGG-----------GGG
T ss_pred             cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccccc-----------ccc
Confidence            44899999999999999999998654322     23344555566666 78899999999964321           133


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|+++||+|..+.-.-.  .....+...+...  ...|++|+.||.|....
T Consensus        76 ~~y~~~~~~iIfVvDssd~~~l~--e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~  130 (175)
T PF00025_consen   76 KSYFQNADGIIFVVDSSDPERLQ--EAKEELKELLNDPELKDIPILILANKQDLPDA  130 (175)
T ss_dssp             GGGHTTESEEEEEEETTGGGGHH--HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred             eeeccccceeEEEEecccceeec--ccccchhhhcchhhcccceEEEEeccccccCc
Confidence            45678899999999986332211  1222333333321  13599999999997754

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.32  E-value=8.8e-12  Score=103.57  Aligned_cols=142  Identities=15%  Similarity=0.099  Sum_probs=90.8

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-----------CCcceeEEEEEEEeeCCce
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----------SGVTSTCEMQRTVLKDGQV   70 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-----------~~~t~~~~~~~~~~~~~~~   70 (285)
                      ++.++.+++||.++.|  ..++|+||||||||||+++|+|-..+..|...           ........+.++....+..
T Consensus        13 ~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~   90 (258)
T COG1120          13 GGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG   90 (258)
T ss_pred             CCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence            4678899999999999  89999999999999999999998877665321           1123355566666545667


Q ss_pred             EEEEeCCCCCCC------CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214           71 VNVIDTPGLFDF------SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-  143 (285)
Q Consensus        71 ~~liDtpG~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-  143 (285)
                      +++.|..-++.+      ......-...+..++...    +..-+....-+.+|+++++++-..+.+...+   +++++ 
T Consensus        91 ~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~----~~~~la~r~~~~LSGGerQrv~iArALaQ~~---~iLLLD  163 (258)
T COG1120          91 LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL----GLEHLADRPVDELSGGERQRVLIARALAQET---PILLLD  163 (258)
T ss_pred             cEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHh----CcHHHhcCcccccChhHHHHHHHHHHHhcCC---CEEEeC
Confidence            888885443321      111111111232233222    1111121222578999999888888776655   77877 


Q ss_pred             --EeCCCCCCC
Q 023214          144 --FTGGDELED  152 (285)
Q Consensus       144 --~nk~D~~~~  152 (285)
                        +|++|....
T Consensus       164 EPTs~LDi~~Q  174 (258)
T COG1120         164 EPTSHLDIAHQ  174 (258)
T ss_pred             CCccccCHHHH
Confidence              899996543

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.32  E-value=2.4e-11  Score=113.19  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFDF   82 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~~~   82 (285)
                      +.|+++|+.++|||||+|.|++......  .+.+.|.........+.                 ....++++||||+..+
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            6899999999999999999998764221  12233333222222110                 0123889999997643


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .           ......+..+|++++|+|+.+.+...+...+..+... +  .  |+++++||+|...
T Consensus        83 ~-----------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~--v--piIVv~NK~Dl~~  135 (590)
T TIGR00491        83 T-----------NLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K--T--PFVVAANKIDRIP  135 (590)
T ss_pred             H-----------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C--C--CEEEEEECCCccc
Confidence            1           1112345678999999999877777777777666542 2  2  8999999999764

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.32  E-value=4.6e-11  Score=90.50  Aligned_cols=115  Identities=16%  Similarity=0.199  Sum_probs=83.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..||.++|.++|||||+++.++|...  .   ...+|...+.....+ .+..++++|..|.-           .++.++.
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~~--~---~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----------~lr~~W~   78 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGEDT--D---TISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----------TLRSYWK   78 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCCc--c---ccCCccceeeEEEEe-cceEEEEEEcCCcc-----------hhHHHHH
Confidence            48999999999999999999998773  2   234577777778888 88999999998853           4566777


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC-cc-ccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG-KK-IFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~iil~nk~D~~~~  152 (285)
                      ++|...|++++|+|..++..-.+-  ...++..+. .. ...|++++.||.|....
T Consensus        79 nYfestdglIwvvDssD~~r~~e~--~~~L~~lL~eerlaG~~~Lvlank~dl~~~  132 (185)
T KOG0073|consen   79 NYFESTDGLIWVVDSSDRMRMQEC--KQELTELLVEERLAGAPLLVLANKQDLPGA  132 (185)
T ss_pred             HhhhccCeEEEEEECchHHHHHHH--HHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence            889999999999998755443331  112222221 11 12389999999997743

>PLN00023 GTP-binding protein; Provisional

Probab=99.31  E-value=3.1e-11  Score=103.47  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--------------CCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------DGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~liDtpG~~~~~~~   85 (285)
                      .+|+|+|.+|+|||||++.+++...........+.+...  ..+.+.              ....+.|+||+|...+.  
T Consensus        22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~i--k~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr--   97 (334)
T PLN00023         22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGV--KHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK--   97 (334)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEE--EEEEECCcccccccccccCCceEEEEEEECCCChhhh--
Confidence            799999999999999999999765322111112222211  222221              12348899999975432  


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc----------cccCeEEEEEeCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~----------~~~~~~iil~nk~D~~~  151 (285)
                               .+...++.+++++|+|+|++++-+... ..++..+......          ....+++||.||+|+..
T Consensus        98 ---------sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         98 ---------DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             ---------hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence                     233345889999999999976555443 3455556554210          01248999999999754

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.31  E-value=1.9e-11  Score=92.22  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|||.+|+|||||+-.+.....-+-.+...|+.....+..+.- ...++.||||.|...|+.           ...+
T Consensus        12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErFRt-----------LTpS   79 (209)
T KOG0080|consen   12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQERFRT-----------LTPS   79 (209)
T ss_pred             EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHhhhc-----------cCHh
Confidence            7999999999999999999886553222222234443333333322 345699999999765432           3345


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +|+++.++++|+|++.+-+.... .|+..+..... ....-.++|.||+|..+
T Consensus        80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-n~diikmlVgNKiDkes  131 (209)
T KOG0080|consen   80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST-NPDIIKMLVGNKIDKES  131 (209)
T ss_pred             HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC-CccHhHhhhcccccchh
Confidence            68999999999999756444333 34445544433 22223456799999763

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.31  E-value=4.6e-11  Score=108.50  Aligned_cols=116  Identities=21%  Similarity=0.236  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|+.++|||||+..|+.......                             .....+.|....+....+ .+.
T Consensus         7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~~   85 (446)
T PTZ00141          7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY   85 (446)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CCe
Confidence            37899999999999999998874221100                             001246777777777777 788


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCccccCeEEE
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .++|+||||+.++       ...+    ......+|++++|+|+....       .+..+..+..+..+ |-+   ++|+
T Consensus        86 ~i~lIDtPGh~~f-------~~~~----~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~---~iiv  150 (446)
T PTZ00141         86 YFTIIDAPGHRDF-------IKNM----ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVK---QMIV  150 (446)
T ss_pred             EEEEEECCChHHH-------HHHH----HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCC---eEEE
Confidence            9999999996542       2222    23345779999999996554       35666666665553 543   6789


Q ss_pred             EEeCCCCC
Q 023214          143 VFTGGDEL  150 (285)
Q Consensus       143 l~nk~D~~  150 (285)
                      ++||+|..
T Consensus       151 ~vNKmD~~  158 (446)
T PTZ00141        151 CINKMDDK  158 (446)
T ss_pred             EEEccccc
Confidence            99999953

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.6e-11  Score=97.02  Aligned_cols=116  Identities=21%  Similarity=0.201  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ++|+++|.+|+|||-|+..++-...-..  +..++.+......... ++  .+..||||.|...           ++...
T Consensus        15 FKiVliGDS~VGKsnLlsRftrnEF~~~--SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQER-----------yrAit   80 (222)
T KOG0087|consen   15 FKIVLIGDSAVGKSNLLSRFTRNEFSLE--SKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQER-----------YRAIT   80 (222)
T ss_pred             EEEEEeCCCccchhHHHHHhcccccCcc--cccceeEEEEeeceee-cCcEEEEeeecccchhh-----------hcccc
Confidence            7899999999999999999885553222  2222333333444444 33  4578999999653           33455


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +.+|+++.+.++|+|++.+.+-.. ..||..++....+.+  ++++|.||.|+..
T Consensus        81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~  133 (222)
T KOG0087|consen   81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH  133 (222)
T ss_pred             chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence            677999999999999976766554 467777777655544  8888899999764

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.29  E-value=4.1e-11  Score=110.15  Aligned_cols=120  Identities=23%  Similarity=0.306  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|.+++|||||+|.|+|.....+  ...|+|+........+ .+..+.++|.||..+...-..  .+.+.+-+..
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~Vg--NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~--DE~Var~~ll   78 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVG--NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSE--DEKVARDFLL   78 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceec--CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCc--hHHHHHHHHh
Confidence            5799999999999999999999987443  4578999988888888 788899999999987543221  2233332222


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       -..+|+++-|+|++ .+...-.-.++++..  |.    |+++++|.+|....
T Consensus        79 -~~~~D~ivnVvDAt-nLeRnLyltlQLlE~--g~----p~ilaLNm~D~A~~  123 (653)
T COG0370          79 -EGKPDLIVNVVDAT-NLERNLYLTLQLLEL--GI----PMILALNMIDEAKK  123 (653)
T ss_pred             -cCCCCEEEEEcccc-hHHHHHHHHHHHHHc--CC----CeEEEeccHhhHHh
Confidence             35689999999996 433333333333221  32    89999999998755

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.29  E-value=6.4e-11  Score=111.04  Aligned_cols=117  Identities=22%  Similarity=0.274  Sum_probs=79.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc------ccc-------CCCCcceeEEEEEEEee--C--CceEEEEeCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFK------SRA-------SSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD   81 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~------~~~-------~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~~   81 (285)
                      .++|+++|+.++|||||++.|+......      ...       ...++|.........|.  +  ...++||||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4799999999999999999998643111      101       12366666555555552  2  25689999999876


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +.       ....    .++..+|++++|+|+.++.+..+...+..+...   ..  |+++++||+|...
T Consensus        83 F~-------~~v~----~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~---~i--piIiViNKiDl~~  136 (595)
T TIGR01393        83 FS-------YEVS----RSLAACEGALLLVDAAQGIEAQTLANVYLALEN---DL--EIIPVINKIDLPS  136 (595)
T ss_pred             HH-------HHHH----HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc---CC--CEEEEEECcCCCc
Confidence            42       2222    235567999999999877777766555444331   22  8999999999754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.29  E-value=4.4e-11  Score=98.67  Aligned_cols=113  Identities=19%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             eEEEEEcCCCCCHHHHHHH-HhCCcccccccCCCCcceeEEEEEEEe---eCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNS-ILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~-l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .+|+++|++|+|||||++. +.|... .. .   ..|....+....+   .....+.++||||...+.        .+. 
T Consensus        10 ~kv~liG~~g~GKTtLi~~~~~~~~~-~~-~---~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~--------~~~-   75 (215)
T PTZ00132         10 FKLILVGDGGVGKTTFVKRHLTGEFE-KK-Y---IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG--------GLR-   75 (215)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhCCCC-CC-C---CCccceEEEEEEEEECCeEEEEEEEECCCchhhh--------hhh-
Confidence            7999999999999999965 544432 11 1   1122222222211   124568899999965431        111 


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                        ..++...+++++|+|+.++.+... ..++..+..... .  .|++++.||+|...
T Consensus        76 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         76 --DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVKD  127 (215)
T ss_pred             --HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCcc
Confidence              223557799999999975655443 234444444332 2  38889999999753

>PRK13351 elongation factor G; Reviewed

Probab=99.29  E-value=3.7e-11  Score=115.30  Aligned_cols=117  Identities=20%  Similarity=0.282  Sum_probs=84.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-------cc---------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-------RA---------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-------~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      ..+|+++|+.|+|||||++.|+.......       +.         ...+.|.........+ .+..+++|||||+.++
T Consensus         8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~df   86 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHIDF   86 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHHH
Confidence            47999999999999999999985321100       00         0245666666777777 7889999999998653


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .       ..    ...++..+|++++|+|+..+........+..+... +    .|+++++||+|....
T Consensus        87 ~-------~~----~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~~~  140 (687)
T PRK13351         87 T-------GE----VERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-G----IPRLIFINKMDRVGA  140 (687)
T ss_pred             H-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCCCCCC
Confidence            2       11    22335667999999999877777777777665443 2    289999999998764

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.29  E-value=1.9e-11  Score=96.00  Aligned_cols=116  Identities=22%  Similarity=0.283  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      +|+++|+.|+|||||++.+.+...........+.  .......... ....+.++|+||...+        ..+.   ..
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~---~~   67 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVSIDGKPVNLEIWDTSGQERF--------DSLR---DI   67 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEEETTEEEEEEEEEETTSGGG--------HHHH---HH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccc--ccccccccccccccccccccccccccc--------cccc---cc
Confidence            6899999999999999999976632221111112  2222233331 1345899999996432        1122   22


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .+..+|++++|+|.+++-+-.. ..++..+....+...  |++++.||.|...
T Consensus        68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~--~iivvg~K~D~~~  118 (162)
T PF00071_consen   68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDI--PIIVVGNKSDLSD  118 (162)
T ss_dssp             HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTS--EEEEEEETTTGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccc--cceeeeccccccc
Confidence            3677899999999975544333 355666666654223  9999999999765

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.28  E-value=3.5e-11  Score=97.90  Aligned_cols=109  Identities=18%  Similarity=0.138  Sum_probs=70.2

Q ss_pred             EcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEE--EEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 023214           25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (285)
Q Consensus        25 vG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (285)
                      +|..|+|||||++.++... +....   .+|....+..  +.+. ....+.|+||||...+.           .....++
T Consensus         1 vG~~~vGKTsLi~r~~~~~-f~~~~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~-----------~l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGE-FEKKY---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG-----------GLRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCC-CCCCC---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhh-----------hhhHHHh
Confidence            6999999999999998544 22211   2233333322  2221 24568999999975432           1222357


Q ss_pred             CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          102 DGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       102 ~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++|++++|+|++++.+.... .++..+.... ..  .|+++|.||+|+..
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~--~piilvgNK~Dl~~  113 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-EN--IPIVLCGNKVDVKD  113 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccccc
Confidence            889999999999866555443 4555565543 23  39999999999753

Ran is involved in the active transport of proteins through nuclear pores.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.28  E-value=4.1e-11  Score=100.37  Aligned_cols=124  Identities=19%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      -.|+|||-+++|||||+|+|....+-.  .....+|..+....+.+.+...++|-|.||+......+.-++..+.+.+..
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkV--a~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKV--AHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcc--cccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            578999999999999999999777522  223345666667777774556699999999987666666677777777655


Q ss_pred             ccCCccEEEEEEeCCCCC--CHHH-HHH----HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRF--SQEE-EAA----LHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~--~~~~-~~~----l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      |    ..++||+|.+...  ++-+ ...    +++..+.+..   +|.+||.||+|..+.
T Consensus       275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~---rp~liVaNKiD~~ea  327 (366)
T KOG1489|consen  275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLAD---RPALIVANKIDLPEA  327 (366)
T ss_pred             h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhcc---CceEEEEeccCchhH
Confidence            5    7999999996441  3222 222    2223333333   489999999998644

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=4.2e-11  Score=94.93  Aligned_cols=117  Identities=19%  Similarity=0.190  Sum_probs=82.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|.+|+|||+++-.+.....-++-.+.  ..+......+.. ++  ..+.+|||.|...           +...
T Consensus        12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sT--iGIDFk~kti~l-~g~~i~lQiWDtaGQer-----------f~ti   77 (207)
T KOG0078|consen   12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIST--IGIDFKIKTIEL-DGKKIKLQIWDTAGQER-----------FRTI   77 (207)
T ss_pred             EEEEEEECCCCCchhHhhhhhhhccCcCCccce--EEEEEEEEEEEe-CCeEEEEEEEEcccchh-----------HHHH
Confidence            379999999999999999999866542222222  222333334444 33  3488999999653           3334


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +..++++++++++|+|+.+..|-.. ..|++.+.+.-.+.+  +.++|.||+|...
T Consensus        78 ~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~  131 (207)
T KOG0078|consen   78 TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEE  131 (207)
T ss_pred             HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeeccccccc
Confidence            4556889999999999976655444 568888888755555  9999999999765

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.27  E-value=9.1e-11  Score=110.10  Aligned_cols=118  Identities=21%  Similarity=0.280  Sum_probs=79.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeEEEEEEEee----CCceEEEEeCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLFD   81 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtpG~~~   81 (285)
                      .++|+++|+.++|||||+..|+........             ....+.|.........|.    .+..++||||||+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            379999999999999999999854211000             012355665555555442    145689999999876


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.       ..+.+    ++..+|++++|+|+.++....+...+..+...   ..  |+++++||+|....
T Consensus        87 F~-------~~v~~----sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~---~l--piIvViNKiDl~~a  141 (600)
T PRK05433         87 FS-------YEVSR----SLAACEGALLVVDASQGVEAQTLANVYLALEN---DL--EIIPVLNKIDLPAA  141 (600)
T ss_pred             HH-------HHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CC--CEEEEEECCCCCcc
Confidence            42       22222    34567999999999877777766555554331   22  89999999997643

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.27  E-value=7e-11  Score=92.65  Aligned_cols=108  Identities=23%  Similarity=0.177  Sum_probs=70.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|+++|++|+|||||++.++.... .....+.+..   ....+.. .+  ..+.++||+|....                
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~~~~~---~~~~i~~-~~~~~~l~i~D~~g~~~~----------------   60 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSY-VQLESPEGGR---FKKEVLV-DGQSHLLLIRDEGGAPDA----------------   60 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCC-CCCCCCCccc---eEEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence            799999999999999998775542 2222121111   1122333 44  44889999997531                


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      .++..+|++++|+|.+++-+-.. ..++..+..... ....|++++.||.|..
T Consensus        61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~  112 (158)
T cd04103          61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS  112 (158)
T ss_pred             hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence            12356799999999987766665 456666655422 1234899999998864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.26  E-value=8.1e-11  Score=110.05  Aligned_cols=113  Identities=19%  Similarity=0.234  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFDF   82 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~~~   82 (285)
                      +.|+++|+.++|||||+|.|.|.....  ....+.|.........+.                 .-..++++||||+.++
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            799999999999999999999875422  122233333222211110                 0012789999998754


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ..           .....+..+|++++|+|+.+++.......+..+... +    .|+++++||+|..
T Consensus        85 ~~-----------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-~----vpiIvviNK~D~~  136 (586)
T PRK04004         85 TN-----------LRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-K----TPFVVAANKIDRI  136 (586)
T ss_pred             HH-----------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-C----CCEEEEEECcCCc
Confidence            21           111234568999999999877777777777766542 2    2899999999975

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.1e-10  Score=87.08  Aligned_cols=118  Identities=18%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|++||..|+|||.|++.++....|+......|+..-  +..++.. ...++.+|||.|..           .++....
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfm--iktvev~gekiklqiwdtagqe-----------rfrsitq   74 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM--IKTVEVNGEKIKLQIWDTAGQE-----------RFRSITQ   74 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEE--EEEEEECCeEEEEEEeeccchH-----------HHHHHHH
Confidence            68999999999999999999977766554433343333  3334441 23458999999954           3444555


Q ss_pred             hccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++++.+|++++|+|++..-+.. --.|+..+.......+  -.|+|.||.|..+.
T Consensus        75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr  127 (213)
T KOG0095|consen   75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR  127 (213)
T ss_pred             HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh
Confidence            6788999999999986554432 3477888887765554  56788999997654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.26  E-value=1.4e-10  Score=95.79  Aligned_cols=125  Identities=15%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+|+|+.|+||||..+.|.+...| ......++|.......+.......+.+||.||..++...-.      .......
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~------~~~~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF------NSQREEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH------TCCHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc------cccHHHH
Confidence            6899999999999999999987743 44555677887777777664567899999999986532210      0001123


Q ss_pred             cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..+++++||+|+. ..+...-......+..........++.+++.|+|.+..
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~  126 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE  126 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence            67789999999996 34443333333333332221223389999999998764

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.26  E-value=4e-11  Score=116.68  Aligned_cols=118  Identities=20%  Similarity=0.276  Sum_probs=82.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEee---------CCceEEE
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------DGQVVNV   73 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~l   73 (285)
                      ...++|+++|+.++|||||++.|++........              ...+.|.........+.         .+..+++
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            345799999999999999999999643321100              11244444433344442         1456999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      +||||+.++       ..+    +..++..+|++++|+|+...+...+...++.+... +  .  |+++++||+|..
T Consensus        97 iDtPG~~~f-------~~~----~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~--~--p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDF-------SSE----VTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R--I--RPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhH-------HHH----HHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C--C--CEEEEEEChhhh
Confidence            999998763       122    23445678999999999878888888888777653 2  2  899999999987

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.26  E-value=5.8e-11  Score=115.74  Aligned_cols=119  Identities=19%  Similarity=0.288  Sum_probs=82.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEee---------------
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------------   66 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------   66 (285)
                      ....++|+|+|+.++|||||++.|+.........              ...+.|......+..|.               
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            4456899999999999999999998544321110              01245555444444442               


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (285)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk  146 (285)
                      .+..++++||||+.++       ..++.    .++..+|++++|+|+..++...+...++.+...   ..  |+++++||
T Consensus        96 ~~~~inliDtPGh~dF-------~~e~~----~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~~--p~i~~iNK  159 (843)
T PLN00116         96 NEYLINLIDSPGHVDF-------SSEVT----AALRITDGALVVVDCIEGVCVQTETVLRQALGE---RI--RPVLTVNK  159 (843)
T ss_pred             CceEEEEECCCCHHHH-------HHHHH----HHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---CC--CEEEEEEC
Confidence            1456899999998764       22232    234567999999999888888888877776553   22  89999999


Q ss_pred             CCCC
Q 023214          147 GDEL  150 (285)
Q Consensus       147 ~D~~  150 (285)
                      +|..
T Consensus       160 ~D~~  163 (843)
T PLN00116        160 MDRC  163 (843)
T ss_pred             Cccc
Confidence            9987

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.7e-10  Score=90.08  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|..++|||||++..+-... .. .....+.+........+. ....+.||||.|..           .++..+.
T Consensus        23 ~KlVflGdqsVGKTslItRf~yd~f-d~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE-----------RFrslip   89 (221)
T KOG0094|consen   23 YKLVFLGDQSVGKTSLITRFMYDKF-DN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RFRSLIP   89 (221)
T ss_pred             EEEEEEccCccchHHHHHHHHHhhh-cc-cccceeeeEEEEEEEEEcCcEEEEEEEecccHH-----------HHhhhhh
Confidence            6899999999999999999984442 21 111112222222223331 23458899999964           3445566


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcc-ccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~iil~nk~D~~~~  152 (285)
                      .+++++.++++|+|+.++-|-+. .+|++-+...-|.. +  .+++|.||.|+.+.
T Consensus        90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v--iI~LVGnKtDL~dk  143 (221)
T KOG0094|consen   90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV--IIFLVGNKTDLSDK  143 (221)
T ss_pred             hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce--EEEEEcccccccch
Confidence            77899999999999987777654 67888777766653 3  67778999998876

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=5e-11  Score=106.32  Aligned_cols=117  Identities=18%  Similarity=0.275  Sum_probs=94.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ++.|-++|+...|||||+..|-+..+..  .-.+|+|.+.+.+.+..+.|..++++||||+..|..           .-.
T Consensus       153 pPVVTiMGHVDHGKTTLLD~lRks~VAA--~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a-----------MRa  219 (683)
T KOG1145|consen  153 PPVVTIMGHVDHGKTTLLDALRKSSVAA--GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA-----------MRA  219 (683)
T ss_pred             CCeEEEeecccCChhhHHHHHhhCceeh--hhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH-----------HHh
Confidence            3899999999999999999998877633  334789999999999998899999999999875421           111


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      .-....|.+++|+.+.+++-+.....+..++..   .+  |+++.+||+|....+
T Consensus       220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a~  269 (683)
T KOG1145|consen  220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGAN  269 (683)
T ss_pred             ccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCCC
Confidence            223446899999999889999998888888775   33  999999999987654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.24  E-value=5e-11  Score=90.24  Aligned_cols=101  Identities=22%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .||+|||++|+|||||+++|.|.....      .-|..     +.+ .+   .+|||||-+-   .......    .+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~-----i~~-~~---~~IDTPGEyi---E~~~~y~----aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQA-----IEY-YD---NTIDTPGEYI---ENPRFYH----ALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCc------Cccce-----eEe-cc---cEEECChhhe---eCHHHHH----HHHH
Confidence            589999999999999999999876422      12222     222 11   4599999652   2222222    2223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ....+|.+++|.|++.+.+.---    .+...|..    |+|=|+||.|..
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP----~fa~~f~~----pvIGVITK~Dl~  102 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPP----GFASMFNK----PVIGVITKIDLP  102 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCc----hhhcccCC----CEEEEEECccCc
Confidence            33467999999999644222111    12233432    899999999988

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.24  E-value=2.5e-10  Score=94.30  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-C--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|+.|+|||||++.+.+........    +|....+...... .  ...+.++||+|..+           +...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~   70 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSL   70 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHH
Confidence            799999999999999999999877533211    1222222222221 1  34588999999653           3334


Q ss_pred             HhhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++.++++++++++...  +.......+...+....+...  |++++.||.|....
T Consensus        71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~--~iilv~nK~Dl~~~  126 (219)
T COG1100          71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV--PILLVGNKIDLFDE  126 (219)
T ss_pred             HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCc--eEEEEecccccccc
Confidence            4456889999999999863  233333455555565543223  89999999998865

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=4.9e-10  Score=86.84  Aligned_cols=119  Identities=16%  Similarity=0.154  Sum_probs=79.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..++.++|.+|+|||.|+...+.....+.-....|  +......+... ..-++.||||.|...+           ....
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiG--vefg~r~~~id~k~IKlqiwDtaGqe~f-----------rsv~   72 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIG--VEFGARMVTIDGKQIKLQIWDTAGQESF-----------RSVT   72 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceee--eeeceeEEEEcCceEEEEEEecCCcHHH-----------HHHH
Confidence            37899999999999999999998775333222222  22223333331 2355899999997643           3334


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+|.++-+.|+|+|++.+-|... ..||.-++....+.  .-++++.||+|+...
T Consensus        73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~r  126 (216)
T KOG0098|consen   73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEAR  126 (216)
T ss_pred             HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhcc
Confidence            456889999999999986655444 35666666653332  256666999997754

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.23  E-value=1.6e-10  Score=104.03  Aligned_cols=120  Identities=17%  Similarity=0.240  Sum_probs=75.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeEEEEEEEee--------------------C-----CceE
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK--------------------D-----GQVV   71 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------------~-----~~~~   71 (285)
                      +..+|+++|+.|+|||||+..|.+..... ......+.|....+....+.                    .     ...+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            44899999999999999999997742110 01112345555443221110                    0     2578


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      +|+||||..++       ..    .+......+|++++|+|+.++. .......+..+.. .+.+   ++++++||+|..
T Consensus        88 ~liDtPG~~~f-------~~----~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~---~iiVVlNK~Dl~  152 (411)
T PRK04000         88 SFVDAPGHETL-------MA----TMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIK---NIVIVQNKIDLV  152 (411)
T ss_pred             EEEECCCHHHH-------HH----HHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCC---cEEEEEEeeccc
Confidence            99999995421       11    2222334679999999997665 5665666655543 2322   789999999987


Q ss_pred             CC
Q 023214          151 ED  152 (285)
Q Consensus       151 ~~  152 (285)
                      ..
T Consensus       153 ~~  154 (411)
T PRK04000        153 SK  154 (411)
T ss_pred             cc
Confidence            54

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.23  E-value=1.1e-10  Score=105.22  Aligned_cols=119  Identities=16%  Similarity=0.211  Sum_probs=74.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeEEEEEEE--------------e-----------eCCceEE
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTV--------------L-----------KDGQVVN   72 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~~   72 (285)
                      ..+|+++|+.++|||||++.|.+...... .....+.|....+....              .           ..+..++
T Consensus         4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   83 (406)
T TIGR03680         4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS   83 (406)
T ss_pred             eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence            37999999999999999999987532110 01122344443322111              0           0145799


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++||||+.++       ...+    ......+|++++|+|+.+.. .......+..+.. ++..   ++++++||+|...
T Consensus        84 liDtPGh~~f-------~~~~----~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~---~iIVvvNK~Dl~~  148 (406)
T TIGR03680        84 FVDAPGHETL-------MATM----LSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIK---NIVIVQNKIDLVS  148 (406)
T ss_pred             EEECCCHHHH-------HHHH----HHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCC---eEEEEEEccccCC
Confidence            9999996432       2222    22234679999999997665 5555555655533 3432   7899999999875


Q ss_pred             C
Q 023214          152 D  152 (285)
Q Consensus       152 ~  152 (285)
                      .
T Consensus       149 ~  149 (406)
T TIGR03680       149 K  149 (406)
T ss_pred             H
Confidence            4

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01882 BMS1 Bms1

Probab=99.23  E-value=2.8e-10  Score=94.43  Aligned_cols=110  Identities=20%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ...|+++|++|+|||||+|.|++...........+.      .......+..++++||||..          ..+...  
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~~~~~~~i~~vDtPg~~----------~~~l~~--  100 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVVTGKKRRLTFIECPNDI----------NAMIDI--  100 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEEecCCceEEEEeCCchH----------HHHHHH--
Confidence            378999999999999999999976432111111111      11112257789999999742          122222  


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                        ...+|.+++|+|+...+...+...+..+... +.+   .+++++||+|....
T Consensus       101 --ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~p---~vi~VvnK~D~~~~  148 (225)
T cd01882         101 --AKVADLVLLLIDASFGFEMETFEFLNILQVH-GFP---RVMGVLTHLDLFKK  148 (225)
T ss_pred             --HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CCC---eEEEEEeccccCCc
Confidence              3456999999999777887777777766553 321   35569999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.4e-10  Score=90.34  Aligned_cols=115  Identities=24%  Similarity=0.278  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+|+|.+|+|||||+-...-.. |...   ...|+...+...... .+  ..+.||||.|...+..           .
T Consensus         6 ~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~---~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s-----------l   70 (200)
T KOG0092|consen    6 FKVVLLGDSGVGKSSLVLRFVKDQ-FHEN---IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS-----------L   70 (200)
T ss_pred             EEEEEECCCCCCchhhhhhhhhCc-cccc---cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc-----------c
Confidence            799999999999999987765333 2221   122333333333221 23  4577999999875432           3


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+|++++++|+|+|+++.-|-.. +.|+..++...++..  .+.++.||+|+..
T Consensus        71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~  124 (200)
T KOG0092|consen   71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLE  124 (200)
T ss_pred             ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhh
Confidence            3467999999999999985544333 567777777644322  4445799999886

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.22  E-value=1.6e-10  Score=86.09  Aligned_cols=117  Identities=18%  Similarity=0.236  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+..|+|.+|+|||+|+-.+.... |.... ...+.+...+.....+ ....+.|+||.|..           .++...+
T Consensus         9 fkllIigDsgVGKssLl~rF~ddt-Fs~sY-itTiGvDfkirTv~i~G~~VkLqIwDtAGqE-----------rFrtits   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDT-FSGSY-ITTIGVDFKIRTVDINGDRVKLQIWDTAGQE-----------RFRTITS   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcc-cccce-EEEeeeeEEEEEeecCCcEEEEEEeecccHH-----------HHHHHHH
Confidence            467899999999999998887553 33221 1222233333444442 23568999999943           3444555


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+++++|++++|+|+++.-|... +.||+.+..-+.. +  |-++|.||.|....
T Consensus        76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v--~~vLVGNK~d~~~R  127 (198)
T KOG0079|consen   76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-V--PKVLVGNKNDDPER  127 (198)
T ss_pred             HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-c--cceecccCCCCccc
Confidence            66899999999999975655444 6788888887653 3  88999999998765

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1e-10  Score=104.32  Aligned_cols=131  Identities=22%  Similarity=0.333  Sum_probs=95.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc-------------CCCCcceeEEEEEEEeeC--CceEEEEeCCCC
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-------------SSSGVTSTCEMQRTVLKD--GQVVNVIDTPGL   79 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~   79 (285)
                      +....++++||.+-..|||||...|+....+....             ...|+|+..+..++.|..  ...+++|||||+
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            33456899999999999999999988554421111             224889998888887732  267999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHH
Q 023214           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED  159 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~  159 (285)
                      .||....       .+.+.    ..+++++|+|++.+.-......+.+..+. +  .  .+|.|+||+|+...+.+.+..
T Consensus       136 vDFs~EV-------sRsla----ac~G~lLvVDA~qGvqAQT~anf~lAfe~-~--L--~iIpVlNKIDlp~adpe~V~~  199 (650)
T KOG0462|consen  136 VDFSGEV-------SRSLA----ACDGALLVVDASQGVQAQTVANFYLAFEA-G--L--AIIPVLNKIDLPSADPERVEN  199 (650)
T ss_pred             cccccee-------hehhh----hcCceEEEEEcCcCchHHHHHHHHHHHHc-C--C--eEEEeeeccCCCCCCHHHHHH
Confidence            9986433       23333    44899999999888888887776666554 3  2  788999999998776454444


Q ss_pred             Hh
Q 023214          160 YL  161 (285)
Q Consensus       160 ~l  161 (285)
                      -+
T Consensus       200 q~  201 (650)
T KOG0462|consen  200 QL  201 (650)
T ss_pred             HH
Confidence            33

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.7e-10  Score=109.63  Aligned_cols=157  Identities=14%  Similarity=0.040  Sum_probs=88.4

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEe----CC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID----TP   77 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liD----tp   77 (285)
                      |+..+++++||.+.+|  .+++|+|+||+|||||+++|+|...+.+|...........+..+.. .....+.++    .+
T Consensus        12 g~~~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~-~~~~~~~~~~v~~~~   88 (638)
T PRK10636         12 GVRVLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQET-PALPQPALEYVIDGD   88 (638)
T ss_pred             CCceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCC-CCCCCCHHHHHHHhh
Confidence            5677999999999999  8999999999999999999999876655432111111111111100 000000000    00


Q ss_pred             CCCC-C---------CCC---------------cHHHHHHHHHHHhhccCCccEEEEEEe-CCCCCCHHHHHHHHHHHHH
Q 023214           78 GLFD-F---------SAG---------------SEFVGKEIVKCIGMAKDGIHAVLVVFS-VRSRFSQEEEAALHSLQTL  131 (285)
Q Consensus        78 G~~~-~---------~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~v~~-~~~~~~~~~~~~l~~~~~~  131 (285)
                      .... .         ...               .......+...+...  +...  ...+ .-..+|++.++++.+++.+
T Consensus        89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~--~~~~~~~~~LSgGerqRv~LA~aL  164 (638)
T PRK10636         89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSN--EQLERPVSDFSGGWRMRLNLAQAL  164 (638)
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCc--hhhcCchhhcCHHHHHHHHHHHHH
Confidence            0000 0         000               000000011111000  1100  0111 1247999999999999998


Q ss_pred             hCccccCeEEEE---EeCCCCCCCChhcHHHHhhhcCCchhH
Q 023214          132 FGKKIFDYMIVV---FTGGDELEDNDETLEDYLGRECPKPLK  170 (285)
Q Consensus       132 ~~~~~~~~~iil---~nk~D~~~~~~~~l~~~l~~~~~~~l~  170 (285)
                      +..+   .++++   +||+|....  ..+.+++..+.++.+.
T Consensus       165 ~~~P---~lLLLDEPtn~LD~~~~--~~L~~~L~~~~~tvii  201 (638)
T PRK10636        165 ICRS---DLLLLDEPTNHLDLDAV--IWLEKWLKSYQGTLIL  201 (638)
T ss_pred             ccCC---CEEEEcCCCCcCCHHHH--HHHHHHHHhCCCeEEE
Confidence            8765   67777   999998877  8899999876555444

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.3e-10  Score=102.75  Aligned_cols=131  Identities=20%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC-CCCCcHHHHHHH
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD-FSAGSEFVGKEI   93 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~   93 (285)
                      ..|  ..|+|+|++++|||||+|+|+........+ ..|.|...--..+.. +|.++.|+||.|+-. .....+.++  +
T Consensus       266 q~g--l~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~g--I  339 (531)
T KOG1191|consen  266 QSG--LQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALG--I  339 (531)
T ss_pred             hcC--CeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHh--H
Confidence            445  899999999999999999999887633322 235555544455555 899999999999986 211222211  2


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hCcc----ccCeEEEEEeCCCCCCC
Q 023214           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL---FGKK----IFDYMIVVFTGGDELED  152 (285)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~---~~~~----~~~~~iil~nk~D~~~~  152 (285)
                      . ........+|++++|+|+....+..+....+.+...   +...    ...+++++.||.|..++
T Consensus       340 ~-rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  340 E-RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             H-HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            2 222335678999999999545555554433333332   1111    11478899999998765

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.21  E-value=2.3e-10  Score=92.79  Aligned_cols=115  Identities=18%  Similarity=0.068  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCCHHHHHH-HHhCCcccccc--cCCCCcceeE--EEEE---------EEe-eCCceEEEEeCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGN-SILGRRAFKSR--ASSSGVTSTC--EMQR---------TVL-KDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln-~l~g~~~~~~~--~~~~~~t~~~--~~~~---------~~~-~~~~~~~liDtpG~~~~~~   84 (285)
                      .+|+++|..|+|||||+. .+.+.. +..+  .....+|+..  .+..         ... .....+.|+||+|....  
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            689999999999999995 554432 1111  0111122210  0110         012 11346889999997531  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                              +   ...+++++|++++|+|++++-+-...  .|+..+..... .  .|+++|.||.|+..
T Consensus        80 --------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~  134 (195)
T cd01873          80 --------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLRY  134 (195)
T ss_pred             --------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhccc
Confidence                    1   12357899999999999867666554  35666655432 3  38999999999753

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.20  E-value=1.9e-10  Score=100.52  Aligned_cols=140  Identities=18%  Similarity=0.198  Sum_probs=86.7

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCC---cceeEEE---EE
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSG---VTSTCEM---QR   62 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~---~t~~~~~---~~   62 (285)
                      .-.++.++.-.-  |....|+++|+..+|||||+|.+++..+.|.-.              +..|   .|+.+.+   ..
T Consensus         3 ~~~iykDIa~RT--~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kA   80 (492)
T TIGR02836         3 KVDIYKDIAERT--QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEA   80 (492)
T ss_pred             chhHHHHHHHHh--CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcc
Confidence            334555543332  333899999999999999999999994432211              2233   4555555   33


Q ss_pred             EEeeCC----ceEEEEeCCCCCCCCCCcHHHHHH----------------------HHHHHhhccCCccEEEEEE-eCC-
Q 023214           63 TVLKDG----QVVNVIDTPGLFDFSAGSEFVGKE----------------------IVKCIGMAKDGIHAVLVVF-SVR-  114 (285)
Q Consensus        63 ~~~~~~----~~~~liDtpG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~v~-~~~-  114 (285)
                      .+....    .++.++||+|+.+.......-...                      -.+.+   ...++..++|. |++ 
T Consensus        81 vEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI---~dhstIgivVtTDgsi  157 (492)
T TIGR02836        81 VEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI---QEHSTIGVVVTTDGTI  157 (492)
T ss_pred             eEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH---HhcCcEEEEEEcCCCc
Confidence            333223    679999999998654321111111                      11122   22567778787 553 


Q ss_pred             -----CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          115 -----SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       115 -----~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                           ..+...+..++..++.. +.    |+++|+|+.|-...
T Consensus       158 ~dI~Re~y~~aEe~~i~eLk~~-~k----PfiivlN~~dp~~~  195 (492)
T TIGR02836       158 TDIPREDYVEAEERVIEELKEL-NK----PFIILLNSTHPYHP  195 (492)
T ss_pred             cccccccchHHHHHHHHHHHhc-CC----CEEEEEECcCCCCc
Confidence                 35667778888888876 33    99999999995433

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.19  E-value=1.8e-11  Score=109.28  Aligned_cols=148  Identities=16%  Similarity=0.106  Sum_probs=97.0

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeC-------C
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDT-------P   77 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDt-------p   77 (285)
                      .++.+++|-+..+  -||++|||||+|||||++.++|...|..|.+..+......++.+....   ..-.|-       |
T Consensus       404 ~iy~~l~fgid~~--srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e---~ldl~~s~le~~~~  478 (614)
T KOG0927|consen  404 MIYKKLNFGIDLD--SRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE---QLDLDKSSLEFMMP  478 (614)
T ss_pred             hhhhhhhcccCcc--cceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh---hcCcchhHHHHHHH
Confidence            4677777888888  799999999999999999999999888776555444333334433311   011111       1


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCCh
Q 023214           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDND  154 (285)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~  154 (285)
                      -+.+  ...   ...++..+..+  +..+-.-+.... .+|.+++.++-++..+...+   +++++   +||+|...-  
T Consensus       479 ~~~~--~~~---~e~~r~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kqP---~lLlLDEPtnhLDi~ti--  545 (614)
T KOG0927|consen  479 KFPD--EKE---LEEMRSILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQP---HLLLLDEPTNHLDIETI--  545 (614)
T ss_pred             hccc--cch---HHHHHHHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcCC---cEEEecCCCcCCCchhH--
Confidence            1111  111   23344444333  223333444444 88899999999998887664   56666   999999888  


Q ss_pred             hcHHHHhhhcCCchhH
Q 023214          155 ETLEDYLGRECPKPLK  170 (285)
Q Consensus       155 ~~l~~~l~~~~~~~l~  170 (285)
                      +.+.+++..+++..+.
T Consensus       546 d~laeaiNe~~Ggvv~  561 (614)
T KOG0927|consen  546 DALAEAINEFPGGVVL  561 (614)
T ss_pred             HHHHHHHhccCCceee
Confidence            8999999988884443

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2.2e-10  Score=102.58  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      +.|.++|+--.|||||+..|-+......  -..+.|.+...+.+.+.  ....++++||||+..|....           
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mR-----------   72 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMR-----------   72 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHH-----------
Confidence            7999999999999999999998876333  34688999999998885  34789999999987653111           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                      ..-..-.|.+++|+++.+.+-+.+...+..++.. +  +  |+++..||+|....+...+..-+.
T Consensus        73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~--v--P~iVAiNKiDk~~~np~~v~~el~  132 (509)
T COG0532          73 ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-G--V--PIVVAINKIDKPEANPDKVKQELQ  132 (509)
T ss_pred             hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-C--C--CEEEEEecccCCCCCHHHHHHHHH
Confidence            1122336899999999999999999998888875 3  3  999999999999765444444333

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.18  E-value=1.6e-10  Score=111.06  Aligned_cols=117  Identities=19%  Similarity=0.308  Sum_probs=77.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeEEEEE----EEeeCCceEEEEeCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQR----TVLKDGQVVNVIDTPGLF   80 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~--------------~~~~~~~~~t~~~~~~~----~~~~~~~~~~liDtpG~~   80 (285)
                      .++|+++|+.|+|||||++.|+.....              .......+.|.......    ..+ .+..++++||||+.
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~~   97 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGHV   97 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCcc
Confidence            479999999999999999998743110              00001123444433222    333 56789999999998


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++.       ...    ..++..+|++++|+|+...+...+...+..+... +  .  |.++++||+|....
T Consensus        98 ~f~-------~~~----~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~--~--p~ivviNKiD~~~~  153 (720)
T TIGR00490        98 DFG-------GDV----TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-N--V--KPVLFINKVDRLIN  153 (720)
T ss_pred             ccH-------HHH----HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-C--C--CEEEEEEChhcccc
Confidence            753       112    2345677999999999767777776666655432 2  1  67899999998743

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.17  E-value=6e-10  Score=101.22  Aligned_cols=116  Identities=20%  Similarity=0.238  Sum_probs=78.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|+.++|||||+-.|+.......                             .....++|....+....+ .+.
T Consensus         7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~~   85 (447)
T PLN00043          7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TKY   85 (447)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CCE
Confidence            37899999999999999988773221000                             001247788877777777 688


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhCccccCeEEE
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~------~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .++++||||+.++       ..    .....+..+|++++|+|+... +.      +..+..+..+.. ++-+   ++++
T Consensus        86 ~i~liDtPGh~df-------~~----~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~---~iIV  150 (447)
T PLN00043         86 YCTVIDAPGHRDF-------IK----NMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVK---QMIC  150 (447)
T ss_pred             EEEEEECCCHHHH-------HH----HHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCC---cEEE
Confidence            9999999997543       12    222335678999999999643 22      344455554443 3433   6788


Q ss_pred             EEeCCCCC
Q 023214          143 VFTGGDEL  150 (285)
Q Consensus       143 l~nk~D~~  150 (285)
                      ++||+|..
T Consensus       151 ~vNKmD~~  158 (447)
T PLN00043        151 CCNKMDAT  158 (447)
T ss_pred             EEEcccCC
Confidence            99999965

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.17  E-value=7.2e-11  Score=93.38  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=65.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEE--eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..|+|+|++|+|||+|+..|.......+-.+.     ... ....  ...+..+.|||+||+...+       ..+...+
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n-~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~   70 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENN-IAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL   70 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEE-EECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCC-ceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence            68999999999999999999866443332221     111 1111  1135679999999987532       2222221


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC----ccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~iil~nk~D~~~~  152 (285)
                      . +.+.+.+++||+|.. .+...-+...+.+-..+.    .....|++|+.||.|....
T Consensus        71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            1 244578999999975 333333444444444332    1223599999999998764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=1e-09  Score=95.40  Aligned_cols=127  Identities=21%  Similarity=0.268  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc---------------CCCCcceeEEEEEEEeeCCce
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA---------------SSSGVTSTCEMQRTVLKDGQV   70 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~~~   70 (285)
                      .+++++|+..+|||||+-.|+-......              +.               ...|+|....+...+. +-..
T Consensus         8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k~~   86 (428)
T COG5256           8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DKYN   86 (428)
T ss_pred             eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CCce
Confidence            7999999999999999987773322100              00               0127888887777777 6678


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214           71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVV  143 (285)
Q Consensus        71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~iil  143 (285)
                      ++|+|+||+-||       ...+   + .....+|+.++|+++...       ..+..+..+-++ ..+|-.   ..|++
T Consensus        87 ~tIiDaPGHrdF-------vknm---I-tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La-~tlGi~---~lIVa  151 (428)
T COG5256          87 FTIIDAPGHRDF-------VKNM---I-TGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA-RTLGIK---QLIVA  151 (428)
T ss_pred             EEEeeCCchHHH-------HHHh---h-cchhhccEEEEEEECCCCccccccccCCchhHHHHHH-HhcCCc---eEEEE
Confidence            999999996543       1111   1 223457999999999655       455555554444 444644   88999


Q ss_pred             EeCCCCCCCChhcHHHHhh
Q 023214          144 FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~  162 (285)
                      +||+|..+-+...+++...
T Consensus       152 vNKMD~v~wde~rf~ei~~  170 (428)
T COG5256         152 VNKMDLVSWDEERFEEIVS  170 (428)
T ss_pred             EEcccccccCHHHHHHHHH
Confidence            9999988654455555444

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.16  E-value=3.7e-10  Score=99.06  Aligned_cols=117  Identities=23%  Similarity=0.370  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-cccc-----------c--CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA-FKSR-----------A--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~-~~~~-----------~--~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      .+|++|.+...|||||+..|+.+.. |...           .  -..|+|+-.....+.| ++..++|+||||+.||.+.
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccch
Confidence            6999999999999999999997653 1111           0  1247888877788888 8999999999999999765


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      .+.+           +.-+|++++++|+.+..-+..+-.+...... |-    +.|+|+||+|.....
T Consensus        85 VERv-----------l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Ar  136 (603)
T COG1217          85 VERV-----------LSMVDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDAR  136 (603)
T ss_pred             hhhh-----------hhhcceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCC
Confidence            5432           4567999999999777777787776666553 32    678999999988654

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7.4e-09  Score=94.89  Aligned_cols=131  Identities=21%  Similarity=0.262  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----------------------------------------CcceeE
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----------------------------------------GVTSTC   58 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-----------------------------------------~~t~~~   58 (285)
                      .+|++.|.+.+||||++|+++-....|++..+.                                         ...-..
T Consensus       110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~  189 (749)
T KOG0448|consen  110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG  189 (749)
T ss_pred             cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence            699999999999999999999888777665432                                         000001


Q ss_pred             EEEEEEeeCC------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 023214           59 EMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF  132 (285)
Q Consensus        59 ~~~~~~~~~~------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~  132 (285)
                      ....+.|+.+      ..+.++|.||+.-.        .+...++..+...+|+++||+.+.+.++..++.++..+... 
T Consensus       190 sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-  260 (749)
T KOG0448|consen  190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-  260 (749)
T ss_pred             eEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence            1112333222      35889999998732        22233444556688999999999888999998888877664 


Q ss_pred             CccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214          133 GKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       133 ~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~  163 (285)
                       +   ++++|+.||||......+-.++.+++
T Consensus       261 -K---pniFIlnnkwDasase~ec~e~V~~Q  287 (749)
T KOG0448|consen  261 -K---PNIFILNNKWDASASEPECKEDVLKQ  287 (749)
T ss_pred             -C---CcEEEEechhhhhcccHHHHHHHHHH
Confidence             2   38999999999876644444444443

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.15  E-value=6.2e-10  Score=91.58  Aligned_cols=78  Identities=23%  Similarity=0.225  Sum_probs=46.8

Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHH-HhCccccCeEEEEEeCC
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQT-LFGKKIFDYMIVVFTGG  147 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~iil~nk~  147 (285)
                      .+.||||||..+...+.. .+.-|...+...  .+-+++||+|....-++... ..+-..+. ++.-..  |+|+++||.
T Consensus       117 ~~~liDTPGQIE~FtWSA-sGsIIte~lass--~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktkl--p~ivvfNK~  191 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSA-SGSIITETLASS--FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKL--PFIVVFNKT  191 (366)
T ss_pred             CEEEEcCCCceEEEEecC-CccchHhhHhhc--CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccC--CeEEEEecc
Confidence            488999999976543322 234444445444  34788999997423333331 22223333 233333  999999999


Q ss_pred             CCCCC
Q 023214          148 DELED  152 (285)
Q Consensus       148 D~~~~  152 (285)
                      |....
T Consensus       192 Dv~d~  196 (366)
T KOG1532|consen  192 DVSDS  196 (366)
T ss_pred             ccccc
Confidence            98766

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.14  E-value=5.8e-10  Score=104.64  Aligned_cols=113  Identities=21%  Similarity=0.241  Sum_probs=73.5

Q ss_pred             cCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCcc
Q 023214           26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH  105 (285)
Q Consensus        26 G~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (285)
                      |.+|+|||||+|.++|.... .+ ...++|+........+ ++..+.++||||..+......+  +.+.+.+. ....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~-v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~l-~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT-VG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLE--EEVARDYL-LNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe-ec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchH--HHHHHHHH-hhcCCC
Confidence            88999999999999998642 22 3456777766666666 6778999999999875432211  12222211 134689


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       106 ~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++++|+|++ .+.. .   +....+.....  .|+++++||+|...
T Consensus        75 vvI~VvDat-~ler-~---l~l~~ql~~~~--~PiIIVlNK~Dl~~  113 (591)
T TIGR00437        75 LVVNVVDAS-NLER-N---LYLTLQLLELG--IPMILALNLVDEAE  113 (591)
T ss_pred             EEEEEecCC-cchh-h---HHHHHHHHhcC--CCEEEEEehhHHHH
Confidence            999999986 3322 1   22222222222  39999999999764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2.8e-10  Score=99.21  Aligned_cols=121  Identities=17%  Similarity=0.250  Sum_probs=90.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh--CCcccccccCC------------------CCcceeEEEEEEEeeCCceEEE
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSIL--GRRAFKSRASS------------------SGVTSTCEMQRTVLKDGQVVNV   73 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~--g~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~l   73 (285)
                      +.+.  ++.+||.++.+|||||-..|+  |......|...                  .|+++..+.....| .+..++|
T Consensus         9 v~rR--RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNL   85 (528)
T COG4108           9 VARR--RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNL   85 (528)
T ss_pred             Hhhh--cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEec
Confidence            4455  799999999999999987655  32222222111                  27777777777888 7899999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      +||||+.|++.+...           .+..+|.++.|+|+..++.+..++.++.++.. +  .  |++-++||+|....+
T Consensus        86 LDTPGHeDFSEDTYR-----------tLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~--i--PI~TFiNKlDR~~rd  149 (528)
T COG4108          86 LDTPGHEDFSEDTYR-----------TLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR-D--I--PIFTFINKLDREGRD  149 (528)
T ss_pred             cCCCCccccchhHHH-----------HHHhhheeeEEEecccCccHHHHHHHHHHhhc-C--C--ceEEEeeccccccCC
Confidence            999999998543321           13456899999999778999998888877664 3  2  899999999998775

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.12  E-value=9.9e-10  Score=93.27  Aligned_cols=125  Identities=19%  Similarity=0.171  Sum_probs=82.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      -|++||-+++|||||++.+....+-...  ...+|..+....+....+..+++-|.||+........-++.++++.+..|
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIad--YpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIAD--YPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccC--CccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            4789999999999999999987753222  23345555555555545677999999999876555555677777777666


Q ss_pred             cCCccEEEEEEeCCCCCC---HH-HHHHHHHHHHHhCcc-ccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFS---QE-EEAALHSLQTLFGKK-IFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~---~~-~~~~l~~~~~~~~~~-~~~~~iil~nk~D~~~~  152 (285)
                          .++++|+|++ +..   +. +...+..-...+... ..+|.+|++||+|...+
T Consensus       239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~  290 (369)
T COG0536         239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD  290 (369)
T ss_pred             ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence                6889999985 333   22 222222222222221 12489999999995544

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.11  E-value=1.7e-09  Score=102.95  Aligned_cols=156  Identities=19%  Similarity=0.088  Sum_probs=88.1

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCC--CC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP--GL   79 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtp--G~   79 (285)
                      |+.++++++||.+.+|  .+++|+|+||+|||||+++|+|...+.+|...........+..+........++++.+  ++
T Consensus        14 ~~~~il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~   91 (635)
T PRK11147         14 SDAPLLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI   91 (635)
T ss_pred             CCceeEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhh
Confidence            4567899999999999  8999999999999999999999877655432111111111111100000000111100  00


Q ss_pred             CC---------------CCCCcHH-------------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHH
Q 023214           80 FD---------------FSAGSEF-------------------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL  125 (285)
Q Consensus        80 ~~---------------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l  125 (285)
                      ..               .......                   ....+...+.. + +..   . -..-..+|+++++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l-gl~---~-~~~~~~LSgGekqRv  165 (635)
T PRK11147         92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ-L-GLD---P-DAALSSLSGGWLRKA  165 (635)
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh-C-CCC---C-CCchhhcCHHHHHHH
Confidence            00               0000000                   00001111100 0 010   0 011247999999999


Q ss_pred             HHHHHHhCccccCeEEEE---EeCCCCCCCChhcHHHHhhhcCCchhH
Q 023214          126 HSLQTLFGKKIFDYMIVV---FTGGDELEDNDETLEDYLGRECPKPLK  170 (285)
Q Consensus       126 ~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l~~~l~~~~~~~l~  170 (285)
                      .+++.++..+   +++|+   +|++|....  ..+.+++....++.+.
T Consensus       166 ~LAraL~~~P---~lLLLDEPt~~LD~~~~--~~L~~~L~~~~~tvli  208 (635)
T PRK11147        166 ALGRALVSNP---DVLLLDEPTNHLDIETI--EWLEGFLKTFQGSIIF  208 (635)
T ss_pred             HHHHHHhcCC---CEEEEcCCCCccCHHHH--HHHHHHHHhCCCEEEE
Confidence            9999988765   67777   999998877  8899999876655444

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.11  E-value=3.9e-10  Score=108.67  Aligned_cols=119  Identities=19%  Similarity=0.299  Sum_probs=79.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEe--e-CCceEEEEeCCCC
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVL--K-DGQVVNVIDTPGL   79 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~--~-~~~~~~liDtpG~   79 (285)
                      ...++|+++|+.++|||||+..|+.........              ...+.|......+..|  . .+..++|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            345799999999999999999998533211100              0113444444333333  1 2566899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++.       ..+    ..++..+|++++|+|+...+...+...+..+... +.    |.++++||+|...
T Consensus        98 ~df~-------~~~----~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFG-------GDV----TRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI  153 (731)
T ss_pred             cChH-------HHH----HHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence            8742       222    2334567999999999778888888777765443 32    6789999999764

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.11  E-value=1.4e-10  Score=85.67  Aligned_cols=131  Identities=15%  Similarity=0.119  Sum_probs=86.8

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   91 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~   91 (285)
                      +.++++...||+++|-.++|||||++.|.++.+-.     ..+|.........+.....++++|..|.-.          
T Consensus        10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~----------   74 (185)
T KOG0074|consen   10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEYDGTFHLNVWDIGGQRG----------   74 (185)
T ss_pred             hcCCCcceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEeecCcEEEEEEecCCccc----------
Confidence            45666777999999999999999999999887522     222333344455553457899999888543          


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214           92 EIVKCIGMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                       ++-+++++|..+|+++||+|..+.  +........+++...--..  .|++|..||.|++..  ...++.-.
T Consensus        75 -IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~--vpvlIfankQdllta--a~~eeia~  142 (185)
T KOG0074|consen   75 -IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTA--AKVEEIAL  142 (185)
T ss_pred             -cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhh--cchHHHHH
Confidence             344667789999999999997533  2211122222222211112  388999999999876  55555443

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.10  E-value=5.2e-11  Score=98.56  Aligned_cols=44  Identities=27%  Similarity=0.331  Sum_probs=39.7

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   50 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~   50 (285)
                      ++..|+|+.+++|  ..++|+||||+|||||+++|+|-..|..|..
T Consensus        18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i   61 (254)
T COG1121          18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSGEI   61 (254)
T ss_pred             eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence            6899999999999  8999999999999999999999877766543

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.09  E-value=2e-10  Score=90.73  Aligned_cols=43  Identities=19%  Similarity=0.314  Sum_probs=38.7

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (166)
T cd03223          14 RVLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSG   56 (166)
T ss_pred             CeeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            46899999999999  89999999999999999999998766554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd01900 YchF YchF subfamily

Probab=99.09  E-value=7.8e-10  Score=93.67  Aligned_cols=86  Identities=19%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCCCC
Q 023214           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~~~   85 (285)
                      |+|||.+++|||||+|+|++.....+  ...++|.........+...                ..+.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~--n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAA--NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccc--cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            58999999999999999999876322  2244555555555555222                14899999999854332


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSV  113 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~  113 (285)
                      ...++..+.    .....+|++++|+++
T Consensus        79 ~~glg~~fL----~~i~~~D~li~VV~~  102 (274)
T cd01900          79 GEGLGNKFL----SHIREVDAIAHVVRC  102 (274)
T ss_pred             hhHHHHHHH----HHHHhCCEEEEEEeC
Confidence            333333333    345677999999987

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.08  E-value=6.5e-10  Score=93.67  Aligned_cols=95  Identities=19%  Similarity=0.274  Sum_probs=63.6

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   91 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~   91 (285)
                      |.+.....-+++|||.+++|||||+|.|+|...-...  ...+|..+...-.++ .|..+.++|+||+..........++
T Consensus        56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~--y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~  132 (365)
T COG1163          56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVAD--YPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGR  132 (365)
T ss_pred             ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccc--cCceecccccceEee-cCceEEEEcCcccccCcccCCCCcc
Confidence            3333333379999999999999999999988753222  233455555566777 8999999999999754333322223


Q ss_pred             HHHHHHhhccCCccEEEEEEeC
Q 023214           92 EIVKCIGMAKDGIHAVLVVFSV  113 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~~~  113 (285)
                      ++.    ...+.+|.+++|+|+
T Consensus       133 ~vl----sv~R~ADlIiiVld~  150 (365)
T COG1163         133 QVL----SVARNADLIIIVLDV  150 (365)
T ss_pred             eee----eeeccCCEEEEEEec
Confidence            333    234566888888874

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.9e-09  Score=80.76  Aligned_cols=116  Identities=20%  Similarity=0.190  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE--EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+++++|+.|+|||.|+..+..... ....   ++|+.+.+.  .+... ...++.||||.|..           .++..
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kf-kDds---sHTiGveFgSrIinVGgK~vKLQIWDTAGQE-----------rFRSV   74 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKF-KDDS---SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE-----------RFRSV   74 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhh-cccc---cceeeeeecceeeeecCcEEEEEEeecccHH-----------HHHHH
Confidence            6899999999999999999886553 2222   223333332  33331 13458899999954           45556


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+|+++-+.++|+|++++-+.... .|+.-++.+..+.+  -++++.||.|+...
T Consensus        75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~  129 (214)
T KOG0086|consen   75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE  129 (214)
T ss_pred             HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh
Confidence            66779999999999999867665554 44555555433321  34444899997644

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.07  E-value=5.9e-09  Score=86.32  Aligned_cols=106  Identities=20%  Similarity=0.120  Sum_probs=66.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC-cccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...|+++|+.++|||||+|.|+|. ..|..+.....+|.....+.....  .+..+.++||||+.+...........+..
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~   86 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA   86 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence            468999999999999999999998 356665555566665555544442  25779999999999875543111111111


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ  129 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~  129 (285)
                      .. . . -.+.++|.++.  .....+...+..+.
T Consensus        87 l~-~-l-lss~~i~n~~~--~~~~~~~~~l~~~~  115 (224)
T cd01851          87 LA-T-L-LSSVLIYNSWE--TILGDDLAALMGLL  115 (224)
T ss_pred             HH-H-H-HhCEEEEeccC--cccHHHHHHHHHHH
Confidence            11 1 1 24677777664  34445554444443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PTZ00258 GTP-binding protein; Provisional

Probab=99.07  E-value=1.3e-09  Score=96.41  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=61.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS   83 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~   83 (285)
                      .+|+|||.+++|||||+|+|++.....+.  .+++|..+......+.+                +..+.++||||+....
T Consensus        22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n--~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         22 LKMGIVGLPNVGKSTTFNALCKQQVPAEN--FPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             cEEEEECCCCCChHHHHHHHhcCcccccC--CCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            79999999999999999999987753222  24556666666555522                2248999999998543


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSV  113 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~  113 (285)
                      .....++..+.    .....+|++++|+++
T Consensus       100 ~~g~gLg~~fL----~~Ir~aD~il~VVd~  125 (390)
T PTZ00258        100 SEGEGLGNAFL----SHIRAVDGIYHVVRA  125 (390)
T ss_pred             cchhHHHHHHH----HHHHHCCEEEEEEeC
Confidence            32233333333    345667999999997

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.07  E-value=1.9e-09  Score=97.92  Aligned_cols=121  Identities=13%  Similarity=0.194  Sum_probs=76.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeEEEEEEE---------------eeC-------------
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTV---------------LKD-------------   67 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~-~~~~~~t~~~~~~~~~---------------~~~-------------   67 (285)
                      .+..+|+++|+-..|||||+.+|+|....... ....|.|....+....               +..             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            34489999999999999999999987542111 1122344333332110               000             


Q ss_pred             ----CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCccccCeEEE
Q 023214           68 ----GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        68 ----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                          ...++++||||+.+       ....+    ......+|++++|+++..+ ..+..+..+..+. .++-+   ++++
T Consensus       112 ~~~~~~~i~~IDtPGH~~-------fi~~m----~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi~---~iIV  176 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDI-------LMATM----LNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKLK---HIII  176 (460)
T ss_pred             cccccceEeeeeCCCHHH-------HHHHH----HHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCCC---cEEE
Confidence                24689999999632       22222    2334577999999999754 4555555555443 34543   7899


Q ss_pred             EEeCCCCCCC
Q 023214          143 VFTGGDELED  152 (285)
Q Consensus       143 l~nk~D~~~~  152 (285)
                      ++||+|....
T Consensus       177 vlNKiDlv~~  186 (460)
T PTZ00327        177 LQNKIDLVKE  186 (460)
T ss_pred             EEecccccCH
Confidence            9999998754

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.07  E-value=4.7e-10  Score=99.25  Aligned_cols=126  Identities=23%  Similarity=0.243  Sum_probs=82.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+++|+|-+++|||||+|.++-..+-..  ....+|...-.++..+ .-..+.++||||+.|....+..+ -++.....
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevq--pYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~-IEmqsITA  243 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQ--PYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNI-IEMQIITA  243 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccC--Ccccccchhhhhhhhh-heeeeeecCCccccCcchhhhhH-HHHHHHHH
Confidence            37999999999999999999886554211  1122333333344444 45668999999999864333222 22222221


Q ss_pred             hccCCccEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVR--SRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+ .-..++||++|.+  ++.|..+ ......++-+|...   ++|+|+||+|....
T Consensus       244 LA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~  296 (620)
T KOG1490|consen  244 LA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP  296 (620)
T ss_pred             HH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc
Confidence            11 1124789999985  4566555 46777888888766   89999999998866

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.06  E-value=6.9e-10  Score=91.86  Aligned_cols=141  Identities=19%  Similarity=0.160  Sum_probs=79.6

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|.... +....      .. ...-..+.+.|.+...
T Consensus        17 ~~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~------~~-~~~i~~v~q~~~~~~~   87 (220)
T cd03293          17 VTALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT------GP-GPDRGYVFQQDALLPW   87 (220)
T ss_pred             eEEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc------cc-cCcEEEEecccccccC
Confidence            46899999999999  899999999999999999999987655543211 10000      00 1111233444444321


Q ss_pred             CCCcHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214           83 SAGSEFV--------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT  145 (285)
Q Consensus        83 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n  145 (285)
                      ....+.+              ...+...+.. + +...  +.-.....+|+++++++.+++.+...+   +++++   ++
T Consensus        88 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LSgG~~qrl~la~al~~~p---~lllLDEPt~  160 (220)
T cd03293          88 LTVLDNVALGLELQGVPKAEARERAEELLEL-V-GLSG--FENAYPHQLSGGMRQRVALARALAVDP---DVLLLDEPFS  160 (220)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CChh--hhhCCcccCCHHHHHHHHHHHHHHcCC---CEEEECCCCC
Confidence            1111110              0111111111 1 1111  111112479999999999999987765   67777   77


Q ss_pred             CCCCCCCChhcHHHHhh
Q 023214          146 GGDELEDNDETLEDYLG  162 (285)
Q Consensus       146 k~D~~~~~~~~l~~~l~  162 (285)
                      .+|....  ..+.+++.
T Consensus       161 ~LD~~~~--~~~~~~l~  175 (220)
T cd03293         161 ALDALTR--EQLQEELL  175 (220)
T ss_pred             CCCHHHH--HHHHHHHH
Confidence            7775544  44444443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.06  E-value=5.1e-10  Score=91.66  Aligned_cols=46  Identities=28%  Similarity=0.367  Sum_probs=41.3

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ++..+++++|+.+..|  ..|+|+||+|+|||||+|.|+|-..+..|.
T Consensus        14 ~~~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~G~   59 (248)
T COG1116          14 GGVEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTSGE   59 (248)
T ss_pred             CceEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            3457889999999999  899999999999999999999999877763

>PRK12740 elongation factor G; Reviewed

Probab=99.06  E-value=1.8e-09  Score=103.54  Aligned_cols=111  Identities=24%  Similarity=0.329  Sum_probs=78.1

Q ss_pred             EcCCCCCHHHHHHHHhCCcccccc---c-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 023214           25 VGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (285)
Q Consensus        25 vG~~g~GKSTlln~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~   88 (285)
                      +|+.++|||||++.|+........   .             ...++|+........+ .+..+++|||||..++      
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence            699999999999999644321110   0             1246677777777777 7889999999998642      


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       .....    .++..+|++++|+|+...........+..+... +    .|+++++||+|....
T Consensus        74 -~~~~~----~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~~  127 (668)
T PRK12740         74 -TGEVE----RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAGA  127 (668)
T ss_pred             -HHHHH----HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence             12222    234467999999999777777776666665542 2    289999999998754

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.06  E-value=1.6e-09  Score=94.84  Aligned_cols=89  Identities=18%  Similarity=0.136  Sum_probs=60.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS   83 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~   83 (285)
                      .+|+|||.+++|||||+|+|++.....+  ..+++|..+......+...                ..+.++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~--nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAA--NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeec--ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            6899999999999999999999874222  2234555555544444221                258999999998543


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~  114 (285)
                      .....++..    +......+|++++|+++.
T Consensus        81 ~~g~glg~~----fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQ----FLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHH----HHHHHHhCCEEEEEEeCC
Confidence            222233333    333456779999999973

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=4e-10  Score=98.56  Aligned_cols=151  Identities=14%  Similarity=0.145  Sum_probs=99.8

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-   80 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-   80 (285)
                      |-.++|.+++|-+.-.  -||+||||||+|||||+..|+|...|..|......+..+..+.+..  +..++.-.||--+ 
T Consensus       598 gqkpLFkkldFGiDmd--SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~--~E~L~~Eetp~EyL  673 (807)
T KOG0066|consen  598 GQKPLFKKLDFGIDMD--SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHA--NEALNGEETPVEYL  673 (807)
T ss_pred             CCCchhhccccccccc--ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhh--HHhhccccCHHHHH
Confidence            3468899999888887  7999999999999999999999998877665555555555554433  2334444444211 


Q ss_pred             --CCCCCcHHHHHHHHHHHhhccC--CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCC
Q 023214           81 --DFSAGSEFVGKEIVKCIGMAKD--GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDN  153 (285)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~  153 (285)
                        .|....    +.-+.++-...-  .+|.+-+.     .+|++.+.++.+....++.+   .++|+   +|.+|+.+- 
T Consensus       674 qr~FNlpy----q~ARK~LG~fGL~sHAHTikik-----dLSGGQKaRValaeLal~~P---DvlILDEPTNNLDIESI-  740 (807)
T KOG0066|consen  674 QRKFNLPY----QEARKQLGTFGLASHAHTIKIK-----DLSGGQKARVALAELALGGP---DVLILDEPTNNLDIESI-  740 (807)
T ss_pred             HHhcCCCh----HHHHHHhhhhhhhhccceEeee-----ecCCcchHHHHHHHHhcCCC---CEEEecCCCCCcchhhH-
Confidence              000011    122223222111  23443332     67778888888888888765   67777   899998776 


Q ss_pred             hhcHHHHhhhcCCchhH
Q 023214          154 DETLEDYLGRECPKPLK  170 (285)
Q Consensus       154 ~~~l~~~l~~~~~~~l~  170 (285)
                       ..+.+++..+.+.++.
T Consensus       741 -DALaEAIney~GgVi~  756 (807)
T KOG0066|consen  741 -DALAEAINEYNGGVIM  756 (807)
T ss_pred             -HHHHHHHHhccCcEEE
Confidence             7788888878777666

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.05  E-value=7.1e-10  Score=91.30  Aligned_cols=44  Identities=27%  Similarity=0.274  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G   55 (213)
T cd03259          12 SVRALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERPDSG   55 (213)
T ss_pred             CeeeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            356899999999999  89999999999999999999998766554

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.05  E-value=8.5e-10  Score=85.37  Aligned_cols=121  Identities=14%  Similarity=0.102  Sum_probs=76.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .++|.++|.+|+|||||+|..........  ....+........+... .-..+.||||.|...|.           +.-
T Consensus         9 lLKViiLGDsGVGKtSLmn~yv~~kF~~q--ykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFq-----------sLg   75 (210)
T KOG0394|consen    9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQ--YKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQ-----------SLG   75 (210)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHHHH--hccccchhheeeEEEEcCeEEEEEEEecccHHHhh-----------hcc
Confidence            48999999999999999999987664211  11111111111222221 12347899999976442           122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHH--HHHHHh-CccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALH--SLQTLF-GKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~--~~~~~~-~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...|+++|.+++|+|+..+-+.+....|+  ++...- ..+...|+||+.||.|....
T Consensus        76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~  133 (210)
T KOG0394|consen   76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG  133 (210)
T ss_pred             cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence            35589999999999997665555443333  333332 22345799999999997653

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.04  E-value=6.8e-10  Score=85.60  Aligned_cols=43  Identities=33%  Similarity=0.369  Sum_probs=38.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~   47 (285)
                      +.+++.++++.+.+|  ..++|+|+||+|||||+++|+|...+..
T Consensus        12 ~~~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~   54 (144)
T cd03221          12 GKLLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDE   54 (144)
T ss_pred             CceEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCc
Confidence            346889999999999  8999999999999999999999876544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.04  E-value=1.4e-10  Score=99.91  Aligned_cols=145  Identities=15%  Similarity=0.127  Sum_probs=87.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +..+.+++|+.+.+|  ..++|+|+||||||||+++|+|...+.+|.... +......  ...+ ...--++.+.|.+..
T Consensus        17 ~~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~-~~~igy~~~~~~~~~   91 (293)
T COG1131          17 DKTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKV-RRRIGYVPQEPSLYP   91 (293)
T ss_pred             CCEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHH-HhheEEEccCCCCCc
Confidence            367899999999999  899999999999999999999998775543210 0000000  0000 122356777787654


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCc--------cEEEEEE------e-CCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGI--------HAVLVVF------S-VRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~v~------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      . .+..    +...++...+...        +-++-.+      + .-..+|.+.++++..+..+++.+   .++|+   
T Consensus        92 ~-lT~~----e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P---~lliLDEP  163 (293)
T COG1131          92 E-LTVR----ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP---ELLILDEP  163 (293)
T ss_pred             c-ccHH----HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC---CEEEECCC
Confidence            2 2322    2222322222211        0011001      1 11369999999999999988876   67777   


Q ss_pred             EeCCCCCCCChhcHHHHhh
Q 023214          144 FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~  162 (285)
                      +|-+|-...  ..+.+.+.
T Consensus       164 t~GLDp~~~--~~~~~~l~  180 (293)
T COG1131         164 TSGLDPESR--REIWELLR  180 (293)
T ss_pred             CcCCCHHHH--HHHHHHHH
Confidence            788886554  44545444

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.04  E-value=9.9e-10  Score=92.95  Aligned_cols=143  Identities=13%  Similarity=0.193  Sum_probs=81.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|....+... .    ..+ ...-.++.+.|.+...
T Consensus        24 ~~~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~-~----~~~-~~~i~~v~q~~~l~~~   95 (257)
T PRK11247         24 ERTVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP-L----AEA-REDTRLMFQDARLLPW   95 (257)
T ss_pred             CcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE-H----HHh-hCceEEEecCccCCCC
Confidence            456899999999999  8999999999999999999999886655432110000 0    000 0111233334433321


Q ss_pred             CCCcHH--------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCC
Q 023214           83 SAGSEF--------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELE  151 (285)
Q Consensus        83 ~~~~~~--------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~  151 (285)
                      ....+.        ....+...+...  +...  +.-.....+|+++++++..++.+...+   +++++   ++.+|...
T Consensus        96 ~tv~enl~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGqkqrl~laraL~~~p---~lllLDEPt~~LD~~~  168 (257)
T PRK11247         96 KKVIDNVGLGLKGQWRDAALQALAAV--GLAD--RANEWPAALSGGQKQRVALARALIHRP---GLLLLDEPLGALDALT  168 (257)
T ss_pred             CcHHHHHHhcccchHHHHHHHHHHHc--CChh--HhcCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHH
Confidence            000000        011122222111  1111  111112479999999999999887765   67777   88888665


Q ss_pred             CChhcHHHHhh
Q 023214          152 DNDETLEDYLG  162 (285)
Q Consensus       152 ~~~~~l~~~l~  162 (285)
                      .  ..+.+.+.
T Consensus       169 ~--~~l~~~L~  177 (257)
T PRK11247        169 R--IEMQDLIE  177 (257)
T ss_pred             H--HHHHHHHH
Confidence            4  45555553

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2.5e-09  Score=79.72  Aligned_cols=119  Identities=12%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .++.++|.+.+|||||+..-++....+.-.+..|+..+.... ........+.++||.|...           ++.....
T Consensus        22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTv-yr~~kRiklQiwDTagqEr-----------yrtiTTa   89 (193)
T KOG0093|consen   22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-YRSDKRIKLQIWDTAGQER-----------YRTITTA   89 (193)
T ss_pred             eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEe-eecccEEEEEEEecccchh-----------hhHHHHH
Confidence            589999999999999999999877543333333443332211 1111245689999999752           2333445


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++++++++++++|..+.-+-.. ..+...++...-..  .++|++.||+|+.+.
T Consensus        90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~e  141 (193)
T KOG0093|consen   90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSE  141 (193)
T ss_pred             HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccc
Confidence            6899999999999864433333 23333444332223  389999999997764

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.03  E-value=2.1e-09  Score=85.56  Aligned_cols=43  Identities=30%  Similarity=0.278  Sum_probs=38.4

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++++++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        13 ~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G   55 (173)
T cd03230          13 KTALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPDSG   55 (173)
T ss_pred             eeeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            46889999999999  89999999999999999999998765544

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=99.03  E-value=2.1e-08  Score=89.75  Aligned_cols=149  Identities=19%  Similarity=0.200  Sum_probs=106.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--------------------------------------------
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--------------------------------------------   52 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~--------------------------------------------   52 (285)
                      .+.+||++||.-.+||||.+.+|+....||.|+...                                            
T Consensus       306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~  385 (980)
T KOG0447|consen  306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL  385 (980)
T ss_pred             ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence            344899999999999999999999888888765432                                            


Q ss_pred             --------CcceeEEEEEEEeeCC---ceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCH
Q 023214           53 --------GVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ  119 (285)
Q Consensus        53 --------~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~  119 (285)
                              |.|++....+... .|   ..++++|.||...+..  ...+....|......++..|+++++++.-+ +++.
T Consensus       386 RMr~sVr~GkTVSnEvIsltV-KGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDA  463 (980)
T KOG0447|consen  386 RMRKNVKEGCTVSPETISLNV-KGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDA  463 (980)
T ss_pred             HHHhcccCCcccccceEEEee-cCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccch
Confidence                    7777777776666 33   5699999999986532  234455666666667788999999999876 6666


Q ss_pred             HHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC---hhcHHHHhhhcCCchhH
Q 023214          120 EEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (285)
Q Consensus       120 ~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~---~~~l~~~l~~~~~~~l~  170 (285)
                      +....-.++..+ . +....+|+|+||.|+...+   ...+..++. ..-.+..
T Consensus       464 ERSnVTDLVsq~-D-P~GrRTIfVLTKVDlAEknlA~PdRI~kIle-GKLFPMK  514 (980)
T KOG0447|consen  464 ERSIVTDLVSQM-D-PHGRRTIFVLTKVDLAEKNVASPSRIQQIIE-GKLFPMK  514 (980)
T ss_pred             hhhhHHHHHHhc-C-CCCCeeEEEEeecchhhhccCCHHHHHHHHh-cCccchh
Confidence            555555555543 2 3445899999999987543   355666665 3444443

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.03  E-value=1.3e-09  Score=91.06  Aligned_cols=44  Identities=23%  Similarity=0.318  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G   55 (235)
T cd03261          12 GRTVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSG   55 (235)
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            356899999999999  89999999999999999999998876554

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.03  E-value=1.5e-09  Score=87.76  Aligned_cols=118  Identities=24%  Similarity=0.173  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|.+|+|||+|...+++... .....+...+.......+. .....+.|+||+|...+...           ...
T Consensus         4 ~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~-~~~~~l~ilDt~g~~~~~~~-----------~~~   70 (196)
T KOG0395|consen    4 YKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVD-GEVCMLEILDTAGQEEFSAM-----------RDL   70 (196)
T ss_pred             eEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEEC-CEEEEEEEEcCCCcccChHH-----------HHH
Confidence            7999999999999999988886663 3332222222221112221 12345779999995543221           123


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +....|+|++|++++++-|..+...+ ..+... ......|+++|.||.|...
T Consensus        71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~-~~~~~~PivlVGNK~Dl~~  122 (196)
T KOG0395|consen   71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRV-KGRDDVPIILVGNKCDLER  122 (196)
T ss_pred             hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHh-hCcCCCCEEEEEEcccchh
Confidence            46677999999999878777765443 344232 2223359999999999875

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.02  E-value=1.5e-09  Score=86.77  Aligned_cols=44  Identities=27%  Similarity=0.332  Sum_probs=38.9

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (178)
T cd03229          12 QKTVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEPDSG   55 (178)
T ss_pred             CeEEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            346889999999999  89999999999999999999998765544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.02  E-value=1.2e-09  Score=94.82  Aligned_cols=147  Identities=12%  Similarity=0.060  Sum_probs=83.1

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (285)
                      ++.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.... +.....  ..... ...-.++.+.|.+.
T Consensus         4 ~~~~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~-~~~i~~~~q~~~~~   78 (302)
T TIGR01188         4 GDFKAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR--EPRKV-RRSIGIVPQYASVD   78 (302)
T ss_pred             CCeeEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--CHHHH-HhhcEEecCCCCCC
Confidence            3467899999999999  899999999999999999999988766543211 100000  00000 00112344555544


Q ss_pred             CCCCCcHHHH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214           81 DFSAGSEFVG---------------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--  143 (285)
Q Consensus        81 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--  143 (285)
                      .. .+..+..               ..+...+.. + +...  +.-.....+|.++++++.+++.++..+   +++++  
T Consensus        79 ~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDE  150 (302)
T TIGR01188        79 ED-LTGRENLEMMGRLYGLPKDEAEERAEELLEL-F-ELGE--AADRPVGTYSGGMRRRLDIAASLIHQP---DVLFLDE  150 (302)
T ss_pred             CC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CChh--HhCCchhhCCHHHHHHHHHHHHHhcCC---CEEEEeC
Confidence            22 1111100               011111111 1 1100  001111469999999999999888765   67777  


Q ss_pred             -EeCCCCCCCChhcHHHHhhh
Q 023214          144 -FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 -~nk~D~~~~~~~~l~~~l~~  163 (285)
                       ++.+|-...  ..+.+++..
T Consensus       151 Pt~gLD~~~~--~~l~~~l~~  169 (302)
T TIGR01188       151 PTTGLDPRTR--RAIWDYIRA  169 (302)
T ss_pred             CCcCCCHHHH--HHHHHHHHH
Confidence             788886555  555555543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.02  E-value=9.8e-10  Score=90.27  Aligned_cols=44  Identities=27%  Similarity=0.262  Sum_probs=39.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (210)
T cd03269          12 RVTALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILPDSG   55 (210)
T ss_pred             CEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            356889999999999  89999999999999999999998765554

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=4.2e-08  Score=84.12  Aligned_cols=128  Identities=18%  Similarity=0.272  Sum_probs=78.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEE------------Eee---------------------
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT------------VLK---------------------   66 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~------------~~~---------------------   66 (285)
                      +-|+++|..+.|||||+|.|++...+.....+.++|-.....-.            ...                     
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            79999999999999999999999876443333332222111100            000                     


Q ss_pred             ---C---CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCe
Q 023214           67 ---D---GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDY  139 (285)
Q Consensus        67 ---~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~  139 (285)
                         .   =..++||||||+.+...-.-...-.+...+......+|.|++++|+. -.++.+-...+..++   |...  .
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~Ed--k  213 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHED--K  213 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcc--e
Confidence               0   01388999999986432211111222233333356779999999983 234555555555554   3333  7


Q ss_pred             EEEEEeCCCCCCC
Q 023214          140 MIVVFTGGDELED  152 (285)
Q Consensus       140 ~iil~nk~D~~~~  152 (285)
                      +-||+||+|....
T Consensus       214 iRVVLNKADqVdt  226 (532)
T KOG1954|consen  214 IRVVLNKADQVDT  226 (532)
T ss_pred             eEEEeccccccCH
Confidence            8899999998876

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.02  E-value=4.5e-10  Score=92.36  Aligned_cols=43  Identities=30%  Similarity=0.281  Sum_probs=38.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+++++++++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (211)
T cd03225          14 RPALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGPTSG   56 (211)
T ss_pred             eeeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            56899999999999  89999999999999999999998766554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.02  E-value=1.6e-09  Score=89.31  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=39.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   57 (214)
T TIGR02673        14 GVAALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTPSRG   57 (214)
T ss_pred             CceeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            356899999999999  89999999999999999999998765554

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.01  E-value=1.2e-09  Score=92.33  Aligned_cols=142  Identities=17%  Similarity=0.181  Sum_probs=80.7

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.... +....      .. .....++.+.|.+..
T Consensus        13 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~------~~-~~~~~~v~q~~~~~~   83 (255)
T PRK11248         13 GKPALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE------GP-GAERGVVFQNEGLLP   83 (255)
T ss_pred             CeeeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC------CC-CCcEEEEeCCCccCC
Confidence            356889999999999  899999999999999999999988765543211 00000      00 001122333343332


Q ss_pred             CCCCc--------------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           82 FSAGS--------------EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        82 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      .....              ......+...+...  +...  +.-.....+|+++++++.+++.+...+   +++++   +
T Consensus        84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qrl~laral~~~p---~lllLDEPt  156 (255)
T PRK11248         84 WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV--GLEG--AEKRYIWQLSGGQRQRVGIARALAANP---QLLLLDEPF  156 (255)
T ss_pred             CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CChh--HhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCC
Confidence            10000              00111111122111  1111  011112479999999999999887765   67777   7


Q ss_pred             eCCCCCCCChhcHHHHhh
Q 023214          145 TGGDELEDNDETLEDYLG  162 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~  162 (285)
                      +.+|....  ..+.+.+.
T Consensus       157 ~~LD~~~~--~~l~~~L~  172 (255)
T PRK11248        157 GALDAFTR--EQMQTLLL  172 (255)
T ss_pred             ccCCHHHH--HHHHHHHH
Confidence            88886555  55555554

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.01  E-value=1.7e-09  Score=89.30  Aligned_cols=42  Identities=29%  Similarity=0.325  Sum_probs=38.2

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   58 (216)
T TIGR00960        17 PALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKPTRG   58 (216)
T ss_pred             eEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            5899999999999  89999999999999999999998766554

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.01  E-value=2.8e-10  Score=88.25  Aligned_cols=62  Identities=31%  Similarity=0.362  Sum_probs=38.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      ..++|+|++|+|||||+|.|++.....++..      ...+|+....+..    +....||||||+.++...
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFGLW  103 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--GC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccccc
Confidence            6999999999999999999999865544321      1123334333332    335689999999887654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.01  E-value=1.4e-09  Score=90.08  Aligned_cols=44  Identities=16%  Similarity=0.066  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++++..|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   55 (220)
T cd03265          12 DFEAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKPTSG   55 (220)
T ss_pred             CEEeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456899999999999  89999999999999999999998766554

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.00  E-value=4.3e-10  Score=105.04  Aligned_cols=153  Identities=11%  Similarity=0.047  Sum_probs=85.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLF   80 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~   80 (285)
                      +..+++++|+.+..|  ..++|+|+||+|||||+++|+|...+.+|.........+.+..+...  -....++.|...+.
T Consensus       331 ~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~  408 (530)
T PRK15064        331 NGPLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQW  408 (530)
T ss_pred             CceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHh
Confidence            356889999999999  89999999999999999999998766554322111111222211110  00001111110000


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhcH
Q 023214           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDETL  157 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l  157 (285)
                      ......   ...+...+...  +... -+.-.....+|+++++++.+++.+...+   +++++   ++.+|....  ..+
T Consensus       409 ~~~~~~---~~~~~~~l~~~--~l~~-~~~~~~~~~LSgGq~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~l  477 (530)
T PRK15064        409 RQEGDD---EQAVRGTLGRL--LFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQKP---NVLVMDEPTNHMDMESI--ESL  477 (530)
T ss_pred             ccCCcc---HHHHHHHHHHc--CCCh-hHhcCcccccCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHH
Confidence            000000   11111222111  0000 0011112479999999999999887655   77777   899997766  777


Q ss_pred             HHHhhhcCCch
Q 023214          158 EDYLGRECPKP  168 (285)
Q Consensus       158 ~~~l~~~~~~~  168 (285)
                      .+.+....++.
T Consensus       478 ~~~l~~~~~tv  488 (530)
T PRK15064        478 NMALEKYEGTL  488 (530)
T ss_pred             HHHHHHCCCEE
Confidence            77777654433

>PLN03073 ABC transporter F family; Provisional

Probab=98.99  E-value=3e-10  Score=108.77  Aligned_cols=152  Identities=15%  Similarity=0.107  Sum_probs=87.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC---
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF---   80 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~---   80 (285)
                      ..+++++|+.+..|  .+++|+|+||+|||||+++|+|...+..|...........+..+...  ..+.+.+++-+.   
T Consensus       522 ~~il~~vsl~i~~G--e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~--~~l~~~~~~~~~~~~  597 (718)
T PLN03073        522 PLLFKNLNFGIDLD--SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV--DGLDLSSNPLLYMMR  597 (718)
T ss_pred             CeeEeccEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc--ccCCcchhHHHHHHH
Confidence            45899999999999  89999999999999999999998876665432221122223222110  001111110000   


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhcH
Q 023214           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDETL  157 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l  157 (285)
                      ......   ...+...+...  +...-..--.+ ..+|+++++++.+++.++..+   +++|+   +|++|....  ..+
T Consensus       598 ~~~~~~---~~~i~~~L~~~--gl~~~~~~~~~-~~LSgGqkqRvaLAraL~~~p---~lLLLDEPT~~LD~~s~--~~l  666 (718)
T PLN03073        598 CFPGVP---EQKLRAHLGSF--GVTGNLALQPM-YTLSGGQKSRVAFAKITFKKP---HILLLDEPSNHLDLDAV--EAL  666 (718)
T ss_pred             hcCCCC---HHHHHHHHHHC--CCChHHhcCCc-cccCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHH
Confidence            000000   11222222211  11100001112 479999999999999887765   78888   999997765  666


Q ss_pred             HHHhhhcCCchhH
Q 023214          158 EDYLGRECPKPLK  170 (285)
Q Consensus       158 ~~~l~~~~~~~l~  170 (285)
                      .+.+..+.++.+.
T Consensus       667 ~~~L~~~~gtvIi  679 (718)
T PLN03073        667 IQGLVLFQGGVLM  679 (718)
T ss_pred             HHHHHHcCCEEEE
Confidence            6766654444333

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.99  E-value=2e-09  Score=93.47  Aligned_cols=146  Identities=14%  Similarity=0.073  Sum_probs=82.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +..+++++|+++.+|  ..++|+|+||+|||||+++|+|...+.+|.... +.....  ..... ...-.++.+.|.+..
T Consensus        16 ~~~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~-~~~i~~v~q~~~~~~   90 (303)
T TIGR01288        16 DKVVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS--RARLA-RVAIGVVPQFDNLDP   90 (303)
T ss_pred             CeEEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc--cHHHH-hhcEEEEeccccCCc
Confidence            456899999999999  899999999999999999999988665543211 100000  00000 011123344444432


Q ss_pred             CCCCcHHHH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           82 FSAGSEFVG---------------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        82 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      . .+..+..               ..+...+. .+ +...  ..-.....+|+++++++.+++.+...+   +++++   
T Consensus        91 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~-~~-~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEP  162 (303)
T TIGR01288        91 E-FTVRENLLVFGRYFGMSTREIEAVIPSLLE-FA-RLES--KADVRVALLSGGMKRRLTLARALINDP---QLLILDEP  162 (303)
T ss_pred             C-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HC-CChh--HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEeCC
Confidence            1 1111100               01111111 01 1100  001112479999999999999887765   67777   


Q ss_pred             EeCCCCCCCChhcHHHHhhh
Q 023214          144 FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~~  163 (285)
                      ++.+|....  ..+.+.+..
T Consensus       163 t~gLD~~~~--~~l~~~l~~  180 (303)
T TIGR01288       163 TTGLDPHAR--HLIWERLRS  180 (303)
T ss_pred             CcCCCHHHH--HHHHHHHHH
Confidence            888886655  556565543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.99  E-value=2.1e-09  Score=87.92  Aligned_cols=43  Identities=26%  Similarity=0.346  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        13 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   55 (205)
T cd03226          13 TEILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKESSG   55 (205)
T ss_pred             CceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            56899999999999  89999999999999999999998876554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.99  E-value=6.7e-10  Score=92.91  Aligned_cols=44  Identities=27%  Similarity=0.232  Sum_probs=39.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   55 (236)
T cd03219          12 GLVALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRPTSG   55 (236)
T ss_pred             CEEEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            345889999999999  89999999999999999999998766554

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.99  E-value=3.2e-09  Score=85.85  Aligned_cols=45  Identities=22%  Similarity=0.311  Sum_probs=40.0

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++..+++++|+++..|  ..++|+|+||+|||||+++|+|...+..|
T Consensus         3 ~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   47 (190)
T TIGR01166         3 GGPEVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRPQSG   47 (190)
T ss_pred             CccceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3467899999999999  89999999999999999999998766554

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.98  E-value=2.6e-09  Score=87.41  Aligned_cols=44  Identities=32%  Similarity=0.360  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        10 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (206)
T TIGR03608        10 DKIILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKFDSG   53 (206)
T ss_pred             CEEEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            456899999999999  89999999999999999999998766554

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.98  E-value=2e-09  Score=88.55  Aligned_cols=44  Identities=32%  Similarity=0.342  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03301          12 NVTALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEPTSG   55 (213)
T ss_pred             CeeeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            457899999999999  89999999999999999999998766554

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.98  E-value=2.4e-09  Score=88.07  Aligned_cols=44  Identities=25%  Similarity=0.231  Sum_probs=39.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03262          12 DFHVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEPDSG   55 (213)
T ss_pred             CeEeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            356889999999999  89999999999999999999998766554

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.98  E-value=4.6e-10  Score=105.36  Aligned_cols=155  Identities=17%  Similarity=0.051  Sum_probs=88.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~   81 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|....+....+.+..+.. .-...+++.+...+..
T Consensus       336 ~~~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~  413 (556)
T PRK11819        336 DRLLIDDLSFSLPPG--GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGL  413 (556)
T ss_pred             CeeeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhc
Confidence            346899999999999  8999999999999999999999887665543222111222222211 0001111111110000


Q ss_pred             -CC-CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhc
Q 023214           82 -FS-AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDET  156 (285)
Q Consensus        82 -~~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~  156 (285)
                       .. .....  ......+.. + +.... ..-..-..+|+++++++.+++.+...+   +++++   ++++|....  ..
T Consensus       414 ~~~~~~~~~--~~~~~~l~~-~-~l~~~-~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~  483 (556)
T PRK11819        414 DIIKVGNRE--IPSRAYVGR-F-NFKGG-DQQKKVGVLSGGERNRLHLAKTLKQGG---NVLLLDEPTNDLDVETL--RA  483 (556)
T ss_pred             ccccccccH--HHHHHHHHh-C-CCChh-HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HH
Confidence             00 00000  011111111 1 11000 011111479999999999999887765   78887   999998777  78


Q ss_pred             HHHHhhhcCCchh
Q 023214          157 LEDYLGRECPKPL  169 (285)
Q Consensus       157 l~~~l~~~~~~~l  169 (285)
                      +.+++....++.+
T Consensus       484 l~~~l~~~~~tvi  496 (556)
T PRK11819        484 LEEALLEFPGCAV  496 (556)
T ss_pred             HHHHHHhCCCeEE
Confidence            8888876655433

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.98  E-value=5e-09  Score=84.95  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--ccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR--AFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~--~~~~~   48 (285)
                      .++++++++.+.+|  ..++|+|+||+|||||+++|+|..  .+..|
T Consensus        22 ~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G   66 (194)
T cd03213          22 KQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSG   66 (194)
T ss_pred             ccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence            57899999999999  899999999999999999999987  55443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.97  E-value=3.2e-09  Score=87.96  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (222)
T PRK10908         14 GRQALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERPSAG   57 (222)
T ss_pred             CCeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            356899999999999  89999999999999999999998876554

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.97  E-value=3.4e-09  Score=90.01  Aligned_cols=43  Identities=30%  Similarity=0.254  Sum_probs=38.6

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        37 ~~il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p~~G   79 (264)
T PRK13546         37 FFALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLSPTVG   79 (264)
T ss_pred             eEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            45788999999999  89999999999999999999998876554

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.97  E-value=2.5e-09  Score=88.11  Aligned_cols=44  Identities=14%  Similarity=0.231  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+..|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        23 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   66 (214)
T PRK13543         23 EEPVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHVESG   66 (214)
T ss_pred             CceeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence            456899999999999  89999999999999999999998776554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.97  E-value=6.5e-10  Score=104.27  Aligned_cols=155  Identities=17%  Similarity=0.066  Sum_probs=88.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~   81 (285)
                      +..+++++|+.+..|  ..++|+|+||+|||||+++|+|...+.+|....+....+.+..+... .....++.|..-+..
T Consensus       334 ~~~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~  411 (552)
T TIGR03719       334 DKLLIDDLSFKLPPG--GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGL  411 (552)
T ss_pred             CeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhc
Confidence            346889999999999  89999999999999999999998876655432221112222222110 001111211110000


Q ss_pred             --CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhc
Q 023214           82 --FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDET  156 (285)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~  156 (285)
                        .......  ......+.. + +.... ..-..-..+|+++++++.+++.+...+   +++++   ++++|....  ..
T Consensus       412 ~~~~~~~~~--~~~~~~l~~-~-~l~~~-~~~~~~~~LSgGe~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~  481 (552)
T TIGR03719       412 DIIQLGKRE--VPSRAYVGR-F-NFKGS-DQQKKVGQLSGGERNRVHLAKTLKSGG---NVLLLDEPTNDLDVETL--RA  481 (552)
T ss_pred             cccccCcch--HHHHHHHHh-C-CCChh-HhcCchhhCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHH--HH
Confidence              0000000  011111111 1 11100 011111479999999999999887765   78888   999997776  78


Q ss_pred             HHHHhhhcCCchh
Q 023214          157 LEDYLGRECPKPL  169 (285)
Q Consensus       157 l~~~l~~~~~~~l  169 (285)
                      +.+.+....++.+
T Consensus       482 l~~~l~~~~~~vi  494 (552)
T TIGR03719       482 LEEALLEFAGCAV  494 (552)
T ss_pred             HHHHHHHCCCeEE
Confidence            8888876555433

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.97  E-value=1.3e-09  Score=101.92  Aligned_cols=151  Identities=17%  Similarity=0.089  Sum_probs=82.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccce---------eEEEEEEEeeCCceEEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS---------TCEMQRTVLKDGQVVNV   73 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~---------~~~~~~~~~~~~~~~~l   73 (285)
                      +++++|+|+++++|  .+++++|++|+|||||++.|+|...+..|.... +...         .+.+.++.. .=-+-++
T Consensus       348 ~~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~-~lF~~TI  424 (529)
T TIGR02868       348 PPVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDA-HLFDTTV  424 (529)
T ss_pred             CceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCc-ccccccH
Confidence            45899999999999  899999999999999999999988776654321 1100         111111110 0000011


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHH--hhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214           74 IDTPGLFDFSAGSEFVGKEIVKCI--GMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG  147 (285)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~  147 (285)
                      -|.--++.+..+++++.+-+..+-  .....-+++.--.+ +.+..+|+++++++...+..+.++   +++++   ++..
T Consensus       425 ~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~---~iliLDE~TSaL  501 (529)
T TIGR02868       425 RDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA---PILLLDEPTEHL  501 (529)
T ss_pred             HHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccC
Confidence            111111112222333322222110  00001123322222 334579999999999999998766   78877   6777


Q ss_pred             CCCCCChhcHHHHhh
Q 023214          148 DELEDNDETLEDYLG  162 (285)
Q Consensus       148 D~~~~~~~~l~~~l~  162 (285)
                      |....  ..+.+.+.
T Consensus       502 D~~te--~~I~~~l~  514 (529)
T TIGR02868       502 DAGTE--SELLEDLL  514 (529)
T ss_pred             CHHHH--HHHHHHHH
Confidence            75443  44444443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.96  E-value=2.6e-09  Score=88.66  Aligned_cols=45  Identities=27%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      |+.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        33 ~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G   77 (224)
T cd03220          33 GEFWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPPDSG   77 (224)
T ss_pred             CCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4567899999999999  89999999999999999999998765543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=6e-10  Score=99.09  Aligned_cols=141  Identities=23%  Similarity=0.163  Sum_probs=86.5

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      |++.+..+-++....|  +|.+|||+||+|||||+++|....+  +   ..++-..             +.=.|||-..+
T Consensus        91 G~k~LL~~a~L~L~~G--rRYGLvGrNG~GKsTLLRaia~~~v--~---~f~veqE-------------~~g~~t~~~~~  150 (582)
T KOG0062|consen   91 GGKILLNKANLTLSRG--RRYGLVGRNGIGKSTLLRAIANGQV--S---GFHVEQE-------------VRGDDTEALQS  150 (582)
T ss_pred             cchhhhcCCceeeecc--cccceeCCCCCcHHHHHHHHHhcCc--C---ccCchhh-------------eeccchHHHhh
Confidence            6677888889999999  9999999999999999999986222  1   1111111             11122222211


Q ss_pred             CCCCcHH---------------HHHHHHH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214           82 FSAGSEF---------------VGKEIVK-CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--  143 (285)
Q Consensus        82 ~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--  143 (285)
                      ...++..               ...++.. .+.-..-.++  .-.. +...+|++=+.++.+.+.+|..+   -++++  
T Consensus       151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~e--mq~~-pt~slSGGWrMrlaLARAlf~~p---DlLLLDE  224 (582)
T KOG0062|consen  151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPE--MQLQ-PTKSLSGGWRMRLALARALFAKP---DLLLLDE  224 (582)
T ss_pred             hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHH--HHhc-cccccCcchhhHHHHHHHHhcCC---CEEeecC
Confidence            1111100               0111111 1110000111  1122 23479999999999999999875   56666  


Q ss_pred             -EeCCCCCCCChhcHHHHhhhcCCchhH
Q 023214          144 -FTGGDELEDNDETLEDYLGRECPKPLK  170 (285)
Q Consensus       144 -~nk~D~~~~~~~~l~~~l~~~~~~~l~  170 (285)
                       +||+|...-  ..+++||...+.+.|.
T Consensus       225 PTNhLDv~av--~WLe~yL~t~~~T~li  250 (582)
T KOG0062|consen  225 PTNHLDVVAV--AWLENYLQTWKITSLI  250 (582)
T ss_pred             CcccchhHHH--HHHHHHHhhCCceEEE
Confidence             999998776  8999999977766666

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.96  E-value=3.8e-09  Score=88.78  Aligned_cols=44  Identities=23%  Similarity=0.212  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (243)
T TIGR02315        14 GKQALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEPSSG   57 (243)
T ss_pred             CcceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            456899999999999  89999999999999999999998866554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.96  E-value=1.1e-09  Score=91.29  Aligned_cols=44  Identities=25%  Similarity=0.253  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   55 (232)
T cd03218          12 KRKVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSG   55 (232)
T ss_pred             CEEeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            346889999999999  89999999999999999999998876554

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.96  E-value=9.5e-10  Score=90.55  Aligned_cols=44  Identities=27%  Similarity=0.356  Sum_probs=39.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        11 ~~~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G   54 (213)
T cd03235          11 GHPVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKPTSG   54 (213)
T ss_pred             CEEeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            346889999999999  89999999999999999999998876554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.96  E-value=1.3e-09  Score=88.97  Aligned_cols=44  Identities=18%  Similarity=0.253  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++++.+.+|  .+++|+|+||+|||||++.|+|...+.+|
T Consensus        12 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (201)
T cd03231          12 GRALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPPLAG   55 (201)
T ss_pred             CceeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            456789999999999  89999999999999999999998866554

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.96  E-value=3.8e-09  Score=88.74  Aligned_cols=44  Identities=27%  Similarity=0.252  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (242)
T PRK11124         14 AHQALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMPRSG   57 (242)
T ss_pred             CeeeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456899999999999  89999999999999999999998766554

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.95  E-value=2.8e-09  Score=84.66  Aligned_cols=42  Identities=29%  Similarity=0.292  Sum_probs=38.4

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .+++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        16 ~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~~G   57 (171)
T cd03228          16 PVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPTSG   57 (171)
T ss_pred             ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            6899999999999  89999999999999999999998876554

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.95  E-value=2.4e-09  Score=88.48  Aligned_cols=42  Identities=21%  Similarity=0.217  Sum_probs=38.5

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++++++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        19 ~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   60 (218)
T cd03266          19 QAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEPDAG   60 (218)
T ss_pred             eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            6899999999999  89999999999999999999998766554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd01858 NGP_1 NGP-1

Probab=98.95  E-value=2e-09  Score=84.30  Aligned_cols=55  Identities=24%  Similarity=0.318  Sum_probs=40.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (285)
                      .+|+++|.+|+|||||+|+|+|......+.. .+.|.......    .+..+.++||||+
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~liDtPGi  157 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYIT----LMKRIYLIDCPGV  157 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEE----cCCCEEEEECcCC
Confidence            7899999999999999999999876555443 34455443322    2455899999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.95  E-value=1e-09  Score=92.15  Aligned_cols=43  Identities=23%  Similarity=0.249  Sum_probs=38.8

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (242)
T cd03295          14 KKAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEPTSG   56 (242)
T ss_pred             ceEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            46889999999999  89999999999999999999998766554

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.95  E-value=2.7e-09  Score=87.53  Aligned_cols=44  Identities=27%  Similarity=0.282  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (208)
T cd03268          12 KKRVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKPDSG   55 (208)
T ss_pred             CeEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            456899999999999  89999999999999999999998766554

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.95  E-value=4.1e-09  Score=88.46  Aligned_cols=43  Identities=26%  Similarity=0.239  Sum_probs=38.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   56 (241)
T cd03256          14 KKALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEPTSG   56 (241)
T ss_pred             cEEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            56899999999999  89999999999999999999998765554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.95  E-value=4.2e-09  Score=91.45  Aligned_cols=146  Identities=15%  Similarity=0.057  Sum_probs=83.7

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +..+++++|+.+..|  ..++|+|+||+|||||+++|+|...+.+|.... +....  ...... ...-.++.+.|++..
T Consensus        19 ~~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~--~~~~~~-~~~ig~v~q~~~~~~   93 (306)
T PRK13537         19 DKLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP--SRARHA-RQRVGVVPQFDNLDP   93 (306)
T ss_pred             CeEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecc--cchHHH-HhcEEEEeccCcCCC
Confidence            456889999999999  899999999999999999999988766543211 10000  000000 112244555666543


Q ss_pred             CCCCcHHHHHH---------------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           82 FSAGSEFVGKE---------------IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        82 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      . .+..+....               +...+.. + +...  ..-..-..+|.+.++++..++.+...+   +++++   
T Consensus        94 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LS~G~~qrl~la~aL~~~P---~lllLDEP  165 (306)
T PRK13537         94 D-FTVRENLLVFGRYFGLSAAAARALVPPLLEF-A-KLEN--KADAKVGELSGGMKRRLTLARALVNDP---DVLVLDEP  165 (306)
T ss_pred             C-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CCch--HhcCchhhCCHHHHHHHHHHHHHhCCC---CEEEEeCC
Confidence            2 111111111               1011110 0 0000  000111379999999999999888765   67777   


Q ss_pred             EeCCCCCCCChhcHHHHhhh
Q 023214          144 FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~~  163 (285)
                      ++.+|-...  ..+.+.+..
T Consensus       166 t~gLD~~~~--~~l~~~l~~  183 (306)
T PRK13537        166 TTGLDPQAR--HLMWERLRS  183 (306)
T ss_pred             CcCCCHHHH--HHHHHHHHH
Confidence            888886655  555555543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.95  E-value=3.5e-09  Score=88.14  Aligned_cols=42  Identities=29%  Similarity=0.321  Sum_probs=38.4

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++|+++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        24 ~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G   65 (228)
T PRK10584         24 SILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSG   65 (228)
T ss_pred             EEEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            4899999999999  89999999999999999999998866554

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.94  E-value=1.3e-09  Score=90.14  Aligned_cols=43  Identities=26%  Similarity=0.210  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+++|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        17 ~~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   59 (218)
T cd03255          17 VQALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRPTSG   59 (218)
T ss_pred             eeEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence            46899999999999  89999999999999999999998876554

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.94  E-value=6.9e-10  Score=99.27  Aligned_cols=45  Identities=27%  Similarity=0.337  Sum_probs=40.1

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++..+++++||.+..|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p~sG   58 (402)
T PRK09536         14 GDTTVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTPTAG   58 (402)
T ss_pred             CCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            3467899999999999  89999999999999999999998876654

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.94  E-value=5e-09  Score=87.48  Aligned_cols=42  Identities=29%  Similarity=0.340  Sum_probs=38.7

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++++++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        19 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   60 (233)
T cd03258          19 TALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERPTSG   60 (233)
T ss_pred             eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            7899999999999  89999999999999999999999876554

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.94  E-value=3e-09  Score=86.57  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=39.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (198)
T TIGR01189        12 ERMLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRPDSG   55 (198)
T ss_pred             CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            456889999999999  89999999999999999999998765554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=3.3e-09  Score=96.21  Aligned_cols=145  Identities=16%  Similarity=0.064  Sum_probs=85.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-ccee-----EEEEEEEeeCCceEEEE--
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTST-----CEMQRTVLKDGQVVNVI--   74 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~t~~-----~~~~~~~~~~~~~~~li--   74 (285)
                      |++...++|+++++|  .++++||++|+|||||++.|+|...+..|..... ++..     .....+.|-....+.+-  
T Consensus       333 g~~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gT  410 (559)
T COG4988         333 GKPALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGT  410 (559)
T ss_pred             CCcccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcccccc
Confidence            347889999999999  8999999999999999999999987655432211 1000     00011112111122222  


Q ss_pred             --eCCCCCCCCCCcHHHHHHHHHHH-hhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214           75 --DTPGLFDFSAGSEFVGKEIVKCI-GMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG  147 (285)
Q Consensus        75 --DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~  147 (285)
                        |...+..+..+++++.+-+...- ....+.+++.=.++ +.+..+|+++.+++.+.+..+.+.   +++++   +.|.
T Consensus       411 ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~---~l~llDEpTA~L  487 (559)
T COG4988         411 IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTAHL  487 (559)
T ss_pred             HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC---CEEEecCCccCC
Confidence              11222222223333322222221 11122244444444 446679999999999999987764   78887   8999


Q ss_pred             CCCCC
Q 023214          148 DELED  152 (285)
Q Consensus       148 D~~~~  152 (285)
                      |..+.
T Consensus       488 D~etE  492 (559)
T COG4988         488 DAETE  492 (559)
T ss_pred             CHhHH
Confidence            97654

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.94  E-value=1.8e-09  Score=92.05  Aligned_cols=148  Identities=18%  Similarity=0.165  Sum_probs=81.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEE---eeCCceEEEEeCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTV---LKDGQVVNVIDTPG   78 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~---~~~~~~~~liDtpG   78 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.... +.... ......   .....-.++.+.|.
T Consensus        36 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~-~~~~~~~~~~~~~~i~~v~q~~~  112 (269)
T cd03294          36 QTVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA-AMSRKELRELRRKKISMVFQSFA  112 (269)
T ss_pred             CceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc-ccChhhhhhhhcCcEEEEecCcc
Confidence            455789999999999  899999999999999999999988765543211 10000 000000   00011223444454


Q ss_pred             CCCCCCCcHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214           79 LFDFSAGSEFV--------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-  143 (285)
Q Consensus        79 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-  143 (285)
                      +.......+.+              ...+...+.. + +...  ++-..-..+|.++++++.+++.+...+   +++++ 
T Consensus       113 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LS~Gq~qrv~lAral~~~p---~illLD  185 (269)
T cd03294         113 LLPHRTVLENVAFGLEVQGVPRAEREERAAEALEL-V-GLEG--WEHKYPDELSGGMQQRVGLARALAVDP---DILLMD  185 (269)
T ss_pred             cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-c-CCHh--HhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEc
Confidence            43211101100              0111111111 1 1111  111111479999999999999987765   67777 


Q ss_pred             --EeCCCCCCCChhcHHHHhh
Q 023214          144 --FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 --~nk~D~~~~~~~~l~~~l~  162 (285)
                        ++.+|....  ..+.+.+.
T Consensus       186 EPt~~LD~~~~--~~l~~~l~  204 (269)
T cd03294         186 EAFSALDPLIR--REMQDELL  204 (269)
T ss_pred             CCCccCCHHHH--HHHHHHHH
Confidence              777776554  45555443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.94  E-value=3.3e-09  Score=87.75  Aligned_cols=145  Identities=18%  Similarity=0.173  Sum_probs=80.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.... +.....  ....+ ...-.++.+.|.+...
T Consensus        15 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~~-~~~i~~v~q~~~~~~~   89 (220)
T cd03263          15 KPAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT--DRKAA-RQSLGYCPQFDALFDE   89 (220)
T ss_pred             ceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc--chHHH-hhhEEEecCcCCcccc
Confidence            57899999999999  899999999999999999999988765543211 110000  00000 0111233444444321


Q ss_pred             CCCcHH--------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214           83 SAGSEF--------------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT  145 (285)
Q Consensus        83 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n  145 (285)
                      ....+.              ....+...+.. + +...  +.-.....+|.++++++..++.+..++   +++++   ++
T Consensus        90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p---~llllDEP~~  162 (220)
T cd03263          90 LTVREHLRFYARLKGLPKSEIKEEVELLLRV-L-GLTD--KANKRARTLSGGMKRKLSLAIALIGGP---SVLLLDEPTS  162 (220)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CCHH--HHhChhhhCCHHHHHHHHHHHHHhcCC---CEEEECCCCC
Confidence            111110              00111111111 1 1110  001112469999999999998887765   67776   77


Q ss_pred             CCCCCCCChhcHHHHhh
Q 023214          146 GGDELEDNDETLEDYLG  162 (285)
Q Consensus       146 k~D~~~~~~~~l~~~l~  162 (285)
                      .+|....  ..+.+.+.
T Consensus       163 ~LD~~~~--~~l~~~l~  177 (220)
T cd03263         163 GLDPASR--RAIWDLIL  177 (220)
T ss_pred             CCCHHHH--HHHHHHHH
Confidence            7775544  45555554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.94  E-value=4.8e-09  Score=98.51  Aligned_cols=45  Identities=20%  Similarity=0.141  Sum_probs=40.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++||.+..|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        19 ~~~il~~vs~~i~~G--e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~   63 (556)
T PRK11819         19 KKQILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKEFEGE   63 (556)
T ss_pred             CCeeeeCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            467999999999999  899999999999999999999988765543

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.94  E-value=4.7e-09  Score=86.88  Aligned_cols=43  Identities=23%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        18 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G   60 (221)
T TIGR02211        18 TRVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNPTSG   60 (221)
T ss_pred             eEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            35899999999999  89999999999999999999999876554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.93  E-value=4.3e-09  Score=82.91  Aligned_cols=44  Identities=25%  Similarity=0.246  Sum_probs=39.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   55 (163)
T cd03216          12 GVKALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKPDSG   55 (163)
T ss_pred             CeEEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            456899999999999  89999999999999999999998765443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.93  E-value=3.9e-09  Score=84.00  Aligned_cols=43  Identities=21%  Similarity=0.333  Sum_probs=38.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        15 ~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G   57 (173)
T cd03246          15 PPVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSG   57 (173)
T ss_pred             CcceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            35899999999999  89999999999999999999998766554

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.93  E-value=4.1e-09  Score=88.38  Aligned_cols=44  Identities=32%  Similarity=0.338  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (239)
T cd03296          14 DFVALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERPDSG   57 (239)
T ss_pred             CEEeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            356899999999999  89999999999999999999998766554

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.93  E-value=5.8e-09  Score=85.91  Aligned_cols=43  Identities=28%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (214)
T cd03292          14 TAALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSG   56 (214)
T ss_pred             ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            46899999999999  89999999999999999999998765554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.93  E-value=9.6e-08  Score=85.52  Aligned_cols=130  Identities=15%  Similarity=0.186  Sum_probs=75.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh------CCcccccccCCC-----------CcceeEEEEEEEee-------------
Q 023214           17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSS-----------GVTSTCEMQRTVLK-------------   66 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~------g~~~~~~~~~~~-----------~~t~~~~~~~~~~~-------------   66 (285)
                      +++..|+++|++|+||||++..|+      |..+......+.           +......++.....             
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            334689999999999999999887      433221111110           00000111111100             


Q ss_pred             ---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214           67 ---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (285)
Q Consensus        67 ---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil  143 (285)
                         .+..++||||||...   .+.....++.......  .+|.+++|+|+..+..  .......+...++     +.-++
T Consensus       178 ~~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~~--~p~e~lLVlda~~Gq~--a~~~a~~F~~~~~-----~~g~I  245 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEAI--QPDNIIFVMDGSIGQA--AEAQAKAFKDSVD-----VGSVI  245 (429)
T ss_pred             HHhCCCCEEEEECCCCCc---chHHHHHHHHHHhhhc--CCcEEEEEeccccChh--HHHHHHHHHhccC-----CcEEE
Confidence               145799999999763   3455667777766433  5688899999753322  2223333333222     67889


Q ss_pred             EeCCCCCCCChhcHH
Q 023214          144 FTGGDELEDNDETLE  158 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~  158 (285)
                      +||+|.....+..+.
T Consensus       246 lTKlD~~argG~aLs  260 (429)
T TIGR01425       246 ITKLDGHAKGGGALS  260 (429)
T ss_pred             EECccCCCCccHHhh
Confidence            999998765434443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.93  E-value=5.6e-09  Score=91.75  Aligned_cols=147  Identities=18%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-CCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (285)
                      |+..+++++||.+..|  ..++|+|+||+|||||+++|+|...+.+|... .|.....  ..... ...-.++.+.|.+.
T Consensus        52 ~~~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~--~~~~~-~~~ig~v~q~~~~~  126 (340)
T PRK13536         52 GDKAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA--RARLA-RARIGVVPQFDNLD  126 (340)
T ss_pred             CCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCc--chHHH-hccEEEEeCCccCC
Confidence            3456889999999999  89999999999999999999998876654321 0100000  00000 11123445555554


Q ss_pred             CCCCCcHHHHHH---------------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214           81 DFSAGSEFVGKE---------------IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--  143 (285)
Q Consensus        81 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--  143 (285)
                      .. .+..+....               +...+. .+ +...  ..-..-..+|.+.++.+..+..+...+   +++|+  
T Consensus       127 ~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~-~~-~L~~--~~~~~~~~LS~G~kqrv~lA~aL~~~P---~lLiLDE  198 (340)
T PRK13536        127 LE-FTVRENLLVFGRYFGMSTREIEAVIPSLLE-FA-RLES--KADARVSDLSGGMKRRLTLARALINDP---QLLILDE  198 (340)
T ss_pred             CC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHH-Hc-CCch--hhCCChhhCCHHHHHHHHHHHHHhcCC---CEEEEEC
Confidence            22 111111110               001110 00 0000  000011369999999999999887765   67777  


Q ss_pred             -EeCCCCCCCChhcHHHHhhh
Q 023214          144 -FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 -~nk~D~~~~~~~~l~~~l~~  163 (285)
                       ++.+|-...  ..+.+.+..
T Consensus       199 Pt~gLD~~~r--~~l~~~l~~  217 (340)
T PRK13536        199 PTTGLDPHAR--HLIWERLRS  217 (340)
T ss_pred             CCCCCCHHHH--HHHHHHHHH
Confidence             788886555  555555543

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.92  E-value=1.4e-09  Score=91.28  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G   57 (242)
T TIGR03411        14 GFKALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRPDEG   57 (242)
T ss_pred             CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            356899999999999  89999999999999999999998776554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.92  E-value=4.8e-09  Score=85.55  Aligned_cols=43  Identities=23%  Similarity=0.160  Sum_probs=39.2

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .+++|+||++..|  .+|+|||+||||||||++.|+|-..|++|.
T Consensus        41 ~aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~   83 (249)
T COG1134          41 WALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPTSGK   83 (249)
T ss_pred             EEecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCCCce
Confidence            4688999999999  899999999999999999999999877653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.92  E-value=6.4e-09  Score=97.62  Aligned_cols=45  Identities=20%  Similarity=0.148  Sum_probs=40.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++|+.+..|  ..++|+|+||+|||||+++|+|...+..|.
T Consensus        17 ~~~il~~is~~i~~G--e~~~liG~NGsGKSTLl~~i~G~~~p~~G~   61 (552)
T TIGR03719        17 KKEILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKEFNGE   61 (552)
T ss_pred             CCeeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            457899999999999  899999999999999999999988665543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.92  E-value=1.7e-09  Score=88.20  Aligned_cols=39  Identities=31%  Similarity=0.473  Sum_probs=35.9

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|..
T Consensus        12 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~   50 (200)
T cd03217          12 GKEILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHP   50 (200)
T ss_pred             CEEeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence            346899999999999  899999999999999999999984

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.92  E-value=8.2e-09  Score=87.12  Aligned_cols=44  Identities=18%  Similarity=0.261  Sum_probs=39.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        15 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (250)
T PRK11264         15 GQTVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQPEAG   58 (250)
T ss_pred             CeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            456899999999999  89999999999999999999998765554

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.92  E-value=5.8e-09  Score=89.09  Aligned_cols=44  Identities=20%  Similarity=0.148  Sum_probs=39.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        13 ~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (271)
T PRK13638         13 DEPVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRPQKG   56 (271)
T ss_pred             CcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCcc
Confidence            456899999999999  89999999999999999999998876655

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.92  E-value=1e-09  Score=90.91  Aligned_cols=44  Identities=34%  Similarity=0.402  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (222)
T cd03224          12 KSQILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLPPRSG   55 (222)
T ss_pred             CeeEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            456889999999999  89999999999999999999998876554

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.91  E-value=1.4e-09  Score=88.89  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        13 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G   56 (204)
T PRK13538         13 ERILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARPDAG   56 (204)
T ss_pred             CEEEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            346889999999999  89999999999999999999998876554

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.91  E-value=5.9e-09  Score=87.24  Aligned_cols=45  Identities=22%  Similarity=0.187  Sum_probs=39.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        13 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~   57 (236)
T TIGR03864        13 ARRALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVAQEGQ   57 (236)
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            356889999999999  899999999999999999999988766553

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.91  E-value=1.1e-09  Score=93.29  Aligned_cols=44  Identities=23%  Similarity=0.313  Sum_probs=39.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        23 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   66 (265)
T PRK10575         23 GRTLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPPSEG   66 (265)
T ss_pred             CEEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            346899999999999  89999999999999999999998765554

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.91  E-value=3.6e-09  Score=99.87  Aligned_cols=150  Identities=15%  Similarity=0.094  Sum_probs=86.2

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-cc----------eeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VT----------STCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~t----------~~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+.+++|  .+|+|+|++|+|||||++.|+|...+..|..... ..          ....+.++.. .=..-+
T Consensus       345 ~~il~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~-~lf~~T  421 (571)
T TIGR02203       345 RPALDSISLVIEPG--ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV-VLFNDT  421 (571)
T ss_pred             CccccCeeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCc-cccccc
Confidence            46889999999999  8999999999999999999999987766543211 00          0011111110 000001


Q ss_pred             EEeCCCCCCC-CCCcHHHHHHHHHH-----HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           73 VIDTPGLFDF-SAGSEFVGKEIVKC-----IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        73 liDtpG~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      +-|.-.++++ ..+++.+..-+..+     +.....+.|.  .+-+.+..+|+++++++..++..+.++   +++++   
T Consensus       422 i~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt--~i~~~g~~LSgGqrQRiaLARall~~~---~illLDEp  496 (571)
T TIGR02203       422 IANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT--PIGENGVLLSGGQRQRLAIARALLKDA---PILILDEA  496 (571)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccc--eecCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEeCc
Confidence            1111111211 12223222222211     1111112232  122335579999999999999998766   78887   


Q ss_pred             EeCCCCCCCChhcHHHHhhh
Q 023214          144 FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~~  163 (285)
                      ++.+|....  ..+.+.+.+
T Consensus       497 ts~LD~~~~--~~i~~~L~~  514 (571)
T TIGR02203       497 TSALDNESE--RLVQAALER  514 (571)
T ss_pred             cccCCHHHH--HHHHHHHHH
Confidence            888887665  556555554

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.91  E-value=8e-10  Score=88.38  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=38.2

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G   57 (178)
T cd03247          16 QVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQG   57 (178)
T ss_pred             cceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            6899999999999  89999999999999999999998766554

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.91  E-value=3.2e-09  Score=79.08  Aligned_cols=113  Identities=18%  Similarity=0.131  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..+.++|--.+|||||+|.++.... ..   ...+|+....+.+.- ++..+.++|.||..-+.           .....
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~-~e---dmiptvGfnmrk~tk-gnvtiklwD~gGq~rfr-----------smWer   84 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQY-LE---DMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFR-----------SMWER   84 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccc-hh---hhcccccceeEEecc-CceEEEEEecCCCccHH-----------HHHHH
Confidence            7899999999999999999874221 11   123455555555544 56779999999976432           23335


Q ss_pred             ccCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhCccc--cCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKI--FDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~~--~~~~iil~nk~D~~~~  152 (285)
                      +++++++++|++|+.++  ++... ..   +..++..+.  ..|++++.||.|....
T Consensus        85 ycR~v~aivY~VDaad~~k~~~sr-~E---L~~LL~k~~l~gip~LVLGnK~d~~~A  137 (186)
T KOG0075|consen   85 YCRGVSAIVYVVDAADPDKLEASR-SE---LHDLLDKPSLTGIPLLVLGNKIDLPGA  137 (186)
T ss_pred             HhhcCcEEEEEeecCCcccchhhH-HH---HHHHhcchhhcCCcEEEecccccCccc
Confidence            57899999999999643  33322 22   222223332  2599999999998765

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.91  E-value=6.9e-09  Score=86.64  Aligned_cols=43  Identities=19%  Similarity=0.241  Sum_probs=38.6

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        22 ~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   64 (233)
T PRK11629         22 TDVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSG   64 (233)
T ss_pred             eeeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            35899999999999  89999999999999999999998765554

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.90  E-value=3.1e-09  Score=89.21  Aligned_cols=145  Identities=17%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|.... +.... ....... ...-.++.+.|.+..
T Consensus        15 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~~~~~-~~~i~~~~q~~~~~~   90 (241)
T PRK14250         15 GKEILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK-TIDVIDL-RRKIGMVFQQPHLFE   90 (241)
T ss_pred             CeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh-hcChHHh-hhcEEEEecCchhch
Confidence            456899999999999  899999999999999999999987665543211 10000 0000000 001122333333321


Q ss_pred             CCCCcHH-----------HHHHHHHHHhhccCCcc-EEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214           82 FSAGSEF-----------VGKEIVKCIGMAKDGIH-AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG  146 (285)
Q Consensus        82 ~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk  146 (285)
                      .  +..+           ....+...+.. + +.. .  +.-.....+|+++++++.+++.+...+   +++++   ++.
T Consensus        91 ~--tv~e~l~~~~~~~~~~~~~~~~~l~~-~-~l~~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~llllDEPt~~  161 (241)
T PRK14250         91 G--TVKDNIEYGPMLKGEKNVDVEYYLSI-V-GLNKE--YATRDVKNLSGGEAQRVSIARTLANNP---EVLLLDEPTSA  161 (241)
T ss_pred             h--hHHHHHhcchhhcCcHHHHHHHHHHH-c-CCCHH--HhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCccc
Confidence            1  0000           00111111111 1 110 0  011112479999999999999887765   67777   788


Q ss_pred             CCCCCCChhcHHHHhh
Q 023214          147 GDELEDNDETLEDYLG  162 (285)
Q Consensus       147 ~D~~~~~~~~l~~~l~  162 (285)
                      +|....  ..+.+.+.
T Consensus       162 LD~~~~--~~l~~~l~  175 (241)
T PRK14250        162 LDPTST--EIIEELIV  175 (241)
T ss_pred             CCHHHH--HHHHHHHH
Confidence            886544  55555554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.90  E-value=6.8e-09  Score=82.58  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=35.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+..+ ++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~-~~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   54 (177)
T cd03222          12 VFFLLVE-LGVVKEG--EVIGIVGPNGTGKTTAVKILAGQLIPNGD   54 (177)
T ss_pred             CEEEEcc-CcEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence            3445555 3788899  89999999999999999999998866543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.90  E-value=1.4e-09  Score=101.53  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=40.5

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ++.++++++|+.+..|  .+++|+|+||+|||||+++|+|...+..|.
T Consensus        12 ~~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~   57 (530)
T PRK15064         12 GAKPLFENISVKFGGG--NRYGLIGANGCGKSTFMKILGGDLEPSAGN   57 (530)
T ss_pred             CCcEeEeCCEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            4567899999999999  899999999999999999999987665543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.90  E-value=1.8e-09  Score=102.17  Aligned_cols=152  Identities=14%  Similarity=0.108  Sum_probs=85.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccce----------eEEEEEEEeeCCceE
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS----------TCEMQRTVLKDGQVV   71 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~----------~~~~~~~~~~~~~~~   71 (285)
                      +.++++++|+.+++|  .+++|+|++|+|||||++.|+|.. |..|.... +...          ...+.++.. .=-+-
T Consensus       362 ~~~vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~LF~~  437 (588)
T PRK11174        362 GKTLAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNP-QLPHG  437 (588)
T ss_pred             CCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCC-cCCCc
Confidence            356889999999999  899999999999999999999988 55543211 1000          011111100 00000


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHh--hccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214           72 NVIDTPGLFDFSAGSEFVGKEIVKCIG--MAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT  145 (285)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n  145 (285)
                      ++-|.--++.+..+++++..-+..+-.  ....-+++.--.+ +.+..+|+++++++..++..+.++   +++++   ++
T Consensus       438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~---~IliLDE~TS  514 (588)
T PRK11174        438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC---QLLLLDEPTA  514 (588)
T ss_pred             CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCcc
Confidence            111111111222233333222222100  0001122322222 335579999999999999998876   78887   88


Q ss_pred             CCCCCCCChhcHHHHhhh
Q 023214          146 GGDELEDNDETLEDYLGR  163 (285)
Q Consensus       146 k~D~~~~~~~~l~~~l~~  163 (285)
                      .+|....  ..+.+.+..
T Consensus       515 aLD~~te--~~i~~~l~~  530 (588)
T PRK11174        515 SLDAHSE--QLVMQALNA  530 (588)
T ss_pred             CCCHHHH--HHHHHHHHH
Confidence            8886655  555555543

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.90  E-value=1.5e-09  Score=91.89  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   60 (255)
T PRK11300         17 GLLAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKPTGG   60 (255)
T ss_pred             CEEEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            456889999999999  89999999999999999999999876655

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.90  E-value=2.6e-09  Score=88.76  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+++|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        19 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   62 (225)
T PRK10247         19 DAKILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISPTSG   62 (225)
T ss_pred             CceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            456899999999999  89999999999999999999998766554

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.89  E-value=7.2e-09  Score=86.70  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        33 ~~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G   76 (236)
T cd03267          33 EVEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQPTSG   76 (236)
T ss_pred             CeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            456899999999999  89999999999999999999998766554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.89  E-value=5e-09  Score=101.31  Aligned_cols=150  Identities=19%  Similarity=0.195  Sum_probs=87.6

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Cc----------ceeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GV----------TSTCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~----------t~~~~~~~~~~~~~~~~~   72 (285)
                      +++++++|+.+++|  .+|+|+|++|+|||||++.|+|...|..|.... +.          ...+.+.++.. .=-.-+
T Consensus       492 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~gT  568 (710)
T TIGR03796       492 PPLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDI-FLFEGT  568 (710)
T ss_pred             CCcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCC-hhhhcc
Confidence            56899999999999  899999999999999999999998776653211 00          01111111111 000011


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHH-----HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKC-----IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      +-|..-+.++..+++.+.+-+..+     +.....+.|..  +-+.+..+|+++++++..++..+.++   +++++   +
T Consensus       569 i~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~--i~e~G~~LSGGQrQRiaLARall~~p---~iliLDEpt  643 (710)
T TIGR03796       569 VRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAE--LAEGGANLSGGQRQRLEIARALVRNP---SILILDEAT  643 (710)
T ss_pred             HHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccce--eccCCCCCCHHHHHHHHHHHHHhhCC---CEEEEECcc
Confidence            111111222222233332222211     11111122321  22445689999999999999998776   78887   8


Q ss_pred             eCCCCCCCChhcHHHHhhh
Q 023214          145 TGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~~  163 (285)
                      +.+|....  ..+.+.+..
T Consensus       644 S~LD~~te--~~i~~~l~~  660 (710)
T TIGR03796       644 SALDPETE--KIIDDNLRR  660 (710)
T ss_pred             ccCCHHHH--HHHHHHHHh
Confidence            88886655  566666654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.89  E-value=7.7e-09  Score=88.23  Aligned_cols=44  Identities=27%  Similarity=0.335  Sum_probs=39.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        19 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   62 (269)
T PRK11831         19 NRCIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAPDHG   62 (269)
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            346789999999999  89999999999999999999999866554

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.89  E-value=4.4e-09  Score=84.40  Aligned_cols=41  Identities=22%  Similarity=0.322  Sum_probs=37.0

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (182)
T cd03215          15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASG   55 (182)
T ss_pred             eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            578899999999  89999999999999999999999876554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.89  E-value=1.4e-09  Score=89.42  Aligned_cols=146  Identities=17%  Similarity=0.131  Sum_probs=79.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +.++++++|+.+.+|   .++|+|+||+|||||+++|+|...+.+|.... +.....  ....+ ...-..+.+.|.++.
T Consensus        12 ~~~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~~-~~~i~~~~q~~~~~~   85 (211)
T cd03264          12 KKRALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK--QPQKL-RRRIGYLPQEFGVYP   85 (211)
T ss_pred             CEEEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcccc--chHHH-HhheEEecCCCcccc
Confidence            346889999999997   89999999999999999999987665543210 100000  00000 011122333443332


Q ss_pred             CCCCcHH--------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           82 FSAGSEF--------------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        82 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      .....+.              ....+...+.. + +....  .-.....+|.++++++..++.+..++   +++++   +
T Consensus        86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p---~llllDEPt  158 (211)
T cd03264          86 NFTVREFLDYIAWLKGIPSKEVKARVDEVLEL-V-NLGDR--AKKKIGSLSGGMRRRVGIAQALVGDP---SILIVDEPT  158 (211)
T ss_pred             cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C-CCHHH--HhCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCc
Confidence            1010010              01111111111 1 11110  11112469999999999999887765   66776   7


Q ss_pred             eCCCCCCCChhcHHHHhhh
Q 023214          145 TGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~~  163 (285)
                      +.+|....  ..+.+++..
T Consensus       159 ~~LD~~~~--~~l~~~l~~  175 (211)
T cd03264         159 AGLDPEER--IRFRNLLSE  175 (211)
T ss_pred             ccCCHHHH--HHHHHHHHH
Confidence            77775544  555555543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.89  E-value=2.1e-09  Score=90.27  Aligned_cols=44  Identities=30%  Similarity=0.362  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        15 ~~~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   58 (241)
T PRK10895         15 GRRVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPRDAG   58 (241)
T ss_pred             CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            346889999999999  89999999999999999999998876554

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.89  E-value=8.2e-09  Score=91.85  Aligned_cols=45  Identities=31%  Similarity=0.351  Sum_probs=39.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +..+++++|+.+..|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        15 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~   59 (369)
T PRK11000         15 DVVISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDITSGD   59 (369)
T ss_pred             CeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            446789999999999  899999999999999999999988766553

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.89  E-value=7.1e-09  Score=83.05  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=37.6

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~   47 (285)
                      .++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..
T Consensus        12 ~~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~~   53 (180)
T cd03214          12 RTVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPSS   53 (180)
T ss_pred             eeeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            46899999999999  8999999999999999999999875443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.89  E-value=5.6e-09  Score=87.74  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=35.9

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|..
T Consensus        12 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        12 DKEILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             CEEEEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999  899999999999999999999984

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.89  E-value=6.7e-09  Score=84.77  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=37.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      +..+++++++.+.+|  ..++|+|+||+|||||+++|+|...
T Consensus        19 ~~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          19 KIPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCC
Confidence            467899999999999  8999999999999999999999876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.89  E-value=5.5e-09  Score=98.89  Aligned_cols=149  Identities=17%  Similarity=0.084  Sum_probs=84.8

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-c----------ceeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-V----------TSTCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~----------t~~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+.+++|  .+++|+|++|+|||||++.|+|...|..|..... .          ...+.+.++.. .=-.-+
T Consensus       348 ~~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~T  424 (588)
T PRK13657        348 RQGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA-GLFNRS  424 (588)
T ss_pred             CceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc-cccccc
Confidence            46899999999999  8999999999999999999999987766532110 0          01111111111 000011


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      +-|--.+.++..+++.+...+..     .+.....+.|..  +-+.+..+|+++++++..++..+.++   +++++   +
T Consensus       425 i~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~--i~~~g~~LSgGq~QRialARall~~~---~iliLDEpt  499 (588)
T PRK13657        425 IEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTV--VGERGRQLSGGERQRLAIARALLKDP---PILILDEAT  499 (588)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccch--hcCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCc
Confidence            11111111122223333222221     111111123332  22334579999999999999988765   78877   7


Q ss_pred             eCCCCCCCChhcHHHHhh
Q 023214          145 TGGDELEDNDETLEDYLG  162 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~  162 (285)
                      +.+|....  ..+.+.+.
T Consensus       500 s~LD~~t~--~~i~~~l~  515 (588)
T PRK13657        500 SALDVETE--AKVKAALD  515 (588)
T ss_pred             cCCCHHHH--HHHHHHHH
Confidence            77776544  45555444

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.89  E-value=1.1e-08  Score=84.68  Aligned_cols=43  Identities=28%  Similarity=0.305  Sum_probs=38.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        17 ~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G   59 (220)
T cd03245          17 IPALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYKPTSG   59 (220)
T ss_pred             cccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            46899999999999  89999999999999999999999866554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.88  E-value=7.5e-09  Score=87.34  Aligned_cols=137  Identities=16%  Similarity=0.113  Sum_probs=77.9

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|.........+            .++...|.+...
T Consensus        16 ~~~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i------------~~v~q~~~~~~~   81 (251)
T PRK09544         16 QRRVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRI------------GYVPQKLYLDTT   81 (251)
T ss_pred             CceEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCE------------EEeccccccccc
Confidence            456889999999999  899999999999999999999987665543211100111            112222222111


Q ss_pred             C-CCcHH--------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCC
Q 023214           83 S-AGSEF--------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDEL  150 (285)
Q Consensus        83 ~-~~~~~--------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~  150 (285)
                      . .+...        ....+...+...  +...  +.-.....+|.++++.+.+++.+..++   +++++   ++.+|..
T Consensus        82 l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qrv~laral~~~p---~lllLDEPt~~LD~~  154 (251)
T PRK09544         82 LPLTVNRFLRLRPGTKKEDILPALKRV--QAGH--LIDAPMQKLSGGETQRVLLARALLNRP---QLLVLDEPTQGVDVN  154 (251)
T ss_pred             cChhHHHHHhccccccHHHHHHHHHHc--CChH--HHhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCCcCCCHH
Confidence            0 00000        001122222111  1111  011112479999999999998887655   67777   7888865


Q ss_pred             CCChhcHHHHhh
Q 023214          151 EDNDETLEDYLG  162 (285)
Q Consensus       151 ~~~~~~l~~~l~  162 (285)
                      ..  ..+.+.+.
T Consensus       155 ~~--~~l~~~L~  164 (251)
T PRK09544        155 GQ--VALYDLID  164 (251)
T ss_pred             HH--HHHHHHHH
Confidence            54  45555443

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.88  E-value=4.9e-09  Score=100.98  Aligned_cols=152  Identities=15%  Similarity=0.039  Sum_probs=86.4

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+++++|  .+++++|++|+|||||++.|+|...|..|.... +..          ....+.++.. .=-.-+
T Consensus       466 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~gT  542 (686)
T TIGR03797       466 PLILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG-RLMSGS  542 (686)
T ss_pred             ccceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCC-ccCccc
Confidence            56899999999999  899999999999999999999998776654211 100          0111111110 000001


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHH-h-hccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKCI-G-MAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG  146 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk  146 (285)
                      +-|-.-+..+ .+++++..-+..+- . ....-++++=-.+ +.+..+|+++++++..++..+.++   +++++   ++.
T Consensus       543 I~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p---~iLiLDEpTS~  618 (686)
T TIGR03797       543 IFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP---RILLFDEATSA  618 (686)
T ss_pred             HHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccC
Confidence            1111112222 22232222222110 0 0000122221222 335679999999999999998876   78887   888


Q ss_pred             CCCCCCChhcHHHHhhhc
Q 023214          147 GDELEDNDETLEDYLGRE  164 (285)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~  164 (285)
                      +|....  ..+.+.+...
T Consensus       619 LD~~te--~~i~~~L~~~  634 (686)
T TIGR03797       619 LDNRTQ--AIVSESLERL  634 (686)
T ss_pred             CCHHHH--HHHHHHHHHh
Confidence            886655  5666666543

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.88  E-value=9e-09  Score=85.75  Aligned_cols=137  Identities=18%  Similarity=0.155  Sum_probs=77.6

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      ++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.... +....      .. .....++.+.|++... .+
T Consensus         1 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~------~~-~~~~~~v~q~~~l~~~-~t   70 (230)
T TIGR01184         1 LKGVNLTIQQG--EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT------EP-GPDRMVVFQNYSLLPW-LT   70 (230)
T ss_pred             CCceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC------CC-ChhheEEecCcccCCC-CC
Confidence            36789999999  899999999999999999999998765543211 10000      00 0011234445544321 11


Q ss_pred             cHH-H----------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214           86 SEF-V----------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT  145 (285)
Q Consensus        86 ~~~-~----------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n  145 (285)
                      ..+ +                ...+...+.. + +...  +.-.....+|+++++++..++.+...+   +++++   ++
T Consensus        71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEPt~  143 (230)
T TIGR01184        71 VRENIALAVDRVLPDLSKSERRAIVEEHIAL-V-GLTE--AADKRPGQLSGGMKQRVAIARALSIRP---KVLLLDEPFG  143 (230)
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHHH-c-CCHH--HHcCChhhCCHHHHHHHHHHHHHHcCC---CEEEEcCCCc
Confidence            111 0                0111111111 0 1111  011112469999999999999887765   77777   78


Q ss_pred             CCCCCCCChhcHHHHhh
Q 023214          146 GGDELEDNDETLEDYLG  162 (285)
Q Consensus       146 k~D~~~~~~~~l~~~l~  162 (285)
                      .+|....  ..+.+.+.
T Consensus       144 gLD~~~~--~~l~~~l~  158 (230)
T TIGR01184       144 ALDALTR--GNLQEELM  158 (230)
T ss_pred             CCCHHHH--HHHHHHHH
Confidence            8886554  45555443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.88  E-value=1e-08  Score=87.58  Aligned_cols=45  Identities=29%  Similarity=0.381  Sum_probs=39.9

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ++++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        19 ~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   63 (272)
T PRK15056         19 GHTALRDASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRLASGK   63 (272)
T ss_pred             CcEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            356899999999999  899999999999999999999998765553

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.88  E-value=2.1e-09  Score=93.23  Aligned_cols=146  Identities=15%  Similarity=0.119  Sum_probs=83.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +..+++++|+.+++|  ..++|+|+||+|||||+++|+|...+..|.... +.....  ..... ...-.++.+.|.+..
T Consensus        14 ~~~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~--~~~~~-~~~ig~~~q~~~l~~   88 (301)
T TIGR03522        14 TQNALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ--NPKEV-QRNIGYLPEHNPLYL   88 (301)
T ss_pred             CEEEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--ChHHH-HhceEEecCCCCCCC
Confidence            456899999999999  899999999999999999999988766553211 100000  00000 011234455555442


Q ss_pred             CCCCcHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           82 FSAGSEFVGK---------------EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        82 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      . .+..+...               .+...+.. + +....  .-.....+|.+.++++.+++.+++.+   +++++   
T Consensus        89 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-gl~~~--~~~~~~~LS~G~~qrv~la~al~~~p---~lliLDEP  160 (301)
T TIGR03522        89 D-MYVREYLQFIAGIYGMKGQLLKQRVEEMIEL-V-GLRPE--QHKKIGQLSKGYRQRVGLAQALIHDP---KVLILDEP  160 (301)
T ss_pred             C-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-C-CCchH--hcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCC
Confidence            1 11111111               11111111 0 11110  01112468999999999999988876   67777   


Q ss_pred             EeCCCCCCCChhcHHHHhhh
Q 023214          144 FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~~  163 (285)
                      ++.+|....  ..+.+.+..
T Consensus       161 t~gLD~~~~--~~l~~~l~~  178 (301)
T TIGR03522       161 TTGLDPNQL--VEIRNVIKN  178 (301)
T ss_pred             cccCCHHHH--HHHHHHHHH
Confidence            888886555  555555554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.88  E-value=1.7e-08  Score=81.68  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=35.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +++++++|+.+.+|  ..++|+|+||+|||||+++|+|..
T Consensus        20 ~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          20 RQLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             eEeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence            56899999999999  899999999999999999999964

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.88  E-value=3.1e-09  Score=90.15  Aligned_cols=44  Identities=30%  Similarity=0.387  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~G   57 (258)
T PRK13548         14 GRTLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSPDSG   57 (258)
T ss_pred             CeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            456899999999999  89999999999999999999998766554

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.88  E-value=2e-08  Score=89.79  Aligned_cols=89  Identities=20%  Similarity=0.088  Sum_probs=56.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe--------------------eC---CceEEEEeC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------KD---GQVVNVIDT   76 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~liDt   76 (285)
                      .+|+|||.+++|||||+|+|++.......  ..++|..+.......                    ..   ...+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~--y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIAN--YPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccC--CCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            58999999999999999999987643221  123343333322211                    01   245789999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (285)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~  114 (285)
                      ||+.........++..+    ...+..+|++++|+++.
T Consensus        80 aGl~~ga~~g~glg~~f----L~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQF----LDDLRQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHH----HHHHHHCCEEEEEEeCC
Confidence            99975322222233333    33456779999999985

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.88  E-value=1e-08  Score=86.63  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (252)
T TIGR03005        12 ILTVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPIDEG   55 (252)
T ss_pred             CeeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            346889999999999  89999999999999999999998876554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.87  E-value=8.9e-09  Score=90.79  Aligned_cols=148  Identities=13%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEe--eCCceEEEEeCCCCC
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVL--KDGQVVNVIDTPGLF   80 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~--~~~~~~~liDtpG~~   80 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.... +..... ......  ....-.++...|.+.
T Consensus        18 ~~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~-~~~~~~~~~~~~ig~v~q~~~l~   94 (343)
T PRK11153         18 IHALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTA-LSEKELRKARRQIGMIFQHFNLL   94 (343)
T ss_pred             eEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHHHHHhcCEEEEeCCCccC
Confidence            46899999999999  899999999999999999999998765543211 100000 000000  000112233344433


Q ss_pred             CCCCCcH--------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           81 DFSAGSE--------------FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        81 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      ......+              .....+...+.. + +...  +.-.....+|+++++++..++.+..++   +++++   
T Consensus        95 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~-~-gL~~--~~~~~~~~LSgGq~qRv~lAraL~~~p---~iLlLDEP  167 (343)
T PRK11153         95 SSRTVFDNVALPLELAGTPKAEIKARVTELLEL-V-GLSD--KADRYPAQLSGGQKQRVAIARALASNP---KVLLCDEA  167 (343)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CCch--hhhCChhhCCHHHHHHHHHHHHHHcCC---CEEEEeCC
Confidence            2100000              111111111111 1 1111  111112469999999999999887765   67777   


Q ss_pred             EeCCCCCCCChhcHHHHhhh
Q 023214          144 FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~~  163 (285)
                      ++.+|....  ..+.+++..
T Consensus       168 ts~LD~~~~--~~l~~~L~~  185 (343)
T PRK11153        168 TSALDPATT--RSILELLKD  185 (343)
T ss_pred             cccCCHHHH--HHHHHHHHH
Confidence            788886655  555555543

>PLN03073 ABC transporter F family; Provisional

Probab=98.87  E-value=3.3e-09  Score=101.67  Aligned_cols=40  Identities=30%  Similarity=0.318  Sum_probs=36.9

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      |+.++++++|+.+..|  .+++|||+||+|||||++.|+|..
T Consensus       188 ~~~~ll~~isl~i~~G--e~~gLvG~NGsGKSTLLr~l~g~~  227 (718)
T PLN03073        188 GGRDLIVDASVTLAFG--RHYGLVGRNGTGKTTFLRYMAMHA  227 (718)
T ss_pred             CCCEEEECCEEEECCC--CEEEEECCCCCCHHHHHHHHcCCC
Confidence            4567999999999999  899999999999999999999864

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.87  E-value=2.5e-09  Score=87.13  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        13 ~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   56 (200)
T PRK13540         13 DQPLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNPEKG   56 (200)
T ss_pred             CeeEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            456899999999999  89999999999999999999998876554

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.87  E-value=2e-09  Score=91.65  Aligned_cols=44  Identities=14%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        19 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   62 (265)
T PRK10253         19 KYTVAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTPAHG   62 (265)
T ss_pred             CEEEeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            346899999999999  89999999999999999999998866554

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.87  E-value=7.2e-09  Score=88.32  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=39.8

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        26 ~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~   69 (267)
T PRK15112         26 VEAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEPTSGE   69 (267)
T ss_pred             cceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCCE
Confidence            46899999999999  899999999999999999999998766653

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.86  E-value=5.1e-09  Score=98.68  Aligned_cols=149  Identities=14%  Similarity=0.086  Sum_probs=89.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceE
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVV   71 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~   71 (285)
                      +.++++++|+.+++|  .++++||++|+||||++|.|++-..+..|.... +..          ....+.++.. .=-.-
T Consensus       341 ~~~vl~~is~~i~~G--e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~-~LF~~  417 (567)
T COG1132         341 KKPVLKDISFSIEPG--EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP-LLFSG  417 (567)
T ss_pred             CCccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccc-eeecc
Confidence            357899999999999  899999999999999999999988764443211 100          0000111000 00001


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHH-----HhhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214           72 NVIDTPGLFDFSAGSEFVGKEIVKC-----IGMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--  143 (285)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--  143 (285)
                      ++-|--.++.+..+++++.+....+     +.. +  |++.--++ ..+..+|+++++++...+..+.++   |++++  
T Consensus       418 TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~-l--p~g~dt~vge~G~~LSgGQrQrlaiARall~~~---~ILILDE  491 (567)
T COG1132         418 TIRENIALGRPDATDEEIEEALKLANAHEFIAN-L--PDGYDTIVGERGVNLSGGQRQRLAIARALLRNP---PILILDE  491 (567)
T ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh-C--cccccceecCCCccCCHHHHHHHHHHHHHhcCC---CEEEEec
Confidence            1222222233323344444433322     111 1  22332333 345689999999999999998766   88888  


Q ss_pred             -EeCCCCCCCChhcHHHHhh
Q 023214          144 -FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 -~nk~D~~~~~~~~l~~~l~  162 (285)
                       ++..|..+.  ..+.+.+.
T Consensus       492 aTSalD~~tE--~~I~~~l~  509 (567)
T COG1132         492 ATSALDTETE--ALIQDALK  509 (567)
T ss_pred             cccccCHHhH--HHHHHHHH
Confidence             888887665  55666554

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.86  E-value=3.3e-09  Score=89.00  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        13 ~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (240)
T PRK09493         13 PTQVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEITSG   56 (240)
T ss_pred             CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            356899999999999  89999999999999999999998766554

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.86  E-value=9.4e-09  Score=93.80  Aligned_cols=42  Identities=24%  Similarity=0.312  Sum_probs=38.1

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        38 ~IL~nVSfsI~~G--EivgIiGpNGSGKSTLLkiLaGLl~P~sG   79 (549)
T PRK13545         38 YALNNISFEVPEG--EIVGIIGLNGSGKSTLSNLIAGVTMPNKG   79 (549)
T ss_pred             eEEeeeEEEEeCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence            5789999999999  89999999999999999999998866554

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.86  E-value=1.2e-08  Score=90.04  Aligned_cols=145  Identities=14%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +..+++++++.+..|  ..++|+|+||+|||||+++|+|...+.+|.... +....    ........-..+.+.+.++.
T Consensus        18 ~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~----~~~~~~r~ig~vfQ~~~lfp   91 (351)
T PRK11432         18 SNTVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT----HRSIQQRDICMVFQSYALFP   91 (351)
T ss_pred             CeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC----CCCHHHCCEEEEeCCcccCC
Confidence            345788999999999  899999999999999999999998876653211 10000    00000011123444444432


Q ss_pred             CCCC--------------cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           82 FSAG--------------SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        82 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      ....              .......+...+...  +...+  .-.....+|+++++++.+.+.+...+   .++++   +
T Consensus        92 ~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~--gl~~~--~~r~~~~LSgGq~QRVaLARaL~~~P---~lLLLDEP~  164 (351)
T PRK11432         92 HMSLGENVGYGLKMLGVPKEERKQRVKEALELV--DLAGF--EDRYVDQISGGQQQRVALARALILKP---KVLLFDEPL  164 (351)
T ss_pred             CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc--CCchh--hcCChhhCCHHHHHHHHHHHHHHcCC---CEEEEcCCc
Confidence            1100              111111222222111  11111  11112479999999999999987765   67776   7


Q ss_pred             eCCCCCCCChhcHHHHhh
Q 023214          145 TGGDELEDNDETLEDYLG  162 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~  162 (285)
                      +.+|....  ..+.+.+.
T Consensus       165 s~LD~~~r--~~l~~~l~  180 (351)
T PRK11432        165 SNLDANLR--RSMREKIR  180 (351)
T ss_pred             ccCCHHHH--HHHHHHHH
Confidence            77775544  44444443

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.86  E-value=1.5e-08  Score=85.46  Aligned_cols=42  Identities=24%  Similarity=0.299  Sum_probs=38.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.
T Consensus        13 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~   54 (247)
T TIGR00972        13 EKEALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMNDLV   54 (247)
T ss_pred             CeeeecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            456889999999999  899999999999999999999988654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.86  E-value=1.1e-08  Score=95.04  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|.... +..... ..........-.++...|.+..
T Consensus        23 ~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~~~i~~v~q~~~~~~   99 (510)
T PRK15439         23 GVEVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR-LTPAKAHQLGIYLVPQEPLLFP   99 (510)
T ss_pred             CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC-CCHHHHHhCCEEEEeccCccCC
Confidence            456889999999999  899999999999999999999988665543211 100000 0000000000112233332221


Q ss_pred             CCCC----------cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCC
Q 023214           82 FSAG----------SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGD  148 (285)
Q Consensus        82 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D  148 (285)
                      ....          .......+...+...  +.+..  .-..-..+|+++++++.+++.+...+   +++++   ++.+|
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LSgG~~qrv~la~aL~~~p---~lllLDEPt~~LD  172 (510)
T PRK15439        100 NLSVKENILFGLPKRQASMQKMKQLLAAL--GCQLD--LDSSAGSLEVADRQIVEILRGLMRDS---RILILDEPTASLT  172 (510)
T ss_pred             CCcHHHHhhcccccchHHHHHHHHHHHHc--CCCcc--ccCChhhCCHHHHHHHHHHHHHHcCC---CEEEEECCCCCCC
Confidence            1000          011112222222211  11111  11112478999999999988887655   67777   88888


Q ss_pred             CCCCChhcHHHHhh
Q 023214          149 ELEDNDETLEDYLG  162 (285)
Q Consensus       149 ~~~~~~~~l~~~l~  162 (285)
                      ....  ..+.+++.
T Consensus       173 ~~~~--~~l~~~l~  184 (510)
T PRK15439        173 PAET--ERLFSRIR  184 (510)
T ss_pred             HHHH--HHHHHHHH
Confidence            6655  55555554

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.86  E-value=6.9e-09  Score=82.23  Aligned_cols=55  Identities=36%  Similarity=0.469  Sum_probs=41.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (285)
                      .+++++|.+++|||||+|+|+|......+.. .|+|...+...  .  +..+.++||||+
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~--~--~~~~~l~DtPGi  172 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH--L--DKKVKLLDSPGI  172 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE--e--CCCEEEEECcCC
Confidence            6999999999999999999999887555443 45565543332  2  456899999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.86  E-value=1.9e-08  Score=83.39  Aligned_cols=141  Identities=19%  Similarity=0.187  Sum_probs=79.9

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|.... +.....  .   . ...-.++.+.|.+..
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~--~---~-~~~~~~~~q~~~~~~   83 (223)
T TIGR03740        12 KQTAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR--K---D-LHKIGSLIESPPLYE   83 (223)
T ss_pred             CEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc--c---c-cccEEEEcCCCCccc
Confidence            356889999999999  899999999999999999999987665543211 000000  0   0 001122333343332


Q ss_pred             CCCCcHHHHH-----------HHHHHHhhccCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214           82 FSAGSEFVGK-----------EIVKCIGMAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG  146 (285)
Q Consensus        82 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk  146 (285)
                      . .+..+...           .+...+.. + +.+.   ..+. ...+|.++++.+.+++.+...+   +++++   ++.
T Consensus        84 ~-~t~~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~---~~~~~~~~LS~G~~~rv~laral~~~p---~llllDEP~~~  154 (223)
T TIGR03740        84 N-LTARENLKVHTTLLGLPDSRIDEVLNI-V-DLTN---TGKKKAKQFSLGMKQRLGIAIALLNHP---KLLILDEPTNG  154 (223)
T ss_pred             c-CCHHHHHHHHHHHcCCCHHHHHHHHHH-c-CCcH---HHhhhHhhCCHHHHHHHHHHHHHhcCC---CEEEECCCccC
Confidence            1 11111100           11111110 0 1111   1111 2368999999999999887765   67777   788


Q ss_pred             CCCCCCChhcHHHHhh
Q 023214          147 GDELEDNDETLEDYLG  162 (285)
Q Consensus       147 ~D~~~~~~~~l~~~l~  162 (285)
                      +|....  ..+.+.+.
T Consensus       155 LD~~~~--~~l~~~L~  168 (223)
T TIGR03740       155 LDPIGI--QELRELIR  168 (223)
T ss_pred             CCHHHH--HHHHHHHH
Confidence            886655  55555554

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.86  E-value=7.9e-09  Score=97.75  Aligned_cols=146  Identities=16%  Similarity=0.185  Sum_probs=85.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+.+++|  .+++|+|+||+|||||++.|+|...|..|.... +..          ....+.++.     ...
T Consensus       356 ~~il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~-----~~l  428 (582)
T PRK11176        356 VPALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQN-----VHL  428 (582)
T ss_pred             CccccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccC-----cee
Confidence            56899999999999  899999999999999999999998776653211 100          011111111     111


Q ss_pred             EEeCC----CCCCCC-CCcHHHHHHHHHH-----HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEE
Q 023214           73 VIDTP----GLFDFS-AGSEFVGKEIVKC-----IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        73 liDtp----G~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      +-+|.    .+..+. .+++.+..-+..+     +.....+.|..  +-+.+..+|+++++++..++..+.++   ++++
T Consensus       429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~--ig~~g~~LSGGqrQRi~LARall~~~---~ili  503 (582)
T PRK11176        429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV--IGENGVLLSGGQRQRIAIARALLRDS---PILI  503 (582)
T ss_pred             ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCce--eCCCCCcCCHHHHHHHHHHHHHHhCC---CEEE
Confidence            11111    111111 1233332222211     11111122322  22334579999999999999998766   7888


Q ss_pred             E---EeCCCCCCCChhcHHHHhhh
Q 023214          143 V---FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       143 l---~nk~D~~~~~~~~l~~~l~~  163 (285)
                      +   ++.+|....  ..+.+.+..
T Consensus       504 lDEptsaLD~~t~--~~i~~~l~~  525 (582)
T PRK11176        504 LDEATSALDTESE--RAIQAALDE  525 (582)
T ss_pred             EECccccCCHHHH--HHHHHHHHH
Confidence            7   888887655  555555543

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.85  E-value=1.9e-09  Score=89.88  Aligned_cols=44  Identities=27%  Similarity=0.381  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (230)
T TIGR03410        12 QSHILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPVKSG   55 (230)
T ss_pred             CeEEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            356899999999999  89999999999999999999999876554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.85  E-value=4.3e-09  Score=99.25  Aligned_cols=150  Identities=15%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-cce----------eEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTS----------TCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~t~----------~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+.+++|  .+++|+|+||+|||||++.|+|...+..|....+ ...          ...+.++.. .=-.-+
T Consensus       353 ~~il~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~t  429 (574)
T PRK11160        353 QPVLKGLSLQIKAG--EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV-HLFSAT  429 (574)
T ss_pred             CcceecceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccc-hhhccc
Confidence            46899999999999  8999999999999999999999987766542211 100          011111100 000011


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHH--hhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKCI--GMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG  146 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk  146 (285)
                      +-|...+..+..+++.+..-+..+-  ..... +++.=-.+ +.+..+|+++++++...+..+.++   +++++   ++.
T Consensus       430 i~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~---~ililDE~ts~  505 (574)
T PRK11160        430 LRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA---PLLLLDEPTEG  505 (574)
T ss_pred             HHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccc
Confidence            1111122222122233222222110  00111 23322222 234579999999999999998766   77877   777


Q ss_pred             CCCCCCChhcHHHHhh
Q 023214          147 GDELEDNDETLEDYLG  162 (285)
Q Consensus       147 ~D~~~~~~~~l~~~l~  162 (285)
                      +|....  ..+.+.+.
T Consensus       506 lD~~t~--~~i~~~l~  519 (574)
T PRK11160        506 LDAETE--RQILELLA  519 (574)
T ss_pred             CCHHHH--HHHHHHHH
Confidence            776554  55555554

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=1.9e-09  Score=91.24  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=39.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (255)
T PRK11231         14 TKRILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLTPQSG   57 (255)
T ss_pred             CEEEEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            456899999999999  89999999999999999999998766554

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.85  E-value=4.6e-09  Score=87.45  Aligned_cols=44  Identities=23%  Similarity=0.278  Sum_probs=39.4

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ..+++++++.++.|  ..++|+|+||+|||||+++|+|...+..|.
T Consensus        16 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   59 (229)
T cd03254          16 KPVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDPQKGQ   59 (229)
T ss_pred             CccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            46899999999999  899999999999999999999998766553

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.85  E-value=1.4e-08  Score=83.38  Aligned_cols=38  Identities=32%  Similarity=0.412  Sum_probs=34.7

Q ss_pred             CccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++|+++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        16 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~~~G   53 (211)
T cd03298          16 HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETPQSG   53 (211)
T ss_pred             ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            789999999  89999999999999999999999876554

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=1.9e-08  Score=78.27  Aligned_cols=118  Identities=14%  Similarity=0.090  Sum_probs=77.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .....+|+++|-.+|||||++..+--.....     ..+|+.+....+.+ .+..++++|.-|....+           .
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-----tvPTiGfnVE~v~y-kn~~f~vWDvGGq~k~R-----------~   76 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TVPTIGFNVETVEY-KNISFTVWDVGGQEKLR-----------P   76 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCccc-----CCCccccceeEEEE-cceEEEEEecCCCcccc-----------c
Confidence            3345899999999999999987765333322     24466666677777 68899999999975322           1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~~  152 (285)
                      ....+++..++++||+|.+++..-.+.  -+.+..++..+  ...|++++.||.|....
T Consensus        77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~ea--k~eL~~~l~~~~l~~~~llv~aNKqD~~~a  133 (181)
T KOG0070|consen   77 LWKHYFQNTQGLIFVVDSSDRERIEEA--KEELHRMLAEPELRNAPLLVFANKQDLPGA  133 (181)
T ss_pred             chhhhccCCcEEEEEEeCCcHHHHHHH--HHHHHHHHcCcccCCceEEEEechhhcccc
Confidence            234568889999999998744333221  11122222221  23488899999997755

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.85  E-value=6.9e-09  Score=86.28  Aligned_cols=42  Identities=33%  Similarity=0.388  Sum_probs=38.6

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++|+.+++|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   60 (228)
T cd03257          19 KALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKPTSG   60 (228)
T ss_pred             eeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            6899999999999  89999999999999999999998876554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.85  E-value=1.7e-08  Score=85.51  Aligned_cols=44  Identities=16%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   60 (257)
T PRK10619         17 EHEVLKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKPSEG   60 (257)
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            356889999999999  89999999999999999999999876554

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=1.2e-08  Score=90.23  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+.+..|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        16 ~~~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p~~G   59 (356)
T PRK11650         16 KTQVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERITSG   59 (356)
T ss_pred             CCEEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence            356788999999999  89999999999999999999999876655

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.85  E-value=5.1e-09  Score=90.56  Aligned_cols=123  Identities=17%  Similarity=0.073  Sum_probs=72.1

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---------CcceeEEEEEEEeeCCceEEEEeC
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---------GVTSTCEMQRTVLKDGQVVNVIDT   76 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~---------~~t~~~~~~~~~~~~~~~~~liDt   76 (285)
                      +.+++|+.+..|  .-++|+||||||||||+++|+|-..+++|....         +......+..+.+.--+.+++.|.
T Consensus        18 ~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N   95 (338)
T COG3839          18 VLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN   95 (338)
T ss_pred             eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence            678899999999  899999999999999999999999877764321         111222333333322344555555


Q ss_pred             CCCCCCC--CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Q 023214           77 PGLFDFS--AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK  134 (285)
Q Consensus        77 pG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~  134 (285)
                      -+|.-..  ....++.+.+.......  +.+..+--. + ..+|++.++++.+.+.+...
T Consensus        96 iaf~Lk~~~~~k~ei~~rV~eva~~L--~l~~lL~r~-P-~~LSGGQrQRVAlaRAlVr~  151 (338)
T COG3839          96 IAFGLKLRGVPKAEIDKRVKEVAKLL--GLEHLLNRK-P-LQLSGGQRQRVALARALVRK  151 (338)
T ss_pred             hhhhhhhCCCchHHHHHHHHHHHHHc--CChhHHhcC-c-ccCChhhHHHHHHHHHHhcC
Confidence            5554211  11223333333333211  122211111 1 35777788888777777655

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.84  E-value=1e-08  Score=78.81  Aligned_cols=56  Identities=29%  Similarity=0.479  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (285)
                      .+++++|.+|+|||||+|+|++...+.. ....+.|.....  ...  +..+.++||||+.
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~i~DtpG~~  139 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQT--IFL--TPTITLCDCPGLV  139 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEE--EEe--CCCEEEEECCCcC
Confidence            3899999999999999999999876432 223344544332  222  3368999999986

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.84  E-value=1.1e-08  Score=97.36  Aligned_cols=148  Identities=17%  Similarity=0.113  Sum_probs=87.3

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-----------cceeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-----------VTSTCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~   72 (285)
                      +++.+|+|+.+++|  .+|+++|++|||||||++.|+|-..|..|.....           ......+..++. -=..-+
T Consensus       486 ~~vL~~isL~I~~G--e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~-~Lf~gS  562 (709)
T COG2274         486 PPVLEDLSLEIPPG--EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP-FLFSGS  562 (709)
T ss_pred             cchhhceeEEeCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccc-hhhcCc
Confidence            46889999999999  8999999999999999999999988766542110           000111111100 000011


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhc------cCCccEEEE-EEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKCIGMA------KDGIHAVLV-VFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--  143 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--  143 (285)
                      +-|---+.++..+.++    +..++..+      ..-|.+.-. |-..+..+|++.++++..++....++   +++++  
T Consensus       563 I~eNi~l~~p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---~ILlLDE  635 (709)
T COG2274         563 IRENIALGNPEATDEE----IIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---KILLLDE  635 (709)
T ss_pred             HHHHHhcCCCCCCHHH----HHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---CEEEEeC
Confidence            2222222233233232    22222211      111222222 33456689999999999999998876   77777  


Q ss_pred             -EeCCCCCCCChhcHHHHhhh
Q 023214          144 -FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 -~nk~D~~~~~~~~l~~~l~~  163 (285)
                       ++.+|..+.  ..+.+.+..
T Consensus       636 aTSaLD~~sE--~~I~~~L~~  654 (709)
T COG2274         636 ATSALDPETE--AIILQNLLQ  654 (709)
T ss_pred             cccccCHhHH--HHHHHHHHH
Confidence             888886655  455555543

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=98.84  E-value=2.5e-08  Score=75.71  Aligned_cols=120  Identities=17%  Similarity=0.083  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .|+.+||.+-+|||+|++.++....+.  .+.+.+.+..-..-++...|  .++.++||.|...           ++...
T Consensus         9 frlivigdstvgkssll~~ft~gkfae--lsdptvgvdffarlie~~pg~riklqlwdtagqer-----------frsit   75 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGKFAE--LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQER-----------FRSIT   75 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCcccc--cCCCccchHHHHHHHhcCCCcEEEEEEeeccchHH-----------HHHHH
Confidence            699999999999999999998655322  22222222211122233223  4588999999643           34444


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++|+..-++++|+|.+++-+-+. ..|+.......+.+...-+++|.+|.|+.+.
T Consensus        76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq  131 (213)
T KOG0091|consen   76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ  131 (213)
T ss_pred             HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence            566777789999999987877665 4666667666664443345566899998754

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.84  E-value=1.2e-08  Score=84.89  Aligned_cols=39  Identities=23%  Similarity=0.254  Sum_probs=36.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|..
T Consensus        12 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          12 DKHALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence            356899999999999  899999999999999999999987

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.84  E-value=5.4e-09  Score=87.44  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=39.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   56 (236)
T cd03253          14 RPVLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDVSSG   56 (236)
T ss_pred             CceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            46899999999999  89999999999999999999998876554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.84  E-value=1.6e-08  Score=86.05  Aligned_cols=42  Identities=21%  Similarity=0.202  Sum_probs=38.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+.
T Consensus        16 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~   57 (262)
T PRK09984         16 QHQALHAVDLNIHHG--EMVALLGPSGSGKSTLLRHLSGLITGD   57 (262)
T ss_pred             CeEEEecceEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            456889999999999  899999999999999999999987653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=3.8e-09  Score=90.20  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=39.2

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        22 ~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   64 (271)
T PRK13632         22 NNALKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKPQSG   64 (271)
T ss_pred             ccceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            57899999999999  89999999999999999999999876554

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.83  E-value=4.2e-08  Score=88.62  Aligned_cols=119  Identities=18%  Similarity=0.239  Sum_probs=82.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .||+|+|.-|+|||||+-+++....++.-+... .++..    .-..+.....+++||+.-.+   +..        ++.
T Consensus        10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~---~~~--------~l~   74 (625)
T KOG1707|consen   10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSD---DRL--------CLR   74 (625)
T ss_pred             eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccc---hhH--------HHH
Confidence            799999999999999999999888654322211 11211    11122344588999984332   111        222


Q ss_pred             hccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      .....+|++.+|+..++  .++.-...||-+++..+|+....|+|+|.||.|.....
T Consensus        75 ~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~  131 (625)
T KOG1707|consen   75 KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE  131 (625)
T ss_pred             HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence            33456789999987753  35666679999999999887778999999999988663

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=6.6e-08  Score=71.58  Aligned_cols=125  Identities=14%  Similarity=0.178  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+..++|..|+|||.|+..++.....  ...+..+.+......++.++ ..++.+|||.|..           .++....
T Consensus        12 fkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtagqe-----------rfravtr   78 (215)
T KOG0097|consen   12 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE-----------RFRAVTR   78 (215)
T ss_pred             EEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeecccHH-----------HHHHHHH
Confidence            68899999999999999998866642  22333444455555566622 2458899999954           3445556


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHH
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED  159 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~  159 (285)
                      ++++++.+.++|+|+..+-+-.. ..|+.-.+.+-.+..  -++++.||.|+........++
T Consensus        79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt--~i~lignkadle~qrdv~yee  138 (215)
T KOG0097|consen   79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIFLIGNKADLESQRDVTYEE  138 (215)
T ss_pred             HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCce--EEEEecchhhhhhcccCcHHH
Confidence            67899999999999974544443 345555555433322  344558999976443234333

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.83  E-value=3.9e-09  Score=89.40  Aligned_cols=44  Identities=27%  Similarity=0.353  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        13 ~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   56 (256)
T TIGR03873        13 GRLIVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRPDAG   56 (256)
T ss_pred             CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            456899999999999  89999999999999999999998766554

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.83  E-value=2.1e-08  Score=88.70  Aligned_cols=149  Identities=16%  Similarity=0.174  Sum_probs=84.2

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEe---eCCceEEEEeCC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVL---KDGQVVNVIDTP   77 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~---~~~~~~~liDtp   77 (285)
                      |+..+++++||++..|  ..++|+|+||+|||||+++|+|...+.+|.... +..... ......   ....-.++++.|
T Consensus         4 ~~~~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~-~~~~~~~~~rr~~i~~v~Q~~   80 (363)
T TIGR01186         4 GGKKGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-QSPVELREVRRKKIGMVFQQF   80 (363)
T ss_pred             CCceeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHHHHHHhCcEEEEECCC
Confidence            4567889999999999  899999999999999999999998776553211 100000 000000   001123455566


Q ss_pred             CCCCCCCCcHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214           78 GLFDFSAGSEFV--------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (285)
Q Consensus        78 G~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil  143 (285)
                      +++......+.+              ...+...+..  -+.+.  +.-.....+|++.++++..++.+..++   +++++
T Consensus        81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~--vgL~~--~~~~~p~~LSGGq~QRV~lARAL~~~p---~iLLl  153 (363)
T TIGR01186        81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL--VGLEE--YEHRYPDELSGGMQQRVGLARALAAEP---DILLM  153 (363)
T ss_pred             cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cCCch--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEE
Confidence            665321111111              1111111111  11111  111112469999999999999887665   67777


Q ss_pred             ---EeCCCCCCCChhcHHHHhh
Q 023214          144 ---FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 ---~nk~D~~~~~~~~l~~~l~  162 (285)
                         ++.+|-...  ..+.+.+.
T Consensus       154 DEP~saLD~~~r--~~l~~~l~  173 (363)
T TIGR01186       154 DEAFSALDPLIR--DSMQDELK  173 (363)
T ss_pred             eCCcccCCHHHH--HHHHHHHH
Confidence               777776554  45555443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.83  E-value=7.5e-09  Score=86.69  Aligned_cols=43  Identities=33%  Similarity=0.316  Sum_probs=38.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+++|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        16 ~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   58 (238)
T cd03249          16 VPILKGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDPTSG   58 (238)
T ss_pred             ccceeceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence            35899999999999  89999999999999999999999876655

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.83  E-value=3.6e-08  Score=85.59  Aligned_cols=87  Identities=20%  Similarity=0.090  Sum_probs=53.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe---------------------e--CCceEEEEeCCC
Q 023214           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---------------------K--DGQVVNVIDTPG   78 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------------------~--~~~~~~liDtpG   78 (285)
                      |++||.+++|||||+|+|++........  ..+|..+......+                     .  ....+.++||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~--pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANY--PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCC--CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            5899999999999999999876422211  12333333222211                     0  124689999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (285)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~  114 (285)
                      +......    ...+...+...+..+|++++|+|+.
T Consensus        79 lv~ga~~----~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHE----GKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCCCccc----hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            9642211    2223333334456779999999985

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=4.5e-09  Score=89.68  Aligned_cols=42  Identities=26%  Similarity=0.385  Sum_probs=38.2

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        23 ~~l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G   64 (269)
T PRK13648         23 FTLKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKVKSG   64 (269)
T ss_pred             cceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4789999999999  89999999999999999999999866554

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.82  E-value=7.8e-09  Score=95.97  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=40.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++++.+..|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        16 ~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~   60 (501)
T PRK10762         16 GVKALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTRDAGS   60 (501)
T ss_pred             CeEEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            456899999999999  899999999999999999999998766553

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=3.5e-09  Score=95.08  Aligned_cols=146  Identities=14%  Similarity=0.080  Sum_probs=84.6

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC----------CCcceeEEEEEEEeeCCceEEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----------SGVTSTCEMQRTVLKDGQVVNV   73 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~l   73 (285)
                      +++.+++|++++.|  .+|+++|+||+||||++|+|+.-........-          .+.-....+.++.     ...+
T Consensus       365 ~~iL~gvsf~I~kG--ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd-----~~LF  437 (591)
T KOG0057|consen  365 RKVLKGVSFTIPKG--EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQD-----SVLF  437 (591)
T ss_pred             CceecceeEEecCC--CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCc-----cccc
Confidence            45899999999999  89999999999999999999965442211100          0111111122221     1222


Q ss_pred             Ee----CCCCCCCCCCcHHHHHHHHHHHh--hccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           74 ID----TPGLFDFSAGSEFVGKEIVKCIG--MAKDGIHAV-LVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        74 iD----tpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      -|    ...++.+..+.+.+.+...++-.  ....-+++. -.|-.-+..+|+++++++.+++..+.++   |++++   
T Consensus       438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda---~Il~~DEa  514 (591)
T KOG0057|consen  438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEA  514 (591)
T ss_pred             chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC---CeEEecCc
Confidence            22    23445555555544333222210  000012221 1122224569999999999999988766   78887   


Q ss_pred             EeCCCCCCCChhcHHHHh
Q 023214          144 FTGGDELEDNDETLEDYL  161 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l  161 (285)
                      +++.|..+.  ..+-+.+
T Consensus       515 TS~LD~~TE--~~i~~~i  530 (591)
T KOG0057|consen  515 TSALDSETE--REILDMI  530 (591)
T ss_pred             ccccchhhH--HHHHHHH
Confidence            888886654  4444443

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.82  E-value=1.4e-08  Score=82.33  Aligned_cols=42  Identities=24%  Similarity=0.183  Sum_probs=36.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+++ +++.+++|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~l~~-vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (195)
T PRK13541         14 KNLFD-LSITFLPS--AITYIKGANGCGKSSLLRMIAGIMQPSSG   55 (195)
T ss_pred             cEEEE-EEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            44565 89999999  89999999999999999999998766554

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.82  E-value=9.2e-09  Score=97.46  Aligned_cols=149  Identities=19%  Similarity=0.235  Sum_probs=84.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      .++++++|+++++|  .+|+|+|++|+|||||++.|+|...|..|.... +.... .+....+ ...-..+...|-+++.
T Consensus       354 ~~il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~-~~~~~~l-~~~i~~v~Q~~~lF~~  429 (592)
T PRK10790        354 NLVLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS-SLSHSVL-RQGVAMVQQDPVVLAD  429 (592)
T ss_pred             CceeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh-hCCHHHH-HhheEEEccCCccccc
Confidence            46899999999999  899999999999999999999998776543211 00000 0000000 0000111222222211


Q ss_pred             ----------CCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           83 ----------SAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        83 ----------~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                                ..+++.+.+-+..     ++.....+.|..  +-..+..+|+++++++..++..+.++   +++++   +
T Consensus       430 Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~--i~e~g~~LSGGqrQRialARaLl~~~---~illlDEpt  504 (592)
T PRK10790        430 TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTP--LGEQGNNLSVGQKQLLALARVLVQTP---QILILDEAT  504 (592)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccc--ccCCCCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCc
Confidence                      1122222221111     111111122332  22335579999999999999998765   78887   7


Q ss_pred             eCCCCCCCChhcHHHHhhh
Q 023214          145 TGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~~  163 (285)
                      +.+|....  ..+.+.+.+
T Consensus       505 s~LD~~t~--~~i~~~l~~  521 (592)
T PRK10790        505 ANIDSGTE--QAIQQALAA  521 (592)
T ss_pred             ccCCHHHH--HHHHHHHHH
Confidence            77886554  555555543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.82  E-value=1.9e-08  Score=82.77  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=36.7

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .+.++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        13 ~~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (213)
T TIGR01277        13 LPMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEPASG   53 (213)
T ss_pred             cceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            356889999999  89999999999999999999999876655

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.82  E-value=1.6e-08  Score=88.89  Aligned_cols=62  Identities=27%  Similarity=0.411  Sum_probs=43.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      ..++|+|.+|+|||||+|+|++.....++....      .+|+....+....  +  ..|+||||+..+..+
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~--~--~~liDTPGir~~~l~  273 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH--G--GDLIDSPGVREFGLW  273 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC--C--CEEEECCCCCcccCC
Confidence            468999999999999999999987765543322      2455544444422  2  359999999876543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.82  E-value=1.2e-08  Score=85.09  Aligned_cols=44  Identities=25%  Similarity=0.221  Sum_probs=39.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~~~G   55 (232)
T cd03300          12 GFVALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETPTSG   55 (232)
T ss_pred             CeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            457899999999999  89999999999999999999999876554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.81  E-value=1.4e-08  Score=85.07  Aligned_cols=43  Identities=28%  Similarity=0.294  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        15 ~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (237)
T cd03252          15 PVILDNISLRIKPG--EVVGIVGRSGSGKSTLTKLIQRFYVPENG   57 (237)
T ss_pred             ccceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            46899999999999  89999999999999999999999876654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.81  E-value=2.3e-08  Score=76.86  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=40.6

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ++.++.+++|+.+.+|  ..|+++||+|+|||||++.++.-..+.+|.
T Consensus        14 ~~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp~~G~   59 (223)
T COG4619          14 GDAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISPTSGT   59 (223)
T ss_pred             CCCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCCCCce
Confidence            4678899999999999  899999999999999999999877666543

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.81  E-value=9e-09  Score=87.01  Aligned_cols=61  Identities=28%  Similarity=0.335  Sum_probs=43.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      ...+++|.+|+|||||+|.|++.....++.      ....+|+....++..    ..-.|+||||+..+..
T Consensus       165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~l  231 (301)
T COG1162         165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLGL  231 (301)
T ss_pred             CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccCc
Confidence            689999999999999999999866543332      122445555554443    2347899999987654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.81  E-value=1.2e-08  Score=96.35  Aligned_cols=149  Identities=17%  Similarity=0.088  Sum_probs=84.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+.+++|  .+++++|+||+|||||++.|+|...+..|.... +..          ..+.+.++.. .--+-+
T Consensus       353 ~~iL~~inl~i~~G--e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~-~lf~~T  429 (576)
T TIGR02204       353 QPALDGLNLTVRPG--ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDP-VLFAAS  429 (576)
T ss_pred             CccccceeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCC-cccccc
Confidence            46889999999999  899999999999999999999988766543211 000          0111111110 000001


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHH----HhhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKC----IGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      +-|--.++++..+++.+...+..+    +...+| +.+.  .+-+.+..+|+++++++..++..+.++   +++++   +
T Consensus       430 i~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t--~i~~~g~~LSgGq~Qrl~laRal~~~~---~ililDEpt  504 (576)
T TIGR02204       430 VMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDT--YLGERGVTLSGGQRQRIAIARAILKDA---PILLLDEAT  504 (576)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCc--eeCCCCCcCCHHHHHHHHHHHHHHhCC---CeEEEeCcc
Confidence            111111111112222222222111    011122 2222  123345579999999999999988765   77877   8


Q ss_pred             eCCCCCCCChhcHHHHhh
Q 023214          145 TGGDELEDNDETLEDYLG  162 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~  162 (285)
                      +..|....  ..+.+.+.
T Consensus       505 s~lD~~~~--~~i~~~l~  520 (576)
T TIGR02204       505 SALDAESE--QLVQQALE  520 (576)
T ss_pred             cccCHHHH--HHHHHHHH
Confidence            88886654  44555444

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.81  E-value=1.6e-08  Score=82.12  Aligned_cols=46  Identities=28%  Similarity=0.390  Sum_probs=42.6

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |++.+++++++.+++|  ...+++|++|+|||||+++|+|...|..|.
T Consensus        19 G~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~Ge   64 (263)
T COG1127          19 GDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKGE   64 (263)
T ss_pred             CCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCCe
Confidence            6788999999999999  899999999999999999999999887764

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.81  E-value=6.7e-09  Score=86.19  Aligned_cols=42  Identities=26%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++|+++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        22 ~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   63 (224)
T TIGR02324        22 PVLKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLPDSG   63 (224)
T ss_pred             EEEecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            6899999999999  89999999999999999999998766554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.81  E-value=3.3e-08  Score=81.01  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        14 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (207)
T PRK13539         14 GRVLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPPAAG   57 (207)
T ss_pred             CeEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            345789999999999  89999999999999999999998766554

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.81  E-value=2.1e-08  Score=85.06  Aligned_cols=41  Identities=17%  Similarity=0.217  Sum_probs=37.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+
T Consensus        16 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~laGl~~~   56 (258)
T PRK14241         16 SFHAVEDVNLNIEPR--SVTAFIGPSGCGKSTVLRTLNRMHEV   56 (258)
T ss_pred             CEeeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCc
Confidence            456899999999999  89999999999999999999998753

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.81  E-value=1.3e-08  Score=85.00  Aligned_cols=42  Identities=36%  Similarity=0.389  Sum_probs=38.6

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (234)
T cd03251          16 PVLRDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDVDSG   57 (234)
T ss_pred             cceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence            6899999999999  89999999999999999999999876555

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.81  E-value=6.9e-09  Score=100.27  Aligned_cols=153  Identities=14%  Similarity=0.084  Sum_probs=85.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceE
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVV   71 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~   71 (285)
                      ++++++++|+.+++|  .+|+|+|++|+|||||++.|+|...|..|.... +..          ..+.+.++.. .=-.-
T Consensus       486 ~~~iL~~isl~i~~G--~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~g  562 (708)
T TIGR01193       486 GSNILSDISLTIKMN--SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP-YIFSG  562 (708)
T ss_pred             CCcceeceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCc-eehhH
Confidence            357899999999999  899999999999999999999988766553211 100          0111111110 00000


Q ss_pred             EEEeCCCCC-CCCCCcHHHHHHHHHHH--hhccCCccEEEE-EEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           72 NVIDTPGLF-DFSAGSEFVGKEIVKCI--GMAKDGIHAVLV-VFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        72 ~liDtpG~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      ++-|-.-+. ++..+++.+.+-+..+-  .....-+++.=- +-+.+..+|+++++++..++..+.++   +++++   +
T Consensus       563 TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p---~iliLDE~T  639 (708)
T TIGR01193       563 SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS---KVLILDEST  639 (708)
T ss_pred             HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCcc
Confidence            111111111 11122222222221110  000011222212 23345679999999999999988766   78887   7


Q ss_pred             eCCCCCCCChhcHHHHhhh
Q 023214          145 TGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~~  163 (285)
                      +.+|....  ..+.+.+..
T Consensus       640 s~LD~~te--~~i~~~L~~  656 (708)
T TIGR01193       640 SNLDTITE--KKIVNNLLN  656 (708)
T ss_pred             ccCCHHHH--HHHHHHHHH
Confidence            88886554  555555553

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.80  E-value=1.9e-08  Score=85.21  Aligned_cols=45  Identities=22%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      |+..++.++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        21 ~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~~~~G   65 (257)
T PRK14246         21 NDKAILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIEIYDS   65 (257)
T ss_pred             CCceeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence            4567899999999999  89999999999999999999998876654

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.80  E-value=5.6e-09  Score=97.95  Aligned_cols=140  Identities=17%  Similarity=0.089  Sum_probs=76.7

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      +++++++|+.+++|  .+++|+|+||+|||||++.|+|...+..|.... +.... ......+ ...-..+...|-+++.
T Consensus       336 ~~~l~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~-~~~~~~~-~~~i~~v~q~~~lf~~  411 (547)
T PRK10522        336 GFSVGPINLTIKRG--ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT-AEQPEDY-RKLFSAVFTDFHLFDQ  411 (547)
T ss_pred             CeEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC-CCCHHHH-hhheEEEecChhHHHH
Confidence            45899999999999  899999999999999999999988766553211 10000 0000000 0000111111211110


Q ss_pred             CC-C--cHHHHHHHHHHHhhccCCccEEEEEEeC---CCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCC
Q 023214           83 SA-G--SEFVGKEIVKCIGMAKDGIHAVLVVFSV---RSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELED  152 (285)
Q Consensus        83 ~~-~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~  152 (285)
                      .. .  .......+..++... + .+..+-.-+.   +..+|+++++++...+..+.++   +++++   ++..|....
T Consensus       412 ti~~n~~~~~~~~~~~~~~~~-~-l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~---~ililDE~ts~LD~~~~  485 (547)
T PRK10522        412 LLGPEGKPANPALVEKWLERL-K-MAHKLELEDGRISNLKLSKGQKKRLALLLALAEER---DILLLDEWAADQDPHFR  485 (547)
T ss_pred             hhccccCchHHHHHHHHHHHc-C-CchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEECCCCCCCHHHH
Confidence            00 0  001112233333222 1 1111111111   3579999999999999988765   77777   777775543

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.80  E-value=7.9e-09  Score=98.74  Aligned_cols=149  Identities=11%  Similarity=0.050  Sum_probs=81.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC--
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF--   80 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~--   80 (285)
                      +.++++++|+.+++|  ..++|+|+||+|||||++.|+|...+..|...........+..+.. .-...++.|..-+.  
T Consensus       464 ~~~il~~isl~i~~G--e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~-~l~~~tv~eni~~~~~  540 (659)
T TIGR00954       464 GDVLIESLSFEVPSG--NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRP-YMTLGTLRDQIIYPDS  540 (659)
T ss_pred             CCeeeecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCC-CCCCcCHHHHHhcCCC
Confidence            346899999999999  8999999999999999999999876544432111111111111110 00000111111110  


Q ss_pred             -----CCCCCcHHHHHHHHHHHhh-----ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214           81 -----DFSAGSEFVGKEIVKCIGM-----AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG  147 (285)
Q Consensus        81 -----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~  147 (285)
                           ........+ ..+...+..     ...+.|.   +.+....+|+++++++..++.++.++   +++++   ++.+
T Consensus       541 ~~~~~~~~~~~~~i-~~~l~~~~l~~~~~~~~g~~~---~~~~~~~LSgGqkQRl~iARal~~~p---~illLDEpts~L  613 (659)
T TIGR00954       541 SEDMKRRGLSDKDL-EQILDNVQLTHILEREGGWSA---VQDWMDVLSGGEKQRIAMARLFYHKP---QFAILDECTSAV  613 (659)
T ss_pred             hhhhhccCCCHHHH-HHHHHHcCCHHHHhhcCCccc---ccccccCCCHHHHHHHHHHHHHHcCC---CEEEEeCCccCC
Confidence                 000111111 111111100     0011122   12333589999999999999998765   77777   8888


Q ss_pred             CCCCCChhcHHHHhhh
Q 023214          148 DELEDNDETLEDYLGR  163 (285)
Q Consensus       148 D~~~~~~~~l~~~l~~  163 (285)
                      |....  ..+.+.+..
T Consensus       614 D~~~~--~~l~~~l~~  627 (659)
T TIGR00954       614 SVDVE--GYMYRLCRE  627 (659)
T ss_pred             CHHHH--HHHHHHHHH
Confidence            86544  555555553

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=7.9e-09  Score=93.50  Aligned_cols=201  Identities=16%  Similarity=0.191  Sum_probs=123.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccc----------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA----------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      ...+|+++.+-.+||||+-+.++-........                ...++|.........| .+.++++|||||+.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGHVD  116 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCcee
Confidence            44799999999999999998877322211100                1137777777777778 688999999999999


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChh-cHHHH
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE-TLEDY  160 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~-~l~~~  160 (285)
                      |....+           .++...|+.++|+++..++.......++.++.. +  +  |.+..+||+|....+.- .+...
T Consensus       117 FT~EVe-----------RALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-~--v--P~i~FiNKmDRmGa~~~~~l~~i  180 (721)
T KOG0465|consen  117 FTFEVE-----------RALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-N--V--PRICFINKMDRMGASPFRTLNQI  180 (721)
T ss_pred             EEEEeh-----------hhhhhccCeEEEEEcccceehhhHHHHHHHHhc-C--C--CeEEEEehhhhcCCChHHHHHHH
Confidence            865433           234556888899988668888888888888765 3  2  89999999999876422 22222


Q ss_pred             hhhcCCchhH-----hhHHhhhhHHHHHHhcCCC-CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023214          161 LGRECPKPLK-----KGATKLRDQQFEVDSLKGY-SKREISE-LKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAE  233 (285)
Q Consensus       161 l~~~~~~~l~-----~~~~~~~~~~~~i~~~~gy-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~  233 (285)
                      .......++.     ..-..+.++.++++...-| ....... ...++++++++...+.++++.+-+..-.++|-+.+.+
T Consensus       181 ~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLe  260 (721)
T KOG0465|consen  181 RTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLE  260 (721)
T ss_pred             HhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence            2221111111     1122344455444432112 1111111 1134566677666666666666666666666666555


Q ss_pred             HH
Q 023214          234 EQ  235 (285)
Q Consensus       234 ~~  235 (285)
                      ++
T Consensus       261 e~  262 (721)
T KOG0465|consen  261 EE  262 (721)
T ss_pred             cC
Confidence            43

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.80  E-value=1.1e-08  Score=83.41  Aligned_cols=136  Identities=13%  Similarity=0.074  Sum_probs=76.6

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      ++.+++++++..|  ..++|+|++|+|||||.++|+|-..+..|.... |.................+++=|-.+-..+.
T Consensus        21 ~~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~   98 (252)
T COG1124          21 HALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR   98 (252)
T ss_pred             hhhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence            4789999999999  899999999999999999999999877654311 1000000000001022334444444444443


Q ss_pred             CCcHHHH-------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214           84 AGSEFVG-------------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG  147 (285)
Q Consensus        84 ~~~~~~~-------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~  147 (285)
                      .+...+.             +++...+.. ..-+..++.-.+  +.+|+++++++..++.+...+   .++|+   ++-+
T Consensus        99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~-VgL~~~~l~R~P--~eLSGGQ~QRiaIARAL~~~P---klLIlDEptSaL  172 (252)
T COG1124          99 RTVGRILSEPLRPHGLSKSQQRIAELLDQ-VGLPPSFLDRRP--HELSGGQRQRIAIARALIPEP---KLLILDEPTSAL  172 (252)
T ss_pred             hhHHHHHhhhhccCCccHHHHHHHHHHHH-cCCCHHHHhcCc--hhcChhHHHHHHHHHHhccCC---CEEEecCchhhh
Confidence            3322211             112222211 111112222222  469999999999999886654   55555   4444


Q ss_pred             C
Q 023214          148 D  148 (285)
Q Consensus       148 D  148 (285)
                      |
T Consensus       173 D  173 (252)
T COG1124         173 D  173 (252)
T ss_pred             c
Confidence            4

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=1.2e-08  Score=94.89  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=37.9

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      ++..+++++|+.+..|  ..++|+|+||||||||+++|+|...+
T Consensus        16 ~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~   57 (506)
T PRK13549         16 GGVKALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYPH   57 (506)
T ss_pred             CCeEeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3456899999999999  89999999999999999999998764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=6.5e-09  Score=88.92  Aligned_cols=43  Identities=16%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .+++.++|+++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        15 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (274)
T PRK13644         15 TPALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKG   57 (274)
T ss_pred             CceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            46899999999999  89999999999999999999998766554

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.80  E-value=1.1e-08  Score=94.80  Aligned_cols=45  Identities=24%  Similarity=0.301  Sum_probs=39.9

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++|+.+..|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        10 ~~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   54 (491)
T PRK10982         10 GVKALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQKDSGS   54 (491)
T ss_pred             CEEeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCceE
Confidence            456899999999999  899999999999999999999988765543

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=4.6e-08  Score=83.98  Aligned_cols=42  Identities=24%  Similarity=0.208  Sum_probs=38.4

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        21 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G   62 (280)
T PRK13649         21 RALFDVNLTIEDG--SYTAFIGHTGSGKSTIMQLLNGLHVPTQG   62 (280)
T ss_pred             ceeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            5899999999999  89999999999999999999998766554

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.80  E-value=1.9e-08  Score=84.94  Aligned_cols=41  Identities=24%  Similarity=0.281  Sum_probs=37.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      +.++++++|+++.+|  ..++|+|+||+|||||+++|+|...+
T Consensus        15 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~   55 (250)
T PRK14247         15 QVEVLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIEL   55 (250)
T ss_pred             CeeeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            456889999999999  89999999999999999999998753

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.80  E-value=1.3e-08  Score=84.18  Aligned_cols=146  Identities=15%  Similarity=0.114  Sum_probs=81.0

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee----EEE-EE--EEeeCCceEEEEeCCCC
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST----CEM-QR--TVLKDGQVVNVIDTPGL   79 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~----~~~-~~--~~~~~~~~~~liDtpG~   79 (285)
                      -.++||+++.|  -+++++|+||+||||++++|+|...|.+|...-+--..    ..+ .+  ... ....-..||.|-.
T Consensus        40 Vqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~-gqk~ql~Wdlp~~  116 (325)
T COG4586          40 VQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVM-GQKLQLWWDLPAL  116 (325)
T ss_pred             hheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHh-hhhheeeeechhh
Confidence            46889999999  89999999999999999999999988776432110000    000 00  001 2233567888844


Q ss_pred             CCCCCC------cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCC
Q 023214           80 FDFSAG------SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDEL  150 (285)
Q Consensus        80 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~  150 (285)
                      .+....      +++..++-...+... -+.+.+  +-..-..+|-+++.+.+++-.++.++   .++++   +--+|-.
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~ei-Ldl~~~--lk~~vr~LSlGqRmraeLaaaLLh~p---~VLfLDEpTvgLDV~  190 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEI-LDLEGF--LKWPVRKLSLGQRMRAELAAALLHPP---KVLFLDEPTVGLDVN  190 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHH-hcchhh--hhhhhhhccchHHHHHHHHHHhcCCC---cEEEecCCccCcchh
Confidence            332100      011011111111110 011221  11122478888888888888877654   45555   4445544


Q ss_pred             CCChhcHHHHhhh
Q 023214          151 EDNDETLEDYLGR  163 (285)
Q Consensus       151 ~~~~~~l~~~l~~  163 (285)
                      ..  ..+.+|++.
T Consensus       191 aq--~~ir~Flke  201 (325)
T COG4586         191 AQ--ANIREFLKE  201 (325)
T ss_pred             HH--HHHHHHHHH
Confidence            44  667777764

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.80  E-value=1.2e-08  Score=83.67  Aligned_cols=43  Identities=19%  Similarity=0.235  Sum_probs=38.7

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++++.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        21 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   63 (207)
T cd03369          21 PPVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEAEEG   63 (207)
T ss_pred             cccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            36899999999999  89999999999999999999998766554

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR01069 mutS2 MutS2 family protein

Probab=98.80  E-value=7.9e-07  Score=85.95  Aligned_cols=31  Identities=19%  Similarity=0.212  Sum_probs=24.8

Q ss_pred             cccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ++.+..+ ..+++|+||||+|||||+++|.+.
T Consensus       315 di~l~~~-~~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       315 TLNLKFE-KRVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             eeEeCCC-ceEEEEECCCCCCchHHHHHHHHH
Confidence            4444433 268999999999999999999877

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.80  E-value=1.3e-09  Score=88.62  Aligned_cols=169  Identities=15%  Similarity=0.133  Sum_probs=93.3

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-C--c----ceeEEEEEEEeeCCceEEEE
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-G--V----TSTCEMQRTVLKDGQVVNVI   74 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~--~----t~~~~~~~~~~~~~~~~~li   74 (285)
                      |+..+.+|++|.+++|  ...+++|+||+||||++++|+|-..+..|.... +  .    .....|.+-+-.--+++++.
T Consensus        13 g~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~   90 (300)
T COG4152          13 GDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVE   90 (300)
T ss_pred             CceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHH
Confidence            4566788999999999  899999999999999999999988776543211 1  0    00111111110011234444


Q ss_pred             eCCCCCCC--CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCC
Q 023214           75 DTPGLFDF--SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDE  149 (285)
Q Consensus        75 DtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~  149 (285)
                      |..-|...  .....++...+..++..    .+..-+.-+--..+|.+..+-++++......+   -.+|+   |+-+|=
T Consensus        91 dql~yla~LkGm~~~e~~~~~~~wLer----~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP---eLlILDEPFSGLDP  163 (300)
T COG4152          91 DQLKYLAELKGMPKAEIQKKLQAWLER----LEIVGKKTKKIKELSKGNQQKIQFISAVIHEP---ELLILDEPFSGLDP  163 (300)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHh----ccccccccchHHHhhhhhhHHHHHHHHHhcCC---CEEEecCCccCCCh
Confidence            43322211  01123334444444332    23323333332468888888888888887765   46666   777775


Q ss_pred             CCCChhcHHHHhhh--cCCchhH---hhHHhhhhHHH
Q 023214          150 LEDNDETLEDYLGR--ECPKPLK---KGATKLRDQQF  181 (285)
Q Consensus       150 ~~~~~~~l~~~l~~--~~~~~l~---~~~~~~~~~~~  181 (285)
                      ...  +.+.+.+..  ..+..+.   -.|.++.++.+
T Consensus       164 VN~--elLk~~I~~lk~~GatIifSsH~Me~vEeLCD  198 (300)
T COG4152         164 VNV--ELLKDAIFELKEEGATIIFSSHRMEHVEELCD  198 (300)
T ss_pred             hhH--HHHHHHHHHHHhcCCEEEEecchHHHHHHHhh
Confidence            544  555554432  2222222   34555555554

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=5.4e-08  Score=77.42  Aligned_cols=128  Identities=16%  Similarity=0.202  Sum_probs=77.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|.++|++++|||+|+-.|.......+     -+++........+ +...+++||.||+..       .+..+..++..
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-----vtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~  105 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-----VTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH  105 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCe-----eeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence            6999999999999999876664332211     1122222333344 455689999999753       34444444432


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC----ccccCeEEEEEeCCCCCCCC-hhcHHHHhh
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELEDN-DETLEDYLG  162 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~iil~nk~D~~~~~-~~~l~~~l~  162 (285)
                      . ..+-+++||+|.. -+...-+...+++-..+-    ..-..|++|..||.|..... .+.+++.++
T Consensus       106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LE  171 (238)
T KOG0090|consen  106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLE  171 (238)
T ss_pred             c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHH
Confidence            2 2567999999975 455555555554443331    12235899999999988652 233444444

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=6e-09  Score=89.11  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        18 ~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (274)
T PRK13647         18 TKALKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLPQRG   60 (274)
T ss_pred             CeeeeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            46899999999999  89999999999999999999998876554

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=4.2e-09  Score=88.17  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G   60 (237)
T PRK11614         17 KIQALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRATSG   60 (237)
T ss_pred             CceeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            356889999999999  89999999999999999999998876554

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.79  E-value=1.3e-08  Score=96.13  Aligned_cols=148  Identities=20%  Similarity=0.204  Sum_probs=82.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC-
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD-   81 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~-   81 (285)
                      .++++++|+.+++|  .+++++|+||+|||||++.|+|...+..|.... +.... ......+ ...-..+...|.+++ 
T Consensus       348 ~~~l~~i~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~-~~~~~~~-~~~i~~v~q~~~lf~~  423 (585)
T TIGR01192       348 SQGVFDVSFEAKAG--QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN-TVTRESL-RKSIATVFQDAGLFNR  423 (585)
T ss_pred             CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhh-hCCHHHH-HhheEEEccCCccCcc
Confidence            45789999999999  899999999999999999999988766553211 10000 0000000 000011222222221 


Q ss_pred             ----------CCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           82 ----------FSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        82 ----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                                +..+++++......     .+.....+.|..  +-+.+..+|+++++++...+..+.++   +++++   
T Consensus       424 ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~--~~~~~~~LSgGq~qrl~lARall~~p---~ililDEp  498 (585)
T TIGR01192       424 SIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTL--VGERGNRLSGGERQRLAIARAILKNA---PILVLDEA  498 (585)
T ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccch--hcCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEECC
Confidence                      11122222221111     111111122221  22334579999999999999988765   77777   


Q ss_pred             EeCCCCCCCChhcHHHHhh
Q 023214          144 FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~  162 (285)
                      ++.+|....  ..+.+.+.
T Consensus       499 ts~LD~~~~--~~i~~~l~  515 (585)
T TIGR01192       499 TSALDVETE--ARVKNAID  515 (585)
T ss_pred             ccCCCHHHH--HHHHHHHH
Confidence            888886655  55555554

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.79  E-value=1.5e-08  Score=79.09  Aligned_cols=55  Identities=27%  Similarity=0.424  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (285)
                      .+++++|.+|+|||||+|+|++......+.. .++|.......    .+..++|+||||+
T Consensus       101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~~----~~~~~~liDtPG~  155 (155)
T cd01849         101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEVK----LDNKIKLLDTPGI  155 (155)
T ss_pred             cEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEEE----ecCCEEEEECCCC
Confidence            7999999999999999999999875443332 34454443322    2456899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=3e-08  Score=85.18  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+.+..|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        18 ~~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G   61 (283)
T PRK13636         18 GTHALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILKPSSG   61 (283)
T ss_pred             CCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCcc
Confidence            356899999999999  89999999999999999999998876554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.79  E-value=9.2e-09  Score=95.48  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        16 ~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   60 (501)
T PRK11288         16 GVKALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQPDAGS   60 (501)
T ss_pred             CEEEEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            346899999999999  899999999999999999999988665543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.79  E-value=8.4e-09  Score=80.72  Aligned_cols=41  Identities=32%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      ..++.++++.+.+|  ..++|+|+||+|||||+++|.|...+.
T Consensus        12 ~~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~~~   52 (157)
T cd00267          12 RTALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLKPT   52 (157)
T ss_pred             eeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            35788999999999  899999999999999999999987543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.79  E-value=2e-08  Score=82.06  Aligned_cols=42  Identities=31%  Similarity=0.376  Sum_probs=38.6

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .+++++|+.+++|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        19 ~il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~~~~G   60 (204)
T cd03250          19 FTLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELEKLSG   60 (204)
T ss_pred             ceeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCCCCCC
Confidence            6899999999999  89999999999999999999998776554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=2e-07  Score=69.11  Aligned_cols=125  Identities=15%  Similarity=0.176  Sum_probs=80.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +.+|+.+|-.++||||++-.|.-...     ....+|+......+.+ .+..++++|..|..           .++..+.
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRplWr   79 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPLWR   79 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHHHH
Confidence            48999999999999999977653221     1123345555555666 67889999998854           3445666


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc--CeEEEEEeCCCCCCCC-hhcHHHHhh
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF--DYMIVVFTGGDELEDN-DETLEDYLG  162 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~iil~nk~D~~~~~-~~~l~~~l~  162 (285)
                      .+|++..+++||+|..++ ..-+..+-++ ...++.+-.  .+++|+.||.|....- ...+.++++
T Consensus        80 hYy~gtqglIFV~Dsa~~-dr~eeAr~EL-h~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le  144 (180)
T KOG0071|consen   80 HYYTGTQGLIFVVDSADR-DRIEEARNEL-HRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE  144 (180)
T ss_pred             hhccCCceEEEEEeccch-hhHHHHHHHH-HHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence            779999999999998644 3223233222 222233222  2677779999987441 244555554

>PRK13768 GTPase; Provisional

Probab=98.78  E-value=3.4e-08  Score=83.37  Aligned_cols=81  Identities=17%  Similarity=0.154  Sum_probs=50.1

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCC
Q 023214           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (285)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D  148 (285)
                      ..+.++||||..++... ...+..+.+.+....  .+++++|+|+....+..+.....++..........|+++++||.|
T Consensus        97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D  173 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD  173 (253)
T ss_pred             CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence            36899999998764322 233445555554332  789999999965566666444333321110011239999999999


Q ss_pred             CCCC
Q 023214          149 ELED  152 (285)
Q Consensus       149 ~~~~  152 (285)
                      ....
T Consensus       174 ~~~~  177 (253)
T PRK13768        174 LLSE  177 (253)
T ss_pred             hcCc
Confidence            9876

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.78  E-value=1.1e-08  Score=96.38  Aligned_cols=151  Identities=11%  Similarity=-0.010  Sum_probs=83.3

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+.+++|  .+++|+|+||+|||||++.|+|...|..|.... +..          ....+..+.. .-..-+
T Consensus       328 ~~~l~~i~~~i~~G--~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~-~lf~~t  404 (569)
T PRK10789        328 HPALENVNFTLKPG--QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP-FLFSDT  404 (569)
T ss_pred             CccccCeeEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC-eecccc
Confidence            46899999999999  899999999999999999999998776653211 000          0011111000 000001


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHH-h-hccCCccEEEEEEe-CCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKCI-G-MAKDGIHAVLVVFS-VRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG  146 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~v~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk  146 (285)
                      +-|..-+..+..+++.+...+..+- . ....-++++-..++ .+..+|+++++++...+..+.++   +++++   ++.
T Consensus       405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~---~illlDEpts~  481 (569)
T PRK10789        405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA---EILILDDALSA  481 (569)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEECcccc
Confidence            1111111111122222222111100 0 00011233322332 34579999999999999988765   77777   788


Q ss_pred             CCCCCCChhcHHHHhh
Q 023214          147 GDELEDNDETLEDYLG  162 (285)
Q Consensus       147 ~D~~~~~~~~l~~~l~  162 (285)
                      +|....  ..+.+.+.
T Consensus       482 LD~~~~--~~i~~~l~  495 (569)
T PRK10789        482 VDGRTE--HQILHNLR  495 (569)
T ss_pred             CCHHHH--HHHHHHHH
Confidence            886554  55555554

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.78  E-value=4.1e-08  Score=84.47  Aligned_cols=64  Identities=23%  Similarity=0.345  Sum_probs=47.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~   88 (285)
                      .+++++|.+|+|||||+|+|+|......+. ..++|...+...    .+..+.|+||||+..+......
T Consensus       122 ~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~~~  185 (287)
T PRK09563        122 IRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPKLEDQE  185 (287)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCcHH
Confidence            799999999999999999999987644433 345666654322    2456899999999877654443

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.78  E-value=2.7e-08  Score=87.89  Aligned_cols=44  Identities=23%  Similarity=0.231  Sum_probs=39.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++++++..|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        16 ~~~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p~~G   59 (353)
T TIGR03265        16 AFTALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQTAG   59 (353)
T ss_pred             CeEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCCCce
Confidence            345788999999999  89999999999999999999999876655

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=3.3e-08  Score=85.14  Aligned_cols=43  Identities=26%  Similarity=0.237  Sum_probs=39.2

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        20 ~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G   62 (287)
T PRK13637         20 KKALDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKPTSG   62 (287)
T ss_pred             cceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCcc
Confidence            36899999999999  89999999999999999999999876655

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=2.5e-08  Score=89.30  Aligned_cols=146  Identities=14%  Similarity=0.123  Sum_probs=80.9

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEE---eeCCceEEEEeCCCCC
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTV---LKDGQVVNVIDTPGLF   80 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~---~~~~~~~~liDtpG~~   80 (285)
                      ..++++||.+..|  ..++|+|+||+|||||+++|+|...+.+|.... +..... .....   .....-.++.+.|+++
T Consensus        42 ~~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~-~~~~~l~~~~~~~igyv~Q~~~l~  118 (400)
T PRK10070         42 LGVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK-ISDAELREVRRKKIAMVFQSFALM  118 (400)
T ss_pred             EEEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCc-CCHHHHHHHHhCCEEEEECCCcCC
Confidence            3678999999999  899999999999999999999998766553211 100000 00000   0000122344455544


Q ss_pred             CCCCCcH--------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           81 DFSAGSE--------------FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        81 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      ......+              .....+...+...  +.+.  +.-..-..+|+++++++.+++.+...+   +++++   
T Consensus       119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~--gL~~--~~~~~~~~LSgGq~QRv~LArAL~~~P---~iLLLDEP  191 (400)
T PRK10070        119 PHMTVLDNTAFGMELAGINAEERREKALDALRQV--GLEN--YAHSYPDELSGGMRQRVGLARALAINP---DILLMDEA  191 (400)
T ss_pred             CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCCh--hhhcCcccCCHHHHHHHHHHHHHhcCC---CEEEEECC
Confidence            2111001              0111111122111  1111  111112479999999999998887765   67777   


Q ss_pred             EeCCCCCCCChhcHHHHhh
Q 023214          144 FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~  162 (285)
                      ++.+|....  ..+.+.+.
T Consensus       192 ts~LD~~~r--~~l~~~L~  208 (400)
T PRK10070        192 FSALDPLIR--TEMQDELV  208 (400)
T ss_pred             CccCCHHHH--HHHHHHHH
Confidence            788886655  55555554

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.78  E-value=1.4e-08  Score=94.46  Aligned_cols=44  Identities=20%  Similarity=0.156  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+..|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G   60 (510)
T PRK09700         17 PVHALKSVNLTVYPG--EIHALLGENGAGKSTLMKVLSGIHEPTKG   60 (510)
T ss_pred             CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCcCCCcc
Confidence            456899999999999  89999999999999999999999876554

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.78  E-value=1.1e-08  Score=87.14  Aligned_cols=43  Identities=28%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        24 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   66 (265)
T TIGR02769        24 APVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKPAQG   66 (265)
T ss_pred             eEEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            56899999999999  89999999999999999999998876554

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.78  E-value=2.7e-08  Score=87.94  Aligned_cols=45  Identities=29%  Similarity=0.382  Sum_probs=39.7

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +..+++++++++..|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        14 ~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~   58 (353)
T PRK10851         14 RTQVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQTSGH   58 (353)
T ss_pred             CeEEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            346789999999999  899999999999999999999988766553

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=3.5e-08  Score=84.92  Aligned_cols=43  Identities=21%  Similarity=0.159  Sum_probs=39.2

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+++..|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        20 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G   62 (286)
T PRK13646         20 HQAIHDVNTEFEQG--KYYAIVGQTGSGKSTLIQNINALLKPTTG   62 (286)
T ss_pred             cCceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            36999999999999  89999999999999999999998876655

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.78  E-value=8.4e-08  Score=76.26  Aligned_cols=36  Identities=31%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .++++++|+++.+|  .+++|+|+||+|||||+++|++
T Consensus         8 ~~~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238           8 VHNLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             eeeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhh
Confidence            56799999999999  8999999999999999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.78  E-value=1.2e-08  Score=84.47  Aligned_cols=43  Identities=23%  Similarity=0.306  Sum_probs=39.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+++|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        17 ~~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   59 (221)
T cd03244          17 PPVLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVELSSG   59 (221)
T ss_pred             cccccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            36899999999999  89999999999999999999998876554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.78  E-value=5.1e-08  Score=80.99  Aligned_cols=39  Identities=28%  Similarity=0.460  Sum_probs=36.8

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...
T Consensus        20 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          20 ARILNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cccccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccC
Confidence            57899999999999  8999999999999999999999876

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.78  E-value=1.1e-08  Score=98.64  Aligned_cols=148  Identities=17%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+.+++|  .+|+++|+||+|||||++.|+|...+..|.... +..          ....+.++.. .--.-+
T Consensus       478 ~~vL~~i~l~i~~G--~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~-~lf~~T  554 (694)
T TIGR03375       478 TPALDNVSLTIRPG--EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP-RLFYGT  554 (694)
T ss_pred             ccceeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCCh-hhhhhh
Confidence            46889999999999  899999999999999999999998776653211 100          0011111100 000011


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHH-----HhhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKC-----IGMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                      +-|.-.+.++..+++++.+-+..+     +. .+  ++++--.+ +.+..+|+++++++..++..+.++   +++++   
T Consensus       555 I~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~-~l--p~gl~T~i~e~G~~LSgGQrQRlalARall~~p---~iliLDE~  628 (694)
T TIGR03375       555 LRDNIALGAPYADDEEILRAAELAGVTEFVR-RH--PDGLDMQIGERGRSLSGGQRQAVALARALLRDP---PILLLDEP  628 (694)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHcChHHHHH-hC--cccccceecCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCC
Confidence            111111222222233322222211     11 11  22222222 345679999999999999998765   77777   


Q ss_pred             EeCCCCCCCChhcHHHHhh
Q 023214          144 FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~  162 (285)
                      ++.+|....  ..+.+.+.
T Consensus       629 Ts~LD~~te--~~i~~~l~  645 (694)
T TIGR03375       629 TSAMDNRSE--ERFKDRLK  645 (694)
T ss_pred             CCCCCHHHH--HHHHHHHH
Confidence            777775544  45555554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd01855 YqeH YqeH

Probab=98.78  E-value=1.3e-08  Score=82.26  Aligned_cols=56  Identities=30%  Similarity=0.345  Sum_probs=39.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc-------cccCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFK-------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (285)
                      .+++++|.+|+|||||+|+|++.....       ......++|........    +..+.|+||||+
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            689999999999999999999865422       11223355555433332    235899999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=1.6e-08  Score=86.63  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=39.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+++++++.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G   59 (277)
T PRK13652         17 KEALNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKPTSG   59 (277)
T ss_pred             CceeeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            35899999999999  89999999999999999999998876655

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=3.8e-08  Score=84.88  Aligned_cols=43  Identities=28%  Similarity=0.292  Sum_probs=39.2

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+..|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        20 ~~~L~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   62 (290)
T PRK13634         20 RRALYDVNVSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLQPTSG   62 (290)
T ss_pred             ccceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            46899999999999  89999999999999999999998876554

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=4.1e-08  Score=84.05  Aligned_cols=43  Identities=21%  Similarity=0.166  Sum_probs=38.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        15 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   57 (275)
T PRK13639         15 TEALKGINFKAEKG--EMVALLGPNGAGKSTLFLHFNGILKPTSG   57 (275)
T ss_pred             CeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            46899999999999  89999999999999999999998766554

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.77  E-value=2.2e-08  Score=84.68  Aligned_cols=41  Identities=22%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      +.++++++++.+.+|  ..++|+|+||+|||||+++|+|...+
T Consensus        16 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~   56 (253)
T PRK14267         16 SNHVIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLEL   56 (253)
T ss_pred             CeeeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCc
Confidence            456899999999999  89999999999999999999998754

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=5.3e-08  Score=89.01  Aligned_cols=116  Identities=24%  Similarity=0.319  Sum_probs=80.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccC---------------CCCcceeEEEEEEEeeC----CceEEEEeCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---------------SSGVTSTCEMQRTVLKD----GQVVNVIDTPGL   79 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~---------------~~~~t~~~~~~~~~~~~----~~~~~liDtpG~   79 (285)
                      ..+|+++|+=++|||+|+.+|.++..+.....               ..+++++.........+    ..-++++||||+
T Consensus       128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH  207 (971)
T KOG0468|consen  128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH  207 (971)
T ss_pred             EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence            47899999999999999999998887543111               12455554444433322    244899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      .++.       .+..    ..+.-+|++++|+|+.+++.-.....++.+.+   ...  ++++++||+|.+
T Consensus       208 VnF~-------DE~t----a~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~--~i~vviNKiDRL  262 (971)
T KOG0468|consen  208 VNFS-------DETT----ASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRL--PIVVVINKVDRL  262 (971)
T ss_pred             ccch-------HHHH----HHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccC--cEEEEEehhHHH
Confidence            9863       2222    23455699999999977877766655554443   233  899999999976

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=7e-08  Score=80.41  Aligned_cols=126  Identities=17%  Similarity=0.242  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc---------cccc-----CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAF---------KSRA-----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~---------~~~~-----~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      .+|+.||+...|||||-.+|+....-         ....     -..|+|+......++. ..+.+..+|+||+.|.   
T Consensus        13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDY---   88 (394)
T COG0050          13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADY---   88 (394)
T ss_pred             eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHH---
Confidence            69999999999999999988754321         0000     1236666655555555 6788999999997642   


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~  163 (285)
                         +.+.|..+     ...|+.++|+++.+..-++.+..+-+.+.. |-+   .+++++||+|..++  ..+-+.+..
T Consensus        89 ---vKNMItgA-----aqmDgAILVVsA~dGpmPqTrEHiLlarqv-Gvp---~ivvflnK~Dmvdd--~ellelVem  152 (394)
T COG0050          89 ---VKNMITGA-----AQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YIVVFLNKVDMVDD--EELLELVEM  152 (394)
T ss_pred             ---HHHHhhhH-----HhcCccEEEEEcCCCCCCcchhhhhhhhhc-CCc---EEEEEEecccccCc--HHHHHHHHH
Confidence               22222222     245788999999777777777776666554 654   78888999999987  666666653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.77  E-value=1.4e-08  Score=85.07  Aligned_cols=44  Identities=32%  Similarity=0.349  Sum_probs=39.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   55 (237)
T TIGR00968        12 SFQALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQPDSG   55 (237)
T ss_pred             CeeeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            456899999999999  89999999999999999999998765544

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.76  E-value=2.3e-08  Score=93.82  Aligned_cols=147  Identities=16%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCC--
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLF--   80 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~--   80 (285)
                      .++++++|+.+++|  .+++++|+||+|||||++.|+|...+..|.... +..... .....+ ...-..+.+.|.++  
T Consensus       331 ~~~l~~~~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~-~~~~~~-~~~i~~v~q~~~lf~~  406 (544)
T TIGR01842       331 KPTLRGISFRLQAG--EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ-WDRETF-GKHIGYLPQDVELFPG  406 (544)
T ss_pred             ccccccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh-CCHHHH-hhheEEecCCcccccc
Confidence            46899999999999  899999999999999999999998766553211 100000 000000 00011122222222  


Q ss_pred             ---------CCCCCcHHHHHHHH-----HHHhhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214           81 ---------DFSAGSEFVGKEIV-----KCIGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--  143 (285)
Q Consensus        81 ---------~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--  143 (285)
                               ....+++.+...+.     ..+ ..+| +.|..  +-..+..+|+++++++...+..+.++   +++++  
T Consensus       407 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~gl~t~--~~~~g~~LSgGq~qrl~lARall~~~---~ililDE  480 (544)
T TIGR01842       407 TVAENIARFGENADPEKIIEAAKLAGVHELI-LRLPDGYDTV--IGPGGATLSGGQRQRIALARALYGDP---KLVVLDE  480 (544)
T ss_pred             cHHHHHhccCCCCCHHHHHHHHHHhChHHHH-HhCccccccc--cCCCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Confidence                     11112222222111     111 1122 22321  22234579999999999999998766   77777  


Q ss_pred             -EeCCCCCCCChhcHHHHhh
Q 023214          144 -FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 -~nk~D~~~~~~~~l~~~l~  162 (285)
                       ++..|....  ..+.+.+.
T Consensus       481 pts~LD~~~~--~~i~~~l~  498 (544)
T TIGR01842       481 PNSNLDEEGE--QALANAIK  498 (544)
T ss_pred             CccccCHHHH--HHHHHHHH
Confidence             788886654  55555554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.76  E-value=2.8e-08  Score=95.98  Aligned_cols=140  Identities=15%  Similarity=0.047  Sum_probs=77.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~   72 (285)
                      .++++|+|+++++|  .+++|+|+||+|||||++.|+|...+..|.... +..          ..+.+.++.. .=-.-+
T Consensus       494 ~~vL~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lF~gT  570 (711)
T TIGR00958       494 VPVLKGLTFTLHPG--EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEP-VLFSGS  570 (711)
T ss_pred             CccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCc-cccccC
Confidence            46899999999999  899999999999999999999988766553211 000          0111111110 000001


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHH----HhhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKC----IGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      +-|-.-+..+..+++.+.+-+..+    +...+| +.|..  +-+.+..+|+++++++...+..+.++   +++|+   +
T Consensus       571 IreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~--ige~G~~LSGGQkQRlalARALl~~p---~ILILDEpT  645 (711)
T TIGR00958       571 VRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE--VGEKGSQLSGGQKQRIAIARALVRKP---RVLILDEAT  645 (711)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCc--ccCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEEccc
Confidence            111111111111222222211111    001111 22321  22334579999999999999998765   78877   7


Q ss_pred             eCCCCCC
Q 023214          145 TGGDELE  151 (285)
Q Consensus       145 nk~D~~~  151 (285)
                      +..|...
T Consensus       646 SaLD~~t  652 (711)
T TIGR00958       646 SALDAEC  652 (711)
T ss_pred             cccCHHH
Confidence            7777543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.76  E-value=3e-08  Score=85.24  Aligned_cols=60  Identities=33%  Similarity=0.396  Sum_probs=41.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----C--CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~----~--~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      .+++++|++|+|||||+|+|+|...+.++...    .  ++|.....+..    .....++||||+.++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~----~~~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPL----PGGGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEc----CCCCEEEECCCCCccC
Confidence            68999999999999999999998876554322    1  23443333322    1234799999997643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.76  E-value=7.3e-08  Score=78.69  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=40.6

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +|+++.++++.+++.|  .+-+|+|+||||||||++.++|..++.++
T Consensus        42 ~gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~pssg   86 (257)
T COG1119          42 NGKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPPSSG   86 (257)
T ss_pred             CCEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            4678899999999999  89999999999999999999999976543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=3.6e-08  Score=84.94  Aligned_cols=42  Identities=26%  Similarity=0.173  Sum_probs=38.8

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .+++++|+++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        21 ~~l~~vsl~i~~G--e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G   62 (287)
T PRK13641         21 KGLDNISFELEEG--SFVALVGHTGSGKSTLMQHFNALLKPSSG   62 (287)
T ss_pred             cceeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            5899999999999  89999999999999999999999877655

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.76  E-value=5.2e-08  Score=80.64  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        18 ~~il~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~~~~G   60 (220)
T TIGR02982        18 KQVLFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRSVQEG   60 (220)
T ss_pred             eeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            56899999999999  89999999999999999999998766554

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.76  E-value=3.5e-08  Score=85.32  Aligned_cols=59  Identities=31%  Similarity=0.379  Sum_probs=41.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      ..++++|++|+|||||+|+|+|...+.++....      .+|.....+..    +....|+||||+..+
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~----~~~~~~~DtpG~~~~  229 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL----PGGGLLIDTPGFSSF  229 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc----CCCcEEEECCCcCcc
Confidence            689999999999999999999987765543321      23333333222    223589999999854

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.76  E-value=3.9e-08  Score=83.85  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        25 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG   67 (268)
T PRK10419         25 QTVLNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESPSQG   67 (268)
T ss_pred             eeeEeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            57899999999999  89999999999999999999998766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		1e-20
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		8e-16
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		1e-15
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		1e-15
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		2e-15
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		1e-14

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 15  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
           P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGK 134
           DTPG+FD    +    KEI++CI +   G HA+L          +EE  A   +   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKXFGE 142
Query: 135 KIFDYMIVVF 144
           +   + I++F
Sbjct: 143 RARSFXILIF 152

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 78  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 137 AMGHTIVLF 145

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 119
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 120 AMGHTIVLF 128

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78
           E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
           +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+    
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMG 119
Query: 139 YMIVVF 144
           + IV+F
Sbjct: 120 HTIVLF 125

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP  F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 78  TPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 137 AXGHTIVLF 145

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
           R ++LVGRTG GKSATGNSILG+R F SR  ++ VT  C    +   D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80  FDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
           F         G +E   C  ++  G HA+L          Q+++ A+  ++ +FG+ +  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLK 139
Query: 139 YMIVVF 144
           +M++VF
Sbjct: 140 WMVIVF 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	5e-49
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	1e-47
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	1e-47
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	1e-46
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	2e-43
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  162 bits (411), Expect = 5e-49
 Identities = 38/222 (17%), Positives = 86/222 (38%), Gaps = 14/222 (6%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
           +L        TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  
Sbjct: 28  KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFT 85

Query: 71  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130
           +N+IDTPGL +    +    + I   +      +   +    V     + ++  + ++  
Sbjct: 86  INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQVVIAITQ 144

Query: 131 LFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLK--- 187
            FGK+I+   ++V T       ++ + E +  +     LK      + ++ E +      
Sbjct: 145 TFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAV 204

Query: 188 --------GYSKREISELKEQMHKSYEDQLKRITEMVESKLK 221
                        +  +          + +K IT++  ++ K
Sbjct: 205 VYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRK 246

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  158 bits (400), Expect = 1e-47
 Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 23/229 (10%)

Query: 14  SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNV 73
            P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 133
           +DTPG+FD    +    KEI++CI +   G HA+L+V  +  R+++EE  A   +  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKRE 193
           ++   +MI++FT  D+L   D  L DYL RE P+ ++       D+   +++    +++E
Sbjct: 142 ERARSFMILIFTRKDDLG--DTNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQE 198

Query: 194 --ISELKEQMHKSYEDQLKRITEMVESKLK-----ETTTRLEQQLAEEQ 235
              ++L           L  I  +V    +         R E+++ ++ 
Sbjct: 199 AQRAQL-----------LGLIQRVVRENKEGCYTNRMYQRAEEEIQKQT 236

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  159 bits (402), Expect = 1e-47
 Identities = 64/270 (23%), Positives = 123/270 (45%), Gaps = 18/270 (6%)

Query: 4   SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT 63
           S      +    S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   + 
Sbjct: 7   SHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG 66

Query: 64  VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA 123
                + + +IDTP +F +    E + KE+ +C  ++  G H +L+V  +  R++ +++ 
Sbjct: 67  SW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQ 124

Query: 124 ALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEV 183
           A   ++ +FG+    + IV+FT  ++L     +L DY+     K L K       +    
Sbjct: 125 AAQRVKEIFGEDAMGHTIVLFTHKEDLN--GGSLMDYMHDSDNKALSKLVAACGGRICAF 182

Query: 184 DSLKGYSKREISELKEQMHKSYEDQLKRITEMV-ESKLKETTTRLEQQLAEEQAARLKAE 242
           +     ++ E S   +Q+    ++ +  I +++ E      T  L   +   +   + ++
Sbjct: 183 N-----NRAEGSNQDDQV----KELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSD 233

Query: 243 EVAQLAQMKSNDEIRKLRENLERAQRETEE 272
           E  ++ + K    + K  E         E 
Sbjct: 234 E--RVKEFK--QSLIKYMETQRSYTALAEA 259

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  156 bits (395), Expect = 1e-46
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 5/169 (2%)

Query: 3   GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR 62
              ++    L        T++++G+ G GKS+T NSI+G R        S       + R
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFSQEE 121
           +    G  +N+IDTPGL +    ++     I   +      I  +L V  +   R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 122 EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170
           +    ++   FGK I++  IV  T       +    +++  +     L+
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 60.5 bits (146), Expect = 1e-10
 Identities = 31/235 (13%), Positives = 76/235 (32%), Gaps = 26/235 (11%)

Query: 12  LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDGQV 70
           L    +    V + G TG+GKS+  N++ G    +  A+ +GV     E       +   
Sbjct: 62  LKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPN 121

Query: 71  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130
           V   D PG+   +   +   +++                +    +RF + +     ++  
Sbjct: 122 VVFWDLPGIGSTNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDIDIAKAISM 173

Query: 131 LFGKKIFDYMIVVFTGGDELEDND----------ETLEDYLGRECPKPLKKGATKLRDQQ 180
              K+       V T  D    N+          E +   +   C    ++    + +  
Sbjct: 174 -MKKEF----YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE--NGIAEPP 226

Query: 181 FEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQ 235
             + S K     +   L +++        +    +    + ++    ++Q  +++
Sbjct: 227 IFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQR 281

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 47/327 (14%), Positives = 109/327 (33%), Gaps = 70/327 (21%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGV----TSTCEMQRTVLKDGQVVNV 73
            + V++ G  G+GK+     +    ++K        +       C    TVL+  Q +  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 74  IDTPGLFDFSAGSEFV------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 127
              P     S  S  +       +  ++ +  +K   + +LV+ +V++  ++   A   S
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLS 265

Query: 128 LQTLF---GKKIFDYMIVVFTGGDELEDN------DETLE---DYLGREC---PK----- 167
            + L     K++ D++    T    L+ +      DE       YL       P+     
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 168 -PLKKG--ATKLRD--------QQFEVDSLKGYSKREISELKEQMHKSYEDQLK------ 210
            P +    A  +RD        +    D L    +  ++ L+   ++   D+L       
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 211 RITEMVESKL-KETTTRLEQQLAEEQAARLKAEE-----------VAQLAQMKSNDEI-- 256
            I  ++ S +  +        +  +       E+           +    ++K  +E   
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 257 -RKLRE--NLERAQRETEELRKQAEKG 280
            R + +  N+ +   ++++L       
Sbjct: 446 HRSIVDHYNIPKT-FDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 7e-06
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 50/207 (24%)

Query: 86  SEFVGKEIVKCIGMAKD------GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD- 138
           ++     +V+     K        I ++ +      +   E E ALH       + I D 
Sbjct: 409 NKLHKYSLVE-----KQPKESTISIPSIYL----ELKVKLENEYALH-------RSIVDH 452

Query: 139 YMIVVFTGGDELEDNDETL--ED-----YLGR--------ECPKPLKKGATKLR--DQQF 181
           Y I         + +D      D     ++G         E     +      R  +Q+ 
Sbjct: 453 YNIP-----KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 182 EVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKA 241
             DS    +   I    +Q+ K Y+  +       E  +      L +   EE     K 
Sbjct: 508 RHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKYERLVNAILDFLPK--IEENLICSKY 564

Query: 242 EEVAQLAQMKSNDEIRKLRENLERAQR 268
            ++ ++A M  ++ I    E  ++ QR
Sbjct: 565 TDLLRIALMAEDEAI--FEEAHKQVQR 589

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 23/145 (15%)

Query: 148  DELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYED 207
             ELE   +  E    +E  K  +K   +  D   ++  L+     +I+ELK Q+ K  E+
Sbjct: 1042 SELEVRLKKEEKSR-QELEKIKRKLEGESSDLHEQIAELQ----AQIAELKAQLAKK-EE 1095

Query: 208  QLKRITEMVES----------KLKETTTR---LEQQLAEEQAARLKAEEVAQLAQMKSND 254
            +L+     +E           K++E  +    L++ L  E+AAR KAE+  Q   +   +
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK--QKRDLS--E 1151

Query: 255  EIRKLRENLERAQRETEELRKQAEK 279
            E+  L+  LE     T   ++    
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRGS 1176

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 191 KREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQM 250
           KRE+ +LK +      ++ K++   +E+K+ +    L++++ E+        E     ++
Sbjct: 903 KRELKKLKIEARS--VERYKKLHIGLENKIMQ----LQRKIDEQNKEYKSLLEKMNNLEI 956

Query: 251 KSNDEIRKLRENLERAQRETEELRKQAEK 279
             + E  KLR ++ER +   EE +    +
Sbjct: 957 TYSTETEKLRSDVERLRMSEEEAKNATNR 985

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 175  KLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVE--SKLKETTTRLEQQLA 232
            KL+ +   V+  K       +++ + + +  ++Q K    ++E  + L+ T +   ++L 
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIMQ-LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966

Query: 233  EEQAARLKAEE---VAQLAQMKS-NDEIRKLRENLERAQRETEELRKQAEK 279
             +   RL+  E        ++ S  +EI KLR+ L + Q E + + + A+K
Sbjct: 967  SDVE-RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 14/137 (10%)

Query: 148  DELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSK---REISELKEQMH-- 202
              L +    LE     E  K L+    +LR  + E  +          EI++L++++H  
Sbjct: 945  KSLLEKMNNLEITYSTETEK-LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003

Query: 203  ----KSYEDQLKRITEMVE---SKLKETTTRLEQQLAE-EQAARLKAEEVAQLAQMKSND 254
                K+ E+   +     E   S+LKE  T L+ +  E  +    +A+E+ +  + K  +
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE 1063

Query: 255  EIRKLRENLERAQRETE 271
            E ++L  +L   +   +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 163 RECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKE 222
            + P+ ++K   + R +  E+D+    SK    E +E+  K  E+  +R +E VE K K 
Sbjct: 81  TQEPESIRKWREEQRKRLQELDAA---SKVMEQEWREKAKKDLEEWNQRQSEQVE-KNKI 136

Query: 223 TTTRLEQQLAEEQ 235
                ++   ++ 
Sbjct: 137 NNRIADKAFYQQP 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.92
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.92
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.74
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.72
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.72
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.7
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.69
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.68
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.65
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.65
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.64
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.64
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.63
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.62
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.62
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.62
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.61
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.61
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.59
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.59
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.59
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.59
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.58
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.58
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.58
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.58
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.58
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.58
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.58
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.57
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.57
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.57
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.57
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.56
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.56
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.56
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.56
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.56
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.56
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.56
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.56
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.56
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.56
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.56
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.56
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.55
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.55
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.55
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.55
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.55
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.55
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.55
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.55
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.55
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.54
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.54
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.54
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.54
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.54
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.54
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.54
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.53
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.53
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.53
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.53
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.53
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.53
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.53
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.53
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.53
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.53
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.53
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.53
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.53
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.52
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.52
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.52
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.52
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.52
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.52
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.52
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.52
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.52
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.52
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.51
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.51
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.51
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.51
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.51
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.51
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.51
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.51
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.5
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.5
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.5
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.5
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.5
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.5
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.49
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.49
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.49
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.49
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.49
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.49
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.49
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.49
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.49
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.49
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.49
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.49
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.49
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.49
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.49
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.48
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.48
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.48
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.48
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.48
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.48
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.48
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.48
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.48
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.48
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.47
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.47
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.47
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.47
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.46
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.46
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.46
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.46
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.46
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.46
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.46
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.46
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.45
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.45
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.45
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.45
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.45
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.45
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.44
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.44
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.44
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.44
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.43
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.42
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.42
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.42
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.42
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.42
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.41
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.41
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.41
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.41
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.4
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.4
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.4
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.39
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.39
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.38
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.38
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.38
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.38
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.37
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.37
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.36
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.36
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.36
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.36
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.36
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.36
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.35
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.35
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.34
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.01
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.32
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.32
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.3
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.29
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.28
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.28
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.27
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.24
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.24
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.24
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.15
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.15
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.1
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.09
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.07
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.06
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.03
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.03
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.01
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.01
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.01
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.99
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.99
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.98
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.98
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.98
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.97
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.96
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.93
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.92
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.91
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.91
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.89
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.86
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.86
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.86
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.84
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.82
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.82
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.81
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.8
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.79
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.79
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.78
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.77
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.77
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.77
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.76
2og2_A	359	Putative signal recognition particle receptor; nuc	98.75
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.71
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.71
1g6h_A	257	High-affinity branched-chain amino acid transport	98.7
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.69
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.68
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.68
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.68
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.67
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.67
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.67
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.66
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.65
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.65
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.64
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.62
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.62
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.61
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.6
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.6
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.59
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.59
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.58
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.56
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.56
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.54
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.53
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.52
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.52
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.52
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.51
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.5
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.47
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.47
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.46
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.43
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.41
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.39
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.39
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.38
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.38
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.36
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.35
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.33
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.33
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.33
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.32
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.32
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.3
2xxa_A	433	Signal recognition particle protein; protein trans	98.27
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.25
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.25
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.25
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.2
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.19
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.18
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.17
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.15
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.14
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.1
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.06
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.05
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.04
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.03
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.01
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.99
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.98
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.97
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.96
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.96
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.95
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.93
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.91
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.89
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.89
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.88
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.87
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.85
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.85
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.84
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.83
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.82
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.8
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.8
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.79
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.78
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.78
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.78
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.74
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.71
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.71
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.7
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.69
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.69
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.67
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.66
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.66
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.66
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.65
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.64
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.63
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.62
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.61
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.6
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.56
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.56
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.54
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.54
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.53
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.52
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.45
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.45
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.44
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.43
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.41
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.37
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.36
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.35
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.31
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.29
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.28
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.26
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.26
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.25
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.25
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.25
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.22
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.22
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.2
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.19
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.19
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.19
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.19
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.16
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.16
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.1
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.1
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.1
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.06
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.05
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.04
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.03
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.03
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.99
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.95
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.93
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.93
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.92
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.91
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.87
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.86
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.86
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.85
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.85
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.84
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.83
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.82
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.82
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.81
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.8
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.79
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.77
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.74
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.73
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.73
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.72
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.7
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.7
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.65
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.64
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.63
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.62
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.61
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.6
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.6
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.59
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.59
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.58
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.55
1via_A	175	Shikimate kinase; structural genomics, transferase	96.52
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.52
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.51
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.5
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.49
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.47
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.47
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.46
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.45
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.43
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.43
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.42
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.42
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.42
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.42
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.41
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.4
3end_A	307	Light-independent protochlorophyllide reductase ir	96.39
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.39
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.39
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.38
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.36
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.35
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.35
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.31
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.31
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.31
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.3
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.3
3ice_A	422	Transcription termination factor RHO; transcriptio	96.26
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.26
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.26
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.24
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.23
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.23
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.21
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.19
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.18
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.16
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.15
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.15
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.14
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.14
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.13
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.11
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.08
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.08
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.08
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.07
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.03
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.01
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.01
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.0
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.96
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.93
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.89
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.89
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.88
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.87
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.87
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.86
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.85
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.84
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.83
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.81
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.77
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.77
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.74
3bos_A	242	Putative DNA replication factor; P-loop containing	95.73
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.72
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.71
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.7
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.65
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.63
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.62
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.62
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.6

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.92  E-value=5.1e-24  Score=177.52  Aligned_cols=142  Identities=41%  Similarity=0.728  Sum_probs=104.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ....+|+|+|++|+|||||+|+|+|...+..+....++|..+......+ .+..++||||||+.++..........+..+
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999999988666555556777777777777 788999999999998877777778889999


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                      +..+++++|++++|+|++ +++..+..++..+...++.....|+++|+||+|....  ..+.+++.
T Consensus       106 ~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~  168 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR  168 (239)
T ss_dssp             HHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred             HHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHH
Confidence            988889999999999997 7777888888888887776555689999999998866  55665554

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=1.4e-21  Score=164.74  Aligned_cols=133  Identities=33%  Similarity=0.586  Sum_probs=107.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+|+|++|+|||||+|.|+|...+.....+.++|..+......+ .+..+.||||||+.++........+.+..++
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~   99 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCY   99 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence            348999999999999999999999887665554444666666666666 7889999999999987766666666777777


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe-CCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n-k~D~~~~  152 (285)
                      ..+++++|++++|+|++ +++..+...+..+...++.....|+++++| |+|....
T Consensus       100 ~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A          100 LLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred             HhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence            77889999999999998 688888888899998887544446777766 9998743

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.79  E-value=2.7e-18  Score=144.82  Aligned_cols=142  Identities=22%  Similarity=0.319  Sum_probs=107.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+++|++|+|||||+|+|+|........ ..+.|.........+ .+..++|+||||+.++........+.+.+++
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            34899999999999999999999987532222 233455555555556 7889999999999887665555555566554


Q ss_pred             hhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214           98 GMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~  163 (285)
                        ..+++|++++|++++ .+++..+..++..+...++...+.|+++|+||+|....+...+++++..
T Consensus       113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~  177 (262)
T 3def_A          113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK  177 (262)
T ss_dssp             --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred             --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence              245789999998874 3578888899999999988776779999999999865544777777764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=4.2e-18  Score=144.24  Aligned_cols=140  Identities=24%  Similarity=0.334  Sum_probs=102.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|+|+|........ ..+.|..+....... .+..++||||||+.++..........+..++ 
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~-  115 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL-  115 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT-
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh-
Confidence            4899999999999999999999887533222 223344444444444 6788999999999876544444444444432 


Q ss_pred             hccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214           99 MAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                       ..+++|+++||++++. +++..+..++..+...++...+.|+++|+||+|........+++++.
T Consensus       116 -~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~  179 (270)
T 1h65_A          116 -LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS  179 (270)
T ss_dssp             -TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred             -hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence             2457899999988743 68888888999998888876556999999999987653346777765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.74  E-value=7.3e-17  Score=138.47  Aligned_cols=133  Identities=22%  Similarity=0.208  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|.|+|........ ..++|.......... .+..+.++||||+.++.   ..+...+......
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~~   82 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVYE   82 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHHH
Confidence            589999999999999999999987532211 122333322233333 67889999999998753   2445556666777


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhc-HHHHhh
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET-LEDYLG  162 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~-l~~~l~  162 (285)
                      ++..+|++++|+|++++++..+...+..+...++ .  .|+++++||+|....  .. +.+.+.
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~  141 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYH  141 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHH
T ss_pred             HHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHH
Confidence            7899999999999987888887766666655422 2  399999999998765  33 444444

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.72  E-value=7.8e-17  Score=132.13  Aligned_cols=131  Identities=13%  Similarity=0.200  Sum_probs=90.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEIV   94 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~~~   94 (285)
                      ....+|+|+|.+|+|||||+|.|++...........++|....+.......+..+.||||||+.+.......  ....+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            344899999999999999999999986321222334556665555554225678999999998765433221  122233


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+......+|++++|+|+.++++..+..++..+... +    .|+++|+||+|....
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-~----~p~i~v~nK~Dl~~~  159 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-G----KPIHSLLTKCDKLTR  159 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-C----CCEEEEEECGGGSCH
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEeccccCCh
Confidence            2333335668999999999878888888777776552 2    289999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.72  E-value=6.8e-17  Score=139.25  Aligned_cols=124  Identities=20%  Similarity=0.337  Sum_probs=93.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...|+++|++|+|||||+|.|+|...... ....++|.......... . +..++++||||+.++. ........+....
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~~~~~~   86 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHSMVEIA   86 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHHHHHHH
Confidence            35999999999999999999999875322 22334455544444555 5 7889999999998764 2244566777777


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ..++..+|++++|+|++++.+..+... +..+...   .  .|+++|+||+|..
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~--~pvilV~NK~Dl~  135 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---N--KPVIVVINKIDKI  135 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---C--CCEEEEEECGGGS
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---C--CCEEEEEECccCC
Confidence            777788999999999987888888766 5555441   2  3899999999987

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.70  E-value=9.2e-16  Score=122.93  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=79.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~   95 (285)
                      ...+|+|+|++|+|||||+|.|++...........+.|.....+.  .  +..+.++||||+.++......  ....+..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            348999999999999999999998763222222233444433322  2  447999999998876443221  1122222


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+......+|++++|+|+.++.+..+...+.++...   .  .|+++|+||+|....
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~  149 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY---G--IPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh
Confidence            222223456999999999878888887666666542   2  289999999998765

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.69  E-value=5.4e-16  Score=131.50  Aligned_cols=131  Identities=22%  Similarity=0.280  Sum_probs=78.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC----CCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcH-
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSE-   87 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~-   87 (285)
                      .|...+|+|+|.+|+|||||+|+|++...+.....    ....|+.......... .+  ..++|+||||+.++..... 
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            34458999999999999999999999887655421    0122222223333221 23  3799999999976533221 


Q ss_pred             --HHHHHH----HHHHhh---------ccCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           88 --FVGKEI----VKCIGM---------AKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        88 --~~~~~~----~~~~~~---------~~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                        .+...+    ..++..         ....+|+++|+++. +.++...+...+..+..    .  .|+++|+||+|...
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~--~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLT  158 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----T--SCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----c--CCEEEEEeccCCCC
Confidence              122111    222221         12247899999976 44688888777766654    2  29999999999876


Q ss_pred             C
Q 023214          152 D  152 (285)
Q Consensus       152 ~  152 (285)
                      .
T Consensus       159 ~  159 (274)
T 3t5d_A          159 P  159 (274)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.68  E-value=4.1e-16  Score=122.92  Aligned_cols=124  Identities=23%  Similarity=0.234  Sum_probs=83.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH-HHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK-EIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~~~   98 (285)
                      .+|+|+|++|+|||||+|.|++....... ...+.|.......+.+ .+..+.++||||+.....   .... .+... .
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~-~   78 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIERA-W   78 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHHH-H
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHHH-H
Confidence            79999999999999999999987642111 1223344333344555 677899999999975421   1111 12222 2


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|++++.+.....++..+.......  .|+++|.||+|+..
T Consensus        79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITG  129 (172)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHC
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCc
Confidence            3356789999999997666655666666666654323  38999999999753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.65  E-value=1.7e-15  Score=117.31  Aligned_cols=122  Identities=27%  Similarity=0.293  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+++|++|+|||||+|.+++...... ....+.+.......... .+..+.++||||.......    ...+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKW----EKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSC----CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccch----HHHHHHHHHH
Confidence            6899999999999999999998763211 11223444444455555 6778999999998864321    2223333444


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|+.++++..+......+... +    .|+++|.||+|....
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~----~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-G----KPVILVATKVDDPKH  123 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-T----CCEEEEEECCCSGGG
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-C----CCEEEEEECcccccc
Confidence            57788999999999877888776666666552 2    289999999998654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.65  E-value=8.4e-15  Score=117.04  Aligned_cols=125  Identities=18%  Similarity=0.184  Sum_probs=84.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~   95 (285)
                      ...+|+++|++|+|||||+|.|++.... ......+.|.......    .+..+.++||||+........  .....+..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence            3479999999999999999999988732 2222233444332221    255789999999875433221  11223333


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+......+|++++|+|+..+.+..+...+.++... +    .|+++|+||+|....
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~  148 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKM  148 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCh
Confidence            333334667999999999878888777777776654 2    289999999998755

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.64  E-value=3.5e-15  Score=117.62  Aligned_cols=114  Identities=18%  Similarity=0.269  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.|++........  .+.+.........+ .+..+.++||||...+....           ..
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~-----------~~   74 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMR-----------AR   74 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSC-----------CS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHH-----------HH
Confidence            799999999999999999999876533221  22333333444555 67889999999987654322           24


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|++++........+..+.   ...  .|+++|+||+|....
T Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           75 GAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEA  122 (178)
T ss_dssp             SCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCS
T ss_pred             HHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcC
Confidence            467889999999997676666655554432   222  389999999998764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=9.6e-16  Score=136.13  Aligned_cols=138  Identities=15%  Similarity=0.192  Sum_probs=78.9

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC--CCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCC
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDF   82 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~   82 (285)
                      ++++++.+..|..++++|+|+||+|||||+|+|+|.........  ..+.+.....+.... .+  ..++++|+||+...
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~  108 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQ  108 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-Cccccccchhhhhhhhhc
Confidence            77899999999555599999999999999999999853211111  112222211111111 12  36899999999864


Q ss_pred             CCCcHH--------HHHHHHHHHhhc---------cCC--ccE-EEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEE
Q 023214           83 SAGSEF--------VGKEIVKCIGMA---------KDG--IHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        83 ~~~~~~--------~~~~~~~~~~~~---------~~~--~~~-~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      . ....        +...+..++...         .+.  +|+ +++++|++++++..+...+..+.    ..+  |+|+
T Consensus       109 ~-~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~~--~vI~  181 (427)
T 2qag_B          109 I-NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SKV--NIIP  181 (427)
T ss_dssp             C-CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SCS--EEEE
T ss_pred             c-ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hCC--CEEE
Confidence            2 2111        112222222211         112  345 44566777788888865555543    233  9999


Q ss_pred             EEeCCCCCCC
Q 023214          143 VFTGGDELED  152 (285)
Q Consensus       143 l~nk~D~~~~  152 (285)
                      |+||+|.++.
T Consensus       182 Vi~KtD~Lt~  191 (427)
T 2qag_B          182 IIAKADAISK  191 (427)
T ss_dssp             EESCGGGSCH
T ss_pred             EEcchhccch
Confidence            9999999876

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.63  E-value=4.2e-15  Score=130.89  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=81.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC--cc------------------------------------------
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG--VT------------------------------------------   55 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~--~t------------------------------------------   55 (285)
                      ++|+|||++|+|||||+|+|+|...++.+.....  ++                                          
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            5999999999999999999999775444322110  00                                          


Q ss_pred             --------eeEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHH
Q 023214           56 --------STCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL  125 (285)
Q Consensus        56 --------~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l  125 (285)
                              ...-...+.......++||||||+..+..  ........+...+..++..+|++++|+++. ........++
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~~~  193 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSDAI  193 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCHHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHHHH
Confidence                    00000111111245699999999987532  122344556666666678899999998764 2222223445


Q ss_pred             HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          126 HSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       126 ~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++......  ..|+++|+||+|....
T Consensus       194 ~l~~~~~~~--~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          194 KISREVDPS--GDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             HHHHHSCTT--CTTEEEEEECGGGCCT
T ss_pred             HHHHHhccc--CCCEEEEEeCCccCCC
Confidence            555544222  2389999999998864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.62  E-value=1.9e-15  Score=129.77  Aligned_cols=121  Identities=20%  Similarity=0.277  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~~~   98 (285)
                      ..|+|+|++|+|||||+|.|+|....... ...+.|.........+ .+..++++||||+. .+   .......+.....
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~   83 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAAS   83 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHHH
Confidence            58999999999999999999998753221 1223343333333444 67789999999986 21   1122223333345


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|+.+ ++..+...+..+..   ..  .|+++++||+|...
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~---~~--~P~ilvlNK~D~~~  130 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE---GK--APVILAVNKVDNVQ  130 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS---SS--SCEEEEEESTTTCC
T ss_pred             HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh---cC--CCEEEEEECcccCc
Confidence            66788999999999976 99888766655442   12  28999999999876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.62  E-value=3.5e-15  Score=134.70  Aligned_cols=122  Identities=22%  Similarity=0.285  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+|||.+|+|||||+|.|+|...... ....++|....+....+ .+..+.||||||+....  .......+......
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            5899999999999999999998864222 22356777777777888 78899999999987431  11122344455556


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ++..+|++++|+|+..+++..+.....++... +    .|+++|+||+|..
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~  123 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENL  123 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSH
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCc
Confidence            67889999999999878998887666666553 2    2899999999975

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.62  E-value=7.4e-15  Score=115.85  Aligned_cols=117  Identities=21%  Similarity=0.227  Sum_probs=77.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...+|+++|++|+|||||+|.|++.....  ....+.+.........+ .+  ..+.++||||........         
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------   75 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTIT---------   75 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCC---------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhH---------
Confidence            44899999999999999999999876532  22233444444444444 44  568999999976543322         


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                        ..++..+|++++|+|++++.+... ..++..+..... .  .|+++|+||+|...
T Consensus        76 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~  127 (181)
T 3tw8_B           76 --STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-D--VCRILVGNKNDDPE  127 (181)
T ss_dssp             --GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-T--SEEEEEEECTTCGG
T ss_pred             --HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCCCch
Confidence              234678899999999975433333 234444544432 2  39999999999764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.61  E-value=9.7e-15  Score=120.25  Aligned_cols=126  Identities=18%  Similarity=0.175  Sum_probs=77.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+|+|++|+|||||+|.|++......  ...+.|.......... .+..+.|+||||+.+.......... . ..+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~-~-~~~~  103 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE-M-TTIT  103 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH-H-HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH-H-HHHH
Confidence            48999999999999999999998874322  1223444444445555 5678999999999754221111100 1 1111


Q ss_pred             hccCCccEEEEEEeCCCCCCHH---HHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQE---EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|++++.+..   ...++..+...+.   ..|+++|+||+|....
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~  157 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNM  157 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC-
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCc
Confidence            2246779999999997664432   2333443433211   2389999999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.61  E-value=8.2e-15  Score=122.86  Aligned_cols=121  Identities=19%  Similarity=0.244  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~   97 (285)
                      ++|+|+|.+|+|||||+|.|+|.....+.  ..++|+........+ .+..+.|+||||+.++.....  .....+...+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            58999999999999999999998743332  346677766777776 678999999999987643210  1222233322


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .. ...+|++++|+|+++ .    ...+.+........  .|+++++||+|...
T Consensus        79 ~~-~~~~d~vi~VvDas~-~----~~~~~l~~~l~~~~--~pvilv~NK~Dl~~  124 (256)
T 3iby_A           79 VI-DLEYDCIINVIDACH-L----ERHLYLTSQLFELG--KPVVVALNMMDIAE  124 (256)
T ss_dssp             HH-HSCCSEEEEEEEGGG-H----HHHHHHHHHHTTSC--SCEEEEEECHHHHH
T ss_pred             Hh-hCCCCEEEEEeeCCC-c----hhHHHHHHHHHHcC--CCEEEEEEChhcCC
Confidence            11 267899999999973 1    12222333332222  39999999999763

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.59  E-value=9.1e-15  Score=115.49  Aligned_cols=119  Identities=22%  Similarity=0.221  Sum_probs=76.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+++|++|+|||||+|.+++...........+.+..  .....+. ....+.++||||...+...           .
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~   78 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQERYHSL-----------A   78 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE--EEEEEETTEEEEEEEEECCCSGGGGGG-----------T
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE--EEEEEECCEEEEEEEEeCCCChhhhhh-----------h
Confidence            379999999999999999999987653322222222222  2223331 1346899999996543211           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|+.++.+... ..++..+.......  .|+++|+||+|....
T Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~  132 (181)
T 2efe_B           79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDA  132 (181)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc
Confidence            223567899999999975544222 44555555543323  389999999998643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.59  E-value=4.6e-15  Score=115.84  Aligned_cols=117  Identities=18%  Similarity=0.142  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||+|.+++...........+.+..  .....+. ....+.++||||+..+..           ...
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~-----------~~~   73 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLERFRA-----------LAP   73 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGGGGG-----------GTH
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchhhhc-----------ccH
Confidence            79999999999999999999987743222222222222  2223331 135689999999854321           111


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+..+|++++|+|++++.+... ..++..+.....+.  .|+++|.||+|...
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~  125 (170)
T 1z0j_A           74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTD  125 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGG
T ss_pred             hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCcccc
Confidence            23567899999999975544333 34455555542333  38999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.59  E-value=3.2e-15  Score=116.67  Aligned_cols=118  Identities=20%  Similarity=0.218  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||+|.+++..........  .+........... ....+.++||||...+..           ...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~~   70 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPT--IGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-----------LAP   70 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC--SSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-----------GHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEEEECCEEEEEEEEECCCChhhhh-----------hhh
Confidence            69999999999999999999977643222222  2222222333331 134689999999654211           122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|++++.+... ..++..+........  |+++++||+|....
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~  123 (170)
T 1ek0_A           71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI--IIALVGNKIDXLQE  123 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGS
T ss_pred             hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCCcccc
Confidence            33567899999999975533333 234445554433333  89999999998643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.59  E-value=8e-16  Score=139.56  Aligned_cols=123  Identities=23%  Similarity=0.184  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+|+|++|+|||||+|.|+|...... ....++|....+....+ .+..+.|+||||+...   .......+......
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQAEI   98 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHHHh
Confidence            6999999999999999999998764322 22346677666666666 6788999999998732   22234556666666


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|+..+++..+...+.++...     ..|+++++||+|....
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~~~  146 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAADEEVAKILYRT-----KKPVVLAVNKLDNTEM  146 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-----CSCEEEEEECC-----
T ss_pred             hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-----CCCEEEEEECccchhh
Confidence            67788999999999878999888777766541     2389999999997643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.58  E-value=1.4e-14  Score=115.63  Aligned_cols=118  Identities=14%  Similarity=0.120  Sum_probs=76.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+|+|++|+|||||+|.|++...........+.+  ......... ....+.++||||...+....           
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----------   88 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTVYRHDKRIKLQIWDTAGQERYRTIT-----------   88 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE--EEEEEEEETTEEEEEEEEECCSCCSSCCSG-----------
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE--EEEEEEEECCeEEEEEEEeCCCcHHHhhhH-----------
Confidence            4799999999999999999999876432222222222  222223331 13468999999987653322           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|...
T Consensus        89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~  141 (189)
T 2gf9_A           89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLED  141 (189)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccc
Confidence            244678999999999974433322 24445555443222  39999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.58  E-value=3.2e-14  Score=113.82  Aligned_cols=124  Identities=10%  Similarity=0.010  Sum_probs=76.0

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   86 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~   86 (285)
                      .+++++..+.   .+|+++|++|+|||||++.+++.....  .   .+|.........+ .+..+.++||||...+... 
T Consensus        14 l~~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-   83 (190)
T 1m2o_B           14 LASLGLWNKH---GKLLFLGLDNAGKTTLLHMLKNDRLAT--L---QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRL-   83 (190)
T ss_dssp             -------------CEEEEEESTTSSHHHHHHHHHHSCCCC--C---CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTTS-
T ss_pred             HHHhhccCCc---cEEEEECCCCCCHHHHHHHHhcCCCCc--c---ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHHH-
Confidence            3455555444   599999999999999999999766321  1   1222233445555 6788999999998654321 


Q ss_pred             HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                                ...++..+|++++|+|++++-+.... .++..+.... .....|++++.||+|...
T Consensus        84 ----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           84 ----------WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             ----------GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred             ----------HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcC
Confidence                      12446789999999999755443332 2333332211 112248999999999875

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.58  E-value=1.6e-14  Score=116.85  Aligned_cols=118  Identities=19%  Similarity=0.206  Sum_probs=78.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++.......  ..+.+.........+ .+  ..+.|+||||...+....          
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~----------   74 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTIT----------   74 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHH----------
Confidence            379999999999999999999987643221  122222333333444 33  369999999987654322          


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ..++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|....
T Consensus        75 -~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  128 (206)
T 2bcg_Y           75 -SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDK  128 (206)
T ss_dssp             -GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT
T ss_pred             -HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence             234678899999999975444333 23444554443333  389999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.58  E-value=2.8e-14  Score=114.18  Aligned_cols=119  Identities=20%  Similarity=0.217  Sum_probs=79.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...+|+|+|++|+|||||+|.|++.......  ..+.+.........+ .+  ..+.++||||...+...          
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------   81 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI----------   81 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTT----------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhh----------
Confidence            3479999999999999999999976643221  223344444444444 44  46899999997643221          


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ...++..+|++++|+|+.++.+... ..++..+........  |+++|+||+|....
T Consensus        82 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ilv~nK~Dl~~~  136 (196)
T 3tkl_A           82 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV--NKLLVGNKCDLTTK  136 (196)
T ss_dssp             -HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTTT
T ss_pred             -HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccccc
Confidence             1233577899999999975433222 345555555443333  99999999998654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.58  E-value=5.6e-14  Score=111.62  Aligned_cols=117  Identities=14%  Similarity=0.095  Sum_probs=77.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+++|++|+|||||+|.+++.. +.. .   .+|.........+ .+..+.++||||...           +....
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~-~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~   79 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDT-I---SPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYW   79 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSS-C---CCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCc-c---cccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence            34899999999999999999999876 222 1   2233333445555 678899999999742           12223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|++++.+.... .++..+..... ....|+++|+||+|....
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  134 (186)
T 1ksh_A           80 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA  134 (186)
T ss_dssp             GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC
Confidence            4557889999999999755444332 23333322110 112499999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.58  E-value=9.5e-15  Score=114.13  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.+++.........  +.+.......... .+  ..+.++||||...+.           ..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~   71 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHIT--TLGASFLTKKLNI-GGKRVNLAIWDTAGQERFH-----------AL   71 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCC--CCSCEEEEEEEES-SSCEEEEEEEECCCC-----------------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCC--ccceEEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------hh
Confidence            37999999999999999999997764322111  2222222223333 33  358899999975432           12


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....+..+|++++|+|+.++.+... ..++..+........  |+++++||+|...
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~  125 (170)
T 1z08_A           72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEK  125 (170)
T ss_dssp             -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGG
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--eEEEEEECccccc
Confidence            2345778999999999975433332 344555555443333  9999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.58  E-value=1.5e-14  Score=122.50  Aligned_cols=121  Identities=21%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~   97 (285)
                      .+|+++|.+|+|||||+|.|+|.....+  ...++|+........+ .+..+.++||||+.++....  ......+.+.+
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            7999999999999999999999874322  2346677766677776 67889999999998765211  11222333322


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      . ....+|++++|+|+++ . .....++..+... +    .|+++++||+|...
T Consensus        81 ~-~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A           81 I-LSGDADLLINVVDASN-L-ERNLYLTLQLLEL-G----IPCIVALNMLDIAE  126 (274)
T ss_dssp             H-HHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-T----CCEEEEEECHHHHH
T ss_pred             H-hhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-C----CCEEEEEECccchh
Confidence            1 2368899999999873 2 2233344444443 2    29999999999753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.57  E-value=8.8e-15  Score=114.23  Aligned_cols=117  Identities=14%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.+++........  .+.+.........+ .+  ..+.++||||...+.....         
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~---------   70 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITT---------   70 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCH---------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHH---------
Confidence            3799999999999999999999776422211  22222222333444 33  4689999999765433221         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                        ..+..+|++++|+|++++.+... ..++..+........  |+++++||+|...
T Consensus        71 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~  122 (170)
T 1g16_A           71 --AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA--QLLLVGNKSDMET  122 (170)
T ss_dssp             --HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTT
T ss_pred             --HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCCc
Confidence              23567899999999974433322 345555555443333  9999999999843

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.57  E-value=7.3e-14  Score=109.14  Aligned_cols=115  Identities=14%  Similarity=0.068  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.+++.....     ..+|.........+ .+..+.++||||...+..           ....
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~-----------~~~~   70 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSIRP-----------YWRC   70 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGGGG-----------GGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChhhhH-----------HHHH
Confidence            799999999999999999998765421     12233333445555 578899999999764321           1234


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|++++-+.... .++..+..... ....|+++|+||+|....
T Consensus        71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC
Confidence            57789999999999766544332 22222222110 122499999999998764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.57  E-value=5.6e-14  Score=121.26  Aligned_cols=129  Identities=15%  Similarity=0.166  Sum_probs=75.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC--CCc----ceeE----------------------------------
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS--SGV----TSTC----------------------------------   58 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~--~~~----t~~~----------------------------------   58 (285)
                      .++|+|+|++|+|||||+|+|+|...++.+...  ..+    +...                                  
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence            379999999999999999999998764332210  000    0000                                  


Q ss_pred             -----------------EEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEEEEEeC-CCCCC
Q 023214           59 -----------------EMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFS  118 (285)
Q Consensus        59 -----------------~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~~~-~~~~~  118 (285)
                                       ....+....+..++||||||+.....  ........+......++..+|++++|+++ +..++
T Consensus       104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~  183 (315)
T 1jwy_B          104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (315)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence                             00001222346799999999975221  01122334445555566788999999986 43444


Q ss_pred             HHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          119 QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       119 ~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+ ...+..+..     ...|+++|+||+|....
T Consensus       184 ~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~  213 (315)
T 1jwy_B          184 NSDALQLAKEVDP-----EGKRTIGVITKLDLMDK  213 (315)
T ss_dssp             TCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred             hhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence            333 233333321     12389999999998865

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.57  E-value=7.8e-15  Score=114.43  Aligned_cols=118  Identities=19%  Similarity=0.198  Sum_probs=74.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+++|++|+|||||+|.+++...........+.+.  ........ .+..+.++||||...+..           ..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~   72 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYHS-----------LA   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGGG-----------GH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhhh-----------hh
Confidence            37999999999999999999997654322112222222  22223331 145689999999754311           11


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|++++.+... ..++..+.....+..  |++++.||+|...
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~Dl~~  125 (170)
T 1r2q_A           73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLAN  125 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGG
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCcc
Confidence            233567899999999975533322 344445554433333  8999999999754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.56  E-value=2.9e-14  Score=120.61  Aligned_cols=119  Identities=21%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|.|+|.... .+ ...++|.........+ .+..+.++||||+.++......  ..+...+ .
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~-~   77 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQH-VG-NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARNF-I   77 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCEE-EE-ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHHH-H
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcc-cC-CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHHh-h
Confidence            79999999999999999999998752 22 2345666666666766 7788999999999876543321  2222222 1


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ....+|++++|+|+++.  .....++..+... +.   .|+++++||+|..
T Consensus        78 ~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~  122 (271)
T 3k53_A           78 LDGNADVIVDIVDSTCL--MRNLFLTLELFEM-EV---KNIILVLNKFDLL  122 (271)
T ss_dssp             HTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT-TC---CSEEEEEECHHHH
T ss_pred             hccCCcEEEEEecCCcc--hhhHHHHHHHHhc-CC---CCEEEEEEChhcC
Confidence            23678999999998732  2222333333332 21   3899999999954

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.56  E-value=3.6e-15  Score=134.52  Aligned_cols=122  Identities=23%  Similarity=0.196  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+|+|++|+|||||+|.|+|...... ....++|....+....+ .+..+.|+||||+....   ......+......
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            6899999999999999999998764221 22346676666666666 67889999999987321   1144555555556


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++..+|++++|+|+.++++..+......+..     ...|+++++||+|...
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence            6778899999999987889887665555542     1239999999999764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.56  E-value=4.9e-14  Score=113.08  Aligned_cols=121  Identities=14%  Similarity=0.084  Sum_probs=77.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ....+|+|+|++|+|||||++.|++.........   .|.......+.. .+..+.++||||...+..           .
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~---~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~   79 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---ATVGYNVETFEK-GRVAFTVFDMGGAKKFRG-----------L   79 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCC---CCSSEEEEEEEE-TTEEEEEEEECCSGGGGG-----------G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc---cccceeEEEEEe-CCEEEEEEECCCCHhHHH-----------H
Confidence            3448999999999999999999998775331211   222333444444 678899999999864321           2


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc------cccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGK------KIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~------~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|+.++-+.... .++..+......      ....|+++|+||+|....
T Consensus        80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            23457889999999999755443332 333333221000      012399999999998765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.56  E-value=1.6e-14  Score=116.44  Aligned_cols=125  Identities=14%  Similarity=0.064  Sum_probs=75.7

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      +.+++++....   .+|+++|++|+|||||++.+++......  .   +|.........+ .+..+.++||||...+.. 
T Consensus        15 ~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~---~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-   84 (198)
T 1f6b_A           15 VLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKDDRLGQH--V---PTLHPTSEELTI-AGMTFTTFDLGGHIQARR-   84 (198)
T ss_dssp             HHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-
T ss_pred             HHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhcCCCCcc--C---CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-
Confidence            34445555444   5999999999999999999998663211  1   122222344555 568899999999765432 


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                                ....++..+|++++|+|+.++-+... ..++..+.... .....|+++|.||+|...
T Consensus        85 ----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           85 ----------VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE  140 (198)
T ss_dssp             ----------GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT
T ss_pred             ----------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccc
Confidence                      12234678899999999975544333 22333332211 112248999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.56  E-value=3.8e-14  Score=113.11  Aligned_cols=120  Identities=14%  Similarity=0.055  Sum_probs=78.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+++|++|+|||||+|.|++...+....   ..|.........+ .+..+.++||||...+..           ..
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~~   84 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRN-----------LW   84 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTGG-----------GG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHHH-----------HH
Confidence            34899999999999999999999877333322   2233344455555 578899999999765421           12


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|....
T Consensus        85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            244677899999999974432222 1333333332110 022499999999998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.56  E-value=5.6e-15  Score=133.29  Aligned_cols=127  Identities=20%  Similarity=0.196  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|.|+|....... ...++|.........+ .+..+.||||||+.+.....+.+.........
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            379999999999999999999998743221 1234555554555666 67889999999986543211110000000011


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|++++.+..+..++..+... +    .|+++++||+|....
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~  301 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDK  301 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCC
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-C----CcEEEEEECccCCCc
Confidence            234567999999999888998888776666542 2    289999999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.56  E-value=8.6e-14  Score=116.78  Aligned_cols=118  Identities=23%  Similarity=0.273  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|.|+|.......  ..++|+......... .+..+.|+||||..++.....  ...+...+..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~~   80 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYLL   80 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHHh
Confidence            78999999999999999999998754322  236677666666666 678899999999987654321  1222222211


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                       ...+|++++|+|+++ +.. ...++..+.   ...  .|+++++||+|..
T Consensus        81 -~~~~d~ii~V~D~t~-~~~-~~~~~~~l~---~~~--~pvilv~NK~Dl~  123 (258)
T 3a1s_A           81 -KGDADLVILVADSVN-PEQ-SLYLLLEIL---EME--KKVILAMTAIDEA  123 (258)
T ss_dssp             -HSCCSEEEEEEETTS-CHH-HHHHHHHHH---TTT--CCEEEEEECHHHH
T ss_pred             -hcCCCEEEEEeCCCc-hhh-HHHHHHHHH---hcC--CCEEEEEECcCCC
Confidence             157899999999973 321 222333332   222  3999999999975

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=116.69  Aligned_cols=118  Identities=19%  Similarity=0.183  Sum_probs=73.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+|+|++|+|||||+|.|++...........+  ........... .+..+.++||||...+....           
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-----------   91 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG--VEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT-----------   91 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS--EEEEEEEEEETTEEEEEEEEEESCCCTTCTTH-----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCCchhhhhhh-----------
Confidence            47999999999999999999998764322221112  22222222221 23568999999987643211           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|+.++.+... ..++..+......  ..|+++|+||+|...
T Consensus        92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~  144 (193)
T 2oil_A           92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQ  144 (193)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGG
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCccc
Confidence            123567899999999974433222 2334444332222  248999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.56  E-value=2.3e-14  Score=127.65  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CCcceeEEEEEEEe---eCCceEEEEeCCCCCCCCCCc---HH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGS---EF   88 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~---~~   88 (285)
                      ..+|+|+|+||+|||||+|+|+|...+..+...    ...|..........   .....++++||||+.......   ..
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            367899999999999999999998764333110    11122211111111   112368999999998642111   11


Q ss_pred             HHHHHHHHHh-----------hcc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           89 VGKEIVKCIG-----------MAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        89 ~~~~~~~~~~-----------~~~--~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +...+...+.           ..+  +.+|+++|++.++ +.+++.+..++..+.    ..+  |+|+|+||+|....
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v--~iIlVinK~Dll~~  182 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKV--NIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTS--EEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccC--cEEEEEEcccCccH
Confidence            1111111111           112  3356788888775 578888866665553    223  99999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.56  E-value=2.2e-14  Score=115.74  Aligned_cols=118  Identities=12%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+|+|++|+|||||+|.|++...........+  ........... ....+.++||||...+           .....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~~~   75 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTITT   75 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--eeEEEEEEEECCeEEEEEEEECCCchhh-----------cchHH
Confidence            7999999999999999999998774322222222  22222233331 1356899999997532           12234


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|....
T Consensus        76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  128 (203)
T 1zbd_A           76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDE  128 (203)
T ss_dssp             TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTS
T ss_pred             HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcc
Confidence            55678899999999975433222 23444454433223  399999999998653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=1.4e-14  Score=116.06  Aligned_cols=118  Identities=19%  Similarity=0.130  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+|+|++|+|||||+|.|++...........+.+...  ...... ....+.++||||...+...           .
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~   89 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT--KTVPCGNELHKFLIWDTAGQERFHSL-----------A   89 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEE--EEEECSSSEEEEEEEEECCSGGGGGG-----------T
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEE--EEEEeCCEEEEEEEEcCCCchhhHhh-----------h
Confidence            4799999999999999999999876422212222222222  222221 2456999999997543211           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|...
T Consensus        90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~  142 (192)
T 2fg5_A           90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSD  142 (192)
T ss_dssp             HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            123567899999999975544333 34455555543223  39999999999863

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=4.3e-14  Score=111.50  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||+|.+++........ ..+.+.......... .+  ..+.++||||...+.           ...
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~~~   77 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR-----------SVT   77 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------HHH
Confidence            799999999999999999999876432211 122222222222333 33  368999999975432           123


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|+.++.+... ..++..+.......  .|+++|+||+|....
T Consensus        78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE  131 (180)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcc
Confidence            345677899999999975443332 34455555543333  399999999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.55  E-value=3.6e-14  Score=115.18  Aligned_cols=116  Identities=15%  Similarity=0.191  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++.......  ..+++.........+ .+  ..+.|+||||...+....          
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~----------   86 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTIT----------   86 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCC----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHH----------
Confidence            389999999999999999999976643221  122233333334444 44  568999999976543221          


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                       ..++..+|++++|+|+.++.+... ..++..+........  |+++|+||+|..
T Consensus        87 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~  138 (213)
T 3cph_A           87 -TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA--QLLLVGNKSDME  138 (213)
T ss_dssp             -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCS--EEEEEEECTTCS
T ss_pred             -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCc
Confidence             123567899999999974433222 345555555443333  999999999984

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.55  E-value=6.9e-14  Score=109.19  Aligned_cols=118  Identities=18%  Similarity=0.289  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.|+|...+...  ..+.|.........+ .+..+.++||||...+....  ..+.+...+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~   78 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYII   78 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHHh
Confidence            68999999999999999999987643321  123344433444455 57789999999998754322  11222222211


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                       ...+|++++|+|+.+ . .....++..+...   .  .|+++|+||+|..
T Consensus        79 -~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~~---~--~p~ilv~nK~Dl~  121 (165)
T 2wji_A           79 -NEKPDLVVNIVDATA-L-ERNLYLTLQLMEM---G--ANLLLALNKMDLA  121 (165)
T ss_dssp             -HHCCSEEEEEEETTC-H-HHHHHHHHHHHHT---T--CCEEEEEECHHHH
T ss_pred             -cCCCCEEEEEecCCc-h-hHhHHHHHHHHhc---C--CCEEEEEEchHhc
Confidence             126799999999863 2 1122333333331   2  3899999999964

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.55  E-value=2e-14  Score=112.01  Aligned_cols=117  Identities=21%  Similarity=0.152  Sum_probs=74.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+++|++|+|||||+|.|++........  .+.+............ ...+.++||||...+.....          
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------   72 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITK----------   72 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHH----------
Confidence            3799999999999999999999875422211  1122222223333311 34689999999765432221          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ..+..+|++++|+|++++.+... ..++..+......   .|+++|+||+|...
T Consensus        73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~  123 (168)
T 1z2a_A           73 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLD  123 (168)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGG
T ss_pred             -HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccCc
Confidence             23567899999999975433222 2344445444322   28999999999764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.55  E-value=3.1e-13  Score=128.18  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeEEE--------------------------------------
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEM--------------------------------------   60 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~-t~~~~~--------------------------------------   60 (285)
                      .+|+|+|++|+|||||+|+|+|....+.+..+.+. .....+                                      
T Consensus        70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l  149 (695)
T 2j69_A           70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL  149 (695)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence            89999999999999999999998865544332221 000000                                      


Q ss_pred             -------------EEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHH
Q 023214           61 -------------QRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA  124 (285)
Q Consensus        61 -------------~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~  124 (285)
                                   ..+.++.   ...++||||||+.++..        .......+++.+|++++|+|++++++..+...
T Consensus       150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~  221 (695)
T 2j69_A          150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGERRY  221 (695)
T ss_dssp             HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred             hhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence                         0011100   04699999999875311        11222334567899999999987888887765


Q ss_pred             HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          125 LHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       125 l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.......    ..|+++|+||+|....
T Consensus       222 l~~~l~~~----~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          222 LENYIKGR----GLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHTTTS----CCCEEEEEECGGGGGG
T ss_pred             HHHHHHhh----CCCEEEEEECcccccc
Confidence            54221111    2279999999998643

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.55  E-value=2.2e-14  Score=130.13  Aligned_cols=125  Identities=18%  Similarity=0.229  Sum_probs=67.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|.|++....... ...++|.......+.+ .+..+.|+||||+.++...   +..........
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~---ve~~gi~~~~~  308 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEE---IEHEGIRRSRM  308 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------C
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhH---HHHHHHHHHHh
Confidence            78999999999999999999987532111 1234555555555666 7889999999999764221   11111222345


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|++++.+.........+...+..   .|+++|+||+|....
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~---~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHPA---AKFLTVANKLDRAAN  358 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTT---SEEEEEEECTTSCTT
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCC---CCEEEEEECcCCCCc
Confidence            67889999999999877776322222222222232   399999999998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.55  E-value=8.6e-14  Score=109.99  Aligned_cols=117  Identities=20%  Similarity=0.209  Sum_probs=73.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+++|++|+|||||+|.+++.... ....+   |.... ...... .+  ..+.++||||...+.....        
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~--------   72 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDP---TIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQ--------   72 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCC-SCCCT---TCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCC---CccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHHH--------
Confidence            379999999999999999999965532 22221   11111 222333 44  4578999999886543222        


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                         .++..+|++++|+|+.++-+... ..++..+...+. ....|+++|+||+|....
T Consensus        73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~  126 (181)
T 3t5g_A           73 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHME  126 (181)
T ss_dssp             ---GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT
T ss_pred             ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence               34678899999999974433332 233334434332 112389999999997543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.55  E-value=3.6e-14  Score=112.75  Aligned_cols=118  Identities=21%  Similarity=0.246  Sum_probs=71.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.|++...... ..+  .+.......... .+.  .+.++||||...+.....         
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~---------   70 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDE-YDP--TIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRD---------   70 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCC-CCT--TCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHH---------
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC--CchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHH---------
Confidence            37999999999999999999997664222 111  122222222333 443  377899999775433221         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                        .++..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|....
T Consensus        71 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~  124 (189)
T 4dsu_A           71 --QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR  124 (189)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC
T ss_pred             --HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc
Confidence              12345799999999975433333 234444444322 223489999999998744

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.55  E-value=1.9e-14  Score=113.53  Aligned_cols=121  Identities=14%  Similarity=0.113  Sum_probs=70.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...+|+++|++|+|||||+|.+++.........  +.+.........+.  ....+.++||||...+.           .
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~   73 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKA--TIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-----------S   73 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCC--ccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-----------h
Confidence            348999999999999999999998764322111  11122222333331  13568999999965421           1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC--ccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~--~~~~~~~iil~nk~D~~~  151 (285)
                      .....+..+|++++|+|+.++.+... ..++..+.....  .....|+++|+||+|...
T Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  132 (182)
T 1ky3_A           74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  132 (182)
T ss_dssp             ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence            23355778999999999975433322 234444444332  012238999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.55  E-value=2.4e-14  Score=114.15  Aligned_cols=120  Identities=17%  Similarity=0.132  Sum_probs=75.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...+|+|+|++|+|||||+|.|++.........  +.+.........+ .+  ..+.++||||...+       ..   .
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-------~~---~   85 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEA--TIGVDFRERAVDI-DGERIKIQLWDTAGQERF-------RK---S   85 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCC--CCSCCEEEEEEEE-TTEEEEEEEEECCCSHHH-------HT---T
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--CcceEEEEEEEEE-CCEEEEEEEEECCCchhh-------hh---h
Confidence            347999999999999999999997664322221  2222222333334 33  46899999995421       10   1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....++..+|++++|+|++++.+... ..++..+...+. ....|+++|+||+|...
T Consensus        86 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  141 (189)
T 1z06_A           86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS  141 (189)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred             hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            12233567899999999974433322 344555555431 12238999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.54  E-value=5.5e-14  Score=111.52  Aligned_cols=117  Identities=17%  Similarity=0.185  Sum_probs=76.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.|++......  ...+.+.......... .+  ..+.++||||...+           ...
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~   75 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------RSV   75 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHH
Confidence            37999999999999999999997764322  1122233333333444 33  47899999996532           123


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....+..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|...
T Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~  129 (186)
T 2bme_A           76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDA  129 (186)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            4456788999999999975433322 23444444443333  39999999999753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.54  E-value=1.3e-14  Score=114.30  Aligned_cols=118  Identities=16%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+++|++|+|||||+|.|++...........+.+..  ....... ....+.++||||...+.   .        ..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~---~--------~~   81 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG--TRIIEVSGQKIKLQIWDTAGQERFR---A--------VT   81 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEE--EEEEEETTEEEEEEEEECTTGGGTC---H--------HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCeEEEEEEEECCCChHhh---h--------hH
Confidence            479999999999999999999987643221222222222  2222331 13468999999965431   1        11


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|+.++.+... ..++..+.......  .|+++|+||+|...
T Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~  134 (179)
T 1z0f_A           82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEA  134 (179)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            223456799999999975533332 24444455543333  38999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.54  E-value=1.3e-13  Score=110.66  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC-------------------------------
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-------------------------------   68 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------------------------   68 (285)
                      .+|+|+|++|+|||||+|.|++........  ..+..........+ .+                               
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEET-TC-------------------------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEEe-cCccccccccccccccccccccccccccccccc
Confidence            899999999999999999999876432111  11112222222222 22                               


Q ss_pred             --------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCe
Q 023214           69 --------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDY  139 (285)
Q Consensus        69 --------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~  139 (285)
                              ..+.|+||||...+...           ....+..+|++++|+|+.++.+..+ ..++..+....+    .|
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~p  149 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASI-----------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YI  149 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTT-----------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CE
T ss_pred             cccCccceeEEEEEECCCcHHHHHH-----------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----Cc
Confidence                    67899999997654321           1223567899999999975544333 334445544433    39


Q ss_pred             EEEEEeCCC
Q 023214          140 MIVVFTGGD  148 (285)
Q Consensus       140 ~iil~nk~D  148 (285)
                      +++|+||+|
T Consensus       150 iilv~NK~D  158 (208)
T 3clv_A          150 IILVANKID  158 (208)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEECCC
Confidence            999999999

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.54  E-value=1.4e-13  Score=109.60  Aligned_cols=116  Identities=13%  Similarity=0.046  Sum_probs=76.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|.+++...... ..    |.........+ .+..+.++||||...+....           .
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~-----------~   84 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VP----TVGVNLETLQY-KNISFEVWDLGGQTGVRPYW-----------R   84 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSCCEEE-CS----STTCCEEEEEE-TTEEEEEEEECCSSSSCCCC-----------S
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCc-CC----CCceEEEEEEE-CCEEEEEEECCCCHhHHHHH-----------H
Confidence            48999999999999999999987664321 11    22222344455 57889999999987653321           2


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|++++-+.... .++..+.... .....|+++|+||+|....
T Consensus        85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTTC
T ss_pred             HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcCC
Confidence            346789999999999766544332 2222222211 0112499999999998764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.54  E-value=5.1e-14  Score=110.46  Aligned_cols=120  Identities=21%  Similarity=0.153  Sum_probs=68.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.|++...... ....+.+...  ....+ .+  ..+.++||||.....         ....
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~~   70 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLD---------KSWS   70 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------CHH
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeE--EEEEE-CCEEEEEEEEecCCCCccc---------hhhh
Confidence            47999999999999999999998764322 2223333322  22333 33  368899999986421         0111


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|++++-+.... .++..+..... ....|+++|.||+|....
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~  126 (175)
T 2nzj_A           71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC  126 (175)
T ss_dssp             HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred             HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence            22346778999999999754433322 33333433211 112389999999998653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.54  E-value=7.2e-14  Score=110.55  Aligned_cols=115  Identities=14%  Similarity=0.108  Sum_probs=73.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|.+++...... ..    |.........+ .+..+.++||||...+...           ..
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------~~   80 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQIGEVVTT-KP----TIGFNVETLSY-KNLKLNVWDLGGQTSIRPY-----------WR   80 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSEEEEE-CS----STTCCEEEEEE-TTEEEEEEEEC----CCTT-----------GG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCcCcc-CC----cCccceEEEEE-CCEEEEEEECCCCHhHHHH-----------HH
Confidence            38999999999999999999997664211 11    11122334445 5788999999998764322           12


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--cccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|+.++-+....  ..++......  ....|+++++||+|....
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           81 CYYADTAAVIFVVDSTDKDRMSTA--SKELHLMLQEEELQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHH--HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHH--HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence            446789999999999756554332  1223333221  123499999999998654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.54  E-value=5.4e-14  Score=113.20  Aligned_cols=116  Identities=22%  Similarity=0.184  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||++.+++.. +.....+.  +.......... .+.  .+.++||||...+....          
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~----------   85 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPT--AFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLR----------   85 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC---------CC--SSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSG----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCc--ccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHh----------
Confidence            4899999999999999999999876 33222211  11111122333 443  57799999987654322          


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ..++..+|++++|+|++++.+..+.  .++..+..... .  .|+++|+||+|....
T Consensus        86 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           86 -PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLRED  139 (201)
T ss_dssp             -GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGC
T ss_pred             -HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhc
Confidence             2346788999999999755444442  35555555433 2  399999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.53  E-value=4.2e-14  Score=114.61  Aligned_cols=126  Identities=20%  Similarity=0.179  Sum_probs=76.5

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCC
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSA   84 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~   84 (285)
                      ..+..+.....  .+|+++|++|+|||||+|.+++...... ..+ ...... ...... .+  ..+.++||||...+..
T Consensus        15 ~~~~~~~~~~~--~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~-t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~   88 (207)
T 2fv8_A           15 TENLYFQSMIR--KKLVVVGDGACGKTCLLIVFSKDEFPEV-YVP-TVFENY-VADIEV-DGKQVELALWDTAGQEDYDR   88 (207)
T ss_dssp             ----CGGGSEE--EEEEEEECTTSSHHHHHHHHHHSSCC---------CCEE-EEEEEE-TTEEEEEEEEECTTCTTCTT
T ss_pred             ccccccccccC--cEEEEECcCCCCHHHHHHHHhcCCCCCc-CCC-cccceE-EEEEEE-CCEEEEEEEEECCCcHHHHH
Confidence            33433443333  7999999999999999999998764322 111 111111 112233 33  4689999999876532


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..           ..++..+|++++|+|++++-+...  ..++..+..... .  .|+++|+||+|....
T Consensus        89 ~~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  144 (207)
T 2fv8_A           89 LR-----------PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD  144 (207)
T ss_dssp             TG-----------GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC
T ss_pred             HH-----------HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc
Confidence            21           234678999999999974433222  345555555432 2  289999999998765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.53  E-value=1e-13  Score=107.56  Aligned_cols=114  Identities=12%  Similarity=0.059  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.+++......     .+|.......... .+..+.++||||...+           ......
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~   63 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH   63 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHH
Confidence            3799999999999999999987653221     1233333344455 6788999999997532           112233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--cccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|++++-+....  ..++......  ....|++++.||+|....
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVNEA--REELMRMLAEDELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHH--HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             HhccCCEEEEEEECCCHHHHHHH--HHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence            47889999999999755433322  1223322221  112399999999998654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.53  E-value=1.7e-13  Score=109.79  Aligned_cols=117  Identities=12%  Similarity=0.041  Sum_probs=71.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+++|++|+|||||+|.+++......     .+|.......... .+..+.++||||...+....           
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~-----------   90 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRPLW-----------   90 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CTTH-----------
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHHHH-----------
Confidence            348999999999999999999987664221     1132233344455 67889999999986543211           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|+.++-+.... .++..+.... .....|+++|+||+|....
T Consensus        91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A           91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCCC
Confidence            1224577999999999755433322 2222222211 0112499999999998654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.53  E-value=3.1e-14  Score=113.83  Aligned_cols=117  Identities=18%  Similarity=0.198  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++...........+.+  ........ .+  ..+.++||||...+.....         
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~---------   88 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVNI-DGKQIKLQIWDTAGQESFRSITR---------   88 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEEE-TTEEEEEEEECCTTGGGTSCCCH---------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEE-CCEEEEEEEEECCCchhhhhhHH---------
Confidence            4799999999999999999999766432212122222  22233333 33  4689999999765433221         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                        .++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|...
T Consensus        89 --~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~  140 (191)
T 2a5j_A           89 --SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLES  140 (191)
T ss_dssp             --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             --HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCC
Confidence              23567899999999974433332 34444555443323  38999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.53  E-value=1.4e-13  Score=109.58  Aligned_cols=116  Identities=15%  Similarity=0.099  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|.+++...... ..    |.........+ .+..+.++||||...+....           .
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~-----------~   78 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SP----TIGSNVEEIVI-NNTRFLMWDIGGQESLRSSW-----------N   78 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEE-EC----CSCSSCEEEEE-TTEEEEEEECCC----CGGG-----------H
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCcC-cC----CCccceEEEEE-CCEEEEEEECCCCHhHHHHH-----------H
Confidence            38999999999999999999997664321 11    22222334445 67889999999986543211           1


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|++++-+.... .++..+..... ....|+++|+||+|....
T Consensus        79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  132 (187)
T 1zj6_A           79 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC  132 (187)
T ss_dssp             HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC
Confidence            235678999999999766554432 23333332110 122499999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.53  E-value=1.9e-14  Score=130.56  Aligned_cols=128  Identities=20%  Similarity=0.189  Sum_probs=84.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+++|.+|+|||||+|.|++........ ..++|.........+ .+..++||||||+.+................
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            34899999999999999999999876432222 234444444445555 6789999999998653211110001111111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|+.++++..+..++..+... +    .|+++|+||+|....
T Consensus       272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~  321 (456)
T 4dcu_A          272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDK  321 (456)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCC
T ss_pred             HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCC
Confidence            1234567999999999888999888888877662 3    289999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.53  E-value=3.4e-14  Score=113.27  Aligned_cols=118  Identities=14%  Similarity=0.041  Sum_probs=74.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEeeCC-----------ceEEEEeCCCCCCCCCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG-----------QVVNVIDTPGLFDFSAGS   86 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~-----------~~~~liDtpG~~~~~~~~   86 (285)
                      ..+|+|+|++|+|||||+|.|++........  ........ ...... .+           ..+.++||||...+    
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~----   83 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFI--TTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERF----   83 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGG----
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcc--cccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHH----
Confidence            4799999999999999999999765422211  11111111 122333 22           37999999997432    


Q ss_pred             HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                             .......+..+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|...
T Consensus        84 -------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  141 (195)
T 3bc1_A           84 -------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED  141 (195)
T ss_dssp             -------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred             -------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence                   1223455788999999999975444333 344444544432 12238999999999764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.53  E-value=8.5e-14  Score=111.78  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=76.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...+|+++|.+|+|||||++.+++...... ......+..  .....+  .....+.++||||...+.......      
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~------   89 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTNK--IYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY------   89 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCCCGGG-GGGCCCCCS--CEEEEECCTTSCCEEEEECCSSCCTTCTTCCH------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcCCCcc-eeeeccccc--eeeeeccCCCeeEEEEEECCCCHHHHhhhhhc------
Confidence            358999999999999999999998654221 111111111  122222  134679999999987653322100      


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                        ..++.++|++++|+|+.+++......+..++..........|+++|.||+|+...
T Consensus        90 --~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           90 --EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             --HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             --ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence              1224568999999999866434444444555543211122399999999998753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.53  E-value=3.1e-14  Score=115.00  Aligned_cols=120  Identities=14%  Similarity=0.123  Sum_probs=76.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+|+|++|+|||||+|.|++......  ...+.+............ ...+.|+||||...+....           
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----------   74 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG-----------   74 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH-----------
Confidence            47999999999999999999998764322  122223333333344411 2468999999976543221           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|++++.+... ..++..+......  ....|+++|+||+|...
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (207)
T 1vg8_A           75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  131 (207)
T ss_dssp             CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence            234678899999999975433322 2344444444321  01238999999999874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.53  E-value=6.2e-14  Score=113.02  Aligned_cols=117  Identities=23%  Similarity=0.215  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++...... ..   .|....+ ..... .....+.|+||||...+....          
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~---~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   89 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGEFSEG-YD---PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP----------   89 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSC-CC---CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC----------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCC-CC---CccceEEEEEEEECCEEEEEEEEECCCccchHHHH----------
Confidence            48999999999999999999998764322 11   1222111 11111 134568999999987654332          


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ..++..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|...
T Consensus        90 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  143 (201)
T 3oes_A           90 -YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSP  143 (201)
T ss_dssp             -GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG
T ss_pred             -HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcc
Confidence             234678999999999974433222 223333332211 11238999999999764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.53  E-value=3.8e-14  Score=111.49  Aligned_cols=119  Identities=18%  Similarity=0.087  Sum_probs=75.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.+++........  .+.+.........+ .+  ..+.++||||...+           ...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~   72 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------RSL   72 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------HHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEEEE-CCEEEEEEEEeCCCchhh-----------hhh
Confidence            3799999999999999999999766422211  12222222333334 33  47899999996432           123


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~  151 (285)
                      ....+..+|++++|+|+.++.+... ..++..+......  ....|+++|+||+|...
T Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  130 (177)
T 1wms_A           73 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  130 (177)
T ss_dssp             HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence            3456788999999999975433332 3344555544321  12238999999999863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.53  E-value=1.9e-14  Score=113.31  Aligned_cols=116  Identities=15%  Similarity=0.145  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||+|.+++......  ...+.+.........+ .+  ..+.++||||...+...           .
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~-----------~   80 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSL-----------I   80 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG-----------S
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHH-----------H
Confidence            7999999999999999999997654322  1223333333334444 33  46899999997543211           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|+.++.+... ..++..+....+...  |+++|+||+|...
T Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~  133 (179)
T 2y8e_A           81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLSD  133 (179)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECGGGGG
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCcccc
Confidence            122456799999999974433222 344455554433333  8999999999764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.53  E-value=1.7e-14  Score=117.71  Aligned_cols=119  Identities=21%  Similarity=0.246  Sum_probs=76.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++...........+.+.  .........+  ..+.++||||...+.....         
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------   79 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN--HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD---------   79 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE--EEEEEEBTTSCEEEEEEEEECSGGGTSCCCH---------
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee--EEEEEEeCCCcEEEEEEEecCCchhhchHHH---------
Confidence            47999999999999999999997664222111112111  1122222122  4689999999875543222         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                        ..+..+|++++|+|++++.+..+ ..++..+........  |+++|+||+|....
T Consensus        80 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~  132 (218)
T 4djt_A           80 --VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA--PIVVCANKIDIKNR  132 (218)
T ss_dssp             --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSS--CEEEEEECTTCC--
T ss_pred             --HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccc
Confidence              22567899999999975544433 345566665554433  99999999998653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.52  E-value=9.5e-14  Score=109.97  Aligned_cols=116  Identities=15%  Similarity=0.117  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|.|++...... ....+.+    .....+ .+..+.++||||...+..           ...
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~~~   83 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN----VEEIVI-NNTRFLMWDIGGQESLRS-----------SWN   83 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTTSCEEE-ECCSSSS----CEEEEE-TTEEEEEEEESSSGGGTC-----------GGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCcc-CCcCcee----eEEEEE-CCEEEEEEECCCCHhHHH-----------HHH
Confidence            48999999999999999999998764111 1112222    234445 678899999999864322           123


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|++++.+.... .++..+..... ....|+++|+||+|....
T Consensus        84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC
Confidence            456788999999999766554432 23333322110 122399999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.52  E-value=1.4e-13  Score=109.68  Aligned_cols=117  Identities=18%  Similarity=0.090  Sum_probs=75.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+|+|++|+|||||+|.|++......    ...|....+..... .+..+.++||||...+           .....
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~   85 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPRF-----------RSMWE   85 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHHH-----------HTTHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEEe-CCEEEEEEECCCCHhH-----------HHHHH
Confidence            47999999999999999999997664221    12233333444444 6788999999996431           11222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|....
T Consensus        86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC
Confidence            34578899999999975433332 122222222110 122489999999998754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.52  E-value=1.4e-14  Score=131.02  Aligned_cols=121  Identities=23%  Similarity=0.259  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|.|++....... ...++|.........+ .+..+.|+||||+.++....+   ..-......
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~~~  299 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERSRQ  299 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC-----------------------C
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHHhh
Confidence            78999999999999999999987532121 1234444444445555 788899999999975422111   111122335


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|++++++..+..++..+.    ..   |+++|+||+|....
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~---piivV~NK~Dl~~~  345 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGDQEIYEQVK----HR---PLILVMNKIDLVEK  345 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TS---CEEEEEECTTSSCG
T ss_pred             hhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CC---cEEEEEECCCCCcc
Confidence            577899999999998888887766655543    22   89999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.52  E-value=4.4e-14  Score=121.58  Aligned_cols=125  Identities=19%  Similarity=0.188  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|.+++...... ....++|....+....+.++..+.++||||...+      ....+......
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~~   76 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKDH   76 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHHH
Confidence            7999999999999999999998743211 1234556666666666535678999999996532      11111122234


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ++.++|++++|+|++++-+..+. .+..++..........|+++++||+|...
T Consensus        77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            46789999999999866655554 23333333221111239999999999876

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.52  E-value=3.3e-14  Score=113.65  Aligned_cols=119  Identities=17%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+|+|++|+|||||+|.|++........  ...+.........+. ....+.|+||||...+....           
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-----------   81 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT-----------   81 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCC--CccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh-----------
Confidence            3799999999999999999999776432211  122222222233331 13568999999976543221           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|...
T Consensus        82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~  135 (195)
T 1x3s_A           82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKEN  135 (195)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSS
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcc
Confidence            123567899999999974433222 223333332211 12348999999999854

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.52  E-value=1.5e-14  Score=115.71  Aligned_cols=119  Identities=13%  Similarity=0.069  Sum_probs=75.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+|+|++|+|||||+|.+++...........+.+.......... .+..+.|+||||...           +.....
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~   90 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQER-----------YRTITT   90 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHHH-----------CHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChHH-----------HHHHHH
Confidence            47999999999999999999997653222111122232222222211 356799999999432           222333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|++++-+... ..++..+.......  .|+++|+||+|...
T Consensus        91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~  142 (191)
T 3dz8_A           91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEE  142 (191)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence            44678899999999975433222 34555555543233  39999999999753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.52  E-value=5.9e-14  Score=109.20  Aligned_cols=118  Identities=21%  Similarity=0.092  Sum_probs=62.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ..+|+++|++|+|||||+|.+++....... ...+.+..   ...... ....+.++||||...+..           ..
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~   66 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRW-----------LP   66 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE---EEEEETTEEEEEEEEECC--------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceE---EEEEECCEEEEEEEEECCCCccchh-----------hh
Confidence            379999999999999999999987643221 11222221   122221 234588999999765321           12


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~  121 (166)
T 3q72_A           67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS  121 (166)
T ss_dssp             ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred             hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc
Confidence            234677899999999975533322 233333433211 122489999999998643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.52  E-value=4.4e-14  Score=111.36  Aligned_cols=118  Identities=23%  Similarity=0.222  Sum_probs=72.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~   93 (285)
                      ....+|+++|++|+|||||+|.|++.... ....   .|....+ ....+ .+  ..+.++||||...+.....      
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~---~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~------   75 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYD---PTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE------   75 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCc-cccC---CCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH------
Confidence            34489999999999999999999987532 2111   1222112 22333 33  4688999999876532221      


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                           ..+..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|...
T Consensus        76 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  128 (181)
T 2fn4_A           76 -----QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES  128 (181)
T ss_dssp             -----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred             -----HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence                 12345699999999974433222 233444433222 11238999999999764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.52  E-value=3.2e-14  Score=112.68  Aligned_cols=117  Identities=15%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||+|.+++...... . ..+++.........+ .+  ..+.++||||...+..           ..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----------~~   74 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSEDAFNST-F-ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRT-----------IT   74 (183)
T ss_dssp             EEEEEECCCCC----------------C-H-HHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC-C-CCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhh-----------hH
Confidence            7999999999999999999997653211 1 112222232333444 44  5689999999764321           12


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|....
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  128 (183)
T 2fu5_C           75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDK  128 (183)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSC
T ss_pred             HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCcc
Confidence            345778999999999975433322 23445555443323  399999999998643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.52  E-value=5.8e-14  Score=113.00  Aligned_cols=116  Identities=19%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.+++...........+.+..  ...... .+  ..+.|+||||...+.       ..    
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~~-------~~----   93 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIV-DGERTVLQLWDTAGQERFR-------SI----   93 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE--EEEEEE-TTEEEEEEEEECTTCTTCH-------HH----
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE--EEEEEE-CCEEEEEEEEECCCCcchh-------hh----
Confidence            489999999999999999999977642221111222222  222333 33  458999999976431       11    


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      ...++..+|++++|+|+.++.+... ..++..+.......  .|+++|+||+|..
T Consensus        94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~  146 (199)
T 2p5s_A           94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR  146 (199)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence            1222445799999999975544333 34445555443223  3899999999975

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.51  E-value=6.5e-14  Score=109.37  Aligned_cols=118  Identities=23%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.+++...........+.+..   ..... .  ...+.++||||..++.    .    +   
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~~~~~Dt~G~~~~~----~----~---   67 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISC-DKSICTLQITDTTGSHQFP----A----M---   67 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEE-TTEEEEEEEEECCSCSSCH----H----H---
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEE-CCEEEEEEEEECCCchhhH----H----H---
Confidence            379999999999999999999986643221111111111   11222 2  2458999999976531    1    1   


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|...
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~  123 (172)
T 2erx_A           68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  123 (172)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence            1122345699999999974433322 344555555433212238999999999764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.51  E-value=2.6e-12  Score=112.71  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC--CCcce-----------------------------------------
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS--SGVTS-----------------------------------------   56 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~--~~~t~-----------------------------------------   56 (285)
                      ++|+|+|.+|+|||||+|+|+|....+.+...  ..++.                                         
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~  111 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  111 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence            69999999999999999999998753322111  00110                                         


Q ss_pred             ------eEEEEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhccCC-ccEEEEEEeCCCCCCHHHHHHHHH
Q 023214           57 ------TCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEEEAALHS  127 (285)
Q Consensus        57 ------~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~l~~  127 (285)
                            ......+....+..++||||||+......  .......+...+..++.. .+++++|++++..+...+.  +.+
T Consensus       112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i  189 (353)
T 2x2e_A          112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKV  189 (353)
T ss_dssp             TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHH
T ss_pred             CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHH
Confidence                  00001111112467999999999753211  222222333333333334 4566667787655555443  233


Q ss_pred             HHHHhCccccCeEEEEEeCCCCCCC
Q 023214          128 LQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       128 ~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +......  ..|+++|+||+|....
T Consensus       190 ~~~~~~~--~~~~i~V~NK~Dl~~~  212 (353)
T 2x2e_A          190 AKEVDPQ--GQRTIGVITKLDLMDE  212 (353)
T ss_dssp             HHHHCTT--CTTEEEEEECGGGSCT
T ss_pred             HHHhCcC--CCceEEEeccccccCc
Confidence            4433222  2389999999998754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.51  E-value=4.2e-13  Score=117.90  Aligned_cols=126  Identities=18%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|.|+|.......  ..+.|.......... .+..+.++||||+.+..........  ...+.
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~  241 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQAIL  241 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHHHH
Confidence            379999999999999999999998742221  123444444455544 5778999999999765332211111  11222


Q ss_pred             hccCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .....+|++++|+|+++..  +..+ ..++..+...++.   .|+++|+||.|....
T Consensus       242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~---~piilV~NK~Dl~~~  295 (357)
T 2e87_A          242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD---LPFLVVINKIDVADE  295 (357)
T ss_dssp             GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT---SCEEEEECCTTTCCH
T ss_pred             HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC---CCEEEEEECcccCCh
Confidence            3334679999999986443  5444 4566666665532   399999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.51  E-value=1.8e-14  Score=115.43  Aligned_cols=117  Identities=14%  Similarity=0.208  Sum_probs=72.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.|++......  .....+.........+ .+  ..+.++||||...+       ...    
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~~----   91 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NSI----   91 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HHH----
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HHH----
Confidence            47899999999999999999998764322  1122333333344444 33  46899999996532       111    


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....+..+|++++|+|+.++.+..+ ..++..+.......  .|+++|+||+|...
T Consensus        92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~  145 (192)
T 2il1_A           92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCET  145 (192)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            1222456799999999975544433 23444555543323  38999999999764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.51  E-value=6.6e-14  Score=114.80  Aligned_cols=117  Identities=18%  Similarity=0.162  Sum_probs=74.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++........  .+.+.......+.+ .+  ..+.|+||||...+....          
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~----------   79 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAIT----------   79 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC----------
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhH----------
Confidence            3799999999999999999999876432211  12222222233334 34  478999999987653322          


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ..++..+|++++|+|+.++.+... ..++..+.......  .|++||+||+|...
T Consensus        80 -~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~  132 (223)
T 3cpj_B           80 -SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAH  132 (223)
T ss_dssp             -GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred             -HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence             234778999999999975544333 23445555443323  38999999999764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=116.47  Aligned_cols=136  Identities=21%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----Ccc---eeEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----GVT---STCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EF   88 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-----~~t---~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~   88 (285)
                      .+++|+|+||+|||||+|+|+|...+..|....     ..+   ....+..+...-...++++|+||+.......   ..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            789999999999999999999988766553211     111   1112221211113468999999997643211   11


Q ss_pred             HHH----HHHHHHhhc----------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           89 VGK----EIVKCIGMA----------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        89 ~~~----~~~~~~~~~----------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      +..    .+.......          ...+++.++++|. ++++++.+...+..+...      .++++|+||+|.++. 
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~-  155 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL-  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence            222    222222111          1235888999986 578999997777766543      299999999999987 


Q ss_pred             hhcHHHHhhh
Q 023214          154 DETLEDYLGR  163 (285)
Q Consensus       154 ~~~l~~~l~~  163 (285)
                       ..+..+...
T Consensus       156 -~e~~~~k~~  164 (270)
T 3sop_A          156 -EEKSEFKQR  164 (270)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             556555553

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.51  E-value=2.4e-13  Score=110.13  Aligned_cols=129  Identities=16%  Similarity=0.264  Sum_probs=75.4

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HH
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EF   88 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~   88 (285)
                      +++..+  .+|+|+|++|+|||||+|.|+|......-....+.+.....  ..+ .+ .+.++||||+.......   ..
T Consensus        21 ~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~   94 (210)
T 1pui_A           21 LPSDTG--IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRK   94 (210)
T ss_dssp             SSCSCS--EEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHH
T ss_pred             CCCCCC--cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHH
Confidence            677777  89999999999999999999987621110112233332222  222 22 67899999986432111   11


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +...+..++ .....++++++++|+..+.+..+.....++.. .+    .|++++.||+|..+.
T Consensus        95 ~~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~  152 (210)
T 1pui_A           95 WQRALGEYL-EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS  152 (210)
T ss_dssp             HHHHHHHHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH
T ss_pred             HHHHHHHHH-HhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc
Confidence            122222222 22356789999999976777655444444432 22    278899999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.51  E-value=1.5e-13  Score=109.96  Aligned_cols=114  Identities=15%  Similarity=0.109  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEE-EEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+++|++|+|||||+|.+++.... ...   ..|....+.. ... .+  ..+.++||||...+..           
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------   86 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGEIP-TAY---VPTVFENFSHVMKY-KNEEFILHLWDTAGQEEYDR-----------   86 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC-SSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGTT-----------
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCC-Ccc---CCeeeeeeEEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence            379999999999999999999987642 211   1122222222 222 33  3469999999764322           


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....++..+|++++|+|+.++.+...  ..++..+..... .  .|+++|.||+|...
T Consensus        87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRK  141 (194)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCC
T ss_pred             HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhcc
Confidence            12345778999999999975544444  345555555432 2  29999999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.50  E-value=2e-13  Score=110.94  Aligned_cols=118  Identities=19%  Similarity=0.232  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||++.+++.... ....  +.+  .......+..  +..+.++||||...+       ...+   
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~---   71 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQYR-DTQT--SIT--DSSAIYKVNNNRGNSLTLIDLPGHESL-------RFQL---   71 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSCCC-CBCC--CCS--CEEEEEECSSTTCCEEEEEECCCCHHH-------HHHH---
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcc-cccC--Ccc--eeeEEEEecCCCccEEEEEECCCChhH-------HHHH---
Confidence            379999999999999999999977632 2221  112  2233355522  567999999997521       1112   


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh----CccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF----GKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++.++|++++|+|+.+ +..........+...+    ......|+++|.||+|....
T Consensus        72 ~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           72 LDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             HHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             HHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            2233678899999999973 2222222333332221    11222499999999998765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.50  E-value=7.7e-14  Score=110.52  Aligned_cols=115  Identities=20%  Similarity=0.111  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++.... ....+.  +.......... .+  ..+.++||||...+...           .
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~   70 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPT--VFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRL-----------R   70 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCC--SCCEEEEEEEE-TTEEEEEEEECCCCSGGGTTT-----------G
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCc--ccceeEEEEEE-CCEEEEEEEEECCCCHhHHHH-----------H
Confidence            79999999999999999999976532 211111  11111122233 33  34679999998654221           2


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|++++.+..+.  .++..+....+ .  .|+++|+||+|....
T Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD  124 (186)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--SCEEEEEECHHHHTC
T ss_pred             HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-C--CCEEEEeEccccccc
Confidence            2346789999999999755444333  35555655433 2  399999999998755

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.50  E-value=5.8e-14  Score=113.34  Aligned_cols=120  Identities=20%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .+|+|+|++|+|||||+|.|++... +..... .............+..   ...+.++||||...           +..
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~   88 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYA-MTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL-----------YKE   88 (208)
T ss_dssp             EEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHH-----------HHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcccCCCC-CccceEEEEEEEEECCcccEEEEEEEECCCcHH-----------HHH
Confidence            7999999999999999999998721 211111 1111122233344412   34699999999742           223


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~  151 (285)
                      ....++..+|++++|+|++++.+... ..++..+....+. ....|+++|+||+|...
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            44566788999999999975544333 3455555554330 01239999999999865

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=3.8e-13  Score=106.89  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.|++...+....  .++|.......+.+ .+..+.++||||...+.....  ...+...+..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~~~   82 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDYII   82 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHHHh
Confidence            799999999999999999999876433322  34455555555666 678899999999987633211  1222222111


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                       ...+|++++|+|..+ + .....++..+..   ..  .|+++++||+|..
T Consensus        83 -~~~~~~~i~v~d~~~-~-~~~~~~~~~~~~---~~--~piilv~nK~Dl~  125 (188)
T 2wjg_A           83 -NEKPDLVVNIVDATA-L-ERNLYLTLQLME---MG--ANLLLALNKMDLA  125 (188)
T ss_dssp             -HHCCSEEEEEEEGGG-H-HHHHHHHHHHHT---TT--CCEEEEEECHHHH
T ss_pred             -ccCCCEEEEEecchh-H-HHHHHHHHHHHh---cC--CCEEEEEEhhhcc
Confidence             124789999999862 2 112223333322   22  3899999999975

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.50  E-value=9.8e-14  Score=109.86  Aligned_cols=120  Identities=24%  Similarity=0.262  Sum_probs=72.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEI   93 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~   93 (285)
                      ..+..+|+++|++|+|||||+|.+++...... ..+ ...... ...... .+.  .+.++||||...+.....      
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-~~~-t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~------   84 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD-YDP-TIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMRE------   84 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC-CCT-TCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHH------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-Ccccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHH------
Confidence            33458999999999999999999997653222 111 111111 222333 443  366799999765432211      


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                           .++..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|...
T Consensus        85 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~  137 (183)
T 3kkq_A           85 -----QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH  137 (183)
T ss_dssp             -----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST
T ss_pred             -----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh
Confidence                 12345799999999975433322 234444444322 12238999999999764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.50  E-value=2.8e-13  Score=107.34  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||++.+++......     .+|.........+ .+..+.++||||...+           .....
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~   78 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPYWR   78 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHHHH
Confidence            48999999999999999999998753211     1122222334455 5788999999997532           11223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|+.++-+.... .++..+..... ....|++++.||+|....
T Consensus        79 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  132 (181)
T 1fzq_A           79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA  132 (181)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC
Confidence            346788999999999755443332 22222211111 122489999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=114.27  Aligned_cols=117  Identities=18%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++........  .+.+.......... .+  ..+.|+||||...+...           
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~-----------   90 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSV-----------   90 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCC-----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHH-----------
Confidence            3799999999999999999999876432211  12222222233333 33  57999999996432211           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|+.++.+... ..++..+.......  .|+++|+||+|...
T Consensus        91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~  144 (200)
T 2o52_A           91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDP  144 (200)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGG
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccc
Confidence            1233567899999999975433332 33444454443333  38999999999753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.49  E-value=7.5e-14  Score=108.48  Aligned_cols=117  Identities=20%  Similarity=0.175  Sum_probs=70.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.+++.... ....+.  +.......... .+  ..+.++||||...+.    .       .
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~----~-------~   68 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT--KADSYRKKVVL-DGEEVQIDILDTAGQEDYA----A-------I   68 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTT--CCEEEEEEEEE-TTEEEEEEEEECCC---CH----H-------H
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCC--cceEEEEEEEE-CCEEEEEEEEECCCcchhH----H-------H
Confidence            379999999999999999999977632 211111  11111122333 33  368999999976431    1       1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|+.++.+... ..++..+..... ....|+++++||+|...
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  123 (168)
T 1u8z_A           69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED  123 (168)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccc
Confidence            1122446799999999974433222 344445554433 11239999999999764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.49  E-value=6.9e-14  Score=112.99  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=76.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.+++...... . ..+++.........+ .+  ..+.++||||...+           ...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~~~   91 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG-Q-GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERF-----------RSI   91 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTT-C-CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------HHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCC-C-CCccceeEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HHH
Confidence            37999999999999999999997664221 1 122223333333444 33  36899999996431           223


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|++++.+... ..++..+.......  .|+++|.||+|...
T Consensus        92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~  145 (201)
T 2ew1_A           92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAE  145 (201)
T ss_dssp             HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence            4456788999999999974433322 34455555543323  38999999999763

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=120.47  Aligned_cols=130  Identities=21%  Similarity=0.284  Sum_probs=68.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-----CCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCC---
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAG---   85 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~---   85 (285)
                      +...+|+|+|++|+|||||+|+|++...+..+..+     ...|........... .+  ..++++||||+.+....   
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            33478999999999999999999988766543321     112333222222221 23  36899999999654321   


Q ss_pred             ----cHHHHHHHHHHHhhc---------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           86 ----SEFVGKEIVKCIGMA---------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        86 ----~~~~~~~~~~~~~~~---------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                          ...+...+..++...         -..+|+++|+++. .+++...+..++..+    ...+  |+|+|+||+|...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~--piIlV~NK~Dl~~  188 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKV--NIVPVIAKADTLT  188 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-S--CEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCC--CEEEEEECCCCCC
Confidence                111222222333221         1235788998886 567887776554443    3333  9999999999876


Q ss_pred             C
Q 023214          152 D  152 (285)
Q Consensus       152 ~  152 (285)
                      .
T Consensus       189 ~  189 (361)
T 2qag_A          189 L  189 (361)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.49  E-value=5.2e-14  Score=109.45  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||+|.+++..... ...   .|....+ ...... ....+.++||||...+..    ..       
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~~~-~~~---~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~-------   68 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIFVE-KYD---PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MR-------   68 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCC-SCC---CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HH-------
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCC---CCccceEEEEEEECCEEEEEEEEECCChHHHHH----HH-------
Confidence            799999999999999999999765322 111   1222222 222231 134689999999875432    11       


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|+.++.+... ..++..+..... ....|+++++||+|...
T Consensus        69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  122 (167)
T 1c1y_A           69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED  122 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence            112345699999999975433222 234444544332 12238999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.49  E-value=9.2e-14  Score=110.34  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=74.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.+++.... ....   +|....+ ...... ....+.++||||...+...           
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   71 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYV---PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-----------   71 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCC---CCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCCC-CCCC---CccceeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence            379999999999999999999976532 2111   1222111 122331 1346899999997643221           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|++++.+...  ..++..+..... .  .|+++|.||+|....
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~  126 (184)
T 1m7b_A           72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTD  126 (184)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGC
T ss_pred             HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcc
Confidence            1235778999999999975544333  234455555433 2  399999999998643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.49  E-value=1.8e-13  Score=115.61  Aligned_cols=117  Identities=18%  Similarity=0.214  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||+|.|+|...+.+..  .++|+......+..  +..+.++||||..++.....  ...+...+..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~~   77 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYLL   77 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCCCCSS--SCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHHh
Confidence            799999999999999999999976443322  34555433333322  66799999999987643221  2223222221


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                       ...+|++++|+|+++ . .....++..+.. .+    .|+++++||+|..
T Consensus        78 -~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-~~----~p~ilv~NK~Dl~  120 (272)
T 3b1v_A           78 -SQRADSILNVVDATN-L-ERNLYLTTQLIE-TG----IPVTIALNMIDVL  120 (272)
T ss_dssp             -TTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-TC----SCEEEEEECHHHH
T ss_pred             -cCCCCEEEEEecCCc-h-HhHHHHHHHHHh-cC----CCEEEEEEChhhC
Confidence             146899999999863 2 112223333333 12    2899999999975

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.49  E-value=6.7e-14  Score=124.96  Aligned_cols=126  Identities=20%  Similarity=0.203  Sum_probs=83.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .+...+|+++|++|+|||||+|.|++...... ....+.|.........+.....+++|||||+.++...........  
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~--  107 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA--  107 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH--
Confidence            34458999999999999999999998775222 223455666666667663334899999999987654322211222  


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                        ..++..+|++++|+|+  .....+..++..+... +    .|+++|+||+|.....
T Consensus       108 --~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~~  156 (423)
T 3qq5_A          108 --RRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGEK  156 (423)
T ss_dssp             --HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTCC
T ss_pred             --HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCcc
Confidence              2335678999999998  5666777788877765 2    2899999999988663

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.49  E-value=1.4e-13  Score=112.14  Aligned_cols=116  Identities=22%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.|++.... ....+.  +.......... .+  ..+.++||||...+..           .
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~-----------~   98 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPT--VFERYMVNLQV-KGKPVHLHIWDTAGQDDYDR-----------L   98 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC--------CCC--CCEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCc--cceeEEEEEEE-CCEEEEEEEEECCCchhhhH-----------H
Confidence            379999999999999999999987642 211111  11111122333 33  3689999999764321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|++++.+....  .++..+..... .  .|+++|+||+|....
T Consensus        99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  153 (214)
T 2j1l_A           99 RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD  153 (214)
T ss_dssp             ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc
Confidence            22346788999999999755443332  34555555432 2  389999999998765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.49  E-value=1.4e-13  Score=111.26  Aligned_cols=117  Identities=21%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...+|+++|++|+|||||++.+++...... ..  +.+.......... .+.  .+.++||||...+..           
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------   93 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YI--PTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR-----------   93 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CC--CCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTT-----------
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cC--CeecceeEEEEEE-CCEEEEEEEEECCCchhhHH-----------
Confidence            348999999999999999999996553211 11  1122221222233 343  456999999865432           


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....++..+|++++|+|++++.+..+.  .++..+..... .  .|+++|+||+|....
T Consensus        94 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  149 (204)
T 4gzl_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD  149 (204)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc
Confidence            122457789999999999755544443  35555555432 2  399999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.49  E-value=8.1e-14  Score=125.79  Aligned_cols=127  Identities=20%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV-KCI   97 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~~~   97 (285)
                      ..+|+|+|++|+|||||+|.|+|....... ...++|.......+.+ .+..+.++||||+.............+. ...
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence            379999999999999999999998642221 2234555554556666 7888999999998532211100000000 000


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|+..+.+..+......+... +    .|+++++||+|....
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-~----~~~ilv~NK~Dl~~~  307 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-G----RASVVVFNKWDLVVH  307 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSTT
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCCc
Confidence            1223456999999999877887775555544432 3    289999999998765

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.49  E-value=2.3e-13  Score=125.65  Aligned_cols=118  Identities=18%  Similarity=0.252  Sum_probs=87.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc------------------cc--ccCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAF------------------KS--RASSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~------------------~~--~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (285)
                      .++|+|||+.++|||||...|+-....                  +.  .-...|+|+.....+..| .+..++||||||
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPG  109 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTPG  109 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCCC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCCC
Confidence            489999999999999999998721110                  00  011246777777788888 899999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      +.||..       ++.+.    +..+|++++|+|+..++.......|+.+... +  .  |.++++||+|....+
T Consensus       110 HvDF~~-------Ev~ra----L~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~--l--p~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          110 HQDFSE-------DTYRV----LTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-A--T--PVMTFVNKMDREALH  168 (548)
T ss_dssp             GGGCSH-------HHHHH----HHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--CEEEEEECTTSCCCC
T ss_pred             cHHHHH-------HHHHH----HHhcCceEEEeecCCCcccccHHHHHHHHHh-C--C--ceEEEEecccchhcc
Confidence            999853       33334    4456999999999889999999999888764 3  2  899999999988654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.49  E-value=2.3e-13  Score=109.67  Aligned_cols=116  Identities=19%  Similarity=0.150  Sum_probs=75.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||++.+++...........+....   ..... .+  ..+.++||||...+...           
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~l~i~Dt~G~~~~~~~-----------   89 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIEV-DGKQVELALWDTAGQEDYDRL-----------   89 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE---EEEEE-TTEEEEEEEECCCCSGGGTTT-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE---EEEEE-CCEEEEEEEEECCCchhHHHH-----------
Confidence            479999999999999999999977643221111111111   12233 33  46899999997643221           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|++++-+...  ..++..+..... .  .|+++|+||+|....
T Consensus        90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  144 (201)
T 2gco_A           90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD  144 (201)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC
T ss_pred             HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC
Confidence            1235778999999999975433333  245555555432 2  399999999998765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.49  E-value=6.7e-14  Score=109.21  Aligned_cols=118  Identities=23%  Similarity=0.135  Sum_probs=66.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||+|.+++.........  +.+.......... .+  ..+.++||||...+...       +.   
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~-------~~---   69 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM--ENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW-------LQ---   69 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccC--CCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh-------hh---
Confidence            6899999999999999999997654222211  1222222233333 33  45789999998754211       11   


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|...
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~  123 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR  123 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGG
T ss_pred             hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhh
Confidence            112344799999999975433222 234444444322 11239999999999763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.49  E-value=2.2e-13  Score=108.87  Aligned_cols=123  Identities=11%  Similarity=0.094  Sum_probs=74.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEE---Eee-CCceEEEEeCCCCCCCCCCcHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRT---VLK-DGQVVNVIDTPGLFDFSAGSEF   88 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~---~~~-~~~~~~liDtpG~~~~~~~~~~   88 (285)
                      ..+|+|+|++|+|||||++.+.|.........      ....|....+...   ... ....+.++||||...+..    
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----   89 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA----   89 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH----
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH----
Confidence            37999999999999999999987654221100      0112332222211   110 124589999999875421    


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC----ccccCeEEEEEeCCCCCCC
Q 023214           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~iil~nk~D~~~~  152 (285)
                             ....++..+|++++|+|+.++.+......+..+...+.    .....|+++|.||+|....
T Consensus        90 -------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           90 -------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             -------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred             -------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence                   12234778999999999975544444444444333221    1123499999999998654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.49  E-value=3.5e-13  Score=115.28  Aligned_cols=130  Identities=14%  Similarity=0.106  Sum_probs=75.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC----------------------ccee---------------
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG----------------------VTST---------------   57 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~----~~----------------------~t~~---------------   57 (285)
                      .++|+|+|.+|+|||||+|+|+|....+.+...    .+                      .|..               
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g  105 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence            379999999999999999999998753222110    00                      0000               


Q ss_pred             --------EEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHHHH
Q 023214           58 --------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEEAALH  126 (285)
Q Consensus        58 --------~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~v~~~~~~~~~~~~~~l~  126 (285)
                              .............++||||||+.....  ........+...+..++..+++++ +|+|++.+++..+..  .
T Consensus       106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~--~  183 (299)
T 2aka_B          106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--K  183 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH--H
T ss_pred             cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH--H
Confidence                    000111111246799999999975321  012222233333444455666555 789987666655532  2


Q ss_pred             HHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          127 SLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       127 ~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++......  ..|+++|+||+|....
T Consensus       184 ~~~~~~~~--~~~~i~V~NK~Dl~~~  207 (299)
T 2aka_B          184 IAKEVDPQ--GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHCTT--CSSEEEEEECGGGSCT
T ss_pred             HHHHhCCC--CCeEEEEEEccccCCC
Confidence            22322121  2389999999998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.49  E-value=3.8e-13  Score=104.31  Aligned_cols=116  Identities=17%  Similarity=0.177  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||+|.+++...... ..+. .. ......... .+  ..+.++||||...+.    .    +.   
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~-~~-~~~~~~~~~-~~~~~~~~l~D~~G~~~~~----~----~~---   68 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTFIEK-YDPT-IE-DFYRKEIEV-DSSPSVLEILDTAGTEQFA----S----MR---   68 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTT-CC-EEEEEEEEE-TTEEEEEEEEECCCTTCCH----H----HH---
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCccc-CCCC-cc-eeEEEEEEE-CCEEEEEEEEECCCchhhH----H----HH---
Confidence            7999999999999999999997654322 1111 11 111222333 33  348999999976431    1    11   


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|...
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  122 (167)
T 1kao_A           69 DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES  122 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc
Confidence            122445699999999974433322 234444444332 12248999999999754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.48  E-value=1.4e-13  Score=106.55  Aligned_cols=117  Identities=21%  Similarity=0.248  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||+|.+++...... ..+.  +.......... .+  ..+.++||||...+..    ..       
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~--~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~----~~-------   68 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-CDPT--IEDSYRKQVVI-DGETCLLDILDTAGQEEYSA----MR-------   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCSC-CCTT--CCEEEEEEEEE-TTEEEEEEEEECCCCSSCCH----HH-------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCccc-cCCc--cceEEEEEEEE-CCEEEEEEEEECCCchhhhH----HH-------
Confidence            6899999999999999999997754222 1111  11111222233 33  3478999999765321    11       


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|+.++.+... ..++..+..... ....|+++++||+|....
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~  123 (166)
T 2ce2_X           69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAAR  123 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC
T ss_pred             HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhc
Confidence            112345699999999874433222 344444544432 112389999999998753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.6e-13  Score=109.69  Aligned_cols=120  Identities=10%  Similarity=0.120  Sum_probs=69.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|++|+|||||+|.|++........ ....+...     .+ .+..+.++||||...+.....   .    ++.
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~~---~----~~~  113 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKLS---D----YLK  113 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH---H----HHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCceee-----ee-cCCeEEEEECCCCchHHHHHH---H----HHH
Confidence            4799999999999999999999876422111 11111111     11 456789999999976543221   2    222


Q ss_pred             hccCCccEEEEEEeCC-CCCCHHH-HHHHHHHHHHhC--ccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVR-SRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~-~~~~~~~-~~~l~~~~~~~~--~~~~~~~iil~nk~D~~~~  152 (285)
                      .....+|++++|+|+. +.-+... ..++..+.....  .....|+++|+||+|....
T Consensus       114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence            2234579999999986 2211111 122222222111  0112389999999998865

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.48  E-value=2.4e-13  Score=108.72  Aligned_cols=116  Identities=18%  Similarity=0.121  Sum_probs=76.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||++.+++... .....+. +... ....... .+  ..+.++||||...+...           
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t-~~~~-~~~~~~~-~~~~~~~~i~D~~G~~~~~~~-----------   82 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPT-VFDH-YAVSVTV-GGKQYLLGLYDTAGQEDYDRL-----------   82 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCS-SCCC-EEEEEES-SSCEEEEEEECCCCSSSSTTT-----------
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCc-ccce-eEEEEEE-CCEEEEEEEEECCCCcchhHH-----------
Confidence            37999999999999999999997753 2221111 1111 1122333 33  46889999998765322           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|+.++-+....  .++..+..... .  .|+++|+||+|....
T Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  137 (194)
T 2atx_A           83 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD  137 (194)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC
T ss_pred             HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc
Confidence            12457789999999999755333332  45556655433 2  399999999998765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.48  E-value=2.9e-13  Score=107.85  Aligned_cols=117  Identities=21%  Similarity=0.214  Sum_probs=69.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|.+|+|||||+|.|++...... ..+  .+.......... .+  ..+.|+||||...+..           .
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----------~   85 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-YDP--TIEDSYRKQVVI-DGETCLLDILDTAGQEEYSA-----------M   85 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSC-CCT--TCCEEEEEEEEE-TTEEEEEEEEECCC------------------
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCCccc-cCC--ccceEEEEEEEE-CCEEEEEEEEECCChHHHHH-----------H
Confidence            37999999999999999999997753221 111  111111222333 33  3488999999764321           2


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|+.++.+..+ ..++..+..... ....|+++|+||+|...
T Consensus        86 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           86 RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             ----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred             HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc
Confidence            2244678899999999975544333 234444444432 11238999999999765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.48  E-value=6.7e-14  Score=128.53  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=84.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc----------------cc----cCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (285)
                      .++|+|+|++|+|||||+|.|++.....                ..    ....++|.........+ .+..++||||||
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTPG   91 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTPG   91 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECCC
Confidence            3799999999999999999997221100                00    00124455555566666 788999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.++..           ....++..+|++++|+|+.++.+......+..+... +  .  |+++++||+|....
T Consensus        92 ~~df~~-----------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~--i--PiivviNK~Dl~~~  149 (528)
T 3tr5_A           92 HADFTE-----------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H--T--PIMTFINKMDRDTR  149 (528)
T ss_dssp             STTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T--C--CEEEEEECTTSCCS
T ss_pred             chhHHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C--C--CEEEEEeCCCCccc
Confidence            987642           122346678999999999888888888888766543 2  2  89999999998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.48  E-value=1.1e-13  Score=111.05  Aligned_cols=118  Identities=23%  Similarity=0.204  Sum_probs=72.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEE-EEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+++|++|+|||||+|.|++.........    |....+.. ... .  ...+.++||||...+.    .    +  
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~----~--   72 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP----TIEDTYRQVISC-DKSVCTLQITDTTGSHQFP----A----M--   72 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC----CCCEEEEEEEEE-TTEEEEEEEEECCGGGSCH----H----H--
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcCCCCCcccC----ccccceeEEEEE-CCEEEEEEEEeCCChHHhH----H----H--
Confidence            38999999999999999999997654222111    11111111 222 2  3468999999976431    1    1  


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ...++..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|....
T Consensus        73 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~  129 (199)
T 2gf0_A           73 -QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR  129 (199)
T ss_dssp             -HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred             -HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence             1122445799999999974433222 2345555554332123489999999998653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.48  E-value=1.6e-13  Score=112.08  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      .+|+|||.+|+|||||++.++.... +....   +|+...+  ..... .+  ..+.||||+|...+..           
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~---~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~-----------   77 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQ---ATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRS-----------   77 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC-C-------------CEEEEEEC-SSCEEEEEEECCSCTTTCGG-----------
T ss_pred             EEEEEECcCCcCHHHHHHHHHhCCC-CCCcC---CccceEEEEEEEEe-cceEEEEEEEECCCchhhhh-----------
Confidence            7999999999999999999986553 22211   2222222  22223 33  4578999999876532           


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....++.+++++++|+|.+++-+... ..++..+....++.+  |++||.||.|+..
T Consensus        78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~  132 (216)
T 4dkx_A           78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLAD  132 (216)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGG
T ss_pred             HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHh
Confidence            12234778999999999975555443 456666766656554  9999999999764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.48  E-value=5.2e-14  Score=115.18  Aligned_cols=120  Identities=20%  Similarity=0.131  Sum_probs=75.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+++|.+|+|||||+|.++............+.+.......... .+..+.++||||...+.....          
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~----------   82 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRD----------   82 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCH----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHH----------
Confidence            348999999999999999999553332111112223333332222211 245689999999765433222          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       .++..+|++++|+|++++.+... ..++..+..... .  .|+++|+||+|....
T Consensus        83 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~  134 (221)
T 3gj0_A           83 -GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR  134 (221)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC
T ss_pred             -HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc
Confidence             23567899999999975544333 344555555433 2  289999999998654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.48  E-value=6.2e-13  Score=107.16  Aligned_cols=117  Identities=21%  Similarity=0.189  Sum_probs=72.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++.... ....+.  +.........+ .+  ..+.|+||||...+.    .    +   
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~----~---   78 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT--KADSYRKKVVL-DGEEVQIDILDTAGQEDYA----A----I---   78 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTT--CCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----H----H---
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc--cceEEEEEEEE-CCEEEEEEEEcCCChhhhH----H----H---
Confidence            479999999999999999999977632 221111  11111223333 33  368999999976531    1    1   


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....+..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|...
T Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  133 (206)
T 2bov_A           79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED  133 (206)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGG
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccc
Confidence            1122445799999999974433222 344444554432 11238999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.48  E-value=2.5e-13  Score=110.76  Aligned_cols=116  Identities=15%  Similarity=0.064  Sum_probs=76.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||++.+++.... ....   .|....+. ..... ....+.|+||||...+...           
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------   91 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYV---PTVFENYTACLETEEQRVELSLWDTSGSPYYDNV-----------   91 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCC---CCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT-----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCC-CCcC---CeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH-----------
Confidence            389999999999999999999976642 2111   12222221 12221 2346899999997643221           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|++++-+...  ..++..+..... ..  |+++|.||+|....
T Consensus        92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~--piilv~nK~Dl~~~  146 (214)
T 3q3j_B           92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-ST--RVLLIGCKTDLRTD  146 (214)
T ss_dssp             GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TS--EEEEEEECGGGGGC
T ss_pred             HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CC--CEEEEEEChhhccc
Confidence            2245778999999999986655444  355666666533 33  99999999998653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.47  E-value=2.2e-13  Score=109.86  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.+++...... . ..+.+.........+ .+  ..+.|+||||...+           ...
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~   94 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSER-Q-GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RTI   94 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCC-C-CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHH
Confidence            37999999999999999999997663211 1 111112222233344 33  47899999997532           112


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|++++.+... ..++..+.......  .|+++|.||+|...
T Consensus        95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~  148 (201)
T 2hup_A           95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSE  148 (201)
T ss_dssp             HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCcccc
Confidence            2334678899999999974433222 24455555543233  38999999999864

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.47  E-value=1.3e-14  Score=116.93  Aligned_cols=118  Identities=20%  Similarity=0.211  Sum_probs=72.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|++|+|||||+|.|++........  .+.+.........+ .+  ..+.|+||||...+.....         
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~---------  100 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITS---------  100 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSC---------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHH---------
Confidence            4799999999999999999999866432211  12222233333444 34  4689999999776543222         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                        .++..+|++++|+|+.++.+... ..++..+......  ..|+++|+||+|....
T Consensus       101 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B          101 --SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK  153 (199)
T ss_dssp             --C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred             --HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence              34678899999999975544333 2333434332222  2389999999998643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.47  E-value=1.9e-13  Score=107.48  Aligned_cols=119  Identities=17%  Similarity=0.128  Sum_probs=73.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+++|++|+|||||+|.+++...........+  .........+ .+   ..+.++||||...+....         
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~~---------   73 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKML---------   73 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTTH---------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEEe-CCCCEEEEEEEECCCCccccchh---------
Confidence            47999999999999999999997664221111111  2222333444 33   579999999987543221         


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~  151 (285)
                        ..++..+|++++|+|++++.+... ..++..+...... ...+++++|.||+|...
T Consensus        74 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~  129 (178)
T 2hxs_A           74 --DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH  129 (178)
T ss_dssp             --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred             --hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence              123567899999999975443322 2344444443211 01124889999999764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.47  E-value=3.7e-13  Score=122.87  Aligned_cols=118  Identities=16%  Similarity=0.218  Sum_probs=81.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|++|+|||||+|.|++.....                             ......++|....+....+ .+.
T Consensus        33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~  111 (483)
T 3p26_A           33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA  111 (483)
T ss_dssp             EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCc
Confidence            4799999999999999999998652100                             0011236677777777766 678


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEE
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .++|+||||+.++       ..    .....+..+|++++|+|++++       +....+..+..+... +.+   |+++
T Consensus       112 ~~~iiDTPG~~~f-------~~----~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~---~iIv  176 (483)
T 3p26_A          112 NFTIVDAPGHRDF-------VP----NAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIH---NLII  176 (483)
T ss_dssp             EEEEECCCCCGGG-------HH----HHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCC---CEEE
T ss_pred             eEEEEECCCcHHH-------HH----HHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCC---cEEE
Confidence            9999999998642       12    222345678999999999755       345555555555443 432   7999


Q ss_pred             EEeCCCCCCC
Q 023214          143 VFTGGDELED  152 (285)
Q Consensus       143 l~nk~D~~~~  152 (285)
                      ++||+|....
T Consensus       177 viNK~Dl~~~  186 (483)
T 3p26_A          177 AMNKMDNVDW  186 (483)
T ss_dssp             EEECGGGGTT
T ss_pred             EEECcCcccc
Confidence            9999998763

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.46  E-value=5.6e-13  Score=117.08  Aligned_cols=125  Identities=15%  Similarity=0.125  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|+|+|++|+|||||+|.|+|...+...  ..+.|.......+.+ .+..+.++||||+...  .+......+...+ .
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~--lp~~lve~f~~tl-~  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG--IPPQIVDAFFVTL-S  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS--CCGGGHHHHHHHH-H
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEEEEE-CCEEEEEEeCCCchhc--CCHHHHHHHHHHH-H
Confidence            45999999999999999999998753222  123344444455666 6788999999998542  1222223333333 3


Q ss_pred             ccCCccEEEEEEeCCCCC--CHHHHH-HHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRF--SQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|.+++|+|++++.  ...... +...+... +. ...|+++|.||+|..+.
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING  307 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc
Confidence            456789999999987553  122222 23333332 31 12389999999998765

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.46  E-value=1.9e-13  Score=110.73  Aligned_cols=117  Identities=16%  Similarity=0.097  Sum_probs=75.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...+|+++|++|+|||||+|.+++.... ....   .|....+ ...... ....+.|+||||...+...          
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------   92 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYV---PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------   92 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCC---CCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT----------
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcC---CccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH----------
Confidence            3479999999999999999999986542 2111   1222222 222331 1346899999997643221          


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ...++..+|++++|+|++++.+...  ..++..+..... .  .|+++|.||+|....
T Consensus        93 -~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~  147 (205)
T 1gwn_A           93 -RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTD  147 (205)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGC
T ss_pred             -HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccc
Confidence             1235778999999999975544333  244455555433 2  399999999998643

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.46  E-value=4.1e-13  Score=109.44  Aligned_cols=120  Identities=10%  Similarity=0.175  Sum_probs=72.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      ...+|+++|++|+|||||++.|++........ ....+....     + ....+.++||||+..+.       ..+..++
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~~~   76 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSDYL   76 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHHHH
Confidence            34799999999999999999999876422111 111122111     1 35678999999986532       1222233


Q ss_pred             hhccCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhC--ccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVR-S--RFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~-~--~~~~~~~~~l~~~~~~~~--~~~~~~~iil~nk~D~~~~  152 (285)
                      ......+|++++|+|+. +  .+.... .++..+.....  .....|+++|+||+|....
T Consensus        77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           77 KTRAKFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HhccccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            22233479999999997 3  333333 33333322211  0112389999999998765

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.46  E-value=5.5e-14  Score=127.63  Aligned_cols=120  Identities=23%  Similarity=0.320  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHHH-HHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVG-KEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~-~~~~~~~   97 (285)
                      .+|+|+|++|+|||||+|.|++....... ...++|.......+.+ .+..+.|+||||+. .+....+..+ ....   
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~---  318 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTL---  318 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHH---
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHH---
Confidence            79999999999999999999987532121 1234455555555666 78889999999997 5432211110 1111   


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ..+..+|++++|+|++++.+..+...++.+    ..   .|+++|+||+|....
T Consensus       319 -~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~---~piivV~NK~DL~~~  365 (482)
T 1xzp_A          319 -QEIEKADIVLFVLDASSPLDEEDRKILERI----KN---KRYLVVINKVDVVEK  365 (482)
T ss_dssp             -HHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TT---SSEEEEEEECSSCCC
T ss_pred             -HHhhcccEEEEEecCCCCCCHHHHHHHHHh----cC---CCEEEEEECcccccc
Confidence             224567999999999877787766554433    22   289999999998653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.46  E-value=1.9e-13  Score=107.67  Aligned_cols=110  Identities=19%  Similarity=0.134  Sum_probs=69.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++.....  ..+......  ...... .+  ..+.++||||...     .          
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~-----~----------   67 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQY--KKEMLV-DGQTHLVLIREEAGAPD-----A----------   67 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEE--EEEEEE-TTEEEEEEEEECSSSCC-----H----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeE--EEEEEE-CCEEEEEEEEECCCCch-----h----------
Confidence            799999999999999999999766432  111111111  122333 33  4578999999763     1          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccCeEEEEEeCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGK-KIFDYMIVVFTGGDEL  150 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~~iil~nk~D~~  150 (285)
                       .++..+|++++|+|++++-+.... .++.++...... ....|+++|.||.|..
T Consensus        68 -~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           68 -KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             -HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence             123457999999999755444433 333344444321 1224999999999974

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.46  E-value=7e-13  Score=104.94  Aligned_cols=117  Identities=21%  Similarity=0.190  Sum_probs=72.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||+|.|++...... ..+  .+.......... .+  ..+.|+||||...+.    .    +   
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~----~---   82 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDEFVED-YEP--TKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----A----I---   82 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCT--TCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----H----H---
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc-CCC--ccceEEEEEEEE-CCEEEEEEEEECCCCcccH----H----H---
Confidence            47999999999999999999997663221 111  111111222333 33  368999999976531    1    1   


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|...
T Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  137 (187)
T 2a9k_A           83 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED  137 (187)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGG
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            1122445799999999974433222 344455555433 11238999999999764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.46  E-value=1.3e-13  Score=108.85  Aligned_cols=115  Identities=20%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++.... ....+   |....+. .... .....+.++||||...+....           
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~---t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-----------   73 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVP---TVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR-----------   73 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTTTTG-----------
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCC---eeeeeEEEEEEECCEEEEEEEEECCCChhhhhhH-----------
Confidence            79999999999999999999976532 21111   1111110 1111 013446799999987643221           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|++++.+....  .++..+..... .  .|+++|+||+|....
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD  127 (182)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC
T ss_pred             HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC
Confidence            2346788999999999755443332  35555555433 2  399999999997654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.46  E-value=1.1e-12  Score=118.12  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=82.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc--cc------------cc-----------------CCCCcceeEEEEEEEeeC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAF--KS------------RA-----------------SSSGVTSTCEMQRTVLKD   67 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~--~~------------~~-----------------~~~~~t~~~~~~~~~~~~   67 (285)
                      ..+|+++|+.++|||||+|.|++....  ..            +.                 ...+.|....+..... .
T Consensus        24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-~  102 (434)
T 1zun_B           24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-A  102 (434)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-S
T ss_pred             ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-C
Confidence            479999999999999999999865310  00            00                 0124566655555555 6


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (285)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~  147 (285)
                      +..++|+||||+.++       ...+.    ..+..+|++++|+|+.++.....+..+..+... +.+   ++++++||+
T Consensus       103 ~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~~---~iIvviNK~  167 (434)
T 1zun_B          103 KRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAINKM  167 (434)
T ss_dssp             SEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEECT
T ss_pred             CceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEEcC
Confidence            778999999997643       12222    235678999999999878888777777666543 432   799999999


Q ss_pred             CCCCC
Q 023214          148 DELED  152 (285)
Q Consensus       148 D~~~~  152 (285)
                      |....
T Consensus       168 Dl~~~  172 (434)
T 1zun_B          168 DLNGF  172 (434)
T ss_dssp             TTTTS
T ss_pred             cCCcc
Confidence            98753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.45  E-value=1.9e-13  Score=108.68  Aligned_cols=123  Identities=20%  Similarity=0.160  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|.+++... ..... .++|.....  ..+ .  .+.++||||+.+....+......+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~-~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKR-PGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSS-TTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCC-ccCCC-CCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            5899999999999999999998864 22222 233433222  222 2  689999999876554443322333322222


Q ss_pred             c----cCCccEEEEEEeCCCCCCHHHHHHH---------HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 A----KDGIHAVLVVFSVRSRFSQEEEAAL---------HSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~----~~~~~~~l~v~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +    ...++.+++|+|.. .+......+.         ..+.......  .|+++|.||+|....
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~  137 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN  137 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc
Confidence            2    34556777777764 2211101111         1112111112  389999999998765

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.45  E-value=1.1e-12  Score=119.49  Aligned_cols=117  Identities=18%  Similarity=0.283  Sum_probs=80.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc---c--cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAF---K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~---~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (285)
                      ..+|+++|+.++|||||++.|++....   +  ......++|....+....+ .+..++++||||+.+           +
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~-----------~   86 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD-----------L   86 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------H
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH-----------H
Confidence            379999999999999999999987611   0  1112345677666666666 678999999999632           2


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .......+..+|++++|+|+.+...+.....+..+... +-    |.++++||+|....
T Consensus        87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~i----p~IvviNK~Dl~~~  140 (482)
T 1wb1_A           87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-NI----PIIVVITKSDNAGT  140 (482)
T ss_dssp             HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CBCEEEECTTSSCH
T ss_pred             HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-CC----CEEEEEECCCcccc
Confidence            22333446788999999999877888888777766553 42    67999999998753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.45  E-value=1e-13  Score=128.10  Aligned_cols=134  Identities=20%  Similarity=0.318  Sum_probs=79.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-EEEE------------------------------------
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQ------------------------------------   61 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~-~~~~------------------------------------   61 (285)
                      .++|+|+|.+|+|||||+|+|+|........+....|.. ....                                    
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~  144 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM  144 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence            479999999999999999999998753111111111111 0000                                    


Q ss_pred             EEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHH--HHHHHhhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCcc
Q 023214           62 RTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKE--IVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKK  135 (285)
Q Consensus        62 ~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~~~  135 (285)
                      ...+ .+   ..++||||||+.+....  .+.+.  +......++..+|++++|+|+.. .++..+..++..+...   .
T Consensus       145 ~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~  218 (550)
T 2qpt_A          145 CAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---E  218 (550)
T ss_dssp             EEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---G
T ss_pred             EEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---C
Confidence            0000 00   36899999999863211  00000  11222233456799999999975 3667766666655432   1


Q ss_pred             ccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214          136 IFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       136 ~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                        .|+++|+||+|....  ..+...+.
T Consensus       219 --~pvilVlNK~Dl~~~--~el~~~~~  241 (550)
T 2qpt_A          219 --DKIRVVLNKADMVET--QQLMRVYG  241 (550)
T ss_dssp             --GGEEEEEECGGGSCH--HHHHHHHH
T ss_pred             --CCEEEEEECCCccCH--HHHHHHHH
Confidence              289999999998865  55554443

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.45  E-value=2e-13  Score=109.52  Aligned_cols=115  Identities=22%  Similarity=0.166  Sum_probs=71.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+++|++|+|||||+|.+++...... ..+   |....+ ..... .  ...+.++||||...    .. .      
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~---t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~----~~-~------   91 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDP---TLESTYRHQATI-DDEVVSMEILDTAGQED----TI-Q------   91 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCT---TCCEEEEEEEEE-TTEEEEEEEEECCCCCC----CH-H------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCC---CCCceEEEEEEE-CCEEEEEEEEECCCCCc----cc-c------
Confidence            48999999999999999999998764222 111   111111 12233 3  34589999999875    11 1      


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ...++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|...
T Consensus        92 -~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~  146 (196)
T 2atv_A           92 -REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH  146 (196)
T ss_dssp             -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred             -hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc
Confidence             1122345699999999974433322 234444544332 11238999999999764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.45  E-value=9.8e-12  Score=117.64  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC---------------------------------------------
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG---------------------------------------------   53 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~---------------------------------------------   53 (285)
                      .++|+|+|..++|||||+|+|+|...++.+....+                                             
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            37999999999999999999999876554432110                                             


Q ss_pred             ----cceeEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhc-cCCccEEEEEEeCCCCCCHHHH-HHH
Q 023214           54 ----VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMA-KDGIHAVLVVFSVRSRFSQEEE-AAL  125 (285)
Q Consensus        54 ----~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~-~~l  125 (285)
                          .+...-...+..+....++||||||+.....  .+.++...+...+..+ ...+|++++|+|+...++..+. ..+
T Consensus       131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll  210 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  210 (772)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred             CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence                0111111222232355689999999986321  1222222222222222 2567999999999767776665 344


Q ss_pred             HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          126 HSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       126 ~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..   .  ..|+++|+||+|....
T Consensus       211 ~~L~~---~--g~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          211 KEVDP---Q--GQRTIGVITKLDLMDE  232 (772)
T ss_dssp             HHHCT---T--CSSEEEEEECTTSSCT
T ss_pred             HHHHh---c--CCCEEEEEeCcccCCc
Confidence            43332   1  2389999999999865

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.45  E-value=1.4e-12  Score=113.27  Aligned_cols=115  Identities=12%  Similarity=0.025  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|++|+|||||++.|++......     .+|....+..... .+..+.|+||||...+...           ...
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------~~~  228 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----------WRH  228 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CCS-----------HHH
T ss_pred             ceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHHHH-----------HHH
Confidence            6999999999999999999998764221     1244444555555 6788999999997654322           122


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|++++-+.... ..+..+..... ....|++||+||+|....
T Consensus       229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~  281 (329)
T 3o47_A          229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA  281 (329)
T ss_dssp             HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc
Confidence            35678999999999755554332 22222221111 112389999999998765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.45  E-value=3.2e-13  Score=109.61  Aligned_cols=114  Identities=20%  Similarity=0.134  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC-CCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|++|+|||||++.+++.... ....+ .+...   ...... .+  ..+.++||||...+...           
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------   73 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF---SANVAV-DGQIVNLGLWDTAGQEDYSRL-----------   73 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCE---EEEEEC-SSCEEEEEEECCCCCCCCCC------------
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeE---EEEEEE-CCEEEEEEEEECCCcHHHHHH-----------
Confidence            89999999999999999999976532 22111 11111   122233 33  47899999998765322           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|+.++-+....  .++..+....+ .  .|+++|+||.|....
T Consensus        74 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           74 RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD  128 (212)
T ss_dssp             -CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC
T ss_pred             HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC
Confidence            12357789999999999754443332  45555555433 2  399999999997654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.44  E-value=5e-13  Score=117.20  Aligned_cols=130  Identities=15%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   91 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~   91 (285)
                      |.+......+|+|||.+++|||||+|+|+|.....  ....++|..+......+ .+..+.++||||+..........+.
T Consensus        65 f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~  141 (376)
T 4a9a_A           65 FDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGK  141 (376)
T ss_dssp             TTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHH
T ss_pred             ceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHH
Confidence            34444444799999999999999999999977533  23456788888888888 8899999999999754333333444


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc-ccCeEEEEEeCCCCC
Q 023214           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-IFDYMIVVFTGGDEL  150 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~iil~nk~D~~  150 (285)
                      .+...+    ..+|++++|+|+.+++..  ...+..-...++.. ...|.++++||.|..
T Consensus       142 ~~l~~i----~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          142 QVIAVA----RTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHHHH----HHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             HHHHHH----HhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            444443    446999999998754322  22222222222321 123788999999964

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1e-12  Score=122.79  Aligned_cols=118  Identities=15%  Similarity=0.221  Sum_probs=82.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccc-----------------------------CCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-----------------------------SSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|++|+|||||+|.|++........                             ...|+|....+....+ .+.
T Consensus       167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~~  245 (611)
T 3izq_1          167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA  245 (611)
T ss_dssp             CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SSC
T ss_pred             ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CCc
Confidence            4799999999999999999999764311100                             0136677776777777 688


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEE
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .++||||||+.+           +.......+..+|++++|+|++.+       +.......+..+.. ++.+   ++++
T Consensus       246 ~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~---~iIV  310 (611)
T 3izq_1          246 NFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NLII  310 (611)
T ss_dssp             EEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCC---EEEE
T ss_pred             eEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCC---eEEE
Confidence            999999999864           223344567789999999999642       23344444444433 2422   7999


Q ss_pred             EEeCCCCCCC
Q 023214          143 VFTGGDELED  152 (285)
Q Consensus       143 l~nk~D~~~~  152 (285)
                      ++||+|....
T Consensus       311 VvNKiDl~~~  320 (611)
T 3izq_1          311 AMNKMDNVDW  320 (611)
T ss_dssp             EEECTTTTTT
T ss_pred             EEecccccch
Confidence            9999998763

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.44  E-value=5.5e-13  Score=107.06  Aligned_cols=122  Identities=23%  Similarity=0.149  Sum_probs=72.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (285)
                      ....+|+|+|++|+|||||+|.+++..........  .+.......+.+ .+  ..+.++||||...+.   .    .+.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----~~~   90 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE--NPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG---G----WLR   90 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT--SCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---H----HHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC--cccceEEEEEEE-CCEEEEEEEEecCCCccch---h----hhH
Confidence            34589999999999999999999865432111111  122222223333 33  357789999986421   1    111


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .   .++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|....
T Consensus        91 ~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  145 (195)
T 3cbq_A           91 D---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARS  145 (195)
T ss_dssp             H---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTT
T ss_pred             H---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhcccc
Confidence            1   22446799999999975433322 234444444322 112489999999998643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.44  E-value=2.3e-13  Score=110.84  Aligned_cols=116  Identities=14%  Similarity=0.067  Sum_probs=70.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE--EEEEEeeC-----------CceEEEEeCCCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD-----------GQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~liDtpG~~~~~~~   85 (285)
                      ..+|+|+|++|+|||||+|.|++......    ...|....  ...+.+..           ...+.|+||||..     
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----   95 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-----   95 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence            37999999999999999999998664211    11122222  12222311           3469999999942     


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~  151 (285)
                            .+......++..+|++++|+|+.++.+...  ...++.......  ...|+++|+||+|...
T Consensus        96 ------~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~  155 (217)
T 2f7s_A           96 ------RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPD  155 (217)
T ss_dssp             ------HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             ------hHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence                  222233445678899999999974432222  112232222111  2348999999999764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.43  E-value=7.7e-13  Score=105.39  Aligned_cols=116  Identities=25%  Similarity=0.179  Sum_probs=70.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+|+|++|+|||||++.+++... .....   .|....+ ..... .+  ..+.|+||||...+...        . 
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~--------~-   86 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYD---PNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC--------E-   86 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT--------H-
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCCC-CcccC---CCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH--------H-
Confidence            37999999999999999999997763 22221   1222221 12222 33  45889999998754321        1 


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~  151 (285)
                         .++..+|++++|+|++++-+... ..++..+...... ....|+++|.||+|...
T Consensus        87 ---~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  141 (187)
T 3c5c_A           87 ---RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ  141 (187)
T ss_dssp             ---HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred             ---HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence               12456899999999975443333 2344445443210 01238999999999753

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.42  E-value=3.7e-14  Score=129.91  Aligned_cols=115  Identities=17%  Similarity=0.273  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+++|++|+|||||++.|++......  ...++|.....+...+..+..++||||||+.++.....           .
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~-----------~   71 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA-----------R   71 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-----------S
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-----------H
Confidence            7999999999999999999997664322  23455665555555553467899999999887654322           3


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|+.++..+.....+..+...   ..  |+++++||+|....
T Consensus        72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~v--PiIVViNKiDl~~~  119 (537)
T 3izy_P           72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDA---HV--PIVLAINKCDKAEA  119 (537)
T ss_dssp             SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---TC--CEEECCBSGGGTTT
T ss_pred             HHccCCEEEEEEECCCCccHHHHHHHHHHHHc---CC--cEEEEEeccccccc
Confidence            46678999999999888888888777766543   22  89999999998643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.42  E-value=1.2e-12  Score=120.23  Aligned_cols=117  Identities=16%  Similarity=0.197  Sum_probs=79.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc--c------------------cCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--R------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (285)
                      ..+|+++|++|+|||||++.|++......  +                  ....++|.........+ .+..++||||||
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTPG   91 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTPG   91 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECCC
Confidence            38999999999999999999986421100  0                  01223444444455556 678899999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.++..           ....++..+|++++|+|+.++........+..+...   ..  |+++++||+|....
T Consensus        92 ~~df~~-----------~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~---~i--piivviNK~Dl~~~  149 (529)
T 2h5e_A           92 HEDFSE-----------DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR---DT--PILTFMNKLDRDIR  149 (529)
T ss_dssp             STTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT---TC--CEEEEEECTTSCCS
T ss_pred             ChhHHH-----------HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc---CC--CEEEEEcCcCCccc
Confidence            987631           122345678999999999877777766666554331   22  89999999998765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.42  E-value=1.8e-12  Score=116.84  Aligned_cols=118  Identities=20%  Similarity=0.240  Sum_probs=82.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeEEEEEEEeeCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDG   68 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~   68 (285)
                      ...+|+++|+.++|||||++.|++.......                             ....++|....+....+ .+
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~   94 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EK   94 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CC
Confidence            3489999999999999999999755321100                             01146788777777777 67


Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCccccCeEE
Q 023214           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYMI  141 (285)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~i  141 (285)
                      ..++|+||||+.++           .......+..+|++++|+|+.++..       +..+..+..+... +.+   +++
T Consensus        95 ~~~~iiDTPGh~~f-----------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v~---~iI  159 (439)
T 3j2k_7           95 KHFTILDAPGHKSF-----------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVK---HLI  159 (439)
T ss_pred             eEEEEEECCChHHH-----------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CCC---eEE
Confidence            89999999997543           1222233557899999999976543       4555555555443 432   589


Q ss_pred             EEEeCCCCCC
Q 023214          142 VVFTGGDELE  151 (285)
Q Consensus       142 il~nk~D~~~  151 (285)
                      +++||+|...
T Consensus       160 vviNK~Dl~~  169 (439)
T 3j2k_7          160 VLINKMDDPT  169 (439)
T ss_pred             EEeecCCCcc
Confidence            9999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.42  E-value=9.2e-13  Score=104.72  Aligned_cols=112  Identities=22%  Similarity=0.165  Sum_probs=71.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (285)
                      ....+|+|+|++|+|||||+|.+++.... ....+   |.......+.+ .+  ..+.++||||...+.           
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~---t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------   81 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP---EGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ-----------   81 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT---TCEEEEEEEEE-TTEEEEEEEEECSSSCCHH-----------
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC---CcceEEEEEEE-CCEEEEEEEEECCCChhhh-----------
Confidence            34589999999999999999999876632 22222   21111223334 44  346789999976421           


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                           ++..+|++++|+|++++-+... ..++..+..... ....|++++.||+|..
T Consensus        82 -----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           82 -----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             -----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred             -----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence                 2345699999999975544444 344444443311 1234899999999974

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.42  E-value=3.4e-12  Score=113.64  Aligned_cols=115  Identities=18%  Similarity=0.230  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc------ccc--------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA------FKS--------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      .+|+++|+.++|||||++.|++...      +..        .....+.|....+..... .+..++|+||||+.+    
T Consensus         4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~----   78 (397)
T 1d2e_A            4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD----   78 (397)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH----
T ss_pred             EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH----
Confidence            7999999999999999999997421      000        001235566655544444 568899999999643    


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCe-EEEEEeCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE  151 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~iil~nk~D~~~  151 (285)
                             +.......+..+|++++|+|+.+......+..+..+... +-    | +++++||+|...
T Consensus        79 -------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~v----p~iivviNK~Dl~~  133 (397)
T 1d2e_A           79 -------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV----EHVVVYVNKADAVQ  133 (397)
T ss_dssp             -------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCS
T ss_pred             -------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CeEEEEEECcccCC
Confidence                   222334456789999999999878888887777666543 32    5 789999999875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.41  E-value=4.3e-13  Score=106.52  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=65.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeEEEEEEEe----eCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~-~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (285)
                      .+|+|+|++|+|||||++.+++.. .+..... .+............    .....+.++||||...+..          
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------   71 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----------   71 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHHHHT----------
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcc-eeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----------
Confidence            689999999999999999999863 2222111 11111211111111    1245789999999643211          


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCC-HH-HHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFS-QE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ....++.+.+++++|+|++++.+ .. -..++..+..... .  .|+++|.||+|....
T Consensus        72 -~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~  127 (184)
T 2zej_A           72 -THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE  127 (184)
T ss_dssp             -TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH
T ss_pred             -hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc
Confidence             11122345689999999865422 11 1234444444322 2  389999999997643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.41  E-value=1.6e-12  Score=123.27  Aligned_cols=118  Identities=25%  Similarity=0.363  Sum_probs=81.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC---Cccccc---------cc----CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILG---RRAFKS---------RA----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g---~~~~~~---------~~----~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      ...+|+|+|++|+|||||+|.|++   ......         ..    ...++|.........+ .+..++||||||+.+
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d   87 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcc
Confidence            348999999999999999999994   221000         00    0134555555566666 688899999999987


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..       ....+    +..+|++++|+|+.++.+..+...+..+... +  .  |+++++||+|....
T Consensus        88 f~~-------~~~~~----l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~--~--p~ilviNK~Dl~~~  142 (693)
T 2xex_A           88 FTV-------EVERS----LRVLDGAVTVLDAQSGVEPQTETVWRQATTY-G--V--PRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCH-------HHHHH----HHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--CEEEEEECTTSTTC
T ss_pred             hHH-------HHHHH----HHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-C--C--CEEEEEECCCcccc
Confidence            531       12222    3446999999999878888888888776553 2  2  89999999998765

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.41  E-value=2.5e-12  Score=121.93  Aligned_cols=119  Identities=22%  Similarity=0.302  Sum_probs=80.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC---Ccccc----ccc---------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILG---RRAFK----SRA---------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g---~~~~~----~~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      ...+|+|+|+.|+|||||++.|+.   .....    .+.         ...++|+........+ .+..++||||||+.+
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d   89 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVD   89 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccc
Confidence            348999999999999999999983   21000    000         0234566666666666 688899999999976


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      +.       .....+    +..+|++++|+|+.++.+......+..+... +  .  |+++++||+|....+
T Consensus        90 f~-------~~~~~~----l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~--~--p~ivviNKiD~~~~~  145 (691)
T 1dar_A           90 FT-------IEVERS----MRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-K--V--PRIAFANKMDKTGAD  145 (691)
T ss_dssp             CH-------HHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T--C--CEEEEEECTTSTTCC
T ss_pred             hH-------HHHHHH----HHHCCEEEEEEECCCCcchhhHHHHHHHHHc-C--C--CEEEEEECCCcccCC
Confidence            42       222223    3456999999999878888888777766553 2  2  899999999988653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.41  E-value=1.3e-12  Score=117.64  Aligned_cols=117  Identities=22%  Similarity=0.304  Sum_probs=74.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc-ccccc----------------------------cCCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR-AFKSR----------------------------ASSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|+.|+|||||++.|++.. .+...                            ....++|....+....+ .+.
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~~   84 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY   84 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CCe
Confidence            3799999999999999999998642 11100                            01245666666666666 678


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEE
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .++|+||||+.++.           ......+..+|++++|+|+.+.       +....+..+..+... +.+   ++++
T Consensus        85 ~~~iiDtpG~~~f~-----------~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~~~---~iiv  149 (435)
T 1jny_A           85 FFTIIDAPGHRDFV-----------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLD---QLIV  149 (435)
T ss_dssp             EEEECCCSSSTTHH-----------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCT---TCEE
T ss_pred             EEEEEECCCcHHHH-----------HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCC---eEEE
Confidence            89999999987531           1233456789999999999754       333444554444432 422   6899


Q ss_pred             EEeCCCCCC
Q 023214          143 VFTGGDELE  151 (285)
Q Consensus       143 l~nk~D~~~  151 (285)
                      ++||+|...
T Consensus       150 viNK~Dl~~  158 (435)
T 1jny_A          150 AVNKMDLTE  158 (435)
T ss_dssp             EEECGGGSS
T ss_pred             EEEcccCCC
Confidence            999999876

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.40  E-value=1e-12  Score=117.32  Aligned_cols=116  Identities=15%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc-------cccc----c----cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR-------AFKS----R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~-------~~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      ..+|+++|+.|+|||||++.|++..       .+..    .    ....+.|.......... .+..++|+||||+.++ 
T Consensus        11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f-   88 (405)
T 2c78_A           11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY-   88 (405)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG-
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH-
Confidence            3799999999999999999999731       0100    0    00124455544444544 5788999999998753 


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCe-EEEEEeCCCCCC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE  151 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~iil~nk~D~~~  151 (285)
                            ...+    ...+..+|++++|+|+.++........+..+... +-    | +++++||+|...
T Consensus        89 ------~~~~----~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~  142 (405)
T 2c78_A           89 ------IKNM----ITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVD  142 (405)
T ss_dssp             ------HHHH----HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCC
T ss_pred             ------HHHH----HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccC
Confidence                  1222    2335678999999999878888887777766653 32    5 889999999875

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.40  E-value=1.7e-13  Score=124.53  Aligned_cols=114  Identities=16%  Similarity=0.253  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+++|+.++|||||++.|++......  ...+.|.....+...+ .+..++|+||||+.++.....           .
T Consensus         5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~-----------~   70 (501)
T 1zo1_I            5 PVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRA-----------R   70 (501)
T ss_dssp             CCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBC-----------S
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHH-----------H
Confidence            7999999999999999999987543221  1234555555555555 567899999999987654321           3


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+|++++|+|+.++..+.....+..+... +  .  |+++++||+|....
T Consensus        71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-~--v--PiIVviNKiDl~~~  118 (501)
T 1zo1_I           71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-Q--V--PVVVAVNKIDKPEA  118 (501)
T ss_dssp             SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-T--C--CEEEEEECSSSSTT
T ss_pred             HHhhCCEEEEEeecccCccHHHHHHHHHHHhc-C--c--eEEEEEEecccccc
Confidence            45678999999999777666666666655542 2  2  89999999998653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.40  E-value=3.5e-13  Score=117.25  Aligned_cols=127  Identities=18%  Similarity=0.141  Sum_probs=78.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|.+|+|||||+|+|++......  .....|..+....+.+..+..++|+||||+.+.......+...+.+.+  
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--  234 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--  234 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH--
Confidence            3689999999999999999998764222  122344445555566633478999999997532111122333333333  


Q ss_pred             ccCCccEEEEEEeCCC---CCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRS---RFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~---~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                        ..+|++++|+|+++   +-+..+. .++..+......-...|+++|+||+|....
T Consensus       235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~  289 (342)
T 1lnz_A          235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA  289 (342)
T ss_dssp             --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence              34689999999974   3333332 333444443111123489999999998753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.39  E-value=1.7e-12  Score=104.44  Aligned_cols=116  Identities=19%  Similarity=0.194  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|++|+|||||++.|+|.......  ....+.......+.+ .+.  .+.++||||...+.....          
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~----------   72 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITS----------   72 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCH----------
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhH----------
Confidence            79999999999999999999987642211  112222233344444 443  467899999764432211          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ..+..++++++|+|+.+..+.... .++..+......  ..|++++.||+|...
T Consensus        73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~  124 (199)
T 2f9l_A           73 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRH  124 (199)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred             -HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence             124567999999998644443332 333444333222  238999999999753

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.39  E-value=1.2e-12  Score=121.56  Aligned_cols=114  Identities=18%  Similarity=0.242  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFDF   82 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~~~   82 (285)
                      ++|+++|++|+|||||++.|++.....  ..+.+.|.........+.                 ....++|+||||+.++
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            799999999999999999999765322  112233333222222220                 1125899999999887


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .....           ..+..+|++++|+|+.+++.......+..+... +  .  |+++++||+|...
T Consensus        84 ~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~--v--PiIVViNKiDl~~  136 (594)
T 1g7s_A           84 TTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-R--T--PFVVAANKIDRIH  136 (594)
T ss_dssp             TTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T--C--CEEEEEECGGGST
T ss_pred             HHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C--C--eEEEEeccccccc
Confidence            54322           345678999999999888888888888776652 2  2  8999999999864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.38  E-value=1.3e-11  Score=110.37  Aligned_cols=120  Identities=15%  Similarity=0.265  Sum_probs=79.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeEEEEEEEee--------------C--------CceEEEE
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLK--------------D--------GQVVNVI   74 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~li   74 (285)
                      ...+|+++|+.++|||||++.|+|...... .....+.|....+......              .        ...++++
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            348999999999999999999997642111 1112345555444332220              0        1579999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ||||+.+           +...+......+|++++|+|+.++. .......+..+.. ++..   |+++++||+|....
T Consensus        87 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~---~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           87 DSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGID---KIIIVQNKIDLVDE  150 (408)
T ss_dssp             ECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CEEEEEECTTSSCT
T ss_pred             ECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCC---eEEEEEEccCCCCH
Confidence            9999532           2223334456789999999998666 6666666665543 3433   79999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.38  E-value=3.4e-13  Score=126.80  Aligned_cols=118  Identities=19%  Similarity=0.311  Sum_probs=89.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc--ccC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--RAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      .++|+|+|+.++|||||...|+.......  +..              ..|+|+.....+..| .+..++||||||+.||
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence            46899999999999999999862211100  000              016677777777778 7889999999999997


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      .       .++.+.    +..+|++++|+|+..++....+..|+.+... +  .  |.++++||+|....+
T Consensus        81 ~-------~Ev~ra----L~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~--l--p~i~~INKmDr~~a~  135 (638)
T 3j25_A           81 L-------AEVYRS----LSVLDGAILLISAKDGVQAQTRILFHALRKM-G--I--PTIFFINKIDQNGID  135 (638)
T ss_dssp             H-------HHHHHH----HTTCSEEECCEESSCTTCSHHHHHHHHHHHH-T--C--SCEECCEECCSSSCC
T ss_pred             H-------HHHHHH----HHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C--C--CeEEEEeccccccCC
Confidence            3       334434    4556999999999889999999999988876 3  2  788999999988654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.38  E-value=5e-12  Score=102.80  Aligned_cols=119  Identities=22%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+|+|.+|+|||||+|.++|... +.....+.+.+..  ...+.+ .+.  .+.++||+|....          ...
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~--~~~i~~-~~~~~~l~~~Dt~g~~~~----------~~~  103 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTY--ERTLMV-DGESATIILLDMWENKGE----------NEW  103 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEE--EEEEEE-TTEEEEEEEECCTTTTHH----------HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeE--EEEEEE-CCeeeEEEEeecCCCcch----------hhh
Confidence            37899999999999999999997542 2222222232222  122333 443  4678999985420          111


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ....++..+|++++|+|++++-+.... .++..+..... ....|+++|.||+|+..
T Consensus       104 l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~  159 (211)
T 2g3y_A          104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR  159 (211)
T ss_dssp             HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence            223456788999999999754333332 23333332211 11248999999999763

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.38  E-value=6.1e-12  Score=112.50  Aligned_cols=119  Identities=18%  Similarity=0.284  Sum_probs=79.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeEEEEEEEeeC----------------------CceEEEEe
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKD----------------------GQVVNVID   75 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~liD   75 (285)
                      ..+|+++|+.++|||||++.|+|..... ......+.|....+....+..                      ...++++|
T Consensus        10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   89 (410)
T 1kk1_A           10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   89 (410)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence            4799999999999999999999764211 111123456555444333210                      15799999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      |||+.+           +...+......+|++++|+|+.++. .......+..+... +..   |+++++||+|....
T Consensus        90 tPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~---~iivviNK~Dl~~~  152 (410)
T 1kk1_A           90 APGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK  152 (410)
T ss_dssp             CSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH
T ss_pred             CCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCC---cEEEEEECccCCCH
Confidence            999642           2222333445679999999998666 67777777666543 433   79999999998764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.37  E-value=5e-12  Score=120.40  Aligned_cols=120  Identities=26%  Similarity=0.337  Sum_probs=85.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc-------c---------cCCCCcceeEEEEEEEeeC------CceEEEEe
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-------R---------ASSSGVTSTCEMQRTVLKD------GQVVNVID   75 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~------~~~~~liD   75 (285)
                      ..++|+|+|+.++|||||..+|+-......       +         -...++|+.....+..|..      +..++|||
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            347999999999999999999872221100       0         1123677777777777732      45799999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      |||+.||.       .++.+++..+    |++++|+|+..++.......|+.+... +  .  |.++++||+|....+
T Consensus        92 TPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~-~--l--p~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           92 TPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY-G--V--PRIVYVNKMDRQGAN  153 (709)
T ss_dssp             CCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH-T--C--CEEEEEECSSSTTCC
T ss_pred             CCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc-C--C--CeEEEEccccccCcc
Confidence            99999983       4455555444    999999999889999999999988775 2  3  899999999987653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.37  E-value=4.4e-12  Score=114.87  Aligned_cols=116  Identities=20%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc-cccc-------------cc---------------CCCCcceeEEEEEEEeeCCce
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR-AFKS-------------RA---------------SSSGVTSTCEMQRTVLKDGQV   70 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~-~~~~-------------~~---------------~~~~~t~~~~~~~~~~~~~~~   70 (285)
                      .+|+++|+.++|||||+|.|++.. .+..             +.               ...++|....+..... .+..
T Consensus         8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~~   86 (458)
T 1f60_A            8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQ   86 (458)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCce
Confidence            799999999999999999998642 1100             00               0135666666666666 6788


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCccccCeEEEE
Q 023214           71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMIVV  143 (285)
Q Consensus        71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~iil  143 (285)
                      ++|+||||+.++           .......+..+|++++|+|+.++...       ..+..+..+.. .+-+   +++++
T Consensus        87 ~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v~---~iivv  151 (458)
T 1f60_A           87 VTVIDAPGHRDF-----------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVR---QLIVA  151 (458)
T ss_dssp             EEEEECCCCTTH-----------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCC---EEEEE
T ss_pred             EEEEECCCcHHH-----------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCCC---eEEEE
Confidence            999999997642           22233457789999999999744322       34444444333 2322   58999


Q ss_pred             EeCCCCCC
Q 023214          144 FTGGDELE  151 (285)
Q Consensus       144 ~nk~D~~~  151 (285)
                      +||+|...
T Consensus       152 iNK~Dl~~  159 (458)
T 1f60_A          152 VNKMDSVK  159 (458)
T ss_dssp             EECGGGGT
T ss_pred             EEcccccc
Confidence            99999874

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.36  E-value=1.1e-11  Score=117.72  Aligned_cols=118  Identities=20%  Similarity=0.301  Sum_probs=82.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-ccc-cc--------------CCCCcceeEEEEEEEeeCC-------ceEEEEe
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRA-FKS-RA--------------SSSGVTSTCEMQRTVLKDG-------QVVNVID   75 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~~-~~--------------~~~~~t~~~~~~~~~~~~~-------~~~~liD   75 (285)
                      ..+|+|+|+.|+|||||++.|+.... +.. +.              ...++|+........+ .+       ..++|||
T Consensus        10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7           10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINIID   88 (704)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEEe
Confidence            47999999999999999999974321 100 00              0235566666566666 44       7899999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      |||+.++.       .+..    .++..+|++++|+|+.+.........+..+... +  .  |+++++||+|....+
T Consensus        89 TPG~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~--i--p~ilviNKiD~~~~~  150 (704)
T 2rdo_7           89 TPGHVDFT-------IEVE----RSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-K--V--PRIAFVNKMDRMGAN  150 (704)
T ss_pred             CCCccchH-------HHHH----HHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-C--C--CEEEEEeCCCccccc
Confidence            99998752       2222    234567999999999877777777777665432 2  2  899999999987653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.36  E-value=3.9e-12  Score=118.17  Aligned_cols=118  Identities=20%  Similarity=0.254  Sum_probs=73.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-c------------cCCCCcceeEEEEEEEeeC----CceEEEEeCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-R------------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLFD   81 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-~------------~~~~~~t~~~~~~~~~~~~----~~~~~liDtpG~~~   81 (285)
                      ..+|+++|+.|+|||||++.|++...... .            ....+.|.........|..    +..++||||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            47999999999999999999985321000 0            0123556655555565531    35789999999876


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +       ..++...+    ..+|++++|+|+.++.+..+...+..+...   ..  |+++++||+|....
T Consensus        84 F-------~~ev~~~l----~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~i--piIvViNKiDl~~a  138 (599)
T 3cb4_D           84 F-------SYEVSRSL----AACEGALLVVDAGQGVEAQTLANCYTAMEM---DL--EVVPVLNKIDLPAA  138 (599)
T ss_dssp             G-------HHHHHHHH----HHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TC--EEEEEEECTTSTTC
T ss_pred             H-------HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CC--CEEEeeeccCcccc
Confidence            4       22333333    345999999999878888777776665542   22  89999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.36  E-value=9.3e-12  Score=99.46  Aligned_cols=116  Identities=22%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV--VNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|++|+|||||++.|+|...+...  ..+++.......+.+ .+..  +.++||||...+.....          
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~----------   96 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITS----------   96 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCH----------
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhH----------
Confidence            69999999999999999999987753221  122233333344445 5544  45699999875433222          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ..+..++++++|+|..+..+... ..++..+......  ..+++++.||.|...
T Consensus        97 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~  148 (191)
T 1oix_A           97 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRH  148 (191)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             -HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence             12456789999999864333222 1233333332222  238999999999753

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.36  E-value=5.2e-12  Score=117.20  Aligned_cols=118  Identities=20%  Similarity=0.302  Sum_probs=76.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc-cc-c-----------cCCCCcceeEEEEEEEee--C--CceEEEEeCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAF-KS-R-----------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD   81 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~-~~-~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~~   81 (285)
                      ..+|+++|+.++|||||++.|++.... .. +           ....++|.........|.  .  ...++||||||+.+
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            379999999999999999999753210 00 0           001344554444445442  1  25688999999986


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.       .++.+.    +..+|++++|+|+.++.+......+..+...   ..  |+++++||+|....
T Consensus        86 F~-------~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~i--piIvviNKiDl~~a  140 (600)
T 2ywe_A           86 FS-------YEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ---DL--VIIPVINKIDLPSA  140 (600)
T ss_dssp             GH-------HHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---TC--EEEEEEECTTSTTC
T ss_pred             HH-------HHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC---CC--CEEEEEeccCcccc
Confidence            42       233333    3466999999999888888887777665542   22  89999999998765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.36  E-value=2.2e-12  Score=115.10  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-ccC------------CCCcceeEEEEEEEe----eCCceEEEEeCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-RAS------------SSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFD   81 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-~~~------------~~~~t~~~~~~~~~~----~~~~~~~liDtpG~~~   81 (285)
                      ..+|+++|++|+|||||+|.|++...... +..            ....+.........+    .....++++||||+.+
T Consensus         8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~   87 (403)
T 3sjy_A            8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV   87 (403)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence            48999999999999999999998542110 000            000000000000000    0125789999999754


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +       ...+.    ..+..+|++++|+|+.++. .......+..+... +..   |+++++||+|....
T Consensus        88 ~-------~~~~~----~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~---~iivviNK~Dl~~~  144 (403)
T 3sjy_A           88 L-------MATML----SGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVVSK  144 (403)
T ss_dssp             G-------HHHHH----HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH
T ss_pred             H-------HHHHH----HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCC---CEEEEEECccccch
Confidence            2       22222    3346789999999998776 56666676666554 433   89999999998765

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.35  E-value=3.6e-12  Score=113.15  Aligned_cols=91  Identities=15%  Similarity=0.069  Sum_probs=46.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe--------------------eC---CceEEEEeC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------KD---GQVVNVIDT   76 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~liDt   76 (285)
                      .+|+|+|.+|+|||||+|+|+|.....+.  ..++|.........+                    ..   ...+.++||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~--~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIAN--YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            37999999999999999999988732111  122333322222110                    01   246899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC
Q 023214           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR  116 (285)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~  116 (285)
                      ||+......    .+.+...+...+..+|++++|+|+.+.
T Consensus        79 pG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhh----hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            999743211    122333334567889999999999643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.35  E-value=8.7e-12  Score=117.79  Aligned_cols=120  Identities=27%  Similarity=0.305  Sum_probs=84.0

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--ccccC--------------CCCcceeEEEEEEEeeCCceEEEEe
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF--KSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVID   75 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liD   75 (285)
                      +.+..+  .+|+|+|++|+|||||++.|++....  ..+..              ..+++.........+ .+..++|+|
T Consensus         4 ~~~~~~--~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliD   80 (665)
T 2dy1_A            4 EGGAMI--RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLD   80 (665)
T ss_dssp             --CCCE--EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEE
T ss_pred             CccCCC--cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEe
Confidence            344556  89999999999999999999954322  01100              124455555555555 678899999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      |||+.++       ...+..+    +..+|++++|+|+.+.++......+..+... +  .  |+++++||+|..
T Consensus        81 TpG~~~f-------~~~~~~~----l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~--i--p~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDF-------VGEIRGA----LEAADAALVAVSAEAGVQVGTERAWTVAERL-G--L--PRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGG-------HHHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T--C--CEEEEEECGGGC
T ss_pred             CCCccch-------HHHHHHH----HhhcCcEEEEEcCCcccchhHHHHHHHHHHc-c--C--CEEEEecCCchh
Confidence            9998754       1223333    3356899999999878998888888777653 3  2  899999999987

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.34  E-value=5.2e-12  Score=111.18  Aligned_cols=102  Identities=16%  Similarity=0.241  Sum_probs=75.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|+.++|||||++.|+          ..++|....+....+ .+..++++||||+.++       ...+..    .
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~   80 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A   80 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence            89999999999999999998          124455555555656 6778999999998764       122222    2


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe-CCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDE  149 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n-k~D~  149 (285)
                      +..+|++++|+| ........+..+..+... +.+   .+++++| |+|.
T Consensus        81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~i~---~~ivvvNNK~Dl  125 (370)
T 2elf_A           81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-GFK---HGIIALTRSDST  125 (370)
T ss_dssp             HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-TCC---EEEEEECCGGGS
T ss_pred             HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-CCC---eEEEEEEeccCC
Confidence            356799999999 777777777777766553 432   3378888 9998

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.01  E-value=1.2e-13  Score=111.51  Aligned_cols=118  Identities=18%  Similarity=0.067  Sum_probs=72.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ...+|+++|++|+|||||++.+++...... ..+.  +........... ....+.++||||...+..           .
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~   94 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPT--VFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-----------L   94 (204)
Confidence            348999999999999999999987653221 1111  111001111220 234566999999764321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...++..+|++++|+|++++.+..+.  .++..+.....   ..|+++|+||+|....
T Consensus        95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  149 (204)
Confidence            22346678999999998655444432  44455544322   2389999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.32  E-value=4.4e-12  Score=101.46  Aligned_cols=119  Identities=22%  Similarity=0.158  Sum_probs=68.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+|+|++|+|||||+|.++|... +.....+.+.+..  ...+.+ .+.  .+.++||+|........         
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~---------   73 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTY--ERTLMV-DGESATIILLDMWENKGENEWL---------   73 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEE--EEEEEE-TTEEEEEEEECCCCC----CTT---------
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEE--EEEEEE-CCeEEEEEEEEeccCcchhhhH---------
Confidence            37999999999999999999996432 2221112222221  122334 443  46789999965421100         


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ...++..+|++++|+|++++-+.... .++..+..... ....|+++|.||+|...
T Consensus        74 -~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           74 -HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR  128 (192)
T ss_dssp             -GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGG
T ss_pred             -HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhc
Confidence             01224456999999999755443332 33444444321 11238999999999753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.32  E-value=7.6e-12  Score=111.38  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=80.3

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   86 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~   86 (285)
                      ..++++++..+  ..|+|+|+||||||||+|+|++......+.  ...|.......+.+.....++++||||+.+.....
T Consensus       147 ~~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~--~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~  222 (416)
T 1udx_A          147 KRRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG  222 (416)
T ss_dssp             EEEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS
T ss_pred             EeeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCCccccCc--ccceecceeeEEEecCcceEEEEeccccccchhhh
Confidence            34677888888  799999999999999999999886432222  12233333444555223789999999986431111


Q ss_pred             HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCcc-ccCeEEEEEeCCCCCCC
Q 023214           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKK-IFDYMIVVFTGGDELED  152 (285)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~-~~~~~iil~nk~D~~~~  152 (285)
                      ..+...+.+    ....++.+++|+|+. +-...+... ...+... ... ...|.++++||+|....
T Consensus       223 ~~L~~~fl~----~~era~~lL~vvDls-~~~~~~ls~g~~el~~l-a~aL~~~P~ILVlNKlDl~~~  284 (416)
T 1udx_A          223 KGLGLEFLR----HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAY-DPALLRRPSLVALNKVDLLEE  284 (416)
T ss_dssp             CCSCHHHHH----HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHH-CHHHHHSCEEEEEECCTTSCH
T ss_pred             hhhhHHHHH----HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHH-hHHhhcCCEEEEEECCChhhH
Confidence            001111211    234678999999986 222222221 1222211 110 11388999999997754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.30  E-value=1.5e-11  Score=105.58  Aligned_cols=118  Identities=15%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+++|.+|+||||+++.+.+...+ ......++|........  .....+.||||||...+.....        ....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~-~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l--------~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQP-LDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY--------DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCS-GGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH--------HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCC-CccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh--------hhhhh
Confidence            5899999999999999988866432 22222333443333332  2346799999999987642110        01234


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHH-HHHHH--hCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALH-SLQTL--FGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~--~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +++++++++|+|++++ ......++. ++...  ..+.  .|++++.||.|+...
T Consensus        70 yr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~--ipillvgNK~DL~~~  121 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPS--INIEVLIHKVDGLSE  121 (331)
T ss_dssp             HTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTT--CEEEEECCCCCSSCS
T ss_pred             ccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCC--CcEEEEEECcccCch
Confidence            7889999999999766 333333332 22221  1233  399999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.29  E-value=2.8e-11  Score=103.69  Aligned_cols=127  Identities=20%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC-cccccccCC----CCcceeEEEEEEEe---eCCceEEEEeCCCCCCCCCC---cHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR-RAFKSRASS----SGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAG---SEF   88 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~-~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~---~~~   88 (285)
                      .+|+|+|+||+|||||+|+|+|. ..+..+...    ...+..........   .....++++||||+.+....   ...
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~   98 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT   98 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence            78899999999999999999997 433333100    01121111111111   11356899999999543110   011


Q ss_pred             HHHHHH----HHHhhc---------cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           89 VGKEIV----KCIGMA---------KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        89 ~~~~~~----~~~~~~---------~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +...+.    .++...         ...+++++|++++. .+++..+.   ..++.. ....  ++++|+||.|....
T Consensus        99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l-~~~~--~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAI-HNKV--NIVPVIAKADTLTL  170 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHH-TTTS--CEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHH-HhcC--CEEEEEEeCCCCCH
Confidence            121111    222111         12346688888764 35888775   334443 2223  89999999998764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.28  E-value=1.7e-11  Score=106.12  Aligned_cols=115  Identities=20%  Similarity=0.119  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV--VNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|.+|+|||||++.+++.... ....  +.+.......... .+..  +.++||||...+...           .
T Consensus       156 ~~i~i~G~~~~GKssli~~~~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------~  220 (332)
T 2wkq_A          156 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYI--PTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRL-----------R  220 (332)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-CSCC--CCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTT-----------G
T ss_pred             eEEEEECCCCCChHHHHHHHHhCCCC-cccC--CcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHH-----------H
Confidence            79999999999999999999966532 2111  1121111222233 4444  559999998654321           2


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|++++.+..+.  .++..+....+ .  .|+++|+||+|....
T Consensus       221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD  274 (332)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SCEEEEEECHHHHTC
T ss_pred             HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-C--CcEEEEEEchhcccc
Confidence            2447789999999999755444443  34555555433 2  399999999997654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.28  E-value=4.8e-13  Score=124.64  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c---------------cCCCCcceeEEEEEEEeeCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDG   68 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~   68 (285)
                      ...+|+++|+.++|||||+|.|++......              +               ....++|+...+..+.+ .+
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~  254 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DK  254 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CC
Confidence            347899999999999999999974321100              0               01235677666666666 57


Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhCccccCeEE
Q 023214           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-----F--SQEEEAALHSLQTLFGKKIFDYMI  141 (285)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~~~i  141 (285)
                      ..++||||||+.++....           ...+..+|++|+|+|+..+     +  ....+..+..+... +.+   ++|
T Consensus       255 ~~i~iiDTPGh~~f~~~~-----------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gip---~iI  319 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGM-----------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GIS---EIV  319 (592)
T ss_dssp             ----CCEEESSSEEEEEC-----------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SCC---CEE
T ss_pred             eEEEEEECCChHHHHHHH-----------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCC---eEE
Confidence            889999999988653211           1234568999999998643     3  55566666555543 432   589


Q ss_pred             EEEeCCCCCC
Q 023214          142 VVFTGGDELE  151 (285)
Q Consensus       142 il~nk~D~~~  151 (285)
                      +++||+|...
T Consensus       320 vviNKiDl~~  329 (592)
T 3mca_A          320 VSVNKLDLMS  329 (592)
T ss_dssp             EEEECGGGGT
T ss_pred             EEEecccccc
Confidence            9999999875

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.27  E-value=9.3e-12  Score=113.01  Aligned_cols=117  Identities=19%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-cc------------------------cc----cCCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRA-FK------------------------SR----ASSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~------------------------~~----~~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|+.++|||||++.|++... +.                        ..    ....++|+...+..+.+ .+.
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~  121 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHR  121 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSE
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCe
Confidence            47999999999999999999974211 00                        00    01235666666666666 678


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCccccCeEEE
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .++||||||+.++..           .....+..+|++++|+|+.++.       .+..+..+..+.. .+-+   ++++
T Consensus       122 ~~~iiDtPGh~~f~~-----------~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~vp---~iiv  186 (467)
T 1r5b_A          122 RFSLLDAPGHKGYVT-----------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HLVV  186 (467)
T ss_dssp             EEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SEEE
T ss_pred             EEEEEECCCcHHHHH-----------HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCCC---EEEE
Confidence            899999999876421           1223457789999999997542       1234444444433 2321   4899


Q ss_pred             EEeCCCCCC
Q 023214          143 VFTGGDELE  151 (285)
Q Consensus       143 l~nk~D~~~  151 (285)
                      ++||+|...
T Consensus       187 viNK~Dl~~  195 (467)
T 1r5b_A          187 VINKMDEPS  195 (467)
T ss_dssp             EEECTTSTT
T ss_pred             EEECccCCC
Confidence            999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.24  E-value=5.1e-11  Score=116.36  Aligned_cols=119  Identities=18%  Similarity=0.239  Sum_probs=79.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc---------c---c--cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRA---------F---K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~---------~---~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      +..+|+++|+.++|||||++.|++...         +   +  ......|+|+......... .+..++|+||||+.+  
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed--  371 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD--  371 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH--
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH--
Confidence            347999999999999999999986410         0   0  0001234555544444444 578899999999653  


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                               +.......+..+|++++|+|+.++.....+..+..+... +-+   ++|+++||+|....
T Consensus       372 ---------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gIP---~IIVVINKiDLv~d  427 (1289)
T 3avx_A          372 ---------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GVP---YIIVFLNKCDMVDD  427 (1289)
T ss_dssp             ---------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TCS---CEEEEEECCTTCCC
T ss_pred             ---------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CCC---eEEEEEeecccccc
Confidence                     222333457789999999999877777777777666553 431   37899999998753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.24  E-value=9.9e-12  Score=120.20  Aligned_cols=116  Identities=25%  Similarity=0.337  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEee---------------CCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------------DGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~~   69 (285)
                      ..+|+|+|+.|+|||||++.|++........              ...++|+........+.               .+.
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   98 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence            4799999999999999999998642111100              11234544444444442               156


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCC
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~  149 (285)
                      .++||||||+.++..       +..    .++..+|++++|+|+.++.+..+...+..+...   ..  |+++++||+|.
T Consensus        99 ~i~liDTPG~~df~~-------~~~----~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~~--p~ilviNK~D~  162 (842)
T 1n0u_A           99 LINLIDSPGHVDFSS-------EVT----AALRVTDGALVVVDTIEGVCVQTETVLRQALGE---RI--KPVVVINKVDR  162 (842)
T ss_dssp             EEEEECCCCCCSSCH-------HHH----HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---TC--EEEEEEECHHH
T ss_pred             eEEEEECcCchhhHH-------HHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---CC--CeEEEEECCCc
Confidence            799999999988642       122    234567999999999888888887766655432   22  89999999997


Q ss_pred             C
Q 023214          150 L  150 (285)
Q Consensus       150 ~  150 (285)
                      .
T Consensus       163 ~  163 (842)
T 1n0u_A          163 A  163 (842)
T ss_dssp             H
T ss_pred             c
Confidence            6

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.24  E-value=2.4e-11  Score=112.25  Aligned_cols=118  Identities=18%  Similarity=0.187  Sum_probs=71.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE----EEEee---CCceEEEEeCCCCCCCCCCcHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVLK---DGQVVNVIDTPGLFDFSAGSEFVGK   91 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~   91 (285)
                      ..+|+|+|.+|+|||||+|.+++...........+.+......    .....   .+..+.++||||...+......   
T Consensus        41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~---  117 (535)
T 3dpu_A           41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF---  117 (535)
T ss_dssp             EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH---
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH---
Confidence            3899999999999999999999876421111111222111000    01111   2567999999997665433321   


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                              .+..+|++++|+|+++.  .....++..+..... .  .|+++|.||+|....
T Consensus       118 --------~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~  165 (535)
T 3dpu_A          118 --------FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPS  165 (535)
T ss_dssp             --------HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTT
T ss_pred             --------HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccc
Confidence                    13457999999998632  334556666666533 2  399999999998754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.15  E-value=4e-10  Score=105.42  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCc-ce-------------eEEEE-----------------------
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGV-TS-------------TCEMQ-----------------------   61 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~-~~~~~~~~~-t~-------------~~~~~-----------------------   61 (285)
                      +.|+|+|+||||||||+++|+|...| .+|...... ..             ...+.                       
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~  125 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI  125 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence            36999999999999999999998655 344322111 00             00000                       


Q ss_pred             --------------EEEeeCCceEEEEeCCCCCCC--CCCcHHHHHHHHHHHhhccCCc-cEEEEEEeCCCCCCHHHHHH
Q 023214           62 --------------RTVLKDGQVVNVIDTPGLFDF--SAGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAA  124 (285)
Q Consensus        62 --------------~~~~~~~~~~~liDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~  124 (285)
                                    .........++++|.||+...  .+-+......+...+..+.... ..++.+++++..+.  ....
T Consensus       126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~  203 (608)
T 3szr_A          126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA  203 (608)
T ss_dssp             HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred             cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence                          011112356999999998752  2323344555666655544443 45555666532332  3334


Q ss_pred             HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          125 LHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       125 l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..+...-...  .++|+|+||+|....
T Consensus       204 l~la~~v~~~g--~rtI~VlTK~Dlv~~  229 (608)
T 3szr_A          204 LSMAQEVDPEG--DRTIGILTKPDLVDK  229 (608)
T ss_dssp             HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred             HHHHHHHhhcC--CceEEEecchhhcCc
Confidence            55555543222  389999999998855

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.15  E-value=4.7e-11  Score=104.12  Aligned_cols=90  Identities=16%  Similarity=0.049  Sum_probs=55.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS   83 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~   83 (285)
                      .+|+|||.+|+|||||+|+|++.......  ..++|..+....+.+.+                +..+.++||||+..+.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~--~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN--YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            68999999999999999999987632211  12233333333344411                2469999999997532


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  115 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~  115 (285)
                      ..    .+.+...+...++.+|++++|+|+.+
T Consensus        81 ~~----~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SK----GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HH----HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cc----cchHHHHHHHHHHhcCeEEEEEecCC
Confidence            11    11121122233567899999999863

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.10  E-value=3.3e-12  Score=112.41  Aligned_cols=123  Identities=20%  Similarity=0.253  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc-----cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (285)
                      .+|+++|.+|+|||||+|+|+|.....     ......++|.....  ...  +..+.++||||+.++......+..+..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence            689999999999999999999864211     11122344444332  222  334899999999876533322222222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+. ....++.++|+++++..+..+...++..+.   +..  .|+++++||.|....
T Consensus       237 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          237 KLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred             HHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc
Confidence            2221 134578888999874221111222222221   222  289999999998865

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.09  E-value=1.6e-10  Score=102.65  Aligned_cols=131  Identities=20%  Similarity=0.159  Sum_probs=77.2

Q ss_pred             cccCccccCCCCC------------------ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcc-e-eEEEEEEEe
Q 023214            6 IDDDWELTSPSNG------------------ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-S-TCEMQRTVL   65 (285)
Q Consensus         6 ~~~~~~~~~~~~~------------------~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t-~-~~~~~~~~~   65 (285)
                      +.+++++.+..|.                  ...++|+|+||+|||||+|+|+|...+..+....+.+ . ...+... .
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~  116 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-H  116 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-C
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-c
Confidence            4566777777772                  1299999999999999999999987766654432211 1 1112111 2


Q ss_pred             eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (285)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n  145 (285)
                      .....++++|+||+......   . .++...+.  +...+.+++ ++.+ +...........+... +.    |++++.|
T Consensus       117 ~~~~~ltv~D~~g~~~~~~~---~-~~~L~~~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~~----p~~lV~t  183 (413)
T 1tq4_A          117 PNIPNVVFWDLPGIGSTNFP---P-DTYLEKMK--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM-KK----EFYFVRT  183 (413)
T ss_dssp             SSCTTEEEEECCCGGGSSCC---H-HHHHHHTT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-TC----EEEEEEC
T ss_pred             cccCCeeehHhhcccchHHH---H-HHHHHHcC--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc-CC----CeEEEEe
Confidence            12346899999998643211   1 22222221  223345554 7776 3444444444444332 32    8999999


Q ss_pred             CCCCC
Q 023214          146 GGDEL  150 (285)
Q Consensus       146 k~D~~  150 (285)
                      +.|.+
T Consensus       184 kpdll  188 (413)
T 1tq4_A          184 KVDSD  188 (413)
T ss_dssp             CHHHH
T ss_pred             cCccc
Confidence            98865

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.07  E-value=1.2e-10  Score=101.42  Aligned_cols=33  Identities=18%  Similarity=0.062  Sum_probs=27.4

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .++++....+  ..|+++|++|+|||||+|.|++.
T Consensus        47 ~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           47 DAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             HHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHH
Confidence            4456666666  89999999999999999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.06  E-value=3.2e-10  Score=99.41  Aligned_cols=90  Identities=20%  Similarity=0.163  Sum_probs=55.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--------------------CCceEEEEeCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL   79 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~liDtpG~   79 (285)
                      .+|+|+|.+|+|||||+|.|++.......  ...+|.........++                    .+..+.++||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~--~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAAN--YPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSS--CCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccC--CCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            57999999999999999999986421111  1122222222222221                    2356999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 023214           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  115 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~  115 (285)
                      .........++..+...    ++.+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence            86533222233333332    456799999999863

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.03  E-value=2.6e-12  Score=113.17  Aligned_cols=122  Identities=21%  Similarity=0.228  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc-----ccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR-----AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (285)
                      .+|+++|.+|+|||||+|+|++..     ....+ ...++|.....+  ..  +..+.++||||+.+.......+..+..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~--~~--~~~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEI--PL--ESGATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEE--EC--STTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEE--Ee--CCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            689999999999999999999872     22121 233455543332  22  345899999999876432222222222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+. ....+|.++|+++++..+-.+...++..+.   +..  .|+++++||.|....
T Consensus       238 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          238 KIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR  289 (369)
T ss_dssp             HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred             HHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence            2221 124679999999984221111222222222   222  289999999998744

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.03  E-value=3.8e-10  Score=99.37  Aligned_cols=94  Identities=16%  Similarity=0.107  Sum_probs=50.5

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC----------------CceEEEEeC
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDT   76 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDt   76 (285)
                      .+..+  .+|+|||.+|+|||||+|+|+|.....+  ...++|..+....+.+.+                +..+.++||
T Consensus        18 ~i~~~--~kvgIVG~pnvGKSTL~n~Ltg~~~~~~--~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt   93 (396)
T 2ohf_A           18 RFGTS--LKIGIVGLPNVGKSTFFNVLTNSQASAE--NFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI   93 (396)
T ss_dssp             CSSSC--CCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred             hccCC--CEEEEECCCCCCHHHHHHHHHCCCcccc--CCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence            34455  8999999999999999999999864211  122334444344444311                235899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (285)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~  114 (285)
                      ||+.......    ..+...+...+..+|++++|+|+.
T Consensus        94 pGl~~~as~~----~glg~~~l~~ir~aD~Il~VvD~~  127 (396)
T 2ohf_A           94 AGLVKGAHNG----QGLGNAFLSHISACDGIFHLTRAF  127 (396)
T ss_dssp             CC---------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred             CCcccccchh----hHHHHHHHHHHHhcCeEEEEEecC
Confidence            9998643221    222222334456789999999985

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.01  E-value=2.4e-10  Score=99.41  Aligned_cols=35  Identities=23%  Similarity=0.145  Sum_probs=31.1

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +.+++++.+..|  ..++|+|+||+|||||+|+|+|.
T Consensus        44 ~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           44 LIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             HHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHh
Confidence            456788888888  89999999999999999999854

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.01  E-value=5.6e-10  Score=92.60  Aligned_cols=150  Identities=11%  Similarity=0.043  Sum_probs=85.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceE
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVV   71 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~   71 (285)
                      +.++++++|+.+++|  ..++|+|+||+|||||+++|+|...+.+|.... +..          ....+..+.. .-...
T Consensus        14 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~-~l~~~   90 (243)
T 1mv5_A           14 SEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS-AIMAG   90 (243)
T ss_dssp             SSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS-CCCCE
T ss_pred             CCceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCC-ccccc
Confidence            456899999999999  899999999999999999999998766553211 000          0011111100 00011


Q ss_pred             EEEeCCCCC-CCCCCcHHHHHHHHHHHhh--ccC----CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214           72 NVIDTPGLF-DFSAGSEFVGKEIVKCIGM--AKD----GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-  143 (285)
Q Consensus        72 ~liDtpG~~-~~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-  143 (285)
                      ++.|...+. ........+ ......+..  ...    +.+.  .+-.....+|+++++++..++.+...+   +++++ 
T Consensus        91 tv~enl~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~gl~~--~~~~~~~~LSgGq~qrv~lAral~~~p---~lllLD  164 (243)
T 1mv5_A           91 TIRENLTYGLEGDYTDEDL-WQVLDLAFARSFVENMPDQLNT--EVGERGVKISGGQRQRLAIARAFLRNP---KILMLD  164 (243)
T ss_dssp             EHHHHTTSCTTSCSCHHHH-HHHHHHHTCTTTTTSSTTGGGC--EESTTSBCCCHHHHHHHHHHHHHHHCC---SEEEEE
T ss_pred             cHHHHHhhhccCCCCHHHH-HHHHHHhChHHHHHhCccchhc--hhccCcCcCCHHHHHHHHHHHHHhcCC---CEEEEE
Confidence            333322221 111111111 111111111  000    1111  111123479999999999999887765   67777 


Q ss_pred             --EeCCCCCCCChhcHHHHhhh
Q 023214          144 --FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 --~nk~D~~~~~~~~l~~~l~~  163 (285)
                        ++.+|....  ..+.+.+..
T Consensus       165 EPts~LD~~~~--~~i~~~l~~  184 (243)
T 1mv5_A          165 EATASLDSESE--SMVQKALDS  184 (243)
T ss_dssp             CCSCSSCSSSC--CHHHHHHHH
T ss_pred             CCcccCCHHHH--HHHHHHHHH
Confidence              899998776  666666653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.01  E-value=2.6e-10  Score=92.62  Aligned_cols=138  Identities=15%  Similarity=0.063  Sum_probs=80.8

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      ++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.... +....      .. ...-.++.+.|.+... 
T Consensus        23 ~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------~~-~~~i~~v~q~~~~~~~-   92 (214)
T 1sgw_A           23 PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------KV-KGKIFFLPEEIIVPRK-   92 (214)
T ss_dssp             EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------GG-GGGEEEECSSCCCCTT-
T ss_pred             eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------hh-cCcEEEEeCCCcCCCC-
Confidence            6788999999999  899999999999999999999988765543211 10000      00 1112234445554321 


Q ss_pred             CCcHHHH-------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214           84 AGSEFVG-------------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG  147 (285)
Q Consensus        84 ~~~~~~~-------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~  147 (285)
                      .+..+..             ..+...+...  +.+..   -.....+|+++++++..++.+...+   +++++   ++.+
T Consensus        93 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~--gl~~~---~~~~~~LSgGqkqrv~laraL~~~p---~lllLDEPts~L  164 (214)
T 1sgw_A           93 ISVEDYLKAVASLYGVKVNKNEIMDALESV--EVLDL---KKKLGELSQGTIRRVQLASTLLVNA---EIYVLDDPVVAI  164 (214)
T ss_dssp             SBHHHHHHHHHHHTTCCCCHHHHHHHHHHT--TCCCT---TSBGGGSCHHHHHHHHHHHHTTSCC---SEEEEESTTTTS
T ss_pred             CCHHHHHHHHHHhcCCchHHHHHHHHHHHc--CCCcC---CCChhhCCHHHHHHHHHHHHHHhCC---CEEEEECCCcCC
Confidence            1111110             0111111111  11110   0112369999999999999887765   67777   7888


Q ss_pred             CCCCCChhcHHHHhh
Q 023214          148 DELEDNDETLEDYLG  162 (285)
Q Consensus       148 D~~~~~~~~l~~~l~  162 (285)
                      |....  ..+.+.+.
T Consensus       165 D~~~~--~~l~~~l~  177 (214)
T 1sgw_A          165 DEDSK--HKVLKSIL  177 (214)
T ss_dssp             CTTTH--HHHHHHHH
T ss_pred             CHHHH--HHHHHHHH
Confidence            86655  55555554

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.00  E-value=4.2e-09  Score=95.82  Aligned_cols=122  Identities=15%  Similarity=0.170  Sum_probs=71.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCCcce-----------eEEEEEE-----------------
Q 023214           18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGVTS-----------TCEMQRT-----------------   63 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~------g~~~~~~~~~~~~~t~-----------~~~~~~~-----------------   63 (285)
                      ...+|+++|++|+||||+++.|+      |..+......+.....           ...++..                 
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            34799999999999999999999      6654222111100000           0001110                 


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCe-EEE
Q 023214           64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIV  142 (285)
Q Consensus        64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ii  142 (285)
                      .+ .+..++||||||....   ......++......  ..+|.+++|+|+....+  ....+..+...    .  | .++
T Consensus       180 ~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~----~--~i~gv  245 (504)
T 2j37_W          180 KN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK----V--DVASV  245 (504)
T ss_dssp             HH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH----H--CCCCE
T ss_pred             HH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh----c--CceEE
Confidence            01 4567999999998752   33344555444332  26789999999965543  22223333321    1  5 489


Q ss_pred             EEeCCCCCCCC
Q 023214          143 VFTGGDELEDN  153 (285)
Q Consensus       143 l~nk~D~~~~~  153 (285)
                      |+||+|.....
T Consensus       246 VlNK~D~~~~~  256 (504)
T 2j37_W          246 IVTKLDGHAKG  256 (504)
T ss_dssp             EEECTTSCCCC
T ss_pred             EEeCCccccch
Confidence            99999987553

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.99  E-value=5.5e-10  Score=91.50  Aligned_cols=44  Identities=23%  Similarity=0.174  Sum_probs=39.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|++++.|  ..++|+|+||||||||+++|+|...+.+|
T Consensus        16 ~~~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   59 (224)
T 2pcj_A           16 GYEILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTEG   59 (224)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred             CEeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            346789999999999  89999999999999999999998876554

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.99  E-value=8.9e-10  Score=96.55  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ...+|+|+|++|+|||||++.|++
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            348999999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.98  E-value=6e-10  Score=93.01  Aligned_cols=44  Identities=20%  Similarity=0.125  Sum_probs=39.1

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +..+++++|+.+.+|  ..++|+|+||||||||+++|+|...+.+|
T Consensus        27 ~~~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G   70 (256)
T 1vpl_A           27 KKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSG   70 (256)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CEEEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            346788999999999  89999999999999999999998876554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.98  E-value=1.1e-09  Score=90.41  Aligned_cols=43  Identities=21%  Similarity=0.128  Sum_probs=38.7

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ++++++|+.+..|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        19 ~~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~   61 (235)
T 3tif_A           19 YALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE   61 (235)
T ss_dssp             EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eeEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCceE
Confidence            4789999999999  899999999999999999999988766543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.98  E-value=1.9e-09  Score=99.60  Aligned_cols=107  Identities=20%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCC-CcHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSA-GSEFVGKEI   93 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtpG~~~~~~-~~~~~~~~~   93 (285)
                      +..+|+|+|++|+|||||+|.|+|... ++.+....++|.....+...+  ..+..+.|+||||+.+... +.......+
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f  116 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF  116 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence            347899999999999999999999874 222222223343332222222  1467899999999987543 222211211


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (285)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~  130 (285)
                      .-....+    +  ++|+++...++..+...+..+..
T Consensus       117 ala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          117 ALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE  147 (592)
T ss_dssp             HHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence            1111111    2  45566545788888776666544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.97  E-value=8.2e-10  Score=96.48  Aligned_cols=23  Identities=30%  Similarity=0.154  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++|||||||+|.|+|.
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            89999999999999999999974

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.97  E-value=7.3e-10  Score=92.83  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=39.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+..|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        36 ~~~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~G   79 (263)
T 2olj_A           36 SLEVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDEG   79 (263)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CEEEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence            346789999999999  89999999999999999999998876554

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.96  E-value=1.2e-09  Score=89.73  Aligned_cols=135  Identities=13%  Similarity=0.075  Sum_probs=78.7

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      +.++++++|+.+++|  ..++|+|+||+|||||+++|+|...+.+|..             .+ .+.-.++.+.|.+...
T Consensus        20 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-------------~~-~g~i~~v~q~~~~~~~   83 (229)
T 2pze_A           20 GTPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH-SGRISFCSQFSWIMPG   83 (229)
T ss_dssp             SCCSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-------------EE-CSCEEEECSSCCCCSB
T ss_pred             CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCccEE-------------EE-CCEEEEEecCCcccCC
Confidence            357899999999999  8999999999999999999999887654321             12 2222334444444321


Q ss_pred             CCCcHHHH--------HHHHHHHhhc-----cCC-ccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           83 SAGSEFVG--------KEIVKCIGMA-----KDG-IHAVL-VVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        83 ~~~~~~~~--------~~~~~~~~~~-----~~~-~~~~l-~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                        +..+..        ......+...     ... ++..- .+-.....+|+++++++..++.+...+   +++++   +
T Consensus        84 --tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lllLDEPt  158 (229)
T 2pze_A           84 --TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA---DLYLLDSPF  158 (229)
T ss_dssp             --CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC---SEEEEESTT
T ss_pred             --CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEECcc
Confidence              111100        0011111000     000 00000 011112479999999999999988765   67777   7


Q ss_pred             eCCCCCCCChhcHHHH
Q 023214          145 TGGDELEDNDETLEDY  160 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~  160 (285)
                      +.+|....  ..+.+.
T Consensus       159 s~LD~~~~--~~i~~~  172 (229)
T 2pze_A          159 GYLDVLTE--KEIFES  172 (229)
T ss_dssp             TTSCHHHH--HHHHHH
T ss_pred             cCCCHHHH--HHHHHH
Confidence            77775444  444443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.96  E-value=1.2e-09  Score=96.48  Aligned_cols=94  Identities=17%  Similarity=0.112  Sum_probs=60.7

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC-----------------ceEEEEe
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVID   75 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liD   75 (285)
                      .+..+  .+|+|+|+||+|||||+|+|+|....... ...++|..+....+.+ .+                 ..+.++|
T Consensus        16 ~v~~g--~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD   91 (392)
T 1ni3_A           16 RPGNN--LKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD   91 (392)
T ss_dssp             SSSSC--CEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred             cccCC--CEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence            44556  89999999999999999999996541121 1223344444444444 32                 3589999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214           76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (285)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~  114 (285)
                      +||+.......+.+...+.    ..+..+|++++|+++.
T Consensus        92 ~pGl~~~~s~~e~L~~~fl----~~ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           92 IAGLTKGASTGVGLGNAFL----SHVRAVDAIYQVVRAF  126 (392)
T ss_dssp             TGGGCCCCCSSSSSCHHHH----HHHTTCSEEEEEEECC
T ss_pred             ccccccCCcHHHHHHHHHH----HHHHHHHHHHHHHhcc
Confidence            9999764333222222332    3345789999999985

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.94  E-value=1.8e-10  Score=96.25  Aligned_cols=47  Identities=19%  Similarity=0.157  Sum_probs=30.6

Q ss_pred             CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHh-CccccCeEEEEEeCCCCCC
Q 023214          103 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLF-GKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       103 ~~~~~l~v~~~~~~--~~~~~-~~~l~~~~~~~-~~~~~~~~iil~nk~D~~~  151 (285)
                      ++|++++|+|++++  .+... ..++..+.... ...  .|+++|.||+|+..
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~  212 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGV  212 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBC
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEcccccc
Confidence            58999999999755  55544 24444444431 122  38999999999754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.93  E-value=5.8e-11  Score=99.09  Aligned_cols=45  Identities=16%  Similarity=0.198  Sum_probs=39.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++|+.+++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        17 ~~~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   61 (253)
T 2nq2_C           17 ENFLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRPIQGK   61 (253)
T ss_dssp             TTEEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCeEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            456889999999999  899999999999999999999988765543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.92  E-value=1.5e-09  Score=97.84  Aligned_cols=143  Identities=15%  Similarity=0.168  Sum_probs=81.5

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--Ccc---------------eeEEEEEEEe----
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--GVT---------------STCEMQRTVL----   65 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~--~~t---------------~~~~~~~~~~----   65 (285)
                      ..++++.+..|  ..|+|+|+||+|||||++.|+|...+..+....  +.+               ..+.+..+..    
T Consensus       283 ~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p  360 (503)
T 2yhs_A          283 DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS  360 (503)
T ss_dssp             BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred             CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence            45788888888  899999999999999999999765433322100  000               0011111110    


Q ss_pred             ------------eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hhc-cCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023214           66 ------------KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI---GMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQ  129 (285)
Q Consensus        66 ------------~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~  129 (285)
                                  ..+..+.|+||+|....   ......++....   ... ...++-+++|+|+..+  ......+..+.
T Consensus       361 ~~tV~e~l~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~  435 (503)
T 2yhs_A          361 ASVIFDAIQAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFH  435 (503)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHH
Confidence                        12346889999998642   233334443332   222 1236788889997523  22223333444


Q ss_pred             HHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214          130 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       130 ~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                      ..++     ...+++||+|..... ..+-.++.
T Consensus       436 ~~~~-----itgvIlTKLD~takg-G~~lsi~~  462 (503)
T 2yhs_A          436 EAVG-----LTGITLTKLDGTAKG-GVIFSVAD  462 (503)
T ss_dssp             HHTC-----CSEEEEECGGGCSCC-THHHHHHH
T ss_pred             hhcC-----CCEEEEEcCCCcccc-cHHHHHHH
Confidence            3333     567899999975443 33444443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.91  E-value=3.2e-09  Score=87.63  Aligned_cols=44  Identities=20%  Similarity=0.271  Sum_probs=39.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++|+.+++|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (237)
T 2cbz_A           17 DPPTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVEG   60 (237)
T ss_dssp             SCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred             CCceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            357899999999999  89999999999999999999998876554

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.91  E-value=3.1e-10  Score=96.98  Aligned_cols=44  Identities=27%  Similarity=0.307  Sum_probs=39.3

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +.++++++||.+++|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        66 ~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G  109 (306)
T 3nh6_A           66 GRETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDISSG  109 (306)
T ss_dssp             TCEEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred             CCceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence            356789999999999  89999999999999999999998876554

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.89  E-value=1.4e-09  Score=91.72  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=38.6

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ..+.+++|++++.|  ..++|+|+||||||||+++|+|...+.+|
T Consensus        21 ~~~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G   63 (275)
T 3gfo_A           21 THALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKPSSG   63 (275)
T ss_dssp             CEEEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            34889999999999  89999999999999999999998876554

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.86  E-value=6.4e-09  Score=88.07  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=41.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~   88 (285)
                      .+|+++|.+|+|||||+|+|+|......+.. .++|......  .  .+..+.++||||+..+......
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWV--K--VGKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCCHH
T ss_pred             ceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEE--E--eCCCEEEEECcCcCCCCCCCHH
Confidence            7999999999999999999999875444332 3455544322  2  2557999999999987655443

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.86  E-value=4.4e-09  Score=91.85  Aligned_cols=46  Identities=24%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++|+++..|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        14 ~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (362)
T 2it1_A           14 GNFTALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSGK   59 (362)
T ss_dssp             SSSEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCceE
Confidence            3456788999999999  899999999999999999999998766543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.86  E-value=3.2e-09  Score=92.40  Aligned_cols=46  Identities=22%  Similarity=0.247  Sum_probs=40.2

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+++++|+++..|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        26 g~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   71 (355)
T 1z47_A           26 GGARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKGD   71 (355)
T ss_dssp             TSTTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCCEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence            3456889999999999  899999999999999999999998766543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.84  E-value=8.1e-09  Score=89.91  Aligned_cols=46  Identities=17%  Similarity=0.282  Sum_probs=40.5

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++|+.+..|  ..++|+||||||||||+++|+|...+.+|.
T Consensus        15 ~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~   60 (359)
T 3fvq_A           15 QNTPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDSGE   60 (359)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCCcE
Confidence            3456788999999999  899999999999999999999998776653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.82  E-value=4.4e-09  Score=92.20  Aligned_cols=46  Identities=30%  Similarity=0.385  Sum_probs=40.3

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++|+.+..|  ..++|+|+||||||||+++|+|-..+.+|.
T Consensus        14 g~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~   59 (381)
T 3rlf_A           14 GEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGD   59 (381)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCeE
Confidence            3456788999999999  899999999999999999999998766543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.82  E-value=5.4e-09  Score=91.10  Aligned_cols=42  Identities=17%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .+.+++||.++.|  ..++|+|+||||||||+++|+|...+.+|
T Consensus        42 ~aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~~G   83 (366)
T 3tui_C           42 QALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEG   83 (366)
T ss_dssp             EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence            4788999999999  89999999999999999999998876654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.81  E-value=5.8e-09  Score=90.94  Aligned_cols=145  Identities=14%  Similarity=0.163  Sum_probs=80.6

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEee--CCceEEEEeCCCCCCC
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLK--DGQVVNVIDTPGLFDF   82 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~   82 (285)
                      +++++|+++..|  ..++|+|+||||||||+++|+|...+.+|.... +..... .......  ...--++...+.++..
T Consensus        20 vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~-~~~~~~~~~~r~ig~v~Q~~~l~~~   96 (353)
T 1oxx_K           20 ALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS-NGKLIVPPEDRKIGMVFQTWALYPN   96 (353)
T ss_dssp             EEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE-TTEESSCGGGSCEEEEETTSCCCTT
T ss_pred             eEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc-cccccCChhhCCEEEEeCCCccCCC
Confidence            788999999999  899999999999999999999998766554211 111100 0000000  0111234444443321


Q ss_pred             C-------------C-CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214           83 S-------------A-GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT  145 (285)
Q Consensus        83 ~-------------~-~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n  145 (285)
                      .             . ........+...+...  +.+.+  .-..-..+|+++++++.+.+.+...+   +++++   ++
T Consensus        97 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~--~~~~~~~LSGGq~QRvalAraL~~~P---~lLLLDEP~s  169 (353)
T 1oxx_K           97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--DIHHV--LNHFPRELSGAQQQRVALARALVKDP---SLLLLDEPFS  169 (353)
T ss_dssp             SCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT--TCGGG--TTSCGGGSCHHHHHHHHHHHHHTTCC---SEEEEESTTT
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchH--hcCChhhCCHHHHHHHHHHHHHHhCC---CEEEEECCcc
Confidence            0             0 0111112222222211  11110  00011369999999999999887765   67777   78


Q ss_pred             CCCCCCCChhcHHHHhh
Q 023214          146 GGDELEDNDETLEDYLG  162 (285)
Q Consensus       146 k~D~~~~~~~~l~~~l~  162 (285)
                      .+|....  ..+.+.+.
T Consensus       170 ~LD~~~r--~~l~~~l~  184 (353)
T 1oxx_K          170 NLDARMR--DSARALVK  184 (353)
T ss_dssp             TSCGGGH--HHHHHHHH
T ss_pred             cCCHHHH--HHHHHHHH
Confidence            8886554  55555544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.80  E-value=1.4e-08  Score=86.74  Aligned_cols=134  Identities=16%  Similarity=0.233  Sum_probs=75.8

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCc-------c----eeEEEEEEEee----
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGV-------T----STCEMQRTVLK----   66 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~-------t----~~~~~~~~~~~----   66 (285)
                      ..+++.+..|  ..++++|+||+|||||++.|+|...+..+..      ....       .    ..+.+..+...    
T Consensus        91 ~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~  168 (302)
T 3b9q_A           91 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  168 (302)
T ss_dssp             CSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred             cccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence            3567777778  8999999999999999999998765433321      0000       0    01112111110    


Q ss_pred             -------------CCceEEEEeCCCCCCCCCCcHHHHHHH---HHHHhh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023214           67 -------------DGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQ  129 (285)
Q Consensus        67 -------------~~~~~~liDtpG~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~  129 (285)
                                   .+....++||+|....   ......++   +..+.. ....|+-+++|+|+...++....  +..+.
T Consensus       169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~  243 (302)
T 3b9q_A          169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFN  243 (302)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchHHhcCCCCcc---hhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHH
Confidence                         1234678999998743   22222222   222222 23457777788887545554432  23333


Q ss_pred             HHhCccccCeEEEEEeCCCCCCCC
Q 023214          130 TLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus       130 ~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      ...+     ..++++||.|....-
T Consensus       244 ~~~g-----~t~iiiThlD~~~~~  262 (302)
T 3b9q_A          244 EVVG-----ITGLILTKLDGSARG  262 (302)
T ss_dssp             HHTC-----CCEEEEECCSSCSCT
T ss_pred             HhcC-----CCEEEEeCCCCCCcc
Confidence            3222     577889999976543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.79  E-value=1.6e-08  Score=85.81  Aligned_cols=132  Identities=12%  Similarity=0.082  Sum_probs=76.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      ..+++++|+.+++|  ..++|+|+||+|||||+++|+|...+.+|..             .+ .+.-.++.+.|.++.. 
T Consensus        51 ~~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I-------------~~-~g~i~~v~Q~~~l~~~-  113 (290)
T 2bbs_A           51 TPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH-SGRISFCSQNSWIMPG-  113 (290)
T ss_dssp             CCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEEEEE-------------EC-CSCEEEECSSCCCCSS-
T ss_pred             ceEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-------------EE-CCEEEEEeCCCccCcc-
Confidence            46788999999999  8999999999999999999999887655432             11 1222233334443321 


Q ss_pred             CCcHH-HH------HHHHHHHhh--------ccCC-ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           84 AGSEF-VG------KEIVKCIGM--------AKDG-IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        84 ~~~~~-~~------~~~~~~~~~--------~~~~-~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                       +..+ +.      ..+...+..        .++. .+.  .+-.....+|+++++++..++.+...+   +++++   +
T Consensus       114 -tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~LSgGq~QRv~lAraL~~~p---~lllLDEPt  187 (290)
T 2bbs_A          114 -TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNI--VLGEGGITLSGGQRARISLARAVYKDA---DLYLLDSPF  187 (290)
T ss_dssp             -BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGC--BC----CCCCHHHHHHHHHHHHHHSCC---SEEEEESTT
T ss_pred             -cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccc--hhcCccCcCCHHHHHHHHHHHHHHCCC---CEEEEECCc
Confidence             1111 00      000001100        0110 000  001112479999999999999888765   67777   7


Q ss_pred             eCCCCCCCChhcHHHH
Q 023214          145 TGGDELEDNDETLEDY  160 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~  160 (285)
                      +.+|....  ..+.+.
T Consensus       188 s~LD~~~~--~~i~~~  201 (290)
T 2bbs_A          188 GYLDVLTE--KEIFES  201 (290)
T ss_dssp             TTCCHHHH--HHHHHH
T ss_pred             ccCCHHHH--HHHHHH
Confidence            77775444  444443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.79  E-value=4.3e-09  Score=91.81  Aligned_cols=45  Identities=22%  Similarity=0.177  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +..+++++|+++..|  ..++|+|+||||||||+++|+|-..+.+|.
T Consensus        15 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (359)
T 2yyz_A           15 KVKAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSGE   59 (359)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CEEEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCccE
Confidence            345788999999999  899999999999999999999998766543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.78  E-value=7.2e-10  Score=97.19  Aligned_cols=45  Identities=24%  Similarity=0.261  Sum_probs=39.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +..+++++|+.+..|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        23 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   67 (372)
T 1v43_A           23 NFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGR   67 (372)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CEEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCceE
Confidence            345788999999999  899999999999999999999998766553

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.77  E-value=1e-08  Score=89.97  Aligned_cols=45  Identities=20%  Similarity=0.239  Sum_probs=39.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +..+++++|+.+..|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        15 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (372)
T 1g29_1           15 EVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQ   59 (372)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCccE
Confidence            345788999999999  899999999999999999999998766553

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.77  E-value=9.9e-09  Score=95.68  Aligned_cols=147  Identities=15%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccce----------eEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS----------TCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~----------~~~~~~~~~~~~~~~~   72 (285)
                      .++++++|+++++|  ..++|+|+||+|||||++.|+|...|..|.... +...          ...+..+.. .-...+
T Consensus       356 ~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~-~l~~~t  432 (582)
T 3b5x_A          356 KPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV-HLFNDT  432 (582)
T ss_pred             ccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCC-cccccc
Confidence            56899999999999  899999999999999999999988766553211 1000          011111100 000001


Q ss_pred             EEeCCCCCC-CCCCcHHHHHHHHHHHhhc------cCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214           73 VIDTPGLFD-FSAGSEFVGKEIVKCIGMA------KDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-  143 (285)
Q Consensus        73 liDtpG~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-  143 (285)
                      +-|...+.. ...+.+    ++...+...      ..-++++--.+ +.+..+|+++++++...+..+.++   +++++ 
T Consensus       433 v~eni~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p---~illlD  505 (582)
T 3b5x_A          433 IANNIAYAAEGEYTRE----QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA---PVLILD  505 (582)
T ss_pred             HHHHHhccCCCCCCHH----HHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC---CEEEEE
Confidence            111111111 111111    122221111      00111211112 224579999999999999988765   77777 


Q ss_pred             --EeCCCCCCCChhcHHHHhh
Q 023214          144 --FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 --~nk~D~~~~~~~~l~~~l~  162 (285)
                        ++..|....  ..+.+.+.
T Consensus       506 Epts~LD~~~~--~~i~~~l~  524 (582)
T 3b5x_A          506 EATSALDTESE--RAIQAALD  524 (582)
T ss_pred             CccccCCHHHH--HHHHHHHH
Confidence              788886554  45555554

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.77  E-value=6.1e-10  Score=93.31  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=37.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .++++++|+.++ |  ..++|+|+||+|||||+++|+|.. |.+|.
T Consensus        18 ~~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~   59 (263)
T 2pjz_A           18 RFSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSGN   59 (263)
T ss_dssp             EEEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEEE
T ss_pred             ceeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCcE
Confidence            457899999999 9  899999999999999999999988 76543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.76  E-value=6.1e-09  Score=90.52  Aligned_cols=41  Identities=29%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      +++++|+.+..|  ..++|+|+||+|||||+++|+|-..+.+|
T Consensus        15 ~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G   55 (348)
T 3d31_A           15 SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSG   55 (348)
T ss_dssp             EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence            788999999999  89999999999999999999999876654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.75  E-value=2.2e-08  Score=87.39  Aligned_cols=137  Identities=16%  Similarity=0.244  Sum_probs=77.2

Q ss_pred             CccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC---CCcc--------------eeEEEEEEEee-----
Q 023214            9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SGVT--------------STCEMQRTVLK-----   66 (285)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~---~~~t--------------~~~~~~~~~~~-----   66 (285)
                      .+++.+..|  ..|+|+|+||+|||||++.|+|...+..+...   ..+.              ..+.+..+...     
T Consensus       149 ~l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          149 ELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             SCCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             CcceecCCC--eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            467777777  89999999999999999999987654332210   0000              01112211110     


Q ss_pred             ------------CCceEEEEeCCCCCCCCCCcHHHHHHHH---HHHh-hccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214           67 ------------DGQVVNVIDTPGLFDFSAGSEFVGKEIV---KCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (285)
Q Consensus        67 ------------~~~~~~liDtpG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~  130 (285)
                                  .+....++||.|....   ......++.   ..+. .....|+-+++|+|+...++....  +..+..
T Consensus       227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~  301 (359)
T 2og2_A          227 TVLSKAVKRGKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNE  301 (359)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHhcCCChh---hhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHH
Confidence                        1234679999998753   222222222   2222 223457777888887545544332  233333


Q ss_pred             HhCccccCeEEEEEeCCCCCCCChhcH
Q 023214          131 LFGKKIFDYMIVVFTGGDELEDNDETL  157 (285)
Q Consensus       131 ~~~~~~~~~~iil~nk~D~~~~~~~~l  157 (285)
                      ..+     ..+|++||.|....-+..+
T Consensus       302 ~~g-----~t~iiiThlD~~~~gG~~l  323 (359)
T 2og2_A          302 VVG-----ITGLILTKLDGSARGGCVV  323 (359)
T ss_dssp             HTC-----CCEEEEESCTTCSCTHHHH
T ss_pred             hcC-----CeEEEEecCcccccccHHH
Confidence            222     5788899999765543333

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.71  E-value=4.7e-09  Score=87.96  Aligned_cols=45  Identities=20%  Similarity=0.227  Sum_probs=39.7

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++|+.+..|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        18 ~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~   62 (262)
T 1b0u_A           18 GHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA   62 (262)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            456789999999999  899999999999999999999988766543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.71  E-value=4.7e-09  Score=88.12  Aligned_cols=45  Identities=24%  Similarity=0.268  Sum_probs=39.9

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      ++.++.+++|+.+..|  ..++|+|+||||||||+++|+|...+.+|
T Consensus        22 ~~~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   66 (266)
T 4g1u_C           22 QQQALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSPSHG   66 (266)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred             CCeeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            3456789999999999  89999999999999999999998876654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.70  E-value=4.4e-09  Score=87.88  Aligned_cols=45  Identities=20%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++|+++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        19 ~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~   63 (257)
T 1g6h_A           19 EFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR   63 (257)
T ss_dssp             TEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CEeeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            446789999999999  899999999999999999999998766553

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.69  E-value=1.4e-07  Score=78.70  Aligned_cols=76  Identities=13%  Similarity=-0.046  Sum_probs=41.4

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHH-HHHH-HHHhCccccCeEEEEEeC
Q 023214           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSL-QTLFGKKIFDYMIVVFTG  146 (285)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~-~~~~~~~~~~~~iil~nk  146 (285)
                      ..+.|+||||..++.     ....+...+...+.. +++++++|+....+..+... +... .......  .|+++|+||
T Consensus       109 ~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~iv~NK  180 (262)
T 1yrb_A          109 NDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLG--ATTIPALNK  180 (262)
T ss_dssp             CSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT--SCEEEEECC
T ss_pred             CCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccC--CCeEEEEec
Confidence            369999999975321     111111112223345 88899998854555544321 1111 1111112  289999999


Q ss_pred             CCCCCC
Q 023214          147 GDELED  152 (285)
Q Consensus       147 ~D~~~~  152 (285)
                      +|....
T Consensus       181 ~D~~~~  186 (262)
T 1yrb_A          181 VDLLSE  186 (262)
T ss_dssp             GGGCCH
T ss_pred             cccccc
Confidence            997654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.68  E-value=5.6e-09  Score=86.37  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++|+.+++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        18 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   62 (240)
T 1ji0_A           18 AIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK   62 (240)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CeeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            345788999999999  899999999999999999999988766543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.68  E-value=5.8e-08  Score=82.97  Aligned_cols=123  Identities=16%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCc-----------ceeEEEEEEEe----------------e
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGV-----------TSTCEMQRTVL----------------K   66 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~-----------t~~~~~~~~~~----------------~   66 (285)
                      ..|+|+|+||||||||++.|+|...+..+..      ....           ...+.+..+..                .
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~  182 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA  182 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence            7999999999999999999997654433211      0000           00111111110                0


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHH---HHHHHhh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEE
Q 023214           67 DGQVVNVIDTPGLFDFSAGSEFVGKE---IVKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .+..+.++||+|....   ......+   ....+.. ....|+.+++++|+..+.  .....+..+....+     ..++
T Consensus       183 ~~~d~~llDt~G~~~~---~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~i  252 (304)
T 1rj9_A          183 RGYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGV  252 (304)
T ss_dssp             HTCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEE
T ss_pred             CCCCEEEecCCCCCCc---hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEE
Confidence            1335779999998643   2222222   2223322 234578788899975332  22233333333333     6789


Q ss_pred             EEeCCCCCCC
Q 023214          143 VFTGGDELED  152 (285)
Q Consensus       143 l~nk~D~~~~  152 (285)
                      ++||.|....
T Consensus       253 ivTh~d~~a~  262 (304)
T 1rj9_A          253 IVTKLDGTAK  262 (304)
T ss_dssp             EEECTTSSCC
T ss_pred             EEECCccccc
Confidence            9999997644

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.68  E-value=9.8e-09  Score=95.73  Aligned_cols=149  Identities=14%  Similarity=0.063  Sum_probs=82.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccce----------eEEEEEEEeeCCceEE
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS----------TCEMQRTVLKDGQVVN   72 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~----------~~~~~~~~~~~~~~~~   72 (285)
                      .++.+++|+.+++|  ..++|+|+||+|||||++.|+|...+..|.... +...          ...+.++.. .-...+
T Consensus       356 ~~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~t  432 (587)
T 3qf4_A          356 DPVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET-VLFSGT  432 (587)
T ss_dssp             CCSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSC-CCCSEE
T ss_pred             CcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCC-cCcCcc
Confidence            56889999999999  899999999999999999999988766543211 1100          011111100 000012


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHH-----HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIV-----KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      +-|...+.....+.+.+.....     ..+.....+.+.  .+-..+..+|+++++++...+..+.++   +++++   +
T Consensus       433 v~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~--~~~~~~~~LSgGqrQrv~lARal~~~p---~illlDEpt  507 (587)
T 3qf4_A          433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS--RVERGGRNFSGGQKQRLSIARALVKKP---KVLILDDCT  507 (587)
T ss_dssp             HHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGC--EECSSSCSSCHHHHHHHHHHHHHHTCC---SEEEEESCC
T ss_pred             HHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhh--HhcCCCCCcCHHHHHHHHHHHHHHcCC---CEEEEECCc
Confidence            2222112211122222222111     111111113333  222334589999999999999988765   67777   6


Q ss_pred             eCCCCCCCChhcHHHHhh
Q 023214          145 TGGDELEDNDETLEDYLG  162 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~  162 (285)
                      +..|....  ..+.+.+.
T Consensus       508 s~LD~~~~--~~i~~~l~  523 (587)
T 3qf4_A          508 SSVDPITE--KRILDGLK  523 (587)
T ss_dssp             TTSCHHHH--HHHHHHHH
T ss_pred             ccCCHHHH--HHHHHHHH
Confidence            77775433  44444443

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.67  E-value=1.5e-08  Score=83.66  Aligned_cols=40  Identities=25%  Similarity=0.202  Sum_probs=34.4

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++|+.++. +  .++|+|+||||||||+++|+|...+.+|
T Consensus        14 ~l~~isl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G   53 (240)
T 2onk_A           14 FRLNVDFEMGR-D--YCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             EEEEEEEEECS-S--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEeeeEEEECC-E--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            46788898887 3  8999999999999999999999876554

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.67  E-value=7.1e-09  Score=86.08  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=39.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +..+++++|+.+++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        21 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   65 (247)
T 2ff7_A           21 SPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQ   65 (247)
T ss_dssp             SCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            356889999999999  899999999999999999999998765543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.67  E-value=6.4e-09  Score=87.88  Aligned_cols=45  Identities=20%  Similarity=0.198  Sum_probs=39.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        33 ~~~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~   77 (279)
T 2ihy_A           33 GKTILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATSGT   77 (279)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CEEEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence            346789999999999  899999999999999999999998766553

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.66  E-value=1.3e-07  Score=84.30  Aligned_cols=122  Identities=15%  Similarity=0.121  Sum_probs=69.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh------CCcccccccCCC---------------CcceeEEEEEEE----------e--
Q 023214           19 ERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSS---------------GVTSTCEMQRTV----------L--   65 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~------g~~~~~~~~~~~---------------~~t~~~~~~~~~----------~--   65 (285)
                      +..|+++|++|+||||++..|+      |..+......+.               ++..........          .  
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999988      433311111000               110000000000          0  


Q ss_pred             eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (285)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n  145 (285)
                      ..+..+.||||||....   +.....++......  ..+|.+++|+|+....  ........+...     .....+++|
T Consensus       180 ~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~gq--~a~~~a~~f~~~-----~~i~gVIlT  247 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIGQ--QAYNQALAFKEA-----TPIGSIIVT  247 (443)
T ss_dssp             HTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGGG--GHHHHHHHHHHS-----CTTEEEEEE
T ss_pred             hCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCch--hHHHHHHHHHhh-----CCCeEEEEE
Confidence            02467999999998642   34455556554332  2578999999985322  122222333222     126779999


Q ss_pred             CCCCCCC
Q 023214          146 GGDELED  152 (285)
Q Consensus       146 k~D~~~~  152 (285)
                      |+|....
T Consensus       248 KlD~~~~  254 (443)
T 3dm5_A          248 KLDGSAK  254 (443)
T ss_dssp             CCSSCSS
T ss_pred             CCCCccc
Confidence            9998765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.65  E-value=1.6e-08  Score=84.71  Aligned_cols=60  Identities=30%  Similarity=0.410  Sum_probs=39.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      .+++++|.+|+|||||+|+|+|......+.. .++|.....  ..  .+..+.|+||||+.++..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQW--FS--LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEE--EE--eCCCEEEEECCCcccCcC
Confidence            4999999999999999999999876444332 244444322  11  255789999999998765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.65  E-value=4.2e-08  Score=99.28  Aligned_cols=149  Identities=17%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCC-----
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTP-----   77 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtp-----   77 (285)
                      .++++|+|+.+++|  .+|+|||+||+|||||++.|++-..+..|.... |+...  ..........--.|...|     
T Consensus      1092 ~~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~--~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A         1092 IEILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK--TLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp             SCSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT--TBCHHHHHTTEEEECSSCCCCSE
T ss_pred             CccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh--hCCHHHHHhheEEECCCCEeeCc
Confidence            46899999999999  899999999999999999999987766543210 10000  000000000001122222     


Q ss_pred             --------CCCCCCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214           78 --------GLFDFSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-  143 (285)
Q Consensus        78 --------G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-  143 (285)
                              |......+++++.+-+..     ++.....+.|..  |-+.+..+|+++++++...+.++.++   +++|+ 
T Consensus      1168 TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~--vge~G~~LSgGQrQriaiARAllr~~---~ILiLD 1242 (1321)
T 4f4c_A         1168 SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETR--VGDRGTQLSGGQKQRIAIARALVRNP---KILLLD 1242 (1321)
T ss_dssp             EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSE--ETTTSCSSCHHHHHHHHHHHHHHSCC---SEEEEE
T ss_pred             cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCE--ecCCCcccCHHHHHHHHHHHHHHhCC---CEEEEe
Confidence                    222222233443332221     122222234432  22345679999999999999998876   77777 


Q ss_pred             --EeCCCCCCCChhcHHHHhhh
Q 023214          144 --FTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       144 --~nk~D~~~~~~~~l~~~l~~  163 (285)
                        ++.+|..+.  ..+.+.+..
T Consensus      1243 EaTSaLD~~tE--~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1243 EATSALDTESE--KVVQEALDR 1262 (1321)
T ss_dssp             SCCCSTTSHHH--HHHHHHHTT
T ss_pred             CccccCCHHHH--HHHHHHHHH
Confidence              777886554  566666653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.64  E-value=1.4e-08  Score=85.45  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=39.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .++++++|+.++.|  ..++|+|+||+|||||+++|+|...+..|.
T Consensus        32 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~   75 (271)
T 2ixe_A           32 VQVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTGGK   75 (271)
T ss_dssp             SCCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             ceeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            56899999999999  899999999999999999999988766543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.62  E-value=7.9e-08  Score=89.85  Aligned_cols=43  Identities=23%  Similarity=0.308  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++.+++|+.+++|  ..++++|+||+|||||++.|+|...+..|
T Consensus       368 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G  410 (598)
T 3qf4_B          368 KPVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVDRG  410 (598)
T ss_dssp             SCSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred             CccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence            56889999999999  89999999999999999999998876654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.62  E-value=5.7e-08  Score=90.45  Aligned_cols=43  Identities=33%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++.+++|+.+++|  ..++++|+||+|||||++.|+|...+..|
T Consensus       354 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G  396 (578)
T 4a82_A          354 APILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSG  396 (578)
T ss_dssp             CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             CcceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            46889999999999  89999999999999999999998876654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.61  E-value=3.9e-08  Score=99.55  Aligned_cols=149  Identities=18%  Similarity=0.170  Sum_probs=85.6

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCC-
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLF-   80 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~-   80 (285)
                      +.++++|+|+.+++|  ..++|||++|+|||||++.|+|...+..|.... |.....  ....+....--++...|.++ 
T Consensus       430 ~~~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~--~~~~~lr~~i~~v~Q~~~Lf~  505 (1321)
T 4f4c_A          430 DVPILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD--INLEFLRKNVAVVSQEPALFN  505 (1321)
T ss_dssp             TSCSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTT--SCHHHHHHHEEEECSSCCCCS
T ss_pred             CCceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchh--ccHHHHhhcccccCCcceeeC
Confidence            357889999999999  899999999999999999999998766543211 000000  00000000011222333332 


Q ss_pred             ----------CCCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214           81 ----------DFSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--  143 (285)
Q Consensus        81 ----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--  143 (285)
                                .+..+.+.+.+-...     ++.....+.|.  .|=+-+..+|++.++++...+..+.++   +++|+  
T Consensus       506 ~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T--~vGe~G~~LSGGQkQRiaiARAl~~~~---~IliLDE  580 (1321)
T 4f4c_A          506 CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT--LVGDRGTQLSGGQKQRIAIARALVRNP---KILLLDE  580 (1321)
T ss_dssp             EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSS--EESSSSCCCCHHHHHHHHHHHHHTTCC---SEEEEES
T ss_pred             CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCcc--EecCCCCCCCHHHHHHHHHHHHHccCC---CEEEEec
Confidence                      222223332222211     11111122333  122335689999999999999998766   78887  


Q ss_pred             -EeCCCCCCCChhcHHHHhh
Q 023214          144 -FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 -~nk~D~~~~~~~~l~~~l~  162 (285)
                       ++-.|....  ..+.+.+.
T Consensus       581 ~tSaLD~~te--~~i~~~l~  598 (1321)
T 4f4c_A          581 ATSALDAESE--GIVQQALD  598 (1321)
T ss_dssp             TTTTSCTTTH--HHHHHHHH
T ss_pred             ccccCCHHHH--HHHHHHHH
Confidence             777886543  45555553

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.60  E-value=1.5e-08  Score=85.07  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .++++++|+.+..|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        20 ~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~   63 (266)
T 2yz2_A           20 KKALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPTSGD   63 (266)
T ss_dssp             EEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             cceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            35789999999999  899999999999999999999988766543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.60  E-value=1.2e-08  Score=84.85  Aligned_cols=38  Identities=32%  Similarity=0.517  Sum_probs=35.2

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +.++++++|+++..|  ..++|+|+||+|||||+++|+|.
T Consensus        15 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           15 GETILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            356789999999999  89999999999999999999997

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.59  E-value=9.4e-08  Score=82.50  Aligned_cols=124  Identities=15%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC------CCc-----------ceeEEEEEEEe------------
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS------SGV-----------TSTCEMQRTVL------------   65 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~------~~~-----------t~~~~~~~~~~------------   65 (285)
                      .+|  ..|+++|+||+|||||++.|+|...+..+...      ...           ...+.+..+..            
T Consensus       127 ~~g--~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          127 EKP--YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             CSS--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             CCC--eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            445  89999999999999999999986544332110      000           00000111100            


Q ss_pred             ----eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEE
Q 023214           66 ----KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI  141 (285)
Q Consensus        66 ----~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i  141 (285)
                          ..+..+.++||+|.....   .....++.......  .+|-.++++|+....  .-...+..+...++     ..+
T Consensus       205 ~~~~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~~--~~~~~~~~~~~~~~-----it~  272 (328)
T 3e70_C          205 QHAKARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAGN--AIVEQARQFNEAVK-----IDG  272 (328)
T ss_dssp             HHHHHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGTT--HHHHHHHHHHHHSC-----CCE
T ss_pred             HHHHhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHHH--HHHHHHHHHHHhcC-----CCE
Confidence                013457889999986432   22334444333222  357788899974331  12222333332222     578


Q ss_pred             EEEeCCCCCCC
Q 023214          142 VVFTGGDELED  152 (285)
Q Consensus       142 il~nk~D~~~~  152 (285)
                      +++||+|....
T Consensus       273 iilTKlD~~a~  283 (328)
T 3e70_C          273 IILTKLDADAR  283 (328)
T ss_dssp             EEEECGGGCSC
T ss_pred             EEEeCcCCccc
Confidence            99999997654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.59  E-value=1.1e-07  Score=88.73  Aligned_cols=43  Identities=30%  Similarity=0.402  Sum_probs=39.1

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+++++|  ..++|+|+||+|||||++.|+|...+..|
T Consensus       356 ~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G  398 (582)
T 3b60_A          356 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEG  398 (582)
T ss_dssp             CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence            56889999999999  89999999999999999999998876654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.58  E-value=1.7e-08  Score=84.77  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=35.7

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.++++++|+.++.|  ..++|+|+||+|||||+++|+|..
T Consensus        32 ~~~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           32 DKAILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             CEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999  899999999999999999999973

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.56  E-value=2.3e-08  Score=83.01  Aligned_cols=40  Identities=23%  Similarity=0.162  Sum_probs=36.5

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      ++++++|+.+.+|  ..++|+|+||+|||||+++|+|...+.
T Consensus        14 ~vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~   53 (249)
T 2qi9_C           14 TRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSGK   53 (249)
T ss_dssp             TTEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred             EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            4678899999999  899999999999999999999988665

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.56  E-value=9e-08  Score=85.68  Aligned_cols=124  Identities=16%  Similarity=0.121  Sum_probs=68.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc------cccccCCC---------------C--------cceeE-EE--EEEE
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSS---------------G--------VTSTC-EM--QRTV   64 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~------~~~~~~~~---------------~--------~t~~~-~~--~~~~   64 (285)
                      +.+..|+++|++|+||||+++.|++...      ......+.               +        .+... ..  ....
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~  176 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME  176 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence            3346899999999999999999987421      10000000               0        00000 00  0000


Q ss_pred             eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc-CeEEEE
Q 023214           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVV  143 (285)
Q Consensus        65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~iil  143 (285)
                      ...+..+.||||||....   +.....++...  .....+|.+++|+|+....+     .+..+.. |... . ....++
T Consensus       177 ~~~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~~-----~~~~~~~-~~~~-~~~i~gvV  244 (432)
T 2v3c_C          177 KFKKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQQ-----AGIQAKA-FKEA-VGEIGSII  244 (432)
T ss_dssp             TTSSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGGG-----HHHHHHH-HHTT-SCSCEEEE
T ss_pred             HhhCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccHH-----HHHHHHH-Hhhc-ccCCeEEE
Confidence            013567999999998742   33344444332  22336899999999853321     2222322 2221 2 258899


Q ss_pred             EeCCCCCCC
Q 023214          144 FTGGDELED  152 (285)
Q Consensus       144 ~nk~D~~~~  152 (285)
                      +||+|....
T Consensus       245 lnK~D~~~~  253 (432)
T 2v3c_C          245 VTKLDGSAK  253 (432)
T ss_dssp             EECSSSCST
T ss_pred             EeCCCCccc
Confidence            999998654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.54  E-value=6.7e-08  Score=86.19  Aligned_cols=125  Identities=18%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh------CCcccccccCC---------------CCcceeEEEE----------EEEe--
Q 023214           19 ERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS---------------SGVTSTCEMQ----------RTVL--   65 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~------g~~~~~~~~~~---------------~~~t~~~~~~----------~~~~--   65 (285)
                      ...|+++|++|+||||++..|+      |..+.......               .++.......          ....  
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            3799999999999999999988      33321110000               0111000000          0000  


Q ss_pred             eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (285)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n  145 (285)
                      ..+..+.||||||..... .+.....++.......  .+|.+++|+|+...  .........+...++     +..+++|
T Consensus       177 ~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIlT  246 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVIIT  246 (433)
T ss_dssp             TTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEEE
T ss_pred             hcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEEe
Confidence            025679999999976411 2334456666554433  46889999998532  122233333333322     6889999


Q ss_pred             CCCCCCCC
Q 023214          146 GGDELEDN  153 (285)
Q Consensus       146 k~D~~~~~  153 (285)
                      |+|.....
T Consensus       247 KlD~~a~~  254 (433)
T 3kl4_A          247 KMDGTAKG  254 (433)
T ss_dssp             CGGGCSCH
T ss_pred             cccccccc
Confidence            99987553

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.52  E-value=2.2e-08  Score=85.41  Aligned_cols=64  Identities=27%  Similarity=0.335  Sum_probs=37.2

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      +.+..|  ..++|+|+||+|||||+|+|+|...+.++....      ++|.....  ... .  ...++||||+..+
T Consensus       168 ~~~~~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          168 IPHFQD--KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTPGFSSL  237 (307)
T ss_dssp             GGGGTT--SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSCSCSSC
T ss_pred             HhhcCC--CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCCCcccc
Confidence            445567  799999999999999999999988766654332      22322111  111 1  3589999998754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.52  E-value=6e-07  Score=76.45  Aligned_cols=130  Identities=14%  Similarity=0.071  Sum_probs=69.5

Q ss_pred             ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc------ccccccCCCCc-c----------eeEEEEEE---------
Q 023214           10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSSGV-T----------STCEMQRT---------   63 (285)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~------~~~~~~~~~~~-t----------~~~~~~~~---------   63 (285)
                      +++... +  ..|+++|++|+||||++..|++..      +...+...... .          ........         
T Consensus        92 i~~~~~-~--~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~  168 (297)
T 1j8m_F           92 VIPDKI-P--YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGI  168 (297)
T ss_dssp             CSCSSS-S--EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHH
T ss_pred             cccCCC-C--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHH
Confidence            555544 4  799999999999999999988432      21111111000 0          00000000         


Q ss_pred             -----E-ee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccc
Q 023214           64 -----V-LK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI  136 (285)
Q Consensus        64 -----~-~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~  136 (285)
                           . .. .+..+.||||||.... ........++......  ..+|.+++|+++...  .   ..+..++.. ... 
T Consensus       169 ~~~~l~~~~~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~---~~~~~~~~~-~~~-  238 (297)
T 1j8m_F          169 AKRGVEKFLSEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEA--IKPDEVTLVIDASIG--Q---KAYDLASKF-NQA-  238 (297)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--G---GHHHHHHHH-HHT-
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--H---HHHHHHHHH-Hhh-
Confidence                 0 00 3457999999998751 1222334444332221  256889999998522  1   223333322 211 


Q ss_pred             cCeEEEEEeCCCCCCC
Q 023214          137 FDYMIVVFTGGDELED  152 (285)
Q Consensus       137 ~~~~iil~nk~D~~~~  152 (285)
                      .....+++||+|....
T Consensus       239 ~~i~gvVlnk~D~~~~  254 (297)
T 1j8m_F          239 SKIGTIIITKMDGTAK  254 (297)
T ss_dssp             CTTEEEEEECGGGCTT
T ss_pred             CCCCEEEEeCCCCCcc
Confidence            1237789999997654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.52  E-value=2.6e-07  Score=82.69  Aligned_cols=108  Identities=18%  Similarity=0.147  Sum_probs=57.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC-----------------cccccccCCCCcceeEEEEE----EEeeC--CceEEE
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGR-----------------RAFKSRASSSGVTSTCEMQR----TVLKD--GQVVNV   73 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~l   73 (285)
                      .+...|+|+|+.++|||||+|.|+|.                 ..|..+.....+|.......    ...+.  ...+.+
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl  144 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence            34468999999999999999999974                 12322222222222221111    11111  245999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (285)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~  130 (285)
                      +||||+.++..+. .....+.   ..+.--.+.++|-+.  ..+...+...|.++.+
T Consensus       145 lDTeG~~~~~~~~-~~d~~if---al~~lLSs~~IyN~~--~~i~~~~l~~L~~~~e  195 (447)
T 3q5d_A          145 MDTQGTFDSQSTL-RDSATVF---ALSTMISSIQVYNLS--QNVQEDDLQHLQLFTE  195 (447)
T ss_dssp             EEEECCCSSHHHH-HHHHHHH---HHHHHHCSEEEEEES--SSCCHHHHHHHHHHHH
T ss_pred             EcCCcccccccch-hhhHHHH---HHHHHHhhHHHHhhc--ccccHHHHHHHHHHHH
Confidence            9999998753211 1111111   111111245454443  4788888777776555

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.51  E-value=4.6e-08  Score=81.78  Aligned_cols=40  Identities=28%  Similarity=0.296  Sum_probs=36.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      .++++++|+.+++|  ..++|+|+||+|||||+++|+|...+
T Consensus        33 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   72 (260)
T 2ghi_A           33 HRTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA   72 (260)
T ss_dssp             SCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            35889999999999  89999999999999999999998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.50  E-value=1.1e-07  Score=87.53  Aligned_cols=134  Identities=10%  Similarity=-0.074  Sum_probs=73.5

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   86 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~   86 (285)
                      +++.++.+.+|  ..++|+|+||+|||||+++|+|...+..|.....  ....+            +...|... +..+.
T Consensus       302 l~~~~~~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~--~~i~~------------v~Q~~~~~-~~~tv  364 (538)
T 1yqt_A          302 LEVEPGEIKKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD--LTVAY------------KPQYIKAD-YEGTV  364 (538)
T ss_dssp             EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC--CCEEE------------ECSSCCCC-CSSBH
T ss_pred             EEeCccccCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC--ceEEE------------EecCCcCC-CCCcH
Confidence            34445566788  8999999999999999999999987766554321  11111            11122211 11122


Q ss_pred             HHHHHHH-H------HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhc
Q 023214           87 EFVGKEI-V------KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDET  156 (285)
Q Consensus        87 ~~~~~~~-~------~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~  156 (285)
                      .+..... .      ..+...+.....--+.-..-..+|+++++++..++.+...+   +++|+   ++++|....  ..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p---~lLlLDEPt~~LD~~~~--~~  439 (538)
T 1yqt_A          365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA---DIYLLDEPSAYLDVEQR--LA  439 (538)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC---SEEEEECTTTTCCHHHH--HH
T ss_pred             HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC---CEEEEeCCcccCCHHHH--HH
Confidence            2211111 0      00111111111000000011369999999999988887655   67777   888886654  45


Q ss_pred             HHHHhh
Q 023214          157 LEDYLG  162 (285)
Q Consensus       157 l~~~l~  162 (285)
                      +.+.+.
T Consensus       440 i~~~l~  445 (538)
T 1yqt_A          440 VSRAIR  445 (538)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.47  E-value=4.6e-07  Score=79.24  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=45.7

Q ss_pred             EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHH
Q 023214           60 MQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTL  131 (285)
Q Consensus        60 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~~~  131 (285)
                      ...+.. .+..+.++||+|.....           .....++.++++++||+|+++.-        ...-...+.++...
T Consensus       193 ~~~~~~-~~~~l~i~Dt~Gq~~~r-----------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i  260 (362)
T 1zcb_A          193 EYDFEI-KNVPFKMVDVGGQRSER-----------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI  260 (362)
T ss_dssp             EEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred             EEEeee-CCeEEEEEeccchhhhh-----------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH
Confidence            334444 57789999999975432           22346788999999999997410        11112223333333


Q ss_pred             hCcc--ccCeEEEEEeCCCCC
Q 023214          132 FGKK--IFDYMIVVFTGGDEL  150 (285)
Q Consensus       132 ~~~~--~~~~~iil~nk~D~~  150 (285)
                      +...  ...|+|+++||.|+.
T Consensus       261 ~~~~~~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          261 VNNRVFSNVSIILFLNKTDLL  281 (362)
T ss_dssp             HTCGGGTTSEEEEEEECHHHH
T ss_pred             hcchhhCCCCEEEEEEChhhh
Confidence            3211  124999999999975

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.47  E-value=1.1e-07  Score=77.17  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .++|+++|++|+|||||++.|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            379999999999999999999865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.46  E-value=4.9e-08  Score=75.29  Aligned_cols=41  Identities=20%  Similarity=0.149  Sum_probs=35.6

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.+++|+.+.+|  ..++|+|+||+|||||++.|+|.. +..+.
T Consensus        22 ~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~   62 (158)
T 1htw_A           22 AEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGN   62 (158)
T ss_dssp             HHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred             HHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence            456788999999  899999999999999999999987 55554

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.43  E-value=1e-06  Score=76.04  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=49.9

Q ss_pred             EEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC----------CCCCHHHHHHHHHH
Q 023214           59 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR----------SRFSQEEEAALHSL  128 (285)
Q Consensus        59 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~----------~~~~~~~~~~l~~~  128 (285)
                      ....... .+..+.++||+|..           .++.....++.+++++++|+|.+          +.-+  -...+.++
T Consensus       152 ~~~~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr--~~es~~~~  217 (340)
T 4fid_A          152 HEYDFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSR--LTESIAVF  217 (340)
T ss_dssp             EEEEEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBH--HHHHHHHH
T ss_pred             EEEEEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccch--HHHHHHHH
Confidence            3344444 57889999999953           34445567899999999999986          1111  11223333


Q ss_pred             HHHhCcc--ccCeEEEEEeCCCCCC
Q 023214          129 QTLFGKK--IFDYMIVVFTGGDELE  151 (285)
Q Consensus       129 ~~~~~~~--~~~~~iil~nk~D~~~  151 (285)
                      ...+..+  ...|+++++||.|+..
T Consensus       218 ~~i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          218 KDIMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             HHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred             HHHhhhhccCCCeEEEEEECchhhh
Confidence            3332211  1238999999999753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.41  E-value=3.2e-07  Score=78.40  Aligned_cols=132  Identities=14%  Similarity=0.173  Sum_probs=70.3

Q ss_pred             ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCc-----------ceeEEEEEEE--------
Q 023214           10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-----------TSTCEMQRTV--------   64 (285)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~------~~~~~-----------t~~~~~~~~~--------   64 (285)
                      +++....+  ..|+++|++|+||||++..|++...+..+.      .....           ..........        
T Consensus        97 ~~~~~~~~--~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v  174 (306)
T 1vma_A           97 LNVPPEPP--FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAV  174 (306)
T ss_dssp             CCCCSSSC--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHH
T ss_pred             CcccCCCC--eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHH
Confidence            34444445  799999999999999999988654322111      00000           0000000000        


Q ss_pred             --------eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh---ccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 023214           65 --------LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM---AKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLF  132 (285)
Q Consensus        65 --------~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~  132 (285)
                              ...+..+.|+||||..   .....+..++......   ..+ .+|.+++|+++.   +.  ...+..++...
T Consensus       175 ~~~al~~a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~~  246 (306)
T 1vma_A          175 AFDAVAHALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIFK  246 (306)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHHH
Confidence                    1134569999999963   2334444444443322   122 478889999975   22  22233333221


Q ss_pred             CccccCeEEEEEeCCCCCCCC
Q 023214          133 GKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus       133 ~~~~~~~~iil~nk~D~~~~~  153 (285)
                      . . ....-+++||.|.....
T Consensus       247 ~-~-~~i~gvVlTk~D~~~~g  265 (306)
T 1vma_A          247 E-A-VNVTGIILTKLDGTAKG  265 (306)
T ss_dssp             H-H-SCCCEEEEECGGGCSCT
T ss_pred             h-c-CCCCEEEEeCCCCccch
Confidence            1 1 11466778999976553

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.39  E-value=9.6e-08  Score=77.72  Aligned_cols=38  Identities=16%  Similarity=0.079  Sum_probs=24.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ++-++++|+.++.|  ..++|+|+||+|||||++.|+|..
T Consensus        10 ~~~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           10 HSSGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ------------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            34578899999999  899999999999999999999855

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.39  E-value=1.6e-07  Score=87.57  Aligned_cols=42  Identities=14%  Similarity=0.060  Sum_probs=34.6

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   50 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~   50 (285)
                      +++.++.+..|  ..++|+|+||+|||||+++|+|...+.+|..
T Consensus       372 l~~~~~~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I  413 (607)
T 3bk7_A          372 LEVEPGEIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV  413 (607)
T ss_dssp             EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred             EEecccccCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            34445567788  8999999999999999999999987766554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.38  E-value=1.4e-07  Score=78.18  Aligned_cols=40  Identities=20%  Similarity=0.161  Sum_probs=24.9

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      |+..+++++||.+..|  ..|+|+|+||||||||++.|+|..
T Consensus        10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -------------CCS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999  899999999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.38  E-value=1.5e-07  Score=82.96  Aligned_cols=41  Identities=34%  Similarity=0.484  Sum_probs=37.3

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      |+..+.+++|+.+..|  ..++|+|+||+|||||+++|+|...
T Consensus        32 ~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           32 GGNAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             SSCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCeEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC
Confidence            3457889999999999  8999999999999999999999875

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.36  E-value=3.4e-06  Score=72.48  Aligned_cols=84  Identities=11%  Similarity=0.077  Sum_probs=51.2

Q ss_pred             ceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC-------CCCCHH-HHHHHH
Q 023214           55 TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFSQE-EEAALH  126 (285)
Q Consensus        55 t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~-~~~~l~  126 (285)
                      |+......... .+..+.++||.|..           ..+.....++.+++++++|++.+       +.-+.. -...+.
T Consensus       154 TiGi~~~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~  221 (327)
T 3ohm_A          154 TTGIIEYPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA  221 (327)
T ss_dssp             CCSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH
T ss_pred             eeeEEEEEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH
Confidence            33333444455 67889999999964           23334457899999999999764       111111 123334


Q ss_pred             HHHHHhCcc--ccCeEEEEEeCCCCC
Q 023214          127 SLQTLFGKK--IFDYMIVVFTGGDEL  150 (285)
Q Consensus       127 ~~~~~~~~~--~~~~~iil~nk~D~~  150 (285)
                      ++...+..+  ...|+++++||.|+.
T Consensus       222 ~~~~i~~~~~~~~~~iiL~~NK~DL~  247 (327)
T 3ohm_A          222 LFRTIITYPWFQNSSVILFLNKKDLL  247 (327)
T ss_dssp             HHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred             HHHHHhhhhccCCceEEEEEECchhh
Confidence            444444322  124899999999975

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.35  E-value=7.9e-07  Score=89.86  Aligned_cols=43  Identities=30%  Similarity=0.253  Sum_probs=38.8

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+++|  ..++|+|+||+|||||++.|+|...+..|
T Consensus       403 ~~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~~~G  445 (1284)
T 3g5u_A          403 VQILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDPLDG  445 (1284)
T ss_dssp             CCSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred             CcceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            36899999999999  89999999999999999999998876554

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.33  E-value=2.1e-06  Score=74.79  Aligned_cols=81  Identities=10%  Similarity=0.091  Sum_probs=50.2

Q ss_pred             EEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC--------CHHHHHHHHHHH
Q 023214           58 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQ  129 (285)
Q Consensus        58 ~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~  129 (285)
                      .....+.+ .+..+.++||+|.....           .....++.++|++++|+|.++.-        ...-.....++.
T Consensus       183 i~~~~~~~-~~~~l~iwDt~GQe~~r-----------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~  250 (353)
T 1cip_A          183 IVETHFTF-KDLHFKMFDVGGQRSER-----------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD  250 (353)
T ss_dssp             EEEEEEEE-TTEEEEEEEECCSGGGG-----------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHH
T ss_pred             eEEEEEee-CCeeEEEEeCCCchhhh-----------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHH
Confidence            33344445 57789999999976432           12345789999999999997421        111223333444


Q ss_pred             HHhCcc--ccCeEEEEEeCCCCC
Q 023214          130 TLFGKK--IFDYMIVVFTGGDEL  150 (285)
Q Consensus       130 ~~~~~~--~~~~~iil~nk~D~~  150 (285)
                      ..+..+  ...|+++++||.|+.
T Consensus       251 ~i~~~~~~~~~piiLv~NK~DL~  273 (353)
T 1cip_A          251 SICNNKWFTDTSIILFLNKKDLF  273 (353)
T ss_dssp             HHHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHHcCccccCCcEEEEEECcCch
Confidence            433311  124999999999974

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.33  E-value=2.5e-07  Score=93.46  Aligned_cols=147  Identities=17%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC--
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD--   81 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~--   81 (285)
                      ++++++|+.+++|  .+++|+|+||+|||||++.|+|...+..|.... +..... .....+ ...--.+...|-+++  
T Consensus      1047 ~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~-~~~~~~-r~~i~~v~Q~~~l~~~t 1122 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ-LNVQWL-RAQLGIVSQEPILFDCS 1122 (1284)
T ss_dssp             CSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS-SCHHHH-TTSCEEEESSCCCCSSB
T ss_pred             eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc-CCHHHH-HhceEEECCCCcccccc
Confidence            5889999999999  899999999999999999999988766553211 111000 000000 000011222222111  


Q ss_pred             -----------CCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214           82 -----------FSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--  143 (285)
Q Consensus        82 -----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--  143 (285)
                                 ...+...+......     ++.....+.|..  |-+.+..+|+++++++...+.++.++   +++++  
T Consensus      1123 i~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~--vge~G~~LSgGq~Qrv~iARal~~~p---~iLiLDE 1197 (1284)
T 3g5u_A         1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR--VGDKGTQLSGGQKQRIAIARALVRQP---HILLLDE 1197 (1284)
T ss_dssp             HHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCB--CSTTSCSSCHHHHHHHHHHHHHHHCC---SSEEEES
T ss_pred             HHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccc--cCCCCCccCHHHHHHHHHHHHHHcCC---CEEEEeC
Confidence                       11122222222211     111111122221  11234579999999999999887765   77777  


Q ss_pred             -EeCCCCCCCChhcHHHHhh
Q 023214          144 -FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 -~nk~D~~~~~~~~l~~~l~  162 (285)
                       ++.+|....  ..+.+.+.
T Consensus      1198 pTs~lD~~~~--~~i~~~l~ 1215 (1284)
T 3g5u_A         1198 ATSALDTESE--KVVQEALD 1215 (1284)
T ss_dssp             CSSSCCHHHH--HHHHHHHH
T ss_pred             CcccCCHHHH--HHHHHHHH
Confidence             888886554  55555554

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.33  E-value=7.1e-07  Score=76.21  Aligned_cols=61  Identities=25%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C--cceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      ..|  ..++|+|+||+|||||+|+|+ ...+.+|....    |  +|....  ....  .....++||||+..+
T Consensus       163 l~G--~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~--~~~g~v~d~pg~~~~  229 (302)
T 2yv5_A          163 LEG--FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPF--GKGSFVGDTPGFSKV  229 (302)
T ss_dssp             TTT--CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEE--TTTEEEESSCCCSSC
T ss_pred             ccC--cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEc--CCCcEEEECcCcCcC
Confidence            345  789999999999999999999 77666654332    2  222211  1111  123578999998743

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.32  E-value=1.9e-07  Score=85.96  Aligned_cols=38  Identities=13%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214           10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .++.+..|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus       287 ~~~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~  324 (538)
T 3ozx_A          287 DNGEAKEG--EIIGILGPNGIGKTTFARILVGEITADEGS  324 (538)
T ss_dssp             CCEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred             ccceECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            35567888  899999999999999999999998776654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.32  E-value=1.3e-06  Score=75.06  Aligned_cols=133  Identities=18%  Similarity=0.192  Sum_probs=73.7

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc--------------ceeEEEE-EEE--
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV--------------TSTCEMQ-RTV--   64 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~------~~~~~~--------------t~~~~~~-~~~--   64 (285)
                      .++++....+  ..|+++|++|+||||++..|++......+      ......              .....+. ...  
T Consensus        96 ~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~  173 (320)
T 1zu4_A           96 YRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN  173 (320)
T ss_dssp             CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred             cCccccCCCC--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence            4567776666  89999999999999999998765432111      001000              0001111 000  


Q ss_pred             --------------eeCCceEEEEeCCCCCCCCCCcHHHHHHHHH---HHhhccC-CccEEEEEEeCCCCCCHHHHHHHH
Q 023214           65 --------------LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGMAKD-GIHAVLVVFSVRSRFSQEEEAALH  126 (285)
Q Consensus        65 --------------~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~  126 (285)
                                    ...+..+.||||||....   ......++..   .+....+ .+|.+++|+++...     ...+.
T Consensus       174 ~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~  245 (320)
T 1zu4_A          174 ADPASVVFDAIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVI  245 (320)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHH
Confidence                          013456999999997631   2223333332   2222223 37888999998622     23344


Q ss_pred             HHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          127 SLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       127 ~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++. |... ....-+++||.|....
T Consensus       246 ~~~~-~~~~-~~i~GvVltk~d~~~~  269 (320)
T 1zu4_A          246 QAEE-FSKV-ADVSGIILTKMDSTSK  269 (320)
T ss_dssp             HHHH-HTTT-SCCCEEEEECGGGCSC
T ss_pred             HHHH-Hhhc-CCCcEEEEeCCCCCCc
Confidence            4444 3322 2245588999997644

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.30  E-value=2.7e-07  Score=80.29  Aligned_cols=30  Identities=30%  Similarity=0.527  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-ccccc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRA   49 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~   49 (285)
                      ..++|+|+||+|||||+|+|+|... +.++.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~  246 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTND  246 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCC
Confidence            6899999999999999999999887 65554

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.27  E-value=7.4e-06  Score=73.29  Aligned_cols=124  Identities=17%  Similarity=0.142  Sum_probs=67.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh-------CCcccccccCCCCcc-----------eeEEEEE--------------E-
Q 023214           17 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGVT-----------STCEMQR--------------T-   63 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~-------g~~~~~~~~~~~~~t-----------~~~~~~~--------------~-   63 (285)
                      +++..|+++|++|+||||+...|+       |..+......+....           .......              . 
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            334789999999999999998888       555432111110000           0000000              0 


Q ss_pred             Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEE
Q 023214           64 VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        64 ~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      ... .+..++||||||....   .......+.....  ...++.+++|+++....+.     +..+.. |.... ...-+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~~~-----~~~~~~-f~~~l-~i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQDA-----ANTAKA-FNEAL-PLTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCTTH-----HHHHHH-HHHHS-CCCCE
T ss_pred             HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhHHH-----HHHHHH-HhccC-CCeEE
Confidence            001 3567999999997643   2334444443322  2357889999998633221     222222 22211 12457


Q ss_pred             EEeCCCCCCC
Q 023214          143 VFTGGDELED  152 (285)
Q Consensus       143 l~nk~D~~~~  152 (285)
                      ++||+|....
T Consensus       246 VlnK~D~~~~  255 (433)
T 2xxa_A          246 VLTKVDGDAR  255 (433)
T ss_dssp             EEECTTSSSC
T ss_pred             EEecCCCCcc
Confidence            8999997654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.25  E-value=2.6e-06  Score=75.83  Aligned_cols=129  Identities=21%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc-c----------eeEEEEEE-------
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-T----------STCEMQRT-------   63 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~------~~~~~~-t----------~~~~~~~~-------   63 (285)
                      .++++.  .+  ..|+++|++|+||||++..|++......+      ...... .          ..+..+..       
T Consensus        91 ~~i~l~--~~--~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~  166 (425)
T 2ffh_A           91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE  166 (425)
T ss_dssp             CCCCCC--SS--EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH
T ss_pred             ccccCC--CC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHH
Confidence            345554  34  78999999999999999998854432111      000000 0          00000110       


Q ss_pred             -------Ee--eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Q 023214           64 -------VL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK  134 (285)
Q Consensus        64 -------~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~  134 (285)
                             ..  ..+..+.||||||....   +.....++.......  .+|.+++|+|+...     ...+..+.. |..
T Consensus       167 ~i~~~~l~~~~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg-----q~av~~a~~-f~~  235 (425)
T 2ffh_A          167 SIRRRVEEKARLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG-----QEALSVARA-FDE  235 (425)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch-----HHHHHHHHH-HHh
Confidence                   00  13456999999997643   333445554443322  56888999998522     122233322 221


Q ss_pred             cccCeEEEEEeCCCCCCC
Q 023214          135 KIFDYMIVVFTGGDELED  152 (285)
Q Consensus       135 ~~~~~~iil~nk~D~~~~  152 (285)
                      . ....-+++||.|....
T Consensus       236 ~-l~i~GVIlTKlD~~~~  252 (425)
T 2ffh_A          236 K-VGVTGLVLTKLDGDAR  252 (425)
T ss_dssp             H-TCCCEEEEESGGGCSS
T ss_pred             c-CCceEEEEeCcCCccc
Confidence            1 1246778999997644

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.25  E-value=4e-07  Score=71.07  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=27.8

Q ss_pred             CccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214            9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ++|+.++.|  ..++++|+||||||||++++++
T Consensus         1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             CEEEEEESS--EEEEEECCTTSCHHHHHHHHSC
T ss_pred             CccccCCCC--EEEEEECCCCCCHHHHHHHHcc
Confidence            468889999  8999999999999999998664

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.25  E-value=2.1e-07  Score=79.31  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +++++++.+++|  ..++|+|+||+|||||+++|+|..
T Consensus       115 vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence            567889999999  899999999999999999999754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.25  E-value=4.5e-07  Score=77.43  Aligned_cols=59  Identities=27%  Similarity=0.344  Sum_probs=37.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C--cceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      ..++++|+||+|||||+|+|+|...+.+|....    +  +|....  ....  .....++|+||+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~--~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKF--DFGGYVVDTPGFANL  234 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEEC--TTSCEEESSCSSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEc--CCCCEEEECcCCCcc
Confidence            689999999999999999999988776654332    1  221111  1111  223578999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.20  E-value=9.9e-07  Score=81.25  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ...+++ .+.+|  ..++|+|+||+|||||+++|+|...+..|.
T Consensus        37 ~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           37 VLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             cccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            567777 88899  899999999999999999999988776654

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.19  E-value=2.2e-05  Score=69.95  Aligned_cols=109  Identities=18%  Similarity=0.174  Sum_probs=62.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh-------C----------CcccccccCCCCcceeEEEEE----EEeeCC--ceEE
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSIL-------G----------RRAFKSRASSSGVTSTCEMQR----TVLKDG--QVVN   72 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~-------g----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~   72 (285)
                      ..+...|+|+|+.++|||+|+|.|+       |          ...|..+....++|.......    ...+.+  ..+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            3455788899999999999999775       2          133444333334444433321    222223  3599


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214           73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (285)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~  130 (285)
                      |+||.|+++...+...-..-+.-.+..+    +.+||-..  ..++..+...|.++.+
T Consensus       144 llDTEG~~d~~~~~~~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te  195 (457)
T 4ido_A          144 LMDTQGTFDSQSTLRDSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE  195 (457)
T ss_dssp             EEEECCBTCTTCCHHHHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred             EEeccCCCCcccCccccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence            9999999987554322111111111112    45555544  4677777777766654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.18  E-value=1.4e-06  Score=74.14  Aligned_cols=129  Identities=17%  Similarity=0.164  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccc-------CCC---------------CcceeEEEE-------EEEeeCCce
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA-------SSS---------------GVTSTCEMQ-------RTVLKDGQV   70 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~-------~~~---------------~~t~~~~~~-------~~~~~~~~~   70 (285)
                      ..|+++|+||+||||++..|++...+..|.       ...               +........       -... .+..
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~d  184 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYD  184 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCC
Confidence            699999999999999999988654321220       000               000000000       0001 3567


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      +.|+||||....   ......++...+.  ...++..++|++++..  ..   .+..+...|.  .....-+++||.|..
T Consensus       185 lvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~---~~~~~~~~~~--~l~~~giVltk~D~~  252 (296)
T 2px0_A          185 HVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YE---DMKHIVKRFS--SVPVNQYIFTKIDET  252 (296)
T ss_dssp             EEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HH---HHHHHTTTTS--SSCCCEEEEECTTTC
T ss_pred             EEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HH---HHHHHHHHHh--cCCCCEEEEeCCCcc
Confidence            999999998742   2223333433321  1236778889887532  11   2222333333  122455677999977


Q ss_pred             CCChhcHHHHhh
Q 023214          151 EDNDETLEDYLG  162 (285)
Q Consensus       151 ~~~~~~l~~~l~  162 (285)
                      ... ..+.+.+.
T Consensus       253 ~~~-g~~~~~~~  263 (296)
T 2px0_A          253 TSL-GSVFNILA  263 (296)
T ss_dssp             SCC-HHHHHHHH
T ss_pred             cch-hHHHHHHH
Confidence            543 33444444

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.17  E-value=7.3e-07  Score=71.77  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=24.4

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ++..+  .++..|  ..++|+|+||||||||+++|+|..
T Consensus        10 ~~~~~--~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           10 PTARG--QPAAVG--RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -----------CC--CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCC--CCCCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            34444  678888  899999999999999999999865

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.17  E-value=1.9e-05  Score=76.89  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=30.9

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHH
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSI   39 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l   39 (285)
                      +..+.+++++.+..|  ..++|+||||+|||||++++
T Consensus       648 ~~~v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          648 IAFIPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CCCCCEEEEEETTTB--CEEEEECCTTSSHHHHHHHH
T ss_pred             ceeecccceeecCCC--eEEEEECCCCCCHHHHHHHH
Confidence            345677889999888  79999999999999999999

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.15  E-value=4.7e-07  Score=88.01  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=39.3

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .++++++|+.+..|  .+++|+|+||+|||||+++|+|...+.+|.
T Consensus       686 ~~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P~sG~  729 (986)
T 2iw3_A          686 KPQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLPTSGE  729 (986)
T ss_dssp             SCSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCCSEEE
T ss_pred             ceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            46789999999999  899999999999999999999998766543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.15  E-value=1.5e-06  Score=81.06  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=36.0

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +..+++ .+..|  ..++|+|+||+|||||+++|+|...+..|.
T Consensus       107 ~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          107 VLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             eeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            567777 78889  899999999999999999999998776655

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.14  E-value=2.5e-06  Score=72.54  Aligned_cols=129  Identities=20%  Similarity=0.178  Sum_probs=70.3

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCc-ce----------eEEEEEE-------
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-TS----------TCEMQRT-------   63 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~------~~~~~-t~----------~~~~~~~-------   63 (285)
                      .++++.  .+  ..|+++|++|+||||++..|++......+.      ..... ..          .......       
T Consensus        91 ~~i~~~--~~--~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~  166 (295)
T 1ls1_A           91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE  166 (295)
T ss_dssp             CCCCCC--SS--EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH
T ss_pred             ceeecC--CC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHH
Confidence            345555  44  799999999999999999988654321111      00000 00          0000000       


Q ss_pred             -------Ee--eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Q 023214           64 -------VL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK  134 (285)
Q Consensus        64 -------~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~  134 (285)
                             ..  ..+..+.|+||||....   +.....++.......  .++.+++|+++...  .   ..+..++.. ..
T Consensus       167 ~l~~~~l~~~~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~---~~~~~~~~~-~~  235 (295)
T 1ls1_A          167 SIRRRVEEKARLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--Q---EALSVARAF-DE  235 (295)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--H---HHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--H---HHHHHHHHH-hh
Confidence                   00  02456999999987643   333445554444332  46778889997522  2   222333322 21


Q ss_pred             cccCeEEEEEeCCCCCCC
Q 023214          135 KIFDYMIVVFTGGDELED  152 (285)
Q Consensus       135 ~~~~~~iil~nk~D~~~~  152 (285)
                      . ....-+++||.|....
T Consensus       236 ~-~~i~givlnk~d~~~~  252 (295)
T 1ls1_A          236 K-VGVTGLVLTKLDGDAR  252 (295)
T ss_dssp             H-TCCCEEEEECGGGCSS
T ss_pred             c-CCCCEEEEECCCCCcc
Confidence            1 1245688999997654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.10  E-value=1e-05  Score=78.58  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +..+.+++++.+..|  ..++|+||||+|||||+++|.+
T Consensus       659 ~~~V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          659 DQYVPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SSSCCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHH
T ss_pred             CceecccccccCCCC--eEEEEECCCCCchHHHHHHHHH
Confidence            456788999999988  7999999999999999999864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.06  E-value=1.1e-06  Score=72.02  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh-CCc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL-GRR   43 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~-g~~   43 (285)
                      ....++||.+..|  ..|+|+|+||||||||++.|+ |..
T Consensus        15 ~~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           15 QTQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred             cccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3456788999999  899999999999999999999 865

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.05  E-value=2.8e-05  Score=67.63  Aligned_cols=70  Identities=11%  Similarity=0.090  Sum_probs=43.2

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC----------CCCCHHHHHHHHHHHHHhCcc--
Q 023214           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR----------SRFSQEEEAALHSLQTLFGKK--  135 (285)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~----------~~~~~~~~~~l~~~~~~~~~~--  135 (285)
                      ...+.++||+|...+..           ....++++++++++|+|++          +.-+-  .....++.......  
T Consensus       182 ~v~l~iwDtaGQe~~r~-----------~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~--~~~~~~~~~i~~~~~~  248 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERR-----------KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM--METKELFDWVLKQPCF  248 (354)
T ss_dssp             --EEEEEEECCSTTGGG-----------GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH--HHHHHHHHHHHTCGGG
T ss_pred             ceeeEEEECCCchhhhH-----------HHHHHhCCCCEEEEEEECcccccccccccchhHH--HHHHHHHHHHHhcccc
Confidence            35689999999865422           2235689999999999985          22111  22233333333211  


Q ss_pred             ccCeEEEEEeCCCCC
Q 023214          136 IFDYMIVVFTGGDEL  150 (285)
Q Consensus       136 ~~~~~iil~nk~D~~  150 (285)
                      ...|++++.||.|+.
T Consensus       249 ~~~piiLvgNK~DL~  263 (354)
T 2xtz_A          249 EKTSFMLFLNKFDIF  263 (354)
T ss_dssp             SSCEEEEEEECHHHH
T ss_pred             CCCeEEEEEECcchh
Confidence            124899999999964

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.04  E-value=1.7e-06  Score=72.18  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=31.3

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      ++++.+++  +.+|  ..++|+|+||||||||+++|+|...+
T Consensus        14 ~~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           14 PDKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             CTHHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCC
Confidence            34566666  6777  79999999999999999999987654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.03  E-value=2.2e-06  Score=68.51  Aligned_cols=30  Identities=10%  Similarity=0.184  Sum_probs=24.2

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +....|  ..|+|+|+||||||||++.|+|..
T Consensus         2 ~~m~~g--~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            2 NAMNKA--NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             ---CCC--CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcCCCC--cEEEEECcCCCCHHHHHHHHHhhC
Confidence            344566  789999999999999999999864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.01  E-value=2.9e-05  Score=68.58  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=48.5

Q ss_pred             EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC----------CCCHHHHHHHHHHHH
Q 023214           61 QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS----------RFSQEEEAALHSLQT  130 (285)
Q Consensus        61 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~----------~~~~~~~~~l~~~~~  130 (285)
                      ..+.+ .+..+.++||+|...+.           .....++.+++++++|+|+++          .-+-  .....++..
T Consensus       210 ~~~~~-~~v~l~iwDtaGQe~~r-----------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~--~e~~~~~~~  275 (402)
T 1azs_C          210 TKFQV-DKVNFHMFDVGGQRDER-----------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL--QEALNLFKS  275 (402)
T ss_dssp             EEEEE-TTEEEEEEEECCSGGGG-----------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH--HHHHHHHHH
T ss_pred             EEeec-CCccceecccchhhhhh-----------hhhHhhccCCCEEEEEEECcccccccccccccchH--HHHHHHHHH
Confidence            34444 56789999999976432           123467899999999999974          2222  223333333


Q ss_pred             HhCc--cccCeEEEEEeCCCCC
Q 023214          131 LFGK--KIFDYMIVVFTGGDEL  150 (285)
Q Consensus       131 ~~~~--~~~~~~iil~nk~D~~  150 (285)
                      ....  ....|++|+.||.|+.
T Consensus       276 i~~~~~~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          276 IWNNRWLRTISVILFLNKQDLL  297 (402)
T ss_dssp             HHTCTTCSSCCEEEEEECHHHH
T ss_pred             HHhcccCCCCeEEEEEEChhhh
Confidence            3321  1224899999999964

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.01  E-value=1.3e-06  Score=84.97  Aligned_cols=39  Identities=23%  Similarity=0.275  Sum_probs=35.1

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      |+..+++++|+.+..|  .+++|+|+||+|||||+++|+|.
T Consensus       446 g~~~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          446 GAKILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHHT
T ss_pred             CCEEeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            3456889999999999  89999999999999999999953

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.00  E-value=1.3e-06  Score=76.51  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=33.5

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~   47 (285)
                      +++++.+..|  ..++|+|+||+|||||+++|+|...+..
T Consensus       166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~  203 (361)
T 2gza_A          166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQ  203 (361)
T ss_dssp             HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred             HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence            6778888899  8999999999999999999999876543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.99  E-value=8.3e-06  Score=72.60  Aligned_cols=34  Identities=24%  Similarity=0.183  Sum_probs=29.2

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .++++++.+.+|   .++|+|+||+|||||+++|.+.
T Consensus        50 ~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l   83 (415)
T 4aby_A           50 TITQLELELGGG---FCAFTGETGAGKSIIVDALGLL   83 (415)
T ss_dssp             TEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHHH
Confidence            467888888887   8899999999999999998543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.98  E-value=3e-06  Score=68.85  Aligned_cols=30  Identities=17%  Similarity=0.272  Sum_probs=24.8

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..+.|  ..++|+||||||||||++.|+|...
T Consensus        12 ~~~~G--~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           12 HMAQG--TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ---CC--CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cCCCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence            44667  7999999999999999999998765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.97  E-value=5.5e-06  Score=76.21  Aligned_cols=42  Identities=19%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             ccCccccCC-CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214            7 DDDWELTSP-SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   50 (285)
Q Consensus         7 ~~~~~~~~~-~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~   50 (285)
                      |.-+.++.+ .|  ..++|+|+||||||||+++|+|...+..|..
T Consensus        14 f~l~~l~~~~~G--ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           14 FKLFGLPTPKNN--TILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             CEEECCCCCCTT--EEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             eeecCCCCCCCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            455556655 56  7999999999999999999999987766543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.97  E-value=7.7e-07  Score=76.94  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=33.7

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~   47 (285)
                      +.+++++.+..|  ..++|+|+||+|||||+++|+|...+..
T Consensus       160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~  199 (330)
T 2pt7_A          160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEE  199 (330)
T ss_dssp             HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred             HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence            345677888888  7999999999999999999999876543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.96  E-value=1.7e-06  Score=69.72  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   50 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~   50 (285)
                      ..|  ..++|+|+||+|||||+++|+|. .+.+|..
T Consensus        20 ~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           20 DTN--TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             HHC--SEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             cCC--CEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            556  79999999999999999999998 6666544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.96  E-value=7.4e-06  Score=66.44  Aligned_cols=25  Identities=16%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..+|+|+|++|+|||||++.++...
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3799999999999999999998653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.95  E-value=3.2e-06  Score=66.35  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      +++|+|+||+|||||++.|+|...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            789999999999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.93  E-value=1.9e-06  Score=77.65  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++.+..|  .+++|+|+||+|||||+++|+|...+..|
T Consensus       129 ~~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          129 EKIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             HHHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             hcCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            3578889999  89999999999999999999998765554

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.91  E-value=7.4e-06  Score=64.66  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +..|  ..|+|+|+|||||||+++.|++.
T Consensus         6 i~~g--~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            6 DLGG--NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CCTT--EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCC--eEEEEECCCCCCHHHHHHHHHhc
Confidence            5667  79999999999999999999986

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.89  E-value=3.9e-06  Score=75.74  Aligned_cols=42  Identities=17%  Similarity=-0.005  Sum_probs=34.9

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ..++++++.++.   ..++|+|+||+|||||+++|+|...+..|.
T Consensus        18 ~~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   59 (483)
T 3euj_A           18 NGFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDLTL   59 (483)
T ss_dssp             TTEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred             ccccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence            356788888887   489999999999999999999987665553

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.89  E-value=2e-06  Score=74.75  Aligned_cols=40  Identities=20%  Similarity=0.147  Sum_probs=34.3

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      ..+.+++ +++..|  .+++|+|+||+|||||+++|+|...+.
T Consensus        59 ~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           59 VRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             CHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            3456677 899999  899999999999999999999987543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.89  E-value=4e-06  Score=66.94  Aligned_cols=24  Identities=38%  Similarity=0.566  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|+||||+|||||++.|+|..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999854

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.88  E-value=9.3e-06  Score=75.66  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   50 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~   50 (285)
                      .+..|  ..++|+|+||+|||||+++|+|...+..|..
T Consensus        99 ~~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           99 TPRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            45667  7999999999999999999999988776654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.87  E-value=6.5e-06  Score=76.70  Aligned_cols=44  Identities=18%  Similarity=0.268  Sum_probs=35.9

Q ss_pred             cccCccccCCCCCc---eEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            6 IDDDWELTSPSNGE---RTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         6 ~~~~~~~~~~~~~~---~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .+.++++.+..|..   ..++|+|+||+|||||+++|+|...+..|.
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            45677888777632   469999999999999999999998877654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.85  E-value=6.8e-06  Score=66.05  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=23.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ...|  ..|+|+|+||||||||++.|+|..
T Consensus         3 ~~~~--~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            3 APKP--FVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             --CC--EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCc--EEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455  799999999999999999999864

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.85  E-value=5.7e-05  Score=72.54  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=32.4

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +..+++++++. ..|  ..++|+||||+|||||+++|+|..
T Consensus       594 ~~~vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          594 EPFIANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SCCCCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             Cceeeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHHH
Confidence            45677888888 667  799999999999999999998754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.84  E-value=3.5e-06  Score=75.51  Aligned_cols=40  Identities=18%  Similarity=0.082  Sum_probs=34.7

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      ..+.+++ +++..|  .+++|+|+||+|||||+++|+|...+.
T Consensus       145 ~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~~  184 (438)
T 2dpy_A          145 VRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRAD  184 (438)
T ss_dssp             CHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             ceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            4467778 999999  899999999999999999999876543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.83  E-value=6.8e-05  Score=65.30  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=26.2

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      ...++  ..|+|+|+||||||||+++|+|...+.
T Consensus       119 ~~~~~--g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          119 SDVPR--GLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             HHCSS--EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             HhCCC--CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            34455  599999999999999999999876543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=1e-05  Score=64.54  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=23.4

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ....+++++.+..+  ..|+|+|++||||||+.+.|++..
T Consensus        12 ~~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CC--CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            44578899999888  899999999999999999998543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.80  E-value=1.1e-05  Score=64.49  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=24.8

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      |.+.+|  ..|+|+|++||||||+++.|++..
T Consensus         1 m~i~~g--~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKG--LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCC--CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCC--CEEEEECCCCCCHHHHHHHHHHhh
Confidence            345667  799999999999999999999876

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.79  E-value=6.2e-05  Score=71.89  Aligned_cols=36  Identities=19%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..+++++++.   |  ..++|+||||+|||||+++|+|...
T Consensus       566 ~~vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~~  601 (765)
T 1ewq_A          566 EFVPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIAL  601 (765)
T ss_dssp             CCCCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhhh
Confidence            4566777777   6  7999999999999999999988653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.78  E-value=1e-05  Score=65.01  Aligned_cols=28  Identities=32%  Similarity=0.535  Sum_probs=24.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..|  ..|+|+|+||||||||++.|+|...
T Consensus        20 ~~g--~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGR--QLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSC--EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCC--eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            455  8999999999999999999998764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.78  E-value=6.5e-06  Score=72.15  Aligned_cols=38  Identities=21%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             cCccccCCC--CCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214            8 DDWELTSPS--NGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (285)
Q Consensus         8 ~~~~~~~~~--~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~   47 (285)
                      ..+++.+..  +  .+++|+|+||+|||||++.|+|...+..
T Consensus       159 ~~v~~~v~~~lg--~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          159 KFIPKEARPFFA--KTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             GGSCTTTGGGTC--EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hhCCHHHHHhhh--CeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            446677777  7  8999999999999999999998765543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.78  E-value=0.00011  Score=72.51  Aligned_cols=40  Identities=23%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             CCCcccCccccCCC-------CCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214            3 GSAIDDDWELTSPS-------NGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus         3 ~~~~~~~~~~~~~~-------~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      +..+++++++.+..       |  ..++|+||||+|||||+++| |...+
T Consensus       768 ~~~v~ndi~l~~~~~~~~~~~g--~i~~ItGpNgsGKSTlLr~i-Gl~~~  814 (1022)
T 2o8b_B          768 DDFIPNDILIGCEEEEQENGKA--YCVLVTGPNMGGKSTLMRQA-GLLAV  814 (1022)
T ss_dssp             CCCCCEEEEESCCCSCC---CC--CEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred             CceEeeeeeeccccccccCCCC--cEEEEECCCCCChHHHHHHH-HHHHH
Confidence            45678888888876       6  79999999999999999999 76543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.74  E-value=1.3e-05  Score=62.84  Aligned_cols=24  Identities=29%  Similarity=0.639  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|+|+||||||||++.|++..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.71  E-value=1.9e-05  Score=67.56  Aligned_cols=30  Identities=23%  Similarity=0.218  Sum_probs=26.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      +..|  ..|+|+|+||||||||++.|+|...+
T Consensus        87 ~~~g--~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVP--FIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCC--EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCC--EEEEEECCCCchHHHHHHHHHhhccc
Confidence            5666  89999999999999999999987654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.70  E-value=1.5e-05  Score=75.40  Aligned_cols=31  Identities=29%  Similarity=0.460  Sum_probs=28.7

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHH
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATG   36 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTll   36 (285)
                      ..+++++|++++.|  ..++|+|+||||||||+
T Consensus        31 ~~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           31 AHNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             STTCCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred             ccceeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence            45789999999999  89999999999999997

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.69  E-value=1.1e-05  Score=76.31  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ...+++++.++.|  ..++|+|+||||||||+++|+
T Consensus       336 ~~L~~vsl~I~~G--e~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          336 HNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TTCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTH
T ss_pred             cccccceeEecCC--CEEEEEeeCCCCHHHHHHHHH
Confidence            4578999999999  899999999999999998765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.69  E-value=1.9e-05  Score=62.80  Aligned_cols=31  Identities=32%  Similarity=0.571  Sum_probs=24.6

Q ss_pred             cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      |++...|  ..|+|+||+|+|||||++.|++..
T Consensus        13 ~~~~~~g--~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           13 NLYFQGR--KTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ---CCSC--CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCC--CEEEEECcCCCCHHHHHHHHHhhC
Confidence            4555566  799999999999999999999754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.67  E-value=1.6e-05  Score=63.03  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      .+++|+|+||+|||||++.|+|...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            5799999999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.66  E-value=5.8e-06  Score=68.51  Aligned_cols=39  Identities=23%  Similarity=0.295  Sum_probs=33.4

Q ss_pred             CCCcccCccccCCC---CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            3 GSAIDDDWELTSPS---NGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         3 ~~~~~~~~~~~~~~---~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +..+++++++.+..   |  ..|+|+|++|+||||+.+.|++..
T Consensus        31 ~~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           31 EQQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             -CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHHhc
Confidence            45678889999998   8  799999999999999999997643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.66  E-value=7.4e-06  Score=74.82  Aligned_cols=38  Identities=24%  Similarity=0.160  Sum_probs=31.2

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      .+++++.+..|  ..++|+|+||||||||+++|+|...+.
T Consensus       250 l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~  287 (511)
T 2oap_1          250 LAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPD  287 (511)
T ss_dssp             HHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             HHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            34566677778  689999999999999999999877543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.66  E-value=7e-06  Score=70.23  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=24.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..|  ..|+|+|+||||||||++.|+|...
T Consensus        78 ~~g--~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIP--YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCC--EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCC--EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            455  8999999999999999999998543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.65  E-value=3e-05  Score=60.70  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=27.4

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +++++.+.+|   ..+|+|+||+|||||+++|.+..
T Consensus        18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHH
Confidence            5667777776   78999999999999999987544

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.64  E-value=2.3e-05  Score=62.51  Aligned_cols=29  Identities=28%  Similarity=0.576  Sum_probs=22.5

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +....|  ..|+|+|++||||||+++.|++.
T Consensus        24 m~~~~g--~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           24 MTGEPT--RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ----CC--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hcCCCC--cEEEEECCCCCCHHHHHHHHHHh
Confidence            444556  79999999999999999999764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.63  E-value=1.7e-05  Score=63.21  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=28.5

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      +..++....|  ..|+|+|++|+||||+++.|++...
T Consensus        16 ~~~~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           16 DRQRLLDQKG--CVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             HHHHHHTSCC--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCC--eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3445556677  8999999999999999999987653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.62  E-value=1.9e-05  Score=66.93  Aligned_cols=40  Identities=15%  Similarity=0.082  Sum_probs=34.2

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      +.++++++.+..|  ..++|+|+||+|||||++.|++...+.
T Consensus        23 ~~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           23 TGINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             TTHHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            4567788889999  899999999999999999998766543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.61  E-value=2.9e-05  Score=64.03  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCccccc
Q 023214           20 RTVVLVGRTGNGKSATGNSIL---GRRAFKS   47 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~---g~~~~~~   47 (285)
                      ..|+|+|+|||||||+++.|+   |...+..
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~   58 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSS   58 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence            699999999999999999999   8766543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.60  E-value=1.3e-05  Score=65.14  Aligned_cols=30  Identities=13%  Similarity=0.194  Sum_probs=25.9

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      -++.|  ..++|+|+||+|||||++.|+|...
T Consensus        21 gi~~G--~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           21 GIETQ--AITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             SEESS--EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCC--cEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45677  8999999999999999999998543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.56  E-value=2.4e-05  Score=61.21  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=25.2

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      .++.|  ..++|+|++|+|||||+++|++...
T Consensus        34 ~~~~g--~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           34 NPEEG--KGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CGGGC--CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             cccCC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34456  7899999999999999999997664

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.56  E-value=4.2e-05  Score=61.41  Aligned_cols=28  Identities=21%  Similarity=0.381  Sum_probs=24.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ++|  ..|+|+|||||||||+++.|++...
T Consensus         6 ~~g--~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERG--LLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCC--CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCC--cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            345  7899999999999999999998753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.54  E-value=3.2e-05  Score=67.88  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=26.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      +.+|  ..|+|+|+||||||||+++|+|...+
T Consensus       133 ~~~g--~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          133 HRKM--GLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             TSSS--EEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             hcCC--CEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            5666  79999999999999999999986643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.54  E-value=2.2e-05  Score=72.10  Aligned_cols=40  Identities=23%  Similarity=0.187  Sum_probs=34.0

Q ss_pred             CCCcccCccc-cCCCCCceEEEEEcCCCCCHHHHHHH--HhCCcc
Q 023214            3 GSAIDDDWEL-TSPSNGERTVVLVGRTGNGKSATGNS--ILGRRA   44 (285)
Q Consensus         3 ~~~~~~~~~~-~~~~~~~~~i~lvG~~g~GKSTlln~--l~g~~~   44 (285)
                      +.+.++++++ .++.|  ..++|+|+||||||||++.  +.|...
T Consensus        24 g~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             CCTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             CchhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            4567888999 99999  8999999999999999999  455443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.53  E-value=2.3e-05  Score=65.82  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=28.3

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .++.++++.++.|    ++|+|+||+|||||+++|+|..
T Consensus        34 ~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           34 DQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             HHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHc
Confidence            3456667776655    9999999999999999999754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.52  E-value=4.5e-05  Score=63.19  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCccccc
Q 023214           20 RTVVLVGRTGNGKSATGNSIL---GRRAFKS   47 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~---g~~~~~~   47 (285)
                      ..|+|+|++||||||+++.|+   |...+.+
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~   58 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRLLDS   58 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence            799999999999999999999   7665444

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.45  E-value=3.6e-05  Score=67.53  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=30.4

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ++.++++.++.|  ..++|+|++|+|||||++.|++.
T Consensus       158 ~l~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          158 FLKCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHhcccccCCC--CEEEEECCCCCCHHHHHHHHHhh
Confidence            355677888988  79999999999999999999963

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.45  E-value=4.8e-05  Score=59.90  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..++|+|+|||||||+++.|++
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999985

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.44  E-value=6.4e-05  Score=61.31  Aligned_cols=30  Identities=23%  Similarity=0.218  Sum_probs=25.9

Q ss_pred             cccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +....+|  ..|+|+|++||||||+++.|.+.
T Consensus        14 ~~~~~~g--~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           14 YAEGTQP--FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             BTTTCCC--EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCCc--eEEEEECCCCCCHHHHHHHHHhc
Confidence            4455677  89999999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.43  E-value=7.8e-05  Score=57.87  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++||||||+++.|.+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            78999999999999999998753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.0011  Score=59.21  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||+|.++|++..
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            679999999999999999999643

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.41  E-value=5.9e-05  Score=67.09  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~   46 (285)
                      .++  ..|+|+|+||||||||+++|+|...+.
T Consensus       165 ~~g--gii~I~GpnGSGKTTlL~allg~l~~~  194 (418)
T 1p9r_A          165 RPH--GIILVTGPTGSGKSTTLYAGLQELNSS  194 (418)
T ss_dssp             SSS--EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             hcC--CeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence            445  689999999999999999999876543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.37  E-value=0.00011  Score=55.73  Aligned_cols=29  Identities=28%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             CccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214            9 DWELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +..+.+.++   ..+|+|+||+||||++.+|.
T Consensus        16 ~~~i~f~~g---~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           16 DTVVEFKEG---INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEcCCC---eEEEECCCCCCHHHHHHHHH
Confidence            344555544   67899999999999999976

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.36  E-value=7.4e-05  Score=65.38  Aligned_cols=31  Identities=26%  Similarity=0.290  Sum_probs=25.5

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +.+.++.++.|   -.+|+|+|||||||++++|+
T Consensus        14 ~~~~~i~~~~g---~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           14 LKNVDIEFQSG---ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence            34567777776   46799999999999999987

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.35  E-value=7.5e-05  Score=57.77  Aligned_cols=24  Identities=38%  Similarity=0.642  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++||||||+++.|++..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.31  E-value=5.9e-05  Score=62.38  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=26.1

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.++++.++.|    ++|+|++|+|||||+++|++..
T Consensus        41 ~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           41 FHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHh
Confidence            44555555544    8999999999999999999754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.29  E-value=0.00016  Score=56.67  Aligned_cols=31  Identities=19%  Similarity=0.454  Sum_probs=24.7

Q ss_pred             ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .++....+  .+|+|+|++||||||+.+.|...
T Consensus         3 ~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            3 GSMEQPKG--INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ---CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence            46666777  79999999999999999999754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.28  E-value=0.00019  Score=57.27  Aligned_cols=29  Identities=14%  Similarity=0.217  Sum_probs=24.9

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+..+  ..|+|+|++|+||||+++.|.+..
T Consensus        17 ~~~~~--~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKT--FIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CSCCC--EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cCCCC--eEEEEECCCCCCHHHHHHHHHHhc
Confidence            44555  799999999999999999999864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.0021  Score=56.57  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||+|.+++++..
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHhh
Confidence            568999999999999999999654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.26  E-value=0.00012  Score=63.78  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=28.3

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .+.++++.+..|   ..+|+|+||+||||++++|.+
T Consensus        16 ~~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           16 NLAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             TCCSEEEECCSE---EEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeeeEEEEcCC---eEEEECCCCCChhHHHHHHHH
Confidence            356778888776   889999999999999999885

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.0013  Score=58.18  Aligned_cols=24  Identities=25%  Similarity=0.542  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||+|.++|++..
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e~  240 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQT  240 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHHh
Confidence            679999999999999999999654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.25  E-value=8.5e-05  Score=60.16  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=27.8

Q ss_pred             ccCccc-cCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            7 DDDWEL-TSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         7 ~~~~~~-~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ++++.. -++.|  ..++|+|+||+|||||++.|++..
T Consensus        12 Ld~~~~ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           12 FDKLIQGGIPQG--FFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             HHGGGTTSEETT--CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcCC--CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            444443 56777  789999999999999999998554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.25  E-value=7.9e-05  Score=62.55  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=26.1

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.++++.++.|    ++|+|++|+|||||+++|++..
T Consensus        65 l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           65 FHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHc
Confidence            44555665544    8999999999999999999754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0026  Score=56.60  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||+|+++|++..
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999999643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.22  E-value=0.00019  Score=57.18  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999987

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.20  E-value=6.7e-05  Score=58.34  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      ..++|+|++|+|||||++.|++...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            47999999999999999999987543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.19  E-value=0.00019  Score=61.44  Aligned_cols=26  Identities=19%  Similarity=0.166  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+..|+|+|++|||||||++.|.+..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999997654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.19  E-value=0.00013  Score=55.34  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..++|+|++|+|||||+++|++...
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999997654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.19  E-value=0.00017  Score=61.79  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+.++|+|++|||||||+|.|+|..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3688999999999999999999764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.19  E-value=0.00019  Score=57.14  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++|+|||||++.|.+..
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            799999999999999999998654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.16  E-value=0.00018  Score=58.24  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+|+|+|++||||||+++.|.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.16  E-value=0.00017  Score=57.42  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .+|+|+|++||||||+++.|++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.10  E-value=0.00026  Score=56.47  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++||||||+++.|+...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            789999999999999999998543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.10  E-value=2.5e-05  Score=63.63  Aligned_cols=28  Identities=25%  Similarity=0.243  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++|+||||+|||||+++|+|...+.++
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G   56 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPDLT   56 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            6789999999999999999987765543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.06  E-value=0.00034  Score=55.89  Aligned_cols=29  Identities=28%  Similarity=0.437  Sum_probs=22.6

Q ss_pred             CccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214            9 DWELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +..+.+.++   ..+|+|+||+||||++.+|.
T Consensus        16 ~~~i~f~~~---~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           16 DTVVEFKEG---INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEeCCC---eEEEEcCCCCCHHHHHHHHH
Confidence            344555544   77899999999999999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.05  E-value=0.002  Score=50.97  Aligned_cols=82  Identities=7%  Similarity=-0.010  Sum_probs=46.0

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (285)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~  147 (285)
                      ...++|+|||+..+     ..    ....    +..+|.+++++.++ ..+..-...++.+...-......++.+|+|+.
T Consensus        75 ~yD~viiD~~~~~~-----~~----~~~~----l~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-----VI----TSAA----VMVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS-----HH----HHHH----HHHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC-----HH----HHHH----HHHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            45799999998652     11    1112    22358889898886 44433445555555432111122668999999


Q ss_pred             CCCCCChhcHHHHhhh
Q 023214          148 DELEDNDETLEDYLGR  163 (285)
Q Consensus       148 D~~~~~~~~l~~~l~~  163 (285)
                      |........+.++++.
T Consensus       141 ~~~~~~~~~~~~~l~~  156 (206)
T 4dzz_A          141 IEMATMLNVLKESIKD  156 (206)
T ss_dssp             CTTEEEEHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHH
Confidence            8543322344555543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.0016  Score=57.97  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||+|.++|++..
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHHh
Confidence            689999999999999999999654

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.03  E-value=0.00035  Score=59.97  Aligned_cols=31  Identities=23%  Similarity=0.225  Sum_probs=25.7

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ++.++.+.+|   ..+|+|+||+|||||+++|..
T Consensus        16 ~~~~l~~~~g---~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           16 RPSLIGFSDR---VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             SCEEEECCSS---EEEEECCTTTCSTHHHHHHHH
T ss_pred             CCeEEecCCC---cEEEECCCCCcHHHHHHHHHH
Confidence            4556777666   789999999999999999873

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.0033  Score=56.19  Aligned_cols=24  Identities=25%  Similarity=0.565  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||+|.++|++..
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e~  267 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANRT  267 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHHH
T ss_pred             CceEeeCCCCCcHHHHHHHHHhcc
Confidence            689999999999999999999654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.99  E-value=0.00014  Score=70.50  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      .++++++.++.|  ..++|+|+||+|||||++.|+
T Consensus       639 ~Lk~Vsl~I~~G--eiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          639 NLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SCCSEEEEEESS--SEEECCBCTTSSHHHHHTTTH
T ss_pred             ccccceEEEcCC--CEEEEEcCCCCCHHHHHHHHH
Confidence            578899999999  899999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.95  E-value=0.00041  Score=54.60  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      -|+|+||+|+|||||++.|+...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999998543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.93  E-value=0.0058  Score=52.68  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..++|+|++|+||||+++.|++.
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999999874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.93  E-value=0.00044  Score=55.42  Aligned_cols=27  Identities=11%  Similarity=-0.032  Sum_probs=24.5

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      -++.|  ..++|+|++|+|||||+..|++
T Consensus        16 gi~~G--~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPG--VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            46777  7999999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.92  E-value=0.00043  Score=53.87  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|+|++|+|||||++.|++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            689999999999999999998653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.91  E-value=0.0002  Score=58.37  Aligned_cols=28  Identities=11%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      -++.|  ..++|+|+||+|||||+..|++.
T Consensus        20 gi~~G--~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETG--SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCC--eEEEEECCCCCcHHHHHHHHHHH
Confidence            35677  79999999999999999999974

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.87  E-value=0.00011  Score=70.70  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHH-HhC
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNS-ILG   41 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~-l~g   41 (285)
                      .++++++.++.|  ..++|+|+||+|||||++. |+|
T Consensus       512 ~L~~vsl~i~~G--eiv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          512 NLDNLDVRFPLG--VMTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             TEEEEEEEEESS--SEEEEECCTTSSHHHHCCCCCHH
T ss_pred             ccccceEEEcCC--CEEEEEcCCCcCHHHHHHHHHHH
Confidence            467899999999  8999999999999999996 553

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.86  E-value=0.00051  Score=54.52  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++||||||+.+.|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.86  E-value=0.00058  Score=57.71  Aligned_cols=27  Identities=26%  Similarity=0.281  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ....|+|+|++|||||||++.|.+...
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            347999999999999999999987654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.85  E-value=0.055  Score=52.52  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|+|++|+||||+++.|+...
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            578999999999999999998654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.85  E-value=0.00047  Score=59.62  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=21.5

Q ss_pred             cccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214           11 ELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      .+.+.+|   ..+|+|+||+||||++.+|+
T Consensus        18 ~i~f~~~---~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           18 VVEFKEG---INLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             EEcCCCC---eEEEECCCCCCHHHHHHHHH
Confidence            4445444   66899999999999999875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.84  E-value=0.00023  Score=61.85  Aligned_cols=31  Identities=13%  Similarity=0.134  Sum_probs=27.6

Q ss_pred             cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+.++.|  ..++|+|+||+|||||++.|++..
T Consensus       125 ~ggi~~G--~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          125 GGGIETQ--AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             TSSEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCCCCC--eEEEEECCCCCCHHHHHHHHHHHh
Confidence            4667888  899999999999999999999765

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.83  E-value=0.00065  Score=52.16  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++||||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999999743

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.82  E-value=0.00066  Score=52.12  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSI   39 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l   39 (285)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57999999999999999999

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.82  E-value=0.00052  Score=66.68  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHH
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGN   37 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln   37 (285)
                      ..++++++.++.|  ..++|+|+||+|||||++
T Consensus       598 ~~Lk~Vsl~I~~G--eiv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          598 NNLKNIDVEIPLG--VFVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             TTCCSEEEEEESS--SEEEEECSTTSSHHHHHH
T ss_pred             ccccccceEEcCC--cEEEEEccCCCChhhhHH
Confidence            3578899999999  899999999999999973

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.81  E-value=0.00064  Score=52.83  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|.+||||||+++.|.+..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998643

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.80  E-value=0.00088  Score=57.79  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.5

Q ss_pred             cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      +..+..|....+++.|++|+||||+++.+++...
T Consensus        38 ~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           38 RKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             HHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            3334455334489999999999999999987653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.79  E-value=0.00056  Score=57.31  Aligned_cols=28  Identities=21%  Similarity=0.226  Sum_probs=24.2

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      -++.|  ..++|+|+||+|||||+..|++.
T Consensus        26 gl~~G--~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           26 NMVAG--TVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TEETT--SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35667  79999999999999999999863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.77  E-value=0.00075  Score=52.64  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|+.
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999973

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.74  E-value=0.0009  Score=51.74  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999985

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.73  E-value=0.0011  Score=53.98  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .|  ..|+|.|++||||||+++.|....
T Consensus        25 ~g--~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           25 MS--AFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CC--EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CC--eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56  899999999999999999998654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.73  E-value=0.00072  Score=60.41  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=25.3

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      +.+..+  ..++|+|+||+|||||+++|.+...+
T Consensus        21 ~~~~~~--~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           21 VGFGES--NFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             EECTTC--SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEecCC--CEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            344444  68899999999999999999875543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.72  E-value=0.0006  Score=58.78  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|+||||+|||||+++|++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            479999999999999999999765

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.70  E-value=0.0011  Score=52.47  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|..
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.012  Score=46.47  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..++|.|++|+||||+++.++..
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.70  E-value=0.0012  Score=51.49  Aligned_cols=28  Identities=21%  Similarity=0.264  Sum_probs=23.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ...+  ..|+|+|.+|+||||+++.|+...
T Consensus        10 ~~~~--~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           10 IEKG--IVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CSCC--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCC--cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3445  799999999999999999998654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.65  E-value=0.0011  Score=52.45  Aligned_cols=22  Identities=27%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .|+|+|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999854

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.64  E-value=0.00086  Score=60.93  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..+.++++.++.|    |+|+|++|+|||||+++|++..
T Consensus        54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHT
T ss_pred             hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHh
Confidence            3456666666554    8999999999999999999754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.63  E-value=0.0012  Score=51.15  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++||||||+.+.|....
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            579999999999999999998543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.62  E-value=0.013  Score=47.99  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|.|++|+|||++++.|+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999853

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.61  E-value=0.0012  Score=51.41  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|+.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999974

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.60  E-value=0.0013  Score=51.00  Aligned_cols=21  Identities=29%  Similarity=0.623  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..|+|+|++|+||||+.+.|.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHH
Confidence            689999999999999999997

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.60  E-value=0.00055  Score=62.97  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=26.2

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      .+..|  ..|+|+|+||||||||+++|++...+
T Consensus       365 ~~~~G--~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          365 RERQG--FTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             GGGSC--EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             ccccc--eEEEEECCCCChHHHHHHHHHHhhcc
Confidence            34567  89999999999999999999987643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.59  E-value=0.0013  Score=51.31  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999874

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.59  E-value=0.00074  Score=58.36  Aligned_cols=37  Identities=24%  Similarity=0.223  Sum_probs=29.7

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ...+++.+..|...+|+|+|++|+||||+.+.|++..
T Consensus        12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3445566777766779999999999999999988654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.58  E-value=0.0015  Score=51.63  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ...|+|+|++||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            378999999999999999999854

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.55  E-value=0.0017  Score=50.88  Aligned_cols=22  Identities=14%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.52  E-value=0.0012  Score=50.95  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .+|+|+|++||||||+.+.|+..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999999999743

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.52  E-value=0.0016  Score=52.10  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=24.5

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ....|  ..|+|+|++|+||||+++.|.+..
T Consensus        21 ~~~~~--~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           21 RNQRG--LTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             HTSSC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCC--CEEEEECCCCCCHHHHHHHHHHHh
Confidence            44556  789999999999999999998654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.51  E-value=0.0019  Score=51.97  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|.|++|+|||||++.++...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999987543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.50  E-value=0.0015  Score=50.96  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.49  E-value=0.0067  Score=54.75  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|+|++|+|||++++.|+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            588999999999999999988654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.47  E-value=0.0016  Score=52.18  Aligned_cols=21  Identities=33%  Similarity=0.664  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 023214           21 TVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999963

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.47  E-value=0.0016  Score=53.78  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++|||||||.+.|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            36899999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.46  E-value=0.0019  Score=51.01  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|+.||||||+.+.|....
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998543

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.45  E-value=0.0024  Score=50.52  Aligned_cols=23  Identities=17%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ...|+|+|++||||||+.+.|+.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.43  E-value=0.0014  Score=54.03  Aligned_cols=24  Identities=33%  Similarity=0.643  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|+|++|+||||++++|++..
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHc
Confidence            469999999999999999998643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.43  E-value=0.0019  Score=49.82  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..++++|++|+|||||++.|+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999998864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.42  E-value=0.0018  Score=51.92  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 023214           21 TVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.42  E-value=0.0013  Score=57.52  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=23.6

Q ss_pred             cCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      .+..+.+.+|   -.+|+|+||+||||++.+|.
T Consensus        17 ~~~~i~f~~g---l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           17 VNSRIKFEKG---IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEECCSE---EEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence            3445566555   77899999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.42  E-value=0.002  Score=51.28  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|.+||||||+.+.|...
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999999743

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.42  E-value=0.012  Score=49.14  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..++|.|++|+||||+++.|++.
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            67999999999999999999854

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.41  E-value=0.002  Score=50.44  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998863

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.40  E-value=0.002  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|+.
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.40  E-value=0.0025  Score=49.72  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.39  E-value=0.0021  Score=51.60  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+++.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999975

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.39  E-value=0.012  Score=56.36  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||+|+++|++..
T Consensus       239 ~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            679999999999999999999764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.38  E-value=0.0022  Score=50.87  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|.|++||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.36  E-value=0.0022  Score=50.23  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.35  E-value=0.0023  Score=53.94  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|+.
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999974

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.35  E-value=0.0026  Score=50.60  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|.+||||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            78999999999999999999743

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.31  E-value=0.0026  Score=51.80  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .+|+|+|++|+||||+.+.|++
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999999985

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.31  E-value=0.017  Score=50.26  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .++|.|++|+|||||++.+++..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.31  E-value=0.017  Score=47.87  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ...+.|.|++|+|||++++.|+..
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            368999999999999999999853

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.30  E-value=0.0023  Score=52.08  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++|+||||+.+.|..
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999984

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.30  E-value=0.0018  Score=53.45  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++||||||+.+.|...
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            78999999999999999999754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.26  E-value=0.0021  Score=56.13  Aligned_cols=32  Identities=16%  Similarity=0.119  Sum_probs=28.1

Q ss_pred             CccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214            9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      |+.+++.+|  .+++|+|++|+|||||++.|++.
T Consensus       166 D~~~pi~rG--Qr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          166 DLASPIGRG--QRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHHSCCBTT--CEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeeecCC--cEEEEecCCCCChhHHHHHHHHH
Confidence            566788888  89999999999999999988754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.26  E-value=0.0018  Score=52.67  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=22.8

Q ss_pred             cccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214           11 ELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..-++.|  ..++|+|+||+|||||+..++
T Consensus        17 ~gGl~~G--~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           17 HGGIPER--NVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TTSEETT--CEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCCC--cEEEEECCCCCCHHHHHHHHH
Confidence            3446677  789999999999999977665

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.26  E-value=0.0025  Score=50.08  Aligned_cols=23  Identities=17%  Similarity=0.590  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++||||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998743

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.24  E-value=0.0029  Score=51.88  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .+|+|+|++||||||+.+.|+.
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999999973

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.23  E-value=0.0026  Score=51.46  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|+.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999974

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.23  E-value=0.0027  Score=48.46  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 023214           21 TVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.21  E-value=0.0011  Score=52.92  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .|+|+|++||||||+++.|....
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.19  E-value=0.0024  Score=49.66  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .+|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.18  E-value=0.0026  Score=51.22  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++||||||+.+.|+..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998743

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.16  E-value=0.0031  Score=49.26  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 023214           21 TVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.15  E-value=0.0029  Score=50.59  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 023214           21 TVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.14  E-value=0.002  Score=59.11  Aligned_cols=32  Identities=16%  Similarity=0.172  Sum_probs=27.2

Q ss_pred             cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      +..+.+|  ..++|+|+||+|||||++.|+|...
T Consensus       275 ~g~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          275 GGGFFKD--SIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             TSSEESS--CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3456777  7999999999999999999998654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.14  E-value=0.0034  Score=51.63  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ...|+|.|++||||||+.+.|..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.13  E-value=0.0028  Score=48.67  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.11  E-value=0.022  Score=45.30  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             CceEEEEeCCCC-CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEe
Q 023214           68 GQVVNVIDTPGL-FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFT  145 (285)
Q Consensus        68 ~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~n  145 (285)
                      ...+.|+|||+. .+.    .     ....    +..+|.+++++.++ ..+-.. ...++.+... . .  .++.+|+|
T Consensus        67 ~yD~viiD~p~~~~~~----~-----~~~~----l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-~-~--~~~~vv~N  128 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE----D-----LEAL----ADGCDLLVIPSTPD-ALALDALMLTIETLQKL-G-N--NRFRILLT  128 (209)
T ss_dssp             GCSEEEEEEECCCSSS----H-----HHHH----HHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT-C-S--SSEEEEEC
T ss_pred             cCCEEEEeCCCCcCcH----H-----HHHH----HHHCCEEEEEecCC-chhHHHHHHHHHHHHhc-c-C--CCEEEEEE
Confidence            456899999986 431    1     1111    33568888887765 222222 2333344332 1 1  26889999


Q ss_pred             CCCCCC-CChhcHHHHhh
Q 023214          146 GGDELE-DNDETLEDYLG  162 (285)
Q Consensus       146 k~D~~~-~~~~~l~~~l~  162 (285)
                      +.+... .....+.++++
T Consensus       129 ~~~~~~~~~~~~~~~~l~  146 (209)
T 3cwq_A          129 IIPPYPSKDGDEARQLLT  146 (209)
T ss_dssp             SBCCTTSCHHHHHHHHHH
T ss_pred             ecCCccchHHHHHHHHHH
Confidence            998654 32234444454

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.08  E-value=0.0038  Score=49.28  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ...|+|+|..||||||+.+.|..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999999874

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.08  E-value=0.0012  Score=60.39  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=26.0

Q ss_pred             ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ++++++.+.+|   ..+|+|+||+|||||+.+|.
T Consensus        51 ~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~   81 (517)
T 4ad8_A           51 ITQLELELGGG---FCAFTGETGAGKSIIVDALG   81 (517)
T ss_dssp             BSCEEEECCCS---EEEEEESHHHHHHHHTHHHH
T ss_pred             eeeEEEecCCC---eEEEEcCCCCCHHHHHHHHH
Confidence            45667777776   67899999999999999984

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.08  E-value=0.0045  Score=51.91  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 023214           18 GERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ....|+|+|++||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34789999999999999999997

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.07  E-value=0.00096  Score=62.28  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      +...+++.+..|  ..++|+|++|+|||||+++|++...
T Consensus        49 ~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           49 AVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             hHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            344556667777  7999999999999999999998764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.03  E-value=0.0028  Score=49.13  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.01  E-value=0.05  Score=46.39  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|.|++|+|||+|++.++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            689999999999999999998543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.01  E-value=0.0039  Score=50.30  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 023214           21 TVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999863

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.00  E-value=0.0041  Score=47.54  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ...|+|+|.+||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.96  E-value=0.0046  Score=51.15  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999999874

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.93  E-value=0.076  Score=45.03  Aligned_cols=22  Identities=14%  Similarity=0.315  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      -+.+.|++|+||||+++.|+..
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHHH
Confidence            4555666999999999999743

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.89  E-value=0.0053  Score=47.43  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|.|++|+||||+++.++...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999988543

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.89  E-value=0.0055  Score=53.15  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|.|++|+||||+++.++...
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999987543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.88  E-value=0.0051  Score=48.55  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..+.|.|++|+|||||++.|+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999998544

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.87  E-value=0.0049  Score=49.19  Aligned_cols=23  Identities=22%  Similarity=0.523  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +|+|+|++||||+|....|+...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.87  E-value=0.0053  Score=51.95  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|.|++|+|||||+++|++..
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCcCHHHHHHHHHHHh
Confidence            689999999999999999998643

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.86  E-value=0.017  Score=50.12  Aligned_cols=24  Identities=38%  Similarity=0.558  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|.|++|+||||+++.++...
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998544

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.85  E-value=0.0089  Score=53.06  Aligned_cols=25  Identities=36%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ....|+|+|++||||||+.+.|+..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3478999999999999999999753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.84  E-value=0.0048  Score=49.47  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|+|++||||||+.+.|+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.83  E-value=0.0052  Score=48.60  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|.|++||||||+.+.|...
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            37999999999999999998753

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.81  E-value=0.0034  Score=57.79  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..++|+|++|+|||||+++|++...
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6899999999999999999987653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.77  E-value=0.0032  Score=56.88  Aligned_cols=24  Identities=29%  Similarity=0.637  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|+|++|+|||||+++|++..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            358999999999999999999754

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.77  E-value=0.0044  Score=54.70  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ++.|  ..++|+|++|+|||||+..|+
T Consensus       175 I~~G--ei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETG--SITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETT--SEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCC--cEEEEEcCCCCChHHHHHHHH
Confidence            4566  799999999999999999654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.74  E-value=0.0063  Score=49.34  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++||||||+.+.|+..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998743

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.73  E-value=0.0068  Score=48.86  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++|.|++|+|||||++.++...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.72  E-value=0.0071  Score=48.65  Aligned_cols=24  Identities=17%  Similarity=0.495  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|.|+|++||||+|....|+...
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            567889999999999999988543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.71  E-value=0.0054  Score=53.94  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..++++|++|+|||||++.|+...
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            688999999999999999998654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.049  Score=46.36  Aligned_cols=24  Identities=8%  Similarity=0.099  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..+.|.|++|+|||++++.++...
T Consensus        46 ~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           46 KLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            799999999999999999998655

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.63  E-value=0.033  Score=47.07  Aligned_cols=66  Identities=12%  Similarity=0.039  Sum_probs=42.3

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhCccccCeEEEEEeC
Q 023214           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG  146 (285)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~iil~nk  146 (285)
                      ..+.++||  ...+..           ....++.++|++++|+|++++. +... ..++..+..  . .  .|+++|+||
T Consensus        63 ~~~~iwD~--qer~~~-----------l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~-~--~piilv~NK  124 (301)
T 1u0l_A           63 GSGVIENV--LHRKNL-----------LTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--N-E--LETVMVINK  124 (301)
T ss_dssp             SSEEEEEE--CCCSCE-----------ETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--T-T--CEEEEEECC
T ss_pred             CeEEEEEE--ccccce-----------eeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--C-C--CCEEEEEeH
Confidence            47899998  332211           1114578899999999997664 4443 234444333  1 2  289999999


Q ss_pred             CCCCCC
Q 023214          147 GDELED  152 (285)
Q Consensus       147 ~D~~~~  152 (285)
                      +|+...
T Consensus       125 ~DL~~~  130 (301)
T 1u0l_A          125 MDLYDE  130 (301)
T ss_dssp             GGGCCH
T ss_pred             HHcCCc
Confidence            998654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.62  E-value=0.0093  Score=51.15  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..|+|+|++|+|||||...|+....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC
Confidence            5799999999999999999997653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.62  E-value=0.0072  Score=51.58  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++|+|||||...|+...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            589999999999999999988543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.60  E-value=0.0071  Score=51.99  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++|||||||...|+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            57999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-24
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-10
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	6e-06
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	9e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	5e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.001
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	0.001
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.002
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.004

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 96.0 bits (238), Expect = 3e-24
 Identities = 49/239 (20%), Positives = 97/239 (40%), Gaps = 17/239 (7%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
            L        T++++G+ G GKS+T NSI+G R        S       + R+    G  
Sbjct: 24  NLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFT 81

Query: 71  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQ 129
           +N+IDTPGL +    ++     I     +    I  +L V  +   R    ++    ++ 
Sbjct: 82  LNIIDTPGLIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAIT 139

Query: 130 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYL---GRECPKPLKKGATKLRDQQFE---- 182
             FGK I++  IV  T       +    +++         + ++ GA+  +D Q      
Sbjct: 140 DSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPV 199

Query: 183 --VDSLKGYSKREISELKEQMHKSYEDQL-KRITEMVESKLKETTTRLEQQLAEEQAAR 238
             +++    +K +  E       ++   L + ITE+  +K +     +++ L ++ AA 
Sbjct: 200 VLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIF--VDKNLIDKLAAA 256

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (141), Expect = 1e-10
 Identities = 31/236 (13%), Positives = 76/236 (32%), Gaps = 26/236 (11%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDGQ 69
            L    +    V + G TG+GKS+  N++ G    +  A+ +GV     E       +  
Sbjct: 48  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 107

Query: 70  VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 129
            V   D PG+   +   +   +++                +    +RF + +     ++ 
Sbjct: 108 NVVFWDLPGIGSTNFPPDTYLEKMKFY--------EYDFFIIISATRFKKNDIDIAKAIS 159

Query: 130 TLFGKKIFDYMIVVFTGGDELEDND----------ETLEDYLGRECPKPLKKGATKLRDQ 179
               K+       V T  D    N+          E +   +   C    ++    + + 
Sbjct: 160 M-MKKEF----YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE--NGIAEP 212

Query: 180 QFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQ 235
              + S K     +   L +++        +    +    + ++    ++Q  +++
Sbjct: 213 PIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQR 268

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 20/182 (10%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           V LVG    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
            ++  + +G E ++ I   +  ++ +              +        L  +     + 
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQM 201
            V               D L  E  K L     +       V +L G     +  LKE +
Sbjct: 122 KV---------------DLLEEEAVKALADALAREGLAVLPVSALTGAG---LPALKEAL 163

Query: 202 HK 203
           H 
Sbjct: 164 HA 165

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 16/187 (8%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            V LVG    GKS   + +   +     A     T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
           + +     +G + ++ I      I  V+ +  +  R   ++   ++   + +  ++ +  
Sbjct: 61  EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQ 200
            ++     ++ +  E LE +  +                 F + ++       + EL  +
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD----------YPVFPISAVTR---EGLRELLFE 166

Query: 201 MHKSYED 207
           +    E+
Sbjct: 167 VANQLEN 173

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 19/191 (9%), Positives = 58/191 (30%), Gaps = 11/191 (5%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           T++  GR+  GKS     + G++  + +             +                  
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY- 139
           +     +      ++      D    V+   +      + E+     +   F + + +  
Sbjct: 62  EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 140 --MIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISEL 197
              IV     D++++  E +     +      +   +++      + +  G +   I  L
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEK-----FEVPLSEIDKVFIPISAKFGDN---IERL 173

Query: 198 KEQMHKSYEDQ 208
           K ++ +   ++
Sbjct: 174 KNRIFEVIRER 184

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 19/189 (10%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL- 79
            V +VGR   GKS   N+IL +   ++  S    T+   +   V  DG+    +DT GL 
Sbjct: 10  KVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
                    V K     +  + +    V++V       +++++     ++      +  +
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 140 MIVVFTGGDELEDND--ETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISEL 197
                    E   ++  +   + L      PL               + KG++   I  +
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPL-----------IFTSADKGWN---IDRM 173

Query: 198 KEQMHKSYE 206
            + M+ +Y 
Sbjct: 174 IDAMNLAYA 182

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 28/211 (13%), Positives = 58/211 (27%), Gaps = 30/211 (14%)

Query: 22  VVLVGRTGNGKSATGNSIL---GRRAFKSRASSSGVTSTCEMQR-----------TVLKD 67
           V  +G   +GK+    ++                G       +R                
Sbjct: 6   VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65

Query: 68  GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 127
            +  + +D PG  D+        K ++       DG  A+LVV +      Q  E  L +
Sbjct: 66  KRHYSHVDCPGHADYI-------KNMITGAAQM-DG--AILVVSAADGPMPQTREHILLA 115

Query: 128 LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLK 187
            Q   G       +      D+ E  D    +   R+                    +L 
Sbjct: 116 RQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEV--RDLLNQY--EFPGDEVPVIRGSALL 169

Query: 188 GYSKREISELKEQMHKSYEDQLKRITEMVES 218
              +   +    +    + D++  + + ++ 
Sbjct: 170 ALEQMHRNPKTRRGENEWVDKIWELLDAIDE 200

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 23/219 (10%), Positives = 66/219 (30%), Gaps = 18/219 (8%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78
           + ++++ G   +GK++    +                 + E       DG  V ++D PG
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSV-------RPTVVSQEPLSAADYDGSGVTLVDFPG 55

Query: 79  LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKI 136
                        + +K       G+  ++       + +   E  L  + ++     + 
Sbjct: 56  HVKLRYKL----SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCEN 110

Query: 137 FDYMIVVFTGGDELE-DNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREIS 195
              +++     +         ++D L  E  K +++    L   + E    +        
Sbjct: 111 GIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL--NEVERKINEEDYAENTL 168

Query: 196 ELKEQMHKSYEDQLKRITEMVESKLKETTT-RLEQQLAE 233
           ++ +         L+      E  + +    +  + + E
Sbjct: 169 DVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDE 207

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 21/187 (11%), Positives = 59/187 (31%), Gaps = 15/187 (8%)

Query: 15  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
           PS+    V   GR+  GKS+  N++  +++     +S     T  +    + DG+ +  +
Sbjct: 12  PSDTGIEVAFAGRSNAGKSSALNTLTNQKSL--ARTSKTPGRTQLINLFEVADGKRLVDL 69

Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134
              G  +     +   +  +      +  +  ++V+  +R      ++  +         
Sbjct: 70  PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA 129

Query: 135 KIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREI 194
            +              +     + + +                 Q     SLK      +
Sbjct: 130 VLVLLTKADKLASGARKAQLNMVREAVLAFNGDV----------QVETFSSLKKQG---V 176

Query: 195 SELKEQM 201
            +L++++
Sbjct: 177 DKLRQKL 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.88
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.78
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.7
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.66
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.65
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.65
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.64
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.64
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.63
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.62
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.6
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.59
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.55
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.55
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.55
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.53
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.52
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.52
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.52
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.51
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.5
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.48
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.48
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.47
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.45
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.44
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.43
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.43
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.43
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.43
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.42
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.42
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.41
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.39
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.39
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.39
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.39
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.38
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.38
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.37
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.37
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.36
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.36
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.35
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.34
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.34
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.34
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.33
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.33
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.31
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.29
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.29
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.28
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.26
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.23
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.21
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.18
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.12
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.11
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.09
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.07
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.05
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.03
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.99
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.96
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.93
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.91
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.9
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.89
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.89
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.88
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.86
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.83
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.79
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.78
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.75
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.74
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.73
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.73
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.72
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.7
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.67
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.66
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.65
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.64
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.64
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.62
d1okkd2	207	GTPase domain of the signal recognition particle r	98.55
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.47
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.43
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.43
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.36
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.94
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.53
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.48
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.44
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.38
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.32
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.31
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.17
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.16
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.15
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.15
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.11
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.11
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.11
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.08
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.08
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.06
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.06
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.05
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.05
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.05
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.02
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.01
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.01
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.98
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.97
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.96
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.92
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.92
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.9
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.9
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.89
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.88
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.87
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.87
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.82
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.8
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.79
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.79
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.78
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.78
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.75
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.74
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.74
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.7
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.7
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.64
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.6
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.52
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.49
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.47
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.44
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.31
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.27
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.25
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.24
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.22
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.18
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.13
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.11
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.07
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.07
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.05
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.02
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.01
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.98
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.96
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.89
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.77
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.75
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.74
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.51
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.49
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.48
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.39
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.38
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.37
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.35
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.31
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.29
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.19
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.18
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.14
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.07
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.96
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.95
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.92
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.91
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.87
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.77
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.73
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.64
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.45
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.43
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.41
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.35
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.05
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.03
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.82
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.79
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.7
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.53
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.35
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.3
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.22
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.17
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.04
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.95
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.78
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.72
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.48
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.47
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.31
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.31
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.08
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.98
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.95
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.78
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.01
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.83
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.48
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.42
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.06
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.41
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.2
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	88.97
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.08
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.02
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	87.3
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	86.41
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	86.39
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.21
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.13
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	85.76
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.64
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.85
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.67
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.95
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	80.51

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.88  E-value=3e-22  Score=166.32  Aligned_cols=141  Identities=23%  Similarity=0.331  Sum_probs=115.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+|+|.+|+|||||+|+|+|...+..... .++|..+..+.... .+..++||||||+.++..........+..+. 
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~-~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~-  108 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL-  108 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT-
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCceeecCC-CCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHHH-
Confidence            48999999999999999999999998766533 46677777777777 7899999999999987665555555554443 


Q ss_pred             hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214           99 MAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~  163 (285)
                       ...++|+++||++++ .+++..+...+..+...||+..+.++++|+||+|...++...+++|+..
T Consensus       109 -~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~  173 (257)
T d1h65a_         109 -LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK  173 (257)
T ss_dssp             -TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred             -hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh
Confidence             235689999999884 4799999999999999999999999999999999987666778887764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=3.1e-18  Score=134.05  Aligned_cols=125  Identities=23%  Similarity=0.232  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|+|+|++|+|||||+|+|+|....... ...+.|.......... .+..+.++||||+.....   .....+...+..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~---~~~~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMD---ALGEFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCS---HHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec-ccCCcccccccceeee-eeeeeeeccccccccccc---ccchhccccccc
Confidence            48999999999999999999998753322 2234455555555555 688999999999986432   223444444555


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++|+|+.++++..+..++..++.....   .|+++|+||+|....
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKY  130 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSS
T ss_pred             ccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccC
Confidence            67889999999999888998887777777665333   289999999998765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=9.9e-17  Score=127.95  Aligned_cols=118  Identities=16%  Similarity=0.248  Sum_probs=88.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccc--c-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR--A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~--~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      ..+|+++|+.++|||||++.|++...-...  .             ...+.|+...+....+ .+..++|+||||+.++.
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGGH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhhH
Confidence            368999999999999999999743210000  0             0126777777788888 88999999999988752


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                             ..+.+.    ...+|++++|+|+.+++..+++..+..+... +-+   ++++++||+|....
T Consensus        82 -------~~~~~~----~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi~---~iiv~iNK~D~~~~  135 (204)
T d2c78a3          82 -------KNMITG----AAQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFMNKVDMVDD  135 (204)
T ss_dssp             -------HHHHHH----HTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCCC
T ss_pred             -------HHHHHH----HHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEEecccCCC
Confidence                   233333    4567999999999889999999999888775 432   57888999998754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=5.3e-16  Score=121.50  Aligned_cols=120  Identities=21%  Similarity=0.243  Sum_probs=82.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH----HHHHHHHH
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF----VGKEIVKC   96 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~----~~~~~~~~   96 (285)
                      .|+|+|++|+|||||+|+|+|.....+  ...++|....  ...+   ..+.++||||+.........    +...+..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~--~~~g~T~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRG--KRPGVTRKII--EIEW---KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSS--SSTTCTTSCE--EEEE---TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee--CCCCEeeccc--cccc---ccceecccCCceeccccccccccccchhhhhh
Confidence            689999999999999999999875322  2334555432  2222   34788999998766555433    34445555


Q ss_pred             HhhccCCccEEEEEEeCCC-----------CCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRS-----------RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +......+|++++|+|+..           .+...+...+..+... +    .|+++|+||+|....
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~----~p~iiv~NK~D~~~~  136 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-D----IPTIVAVNKLDKIKN  136 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-T----CCEEEEEECGGGCSC
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-C----CCEEEEEeeeehhhh
Confidence            5566677899999999742           3444455556655543 2    289999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=7.7e-16  Score=117.96  Aligned_cols=126  Identities=22%  Similarity=0.234  Sum_probs=85.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||+|+|+|........ ..+.+.........+ .+..+.++||||+.+......   .........
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~~   76 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVE---RIGIERAWQ   76 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHH---HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeec-ccccccceEeeeeec-cCceeeeccccccccccccch---hHHHHHHHH
Confidence            799999999999999999999987543222 233344433444555 688899999999987532222   222222334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ++..+|++++++++..+.+......+..+........  |+++|+||+|+...
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL--PITVVRNKADITGE  127 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTC--CEEEEEECHHHHCC
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhccccc--ceeeccchhhhhhh
Confidence            4667899999999976666555555554554444333  99999999997544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=1.1e-15  Score=121.10  Aligned_cols=138  Identities=20%  Similarity=0.286  Sum_probs=88.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHH
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGK   91 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~   91 (285)
                      .+.+..++|+|+|++|+|||||+|+|+|...........+.|.....  ..  ....+.++|+||..........  ...
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YI--INDELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE--EE--ETTTEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccc--cc--ccccceEEEEEeeccccccccccchhh
Confidence            34444579999999999999999999997642222222233333222  22  2445678999888755443332  222


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                      .+...........+++++|+|+.++++..+...+..+... +.    |+++|+||+|....  ....+++.
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-~~----piivv~NK~D~~~~--~~~~~~~~  157 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-GI----PVIVIATKADKIPK--GKWDKHAK  157 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCG--GGHHHHHH
T ss_pred             hHHhhhhccccchhhhhhhhhccccccccccccccccccc-cC----cceechhhccccCH--HHHHHHHH
Confidence            3333444556778999999999888999898888888764 32    89999999998765  55555444

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.64  E-value=4.7e-16  Score=126.20  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEE------------------EEeeCCceEEEEeCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR------------------TVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~------------------~~~~~~~~~~liDtpG~~~   81 (285)
                      +.|+|+|++++|||||+|+|++.......  ..+++.......                  ..+ .+..++++||||+.+
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTTSC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchhee--cCceeeeccccccccccccccccccccceeecc-cccccccccccceec
Confidence            57999999999999999999975432111  111111111111                  112 456799999999987


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +.....           .+...+|++++|+|+..+++..+...+..+... +.    |++|++||+|....
T Consensus        83 f~~~~~-----------~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~iivlNK~D~~~~  137 (227)
T d1g7sa4          83 FTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-RT----PFVVAANKIDRIHG  137 (227)
T ss_dssp             CTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSTT
T ss_pred             ccccch-----------hcccccceEEEEEecccCcccchhHHHHHhhcC-CC----eEEEEEECccCCCc
Confidence            644332           345678999999999889999999998888764 32    89999999998765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=6.9e-16  Score=127.59  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=90.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (285)
                      .++|+++|+.|+|||||+.+|+-......                .....+.|+.....+..| .+..++|+||||+.+|
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhh
Confidence            36899999999999999999862211100                011236677777888889 8999999999999998


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      .....       ..    +..+|+.++|+|+.+++.......|+.+... +  .  |.++++||+|....+
T Consensus        85 ~~e~~-------~~----l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~-~--l--P~i~fINKmDr~~ad  139 (276)
T d2bv3a2          85 TIEVE-------RS----MRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-K--V--PRIAFANKMDKTGAD  139 (276)
T ss_dssp             STTHH-------HH----HHHCCEEEEEEETTTSSCHHHHHHHHHHHTT-T--C--CEEEEEECTTSTTCC
T ss_pred             HHHHH-------HH----HHhhhheEEeccccCCcchhHHHHHHHHHHc-C--C--CEEEEEecccccccc
Confidence            65432       22    3455999999999889999999999988864 3  2  899999999998765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=3.5e-16  Score=122.33  Aligned_cols=126  Identities=16%  Similarity=0.123  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      .|+|+|.+|+|||||+|+|+|.......  ..+.|....+.......+..+.++||||+.............+.    ..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l----~~   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----RH   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----HH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceec--cCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHH----HH
Confidence            5999999999999999999998754332  23445555555555545778999999998753222111112222    23


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +..+++++++++...............+..........|+++|+||+|....
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~  128 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE  128 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH
Confidence            4567899999998533222222333333221111112389999999998865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.63  E-value=5.8e-15  Score=116.62  Aligned_cols=117  Identities=17%  Similarity=0.218  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      .+|+++|+.++|||||++.|++...-.              ......+.|.........+ .+..++++||||+.++   
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~f---   79 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHADY---   79 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHHH---
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHHH---
Confidence            689999999999999999998521100              0012246777777777777 7889999999996542   


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                              ..........+|++++|+|+.+++.++++..+..+... +.+   ++|+++||+|....
T Consensus        80 --------~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~~~---~iIv~iNK~D~~~~  134 (196)
T d1d2ea3          80 --------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GVE---HVVVYVNKADAVQD  134 (196)
T ss_dssp             --------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCSC
T ss_pred             --------HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-cCC---cEEEEEeccccccc
Confidence                    22233446778999999999889999998888888775 433   78999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.62  E-value=3.6e-15  Score=122.98  Aligned_cols=126  Identities=29%  Similarity=0.333  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc-------cc---------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKS-------RA---------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~-------~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (285)
                      ++|+++|+.|+|||||+.+|+.......       +.         ...+.|....+.+..| .+..++++||||+.+| 
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF-   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF-   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh-
Confidence            6899999999999999999963221110       00         1135677777788888 8999999999999886 


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                            ..+....+.    .+|++++|+|+.+++..+....++.+... +.    |.++++||+|........+.+...
T Consensus        81 ------~~e~~~al~----~~D~avlvvda~~Gv~~~t~~~~~~~~~~-~~----p~~i~iNk~D~~~~~~~~l~~~~~  144 (267)
T d2dy1a2          81 ------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKGGDYYALLEDLRS  144 (267)
T ss_dssp             ------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGCCCHHHHHHHHHH
T ss_pred             ------hhhhhhhhc----ccCceEEEeeccCCccchhHHHHHhhhhc-cc----ccccccccccccccchhhhhhHHH
Confidence                  233444443    45999999999889999999999988875 32    899999999975433333333333

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=1.4e-15  Score=119.30  Aligned_cols=127  Identities=22%  Similarity=0.228  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||+|+|+|......... .+.+..+......+ .+..+.++||||+......... ........+.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNKERALVSPI-PGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV   86 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCC-C------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcceeecc-cccccccceeeecc-CCceeeeeccCCccccccccccccccchhHHHH
Confidence            8999999999999999999999775333222 33444444555555 7888999999998643211110 0000001112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~  153 (285)
                      .....+|++++|+|+..++.......+..+... +.    |+++++||+|.....
T Consensus        87 ~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-~~----~~i~v~nK~D~~~~~  136 (186)
T d1mkya2          87 DSIEKADVVVIVLDATQGITRQDQRMAGLMERR-GR----ASVVVFNKWDLVVHR  136 (186)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSTTG
T ss_pred             HHHhcCCEEEEeecccccchhhHHHHHHHHHHc-CC----ceeeeccchhhhcch
Confidence            223456999999999878888887777776653 32    899999999987653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.7e-15  Score=132.63  Aligned_cols=116  Identities=21%  Similarity=0.189  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+|+|.+|+|||||+|+|+|......+..+.+   +|...  ..+.+..+.++++|||||+.............    
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~----  130 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEK----  130 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECCCGGGSSCCHHHHHHH----
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccCCCeEEEEeCCCcccccccHHHHHHH----
Confidence            8999999999999999999999765444433322   23322  22334356779999999998765444332211    


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                        ......|.++++.+  .+++..+...+..+... +.    |+++|+||+|..
T Consensus       131 --~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~k----~~~~V~nK~D~~  175 (400)
T d1tq4a_         131 --MKFYEYDFFIIISA--TRFKKNDIDIAKAISMM-KK----EFYFVRTKVDSD  175 (400)
T ss_dssp             --TTGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-TC----EEEEEECCHHHH
T ss_pred             --hhhhcceEEEEecC--CCCCHHHHHHHHHHHHc-CC----CEEEEEeCcccc
Confidence              12345677777766  57899999888888774 43    999999999964

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=8e-15  Score=113.47  Aligned_cols=122  Identities=22%  Similarity=0.260  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      +|+|+|++|+|||||+|.|+|......+ ...+.|.......... .+..+.++||||+........  ...........
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~--~~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDII--SQKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCC--CHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeeccccccccc-cccccccccccceeeeecccc--ccccccccccc
Confidence            6999999999999999999987653222 2234444444444544 677899999999876432221  12222222333


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      +..+|++++++++..+....+...+..+... +.    |+++++||+|...
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~~----pviiv~NK~Dl~~  123 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLR  123 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHH
T ss_pred             cccCcEEEEeecccccccccccccccccccc-cc----cccccchhhhhhh
Confidence            5677999999999878888888777777654 32    8999999999764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.55  E-value=2.4e-14  Score=111.62  Aligned_cols=116  Identities=18%  Similarity=0.281  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccc-----CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA-----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (285)
                      .+|+++|++++|||||+|+|++........     ...+.+.........+ .+..++++|+||..+           +.
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~~-----------~~   73 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD-----------LI   73 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------HH
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCccccccccccccc-----------cc
Confidence            689999999999999999999755321111     1123344444445555 678899999999542           22


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .....++..+|++++|+++..+....++..+..+... +.    |+++++||+|....
T Consensus        74 ~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-~~----p~iiv~NKiD~~~~  126 (179)
T d1wb1a4          74 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-NI----PIIVVITKSDNAGT  126 (179)
T ss_dssp             HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CBCEEEECTTSSCH
T ss_pred             cchhhhhhhccccccccccccccchhhhhhhhhhhhc-CC----cceeccccccccCH
Confidence            2233446678999999999888888887777666553 32    89999999998865

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.55  E-value=1.2e-13  Score=111.11  Aligned_cols=120  Identities=14%  Similarity=0.147  Sum_probs=84.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c-----------------cCCCCcceeEEEEEEEee
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R-----------------ASSSGVTSTCEMQRTVLK   66 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~-----------------~~~~~~t~~~~~~~~~~~   66 (285)
                      +..||+++|+..+|||||++.|+.......              +                 ....+.+.........+ 
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-   86 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-   86 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec-
Confidence            457999999999999999999963221100              0                 01124455544555555 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (285)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk  146 (285)
                      .++.++++||||+.++       ...+.+.    ...+|++++|+|+..++.+..+..+..+... |-+   ++++++||
T Consensus        87 ~~~~~~iiD~PGH~df-------v~~~~~g----~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv~---~iiv~vNK  151 (222)
T d1zunb3          87 AKRKFIIADTPGHEQY-------TRNMATG----ASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAINK  151 (222)
T ss_dssp             SSEEEEEEECCCSGGG-------HHHHHHH----HTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEEC
T ss_pred             cceEEEEEeccchhhh-------hhhhccc----cccCceEEEEeccccCcccchHHHHHHHHHc-CCC---EEEEEEEc
Confidence            6788999999998765       2333333    4566999999999889999998888777664 533   78999999


Q ss_pred             CCCCCCC
Q 023214          147 GDELEDN  153 (285)
Q Consensus       147 ~D~~~~~  153 (285)
                      +|....+
T Consensus       152 ~D~~~~~  158 (222)
T d1zunb3         152 MDLNGFD  158 (222)
T ss_dssp             TTTTTSC
T ss_pred             ccccccc
Confidence            9987654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1.3e-15  Score=116.58  Aligned_cols=120  Identities=22%  Similarity=0.285  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~   97 (285)
                      .+|+|+|++|+|||||+|+|+|........ ..+.+.......... .+..+.++||||+.......  .......... 
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~-   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE-   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeec-cccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH-
Confidence            489999999999999999999876432222 223344444444555 67889999999986432211  1111222222 


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                         +..+|++++|+|++++....+......+    ...   ++++++||.|....
T Consensus        78 ---~~~ad~ii~v~d~~~~~~~~~~~~~~~~----~~~---~~i~~~~k~d~~~~  122 (160)
T d1xzpa2          78 ---IEKADIVLFVLDASSPLDEEDRKILERI----KNK---RYLVVINKVDVVEK  122 (160)
T ss_dssp             ---HHHCSEEEEEEETTSCCCHHHHHHHHHH----TTS---SEEEEEEECSSCCC
T ss_pred             ---HHhCCEEEEEEeCCCCcchhhhhhhhhc----ccc---cceeeeeeccccch
Confidence               3456999999999878887766554433    222   88999999998865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.53  E-value=8.5e-14  Score=106.81  Aligned_cols=114  Identities=12%  Similarity=0.060  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.|.+.... .    .++|.......... .+..+.++||||...           +......
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~~~   65 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGEDVD-T----ISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYWRN   65 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCCS-S----CCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCC-c----ccceEeeeeeeccc-cccceeeeecCcchh-----------hhhHHHh
Confidence            79999999999999999999987542 1    23444444555555 788999999999532           2223345


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHH-HHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEE-AALH-SLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~-~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..++++++|+|..+..+..+. ..+. .+......  ..|++||.||.|....
T Consensus        66 ~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~  118 (165)
T d1ksha_          66 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLPGA  118 (165)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC
T ss_pred             hhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccC--CCceEEEEeccccccc
Confidence            67889999999998755444332 2222 22211112  2499999999998644

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=7.1e-14  Score=110.33  Aligned_cols=118  Identities=19%  Similarity=0.211  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+|+|+.|+|||||++.+++...........+.+..  ....... ....+.++||||...+.....           
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~-----------   73 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK--IKTVELDGKTVKLQIWDTAGQERFRTITS-----------   73 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE--EEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEE--EEEEEEeeEEEEEEEEECCCchhhHHHHH-----------
Confidence            68999999999999999999866532221122222222  2223331 234688999999876543322           


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|++++.+.... .++..+........  |++++.||.|....
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~D~~~~  126 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV--LKLLVGNKCDLKDK  126 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECTTCTTT
T ss_pred             HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCc--eEEEEEeccccccc
Confidence            346789999999999755444443 33444444434333  89999999997754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.9e-14  Score=111.12  Aligned_cols=117  Identities=11%  Similarity=0.102  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|++|+|||||++.+++...........+  ........... ....+.++||||...+           .....
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~wDt~G~e~~-----------~~~~~   72 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTIYRNDKRIKLQIWDTAGQERY-----------RTITT   72 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccc--cceeeEEEEeecceEEEEEEECCCchhh-----------HHHHH
Confidence            6899999999999999999987653322222222  22222333331 1346889999996432           12233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|+.++-+... ..++..+.......  .|++++.||.|...
T Consensus        73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~  124 (169)
T d3raba_          73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMED  124 (169)
T ss_dssp             TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSC--CEEEEEEECTTCGG
T ss_pred             HHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCc--ceEEEEEeeccccc
Confidence            46788999999999874433322 23344444443333  38889999999654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.52  E-value=1.2e-14  Score=113.92  Aligned_cols=127  Identities=17%  Similarity=0.144  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|+|+|++|+|||||+|+|+|......  ...+.|.........+..+..++++||||+.............+...+. 
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~-   78 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE-   78 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcee--cCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH-
Confidence            3699999999999999999998775322  3345566555666666457789999999974322222222333333332 


Q ss_pred             ccCCccEEEEEEeCC--CCCCHHHHH-HHHHHHHHhCcc-ccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVR--SRFSQEEEA-ALHSLQTLFGKK-IFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~--~~~~~~~~~-~l~~~~~~~~~~-~~~~~iil~nk~D~~~~  152 (285)
                         .++.++++++..  ......+.. ........+... ...|+++|+||+|....
T Consensus        79 ---~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~  132 (185)
T d1lnza2          79 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA  132 (185)
T ss_dssp             ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             ---HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH
Confidence               346677666653  233333322 222223332221 22489999999998754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1e-13  Score=112.62  Aligned_cols=120  Identities=21%  Similarity=0.259  Sum_probs=84.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCccc-------------ccc-------------cCCCCcceeEEEEEEEeeCCce
Q 023214           20 RTVVLVGRTGNGKSATGNSIL---GRRAF-------------KSR-------------ASSSGVTSTCEMQRTVLKDGQV   70 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~---g~~~~-------------~~~-------------~~~~~~t~~~~~~~~~~~~~~~   70 (285)
                      .+|+++|+.++|||||+..|+   |....             ..+             ....++|+...+..+.+ .+++
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~   85 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQ   85 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CCEE
Confidence            699999999999999999986   21100             000             01247888888888888 7899


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214           71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVV  143 (285)
Q Consensus        71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~iil  143 (285)
                      ++++||||+.+|.       ..+    ......+|++++|+++...       ..+..+..+..+..+ |-+   ++|++
T Consensus        86 i~iiDtPGH~df~-------~~~----~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~-gv~---~iiv~  150 (239)
T d1f60a3          86 VTVIDAPGHRDFI-------KNM----ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-GVR---QLIVA  150 (239)
T ss_dssp             EEEEECCCCTTHH-------HHH----HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-TCC---EEEEE
T ss_pred             EEEEECCCcHHHH-------HHH----HHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc-CCC---eEEEE
Confidence            9999999998752       222    2345678999999998533       234455556555543 543   78899


Q ss_pred             EeCCCCCCCChh
Q 023214          144 FTGGDELEDNDE  155 (285)
Q Consensus       144 ~nk~D~~~~~~~  155 (285)
                      +||+|....+..
T Consensus       151 iNKmD~~~~d~~  162 (239)
T d1f60a3         151 VNKMDSVKWDES  162 (239)
T ss_dssp             EECGGGGTTCHH
T ss_pred             EECCCCCCCCHH
Confidence            999998865433

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.7e-14  Score=110.10  Aligned_cols=116  Identities=22%  Similarity=0.260  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++...........+.+  ........ .+  ..+.++||||..++.....          
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~----------   71 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE--FATRSIQV-DGKTIKAQIWDTAGQERYRRITS----------   71 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCE--EEEEEEEE-TTEEEEEEEEECSSGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccce--eeeEEEEE-CCEEEEEEecccCCcHHHHHHHH----------
Confidence            689999999999999999998766433322222222  22333333 33  4688999999766544332          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ..+..+|++++|+|.+++-+... ..++..+....++..  |+++|.||.|...
T Consensus        72 -~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~--piilvgnK~Dl~~  123 (175)
T d2f9la1          72 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLVGNKSDLRH  123 (175)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGG
T ss_pred             -HHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCC--cEEEEEeeecccc
Confidence             22567899999999975543333 345666666655444  9999999999764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.50  E-value=1.6e-13  Score=105.16  Aligned_cols=117  Identities=18%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +.+|+++|++|+|||||++.|.+..... ..   .+|....+..... .+..+.++|+||...+           .....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~-~~---~~T~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNE-DM---IPTVGFNMRKITK-GNVTIKLWDIGGQPRF-----------RSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCC-SC---CCCCSEEEEEEEE-TTEEEEEEEECCSHHH-----------HTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCC-cc---cccceeeeeeeee-eeEEEEEeeccccccc-----------ccccc
Confidence            4799999999999999999998765422 22   2344444555555 6788999999995421           11122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|+.++.+-.. ...+..+.... .....|++++.||.|....
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGA  119 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTC
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhhh-cccCCcEEEEEeccccchh
Confidence            34678899999999975544332 22222222211 1122489999999997654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.1e-14  Score=107.13  Aligned_cols=115  Identities=22%  Similarity=0.081  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+.+......  .+.....  ....+.. ++  ..+.++||||...+...           .
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~--~~~~~~~--~~~~i~~-~~~~~~l~i~D~~g~e~~~~~-----------~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHT--YDRSIVV-DGEEASLMVYDIWEQDGGRWL-----------P   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEE--EEEEEEE-TTEEEEEEEEECC-------C-----------H
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc--CCeeeee--ecceeec-cccccceeeeeccccccccee-----------c
Confidence            5899999999999999999998653211  1111111  1122333 33  45889999997654221           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++.++|++++|+|++++-+.... .++..+....+ ....|+++|.||+|+..
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~  119 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVR  119 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGG
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhh
Confidence            2346788999999999866554443 34444444432 22348999999999764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.5e-14  Score=108.63  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|+.|+|||||++.+++...... . ..+.+.......... .+  ..+.++||||...+           ....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~-~-~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPG-Q-GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERF-----------RSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTT-C-CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------HHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc-c-cccccceEEEEEEEE-CCEEEEEEEEECCCchhh-----------HHHH
Confidence            6999999999999999999997653222 2 222333333344444 33  34788999995431           2233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++.++|++++|+|..++.+... ..++..+........  |++++.||+|...
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~ilvgnK~D~~~  124 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV--ITVLVGNKIDLAE  124 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGG
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccc--cEEEEEeeccccc
Confidence            456789999999999875544333 344555555433333  8999999999764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.7e-14  Score=108.03  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|++|+|||||++.+++........  .+.+.......... .+  ..+.++||||...+..           ..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~-----------~~   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRA-----------VT   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCT--TSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCH-----------HH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc--ccccccceeEEEEE-CCEEEEEEEeccCCchhHHH-----------HH
Confidence            689999999999999999999766432222  22222222333333 33  3688999999764321           11


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|+.++-+-.. ..++..+........  |++++.||.|...
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~  123 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIILIGNKADLEA  123 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGG
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccc--eEEEEcccccchh
Confidence            122457799999999975433322 345555655544433  8999999999753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.48  E-value=2.1e-13  Score=105.66  Aligned_cols=118  Identities=16%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ....+|+++|++|+|||||+|.|.+...... .    ++.........+ .+..+.++|+||...+           ...
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~----~~~~~~~~~i~~-~~~~~~i~d~~g~~~~-----------~~~   76 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-T----PTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY   76 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-E----EETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-e----eeeeeeEEEecc-CCeeEeEeeccccccc-----------hhH
Confidence            3448999999999999999999988764221 1    111222334444 6778999999996542           112


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....+..+|++++|+|+++..+..+. ..+..+..... ....|++++.||.|....
T Consensus        77 ~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~  132 (176)
T d1fzqa_          77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA  132 (176)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             HHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc
Confidence            23446788999999999766555442 22222222111 122489999999998765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=8.1e-14  Score=106.92  Aligned_cols=115  Identities=23%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|++|+|||||++.+++...........+....  ...... .  ...+.++||||.........          
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~--~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~----------   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL--ERQIQV-NDEDVRLMLWDTAGQEEFDAITK----------   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEE--EEEEEE-TTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccc--eeeeee-cCceeeeeeeccCCccchhhhhh----------
Confidence            68999999999999999999865432221111222222  122222 2  34588999999876544332          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                       ..+..+|++++|+|+.++-+... ..++..+....+..   |+++|.||+|...
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~iilVgnK~Dl~~  120 (164)
T d1z2aa1          70 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDI---PTALVQNKIDLLD  120 (164)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSC---CEEEEEECGGGGG
T ss_pred             -hhhccCceEEEEEeccchhhhhhcccccccccccCCCc---eEEEeeccCCccc
Confidence             22567899999999975544433 24555565554433   8999999999764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.47  E-value=3.9e-13  Score=104.81  Aligned_cols=120  Identities=16%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (285)
                      ......+|+++|++|+|||||++.|.+.......     +|.......... .+..+.++|+||........        
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~--------   78 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVETLSY-KNLKLNVWDLGGQTSIRPYW--------   78 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEEEEE-TTEEEEEEEEC----CCTTG--------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-----cccceEEEEEee-CCEEEEEEecccccccchhH--------
Confidence            3444589999999999999999999877643221     122223344445 67889999999987654322        


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                         ..++..+|++++|+|..++.+..+. .++..+... ......|++|+.||.|....
T Consensus        79 ---~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~-~~~~~~piliv~NK~Dl~~~  133 (182)
T d1moza_          79 ---RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE-EELQDAALLVFANKQDQPGA  133 (182)
T ss_dssp             ---GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS-STTSSCEEEEEEECTTSTTC
T ss_pred             ---HhhhccceeEEEEeeecccccchhHHHHHHHHHHh-hccCCcceEEEEEeeccccc
Confidence               2347789999999999767666543 333322211 11122499999999998654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.7e-14  Score=106.69  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|..|+|||||++.+++........  .+............. ....+.++||||...+..           ...
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS-----------LIP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGG-----------GHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccc--cceeeeccceeeccCCCceeeeecccCCcchhcc-----------chH
Confidence            389999999999999999999766432212  222222222233331 134588999999765321           112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+..+|++++|+|..++.+... ..++..+........  |+++|.||.|...
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~--~iilvgnK~Dl~~  119 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLAD  119 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGG
T ss_pred             HHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCc--eEEEEecccchhh
Confidence            33678899999999975655444 455555555554444  8999999999764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=106.79  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+|+|++|+|||||++.+++...++......+.+..  ....... ....+.++|++|.........           
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-----------   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMVNIDGKQIKLQIWDTAGQESFRSITR-----------   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEE--EEEEEETTEEEEEEEECCTTGGGTSCCCH-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccc--eeeeeeeeeEEEEEeecccCccchhhHHH-----------
Confidence            58999999999999999999876643322222222222  2222221 235689999999876543332           


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+..+|++++|+|+.++-+-.. ..++..+....+.+.  |+++|.||+|...
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~  122 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLES  122 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGG
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCC--eEEEEecCCchhh
Confidence            22567899999999975544433 355556666554444  8999999999653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-13  Score=107.27  Aligned_cols=119  Identities=17%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .||+++|..|+|||||++.+++.........  ..+........... ....+.++||||.........           
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-----------   74 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAA--TIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTP-----------   74 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHH-----------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCcccc--ceeecceeEEEEEeccccEEEEEECCCchhhHHHHH-----------
Confidence            6899999999999999999997664322222  22333233333331 134589999999865432211           


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+..+|++++|+|+.++-+... ..++..+... ......+++++.||.|....
T Consensus        75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~~  128 (177)
T d1x3sa1          75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKENR  128 (177)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSSC
T ss_pred             HHHhcCCEEEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeeccccccc
Confidence            23568899999999874433222 2223333221 22333588899999997654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-13  Score=106.45  Aligned_cols=115  Identities=19%  Similarity=0.141  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|++|+|||||++.+++...+ ....+   |...... .... .....+.++||||...+....           
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~-~~~~~---t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~-----------   67 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFP-EVYVP---TVFENYVADIEVDGKQVELALWDTAGLEDYDRLR-----------   67 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCC---CSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTG-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-CCcCC---ceeeeccccccccccceeeeccccCccchhcccc-----------
Confidence            68999999999999999999876532 22222   2221111 1222 123458999999987543322           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++.++|++++|+|++++-|-..  ..+...+... .+..  |++|+.||+|....
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~--piilvgnK~Dl~~~  121 (177)
T d1kmqa_          68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNV--PIILVGNKKDLRND  121 (177)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTS--CEEEEEECGGGTTC
T ss_pred             hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCC--ceEEeeecccccch
Confidence            345788999999999975544332  2334444443 4444  99999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=106.33  Aligned_cols=118  Identities=23%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ...+|+|+|..|+|||||++.+++.. +.....+....  ........ .+  ..+.++||+|...+......       
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~-f~~~~~~t~~~--~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~-------   73 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIED--SYTKICSV-DGIPARLDILDTAGQEEFGAMREQ-------   73 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCE--EEEEEEEE-TTEEEEEEEEECCCTTTTSCCHHH-------
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCC-CCccccccccc--ceeeEecc-CCeeeeeeccccccccccccccch-------
Confidence            34799999999999999999998655 33332222211  11223333 33  45778999998876443321       


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                          .+..+|++++|+|.+++-+.... .++..+....+. ...|+++|.||+|+..
T Consensus        74 ----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~  125 (173)
T d2fn4a1          74 ----YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLES  125 (173)
T ss_dssp             ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGG
T ss_pred             ----hhccceeeeeecccccccccchhhhhhHHHHHHhcc-CCCceEEEEEeechhh
Confidence                23456999999999755444432 444444443321 1238999999999753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=5.9e-14  Score=108.72  Aligned_cols=117  Identities=15%  Similarity=0.178  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|..|+|||||++.+++...... . ..+.+.......... ++  ..+.++||||...+...           .
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~-----------~   72 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNST-F-ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTI-----------T   72 (173)
T ss_dssp             EEEEEECCCCC----------------C-H-HHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc-c-CccccceEEEEEEEE-CCEEEEEEEEECCCchhhHHH-----------H
Confidence            6899999999999999999997653221 1 112233333344444 33  45778999997654322           2


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++.++|++++|+|++++.+.... .++..+........  |++++.||.|....
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~~k~D~~~~  126 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV--EKMILGNKCDVNDK  126 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEEC--CCSC
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCc--eEEEEEecccchhh
Confidence            2457889999999999765554443 33444544434333  89999999998754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.7e-13  Score=104.28  Aligned_cols=117  Identities=16%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+|+|.+|+|||||++.+++...........+.  .......... ....+.++||+|......           ...
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~--~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~   70 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA--SFLTKKLNIGGKRVNLAIWDTAGQERFHA-----------LGP   70 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSC--EEEEEEEESSSCEEEEEEEECCCC------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccc--chheeeeccCCccceeeeeccCCcceecc-----------cch
Confidence            68999999999999999999876532221111222  2222222321 135688999999765321           223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..+.++|++++|+|++++-|-.. ..++..+........  |++++.||.|...
T Consensus        71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~--~~ilvgnK~Dl~~  122 (167)
T d1z08a1          71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEK  122 (167)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGG
T ss_pred             hhccCCceeEEEEeCCchhHHHhhhhhhhhccccccccc--ceeeecccccccc
Confidence            45788999999999975544443 344444544433333  8888999999764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.6e-13  Score=102.39  Aligned_cols=115  Identities=20%  Similarity=0.183  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+|+|+.|+|||||++.+++... .....   +|....+. .... ++  ..+.++||||...+.....         
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f-~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~~~~~~---------   70 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQF-VDSYD---PTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQ---------   70 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSCCC---SSCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCCG---------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-CcccC---cceecccceEEec-CcEEEEeeecccccccccccccc---------
Confidence            7999999999999999999986553 22211   22222221 2233 33  4578899999887654332         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                        ..+..+|++++|+|++++-+.... .++..+....+. ...|++++.||.|...
T Consensus        71 --~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~  123 (167)
T d1xtqa1          71 --TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHM  123 (167)
T ss_dssp             --GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCS-SCCCEEEEEECTTCGG
T ss_pred             --hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccc-cccceeeecccccccc
Confidence              346789999999999755444442 344455554443 2238999999999754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-13  Score=106.31  Aligned_cols=117  Identities=16%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+|+|..|+|||||++.+++... .....+. ............. ....+.++||||...+           .....
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~-~~~~~~t-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----------~~~~~   72 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHT-IGVEFGSKIINVGGKYVKLQIWDTAGQERF-----------RSVTR   72 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCC-SEEEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-Ccccccc-cccceeeEEEEecCcceeEEEEECCCchhh-----------hhhHH
Confidence            6899999999999999999986553 2222211 1111112222221 1345889999996532           11233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|.+++-+... ..++..+.......  .|++++.||+|...
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~  124 (174)
T d2bmea1          73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDA  124 (174)
T ss_dssp             TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             HHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccc
Confidence            55788999999999874433332 23444444444433  39999999999653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=3e-13  Score=103.99  Aligned_cols=116  Identities=17%  Similarity=0.127  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|.+|+|||||++.+.+..... ...+ ............. .  ...+.++||+|...+....           
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~-~~~~-t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~-----------   70 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVEDSFDP-NINP-TIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALA-----------   70 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCT-TCCC-CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGT-----------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCc-cccc-ccccccccccccc-cccccceeeeecCCchhhhHHH-----------
Confidence            689999999999999999998765322 2211 1111111122222 2  2346799999976542211           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|+.++-+... ..++..+.......  .|+++|.||+|...
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~  123 (167)
T d1z0ja1          71 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTD  123 (167)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGG
T ss_pred             HHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhcc
Confidence            123677899999999875544333 23344444444433  48999999999753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.1e-14  Score=107.34  Aligned_cols=115  Identities=20%  Similarity=0.146  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-C--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|++|+|||||++.+++.... ...   .+|....+...... .  ...+.++||||...+...           
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~-~~~---~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-----------   68 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFE-KKY---VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL-----------   68 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC------CCE---EEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-ccc---ccceecccccccccccccccccccccccccccccee-----------
Confidence            68999999999999999999876532 211   12222222222221 2  346899999996543222           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....+.++|++++|+|++++-|... ..++..+..... .  .|+++|.||.|....
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~  122 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR  122 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-S--CCEEEEEECCCCSCS
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhccC-C--Cceeeecchhhhhhh
Confidence            2245778999999999976644333 344444444433 3  399999999997644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2.6e-13  Score=107.96  Aligned_cols=117  Identities=10%  Similarity=0.143  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+|+|++|+|||||+|.|++....+      ++|.........+ .+..+.++||||.....   .....    .+..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~---~~~~~----~~~~   69 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADY-DGSGVTLVDFPGHVKLR---YKLSD----YLKT   69 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSSCEEETTG-GGSSCEEEECCCCGGGT---HHHHH----HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecceEEEEEe-CCeEEEEEecccccchh---hHHHH----HHHH
Confidence            799999999999999999999876422      2222222233333 57779999999976421   22222    2223


Q ss_pred             ccCCccEEEEEEeCCC-CCC-HHHHHHH----HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRS-RFS-QEEEAAL----HSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~-~~~-~~~~~~l----~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .....+.+++++++.. ..+ .....++    ..+.......  .|+++++||+|....
T Consensus        70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA  126 (209)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred             HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeeccccc
Confidence            3445578888888642 222 2222222    2333333333  389999999998765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=3.4e-13  Score=103.52  Aligned_cols=117  Identities=14%  Similarity=0.189  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|.+|+|||||++.+++...... .. .+.+.......+.. .+  ..+.++||||...+.....          
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~-~~-~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~~~----------   69 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPS-FI-TTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITT----------   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc-cC-CccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHHHH----------
Confidence            6899999999999999999997654322 11 12222233333444 33  3477899999765433222          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       .++..+|++++|+|..++-+...... +..+......  ..+++++.+|.|....
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~  122 (166)
T d1g16a_          70 -AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR  122 (166)
T ss_dssp             -HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC
T ss_pred             -HHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhhhh
Confidence             23678899999999975544333332 2333333222  3378888999997654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=3.2e-13  Score=104.51  Aligned_cols=120  Identities=15%  Similarity=0.121  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|++|+|||||++.+++...........+.+..  ........  ...+.++||||......           .
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~   68 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFL--TKEVTVDGDKVATMQVWDTAGQERFQS-----------L   68 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCE--EEEECCSSSCCEEEEEECCC-------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCccccccee--eeeeeecCcccccceeeccCCchhhhh-----------H
Confidence            379999999999999999999876643222222222221  11111111  24578999999654321           2


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~  151 (285)
                      ....+..++++++|+|+.++.+... ..++..+......  ....|++++.||+|...
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~  126 (175)
T d1ky3a_          69 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  126 (175)
T ss_dssp             --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             HHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhh
Confidence            2345778999999999975554433 3445555544332  12348999999999754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.42  E-value=1.4e-12  Score=100.77  Aligned_cols=115  Identities=13%  Similarity=0.107  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.+++......     .+|.......... ....+.++|+||....           ......
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~~~~   75 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPLWRH   75 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCCCEEE-----EEETTEEEEEEEE-TTEEEEEEEESCCGGG-----------HHHHGG
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCc-----cceeeeeEEEeec-cceeeEEecCCCcchh-----------hhHHHh
Confidence            8999999999999999999987654322     1222333344444 6778999999997642           123445


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..++++++|+|.++.-+... ...+...... ......|++++.||.|....
T Consensus        76 ~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~-~~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          76 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             GTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTC
T ss_pred             hhcccceEEEEEecccchhHHHHHHHHHHHhhh-cccccceeeeeeeccccccc
Confidence            6889999999999974434332 2223222211 01122499999999998653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.7e-13  Score=103.78  Aligned_cols=117  Identities=19%  Similarity=0.171  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+++|..|+|||||++.+++.... ....+ .............. ....+.++||||...+...           ..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~-~~~~~-t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~   73 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFH-EFQES-TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL-----------AP   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCC-CSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG-----------HH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-ccccc-ccccccccceeeccceEEEEEeccCCCchhhhhh-----------HH
Confidence            68999999999999999999966532 22222 12222222222221 1345889999997653211           12


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++..+|++++|+|..++-+... ..++..+.....+..  |++++.||.|...
T Consensus        74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~  125 (170)
T d1r2qa_          74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLAN  125 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGG
T ss_pred             HHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCc--eEEeecccccccc
Confidence            23678899999999875544333 344455555555444  8999999999653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.4e-13  Score=103.54  Aligned_cols=116  Identities=19%  Similarity=0.184  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+|+|..|+|||||++.++... |.....+...  ......... .+  ..+.++||||...+.....         
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~~-f~~~~~~Ti~--~~~~~~~~~-~~~~~~l~i~D~~g~e~~~~~~~---------   75 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVF--DHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRP---------   75 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSC--CCEEEEEES-SSCEEEEEEECCCCSSSSTTTGG---------
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhCC-CCCcCCCcee--eeeeEEEee-CCceEEeecccccccchhhhhhh---------
Confidence            3799999999999999999998654 3333222111  111122222 23  4578999999876543222         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                        ..+..+|++++|+|++++-|-..  ..+...+... .+..  |+++|.||.|....
T Consensus        76 --~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~--~~ilvgnK~Dl~~~  128 (185)
T d2atxa1          76 --LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNV--PFLLIGTQIDLRDD  128 (185)
T ss_dssp             --GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTC--CEEEEEECTTSTTC
T ss_pred             --hcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCC--CeeEeeeccccccc
Confidence              35788999999999975554433  2333444443 4333  89999999998765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.41  E-value=3.4e-12  Score=100.53  Aligned_cols=119  Identities=17%  Similarity=0.264  Sum_probs=75.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeEEEEEEEee----------------------CCceEEEEe
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLK----------------------DGQVVNVID   75 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~----------------------~~~~~~liD   75 (285)
                      ..+|+++|+.++|||||+|.|+|....... ....+.|....+....+.                      ....++++|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            468999999999999999999985421110 011222322222111110                      123489999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      |||+.+           +..........+|++++|+++..+. ....+..+..+... +.+   ++++++||+|..+.
T Consensus        85 tPGh~~-----------f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~---~iiv~inK~D~~d~  147 (195)
T d1kk1a3          85 APGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK  147 (195)
T ss_dssp             CSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH
T ss_pred             cchhhh-----------hhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCc---cceeeeecccchhh
Confidence            999532           2333334456679999999997664 55566666666654 443   68889999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.3e-12  Score=99.24  Aligned_cols=118  Identities=19%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|+.|+|||||++.+++.... ................... .+  ..+.++||||......           ..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~-----------~~   73 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFL-AGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRS-----------VT   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-cccccceeeeeeEEEEEEe-cCcEEEEEEEECCCchhhHH-----------HH
Confidence            68999999999999999998865532 2222222222322333333 34  3578999999765321           22


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|..++-+... ..++..+.......  .|++++.||.|....
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~  127 (170)
T d2g6ba1          74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE  127 (170)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC
T ss_pred             HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhc
Confidence            244677899999999874443333 23333343443333  388999999997754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.8e-13  Score=102.10  Aligned_cols=115  Identities=23%  Similarity=0.166  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|||++|+|||||++.+++.. |+....   +|....+.......+  ..+.++||||...+.    .    .    
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~-f~~~~~---pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~----~----   66 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKR-FIWEYD---PTLESTYRHQATIDDEVVSMEILDTAGQEDTI----Q----R----   66 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC-CCSCCC---TTCCEEEEEEEEETTEEEEEEEEECCCCCCCH----H----H----
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC-CCCccC---CceeccccccccccccceEEEEeecccccccc----c----c----
Confidence            799999999999999999999755 322222   233333332222234  458899999976431    1    1    


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+.++|++++|+|++++-+......+ ........ ....|+++|.||.|+..
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~  120 (168)
T d2atva1          67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH  120 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred             hhhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhh
Confidence            1124457999999999766554443332 23333222 22349999999999753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.9e-13  Score=102.74  Aligned_cols=116  Identities=19%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+|+|++|+|||||++.+++.... ....+   |....+ ..... .  ...+.++|++|.....    .       
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~~---t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~----~-------   66 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFI-EKYDP---TIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA----S-------   66 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCT---TCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----H-------
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCC-CccCC---ceeeeeeeeeec-CcceEeeccccCCCccccc----c-------
Confidence            379999999999999999999976532 22221   111111 12222 3  3458889999976431    1       


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .....+..+|++++|+|++++-+-... .++..+..... ....|+++|.||+|+..
T Consensus        67 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~  122 (167)
T d1kaoa_          67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES  122 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred             chHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhh
Confidence            111224567999999999755544442 33333433322 22348999999999754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=7.7e-13  Score=101.92  Aligned_cols=117  Identities=25%  Similarity=0.215  Sum_probs=75.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+++|..|+|||||++.+++... .....+   |....+ ..... .  ...+.++|++|.........        
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~-~~~~~~---t~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~--------   70 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIF-VPDYDP---TIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMRE--------   70 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSC-CTTCCT---TCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSSHH--------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCC-CcccCc---ceeecccccccc-ccccccccccccccccccccchh--------
Confidence            47999999999999999999987653 222222   111111 12223 3  34588999999876533221        


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                         .++.++|++++|+|++++-+... ..++..+....+. ...|++++.||+|....
T Consensus        71 ---~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~  124 (169)
T d1x1ra1          71 ---QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHL  124 (169)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTT
T ss_pred             ---hhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhh
Confidence               22456799999999975544443 3455555555432 22489999999997654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1e-12  Score=111.64  Aligned_cols=116  Identities=23%  Similarity=0.326  Sum_probs=81.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeEEEEEEEee---------------CCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------------DGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~~   69 (285)
                      .++|+|+|+.++|||||+.+|+........              ....+.|......+..+.               .+.
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            457999999999999999999722111000              011345555555554431               123


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCC
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~  149 (285)
                      .++|+||||+.++.       .+....+    +.+|++++|+|+.+++.......++.+... +  .  |+++++||+|.
T Consensus        97 ~inliDtPGh~dF~-------~ev~~al----~~~D~allVVda~eGv~~qT~~~~~~a~~~-~--~--p~i~viNKiDr  160 (341)
T d1n0ua2          97 LINLIDSPGHVDFS-------SEVTAAL----RVTDGALVVVDTIEGVCVQTETVLRQALGE-R--I--KPVVVINKVDR  160 (341)
T ss_dssp             EEEEECCCCCCSSC-------HHHHHHH----HTCSEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--EEEEEEECHHH
T ss_pred             EEEEEcCCCcHHHH-------HHHHHHH----hhcCceEEEEecccCcchhHHHHHHHHHHc-C--C--CeEEEEECccc
Confidence            59999999999874       2333333    445999999999889999999999887764 3  2  89999999997


Q ss_pred             C
Q 023214          150 L  150 (285)
Q Consensus       150 ~  150 (285)
                      .
T Consensus       161 ~  161 (341)
T d1n0ua2         161 A  161 (341)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.1e-12  Score=102.70  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ++|+|+|++|+|||||+|.|++...... .  .+.+............+..+.++|+||...       ....   ....
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~---~~~~   67 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT-Q--TSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQ---LLDR   67 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCB-C--CCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHHH---HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc-c--CCeeEEEEEEEEeeeeeeeeeeeecccccc-------ccch---hhhh
Confidence            3799999999999999999998664322 1  122222222222222356799999999642       1111   2223


Q ss_pred             ccCCccEEEEEEeCCCCCCHH--HHHHH-HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQE--EEAAL-HSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~--~~~~l-~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..++++++|+|+.+..+..  ....+ ..+..........|++|+.||.|+...
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            356779999999986332211  11222 222222111222389999999998754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.3e-13  Score=102.54  Aligned_cols=117  Identities=23%  Similarity=0.166  Sum_probs=68.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|.+|+|||||++.+++... .....+...  ......... .+  ..+.++|+||..++...           .
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~~t~~--~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~-----------~   70 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIE--DSYTKQCVI-DDRAARLDILDTAGQEEFGAM-----------R   70 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC-CSSCCTTCC--EEEEEEEEE-TTEEEEEEEEECC----CCHH-----------H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CcccCcccc--cceeeeeee-ccccccccccccccccccccc-----------c
Confidence            6999999999999999999987553 232222111  111222223 33  45889999998764211           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|..++-+.... .++..+...... ...|++++.||.|....
T Consensus        71 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~  125 (171)
T d2erya1          71 EQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQ  125 (171)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTS
T ss_pred             cccccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhh
Confidence            1223456999999998755443332 334344443332 22388999999997543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.1e-13  Score=101.86  Aligned_cols=117  Identities=22%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|.+|+|||||++.+++... .....   +|....+.......+  ..+.++||+|...+..           ..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f-~~~~~---~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-----------~~   67 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTF-RESYI---PTVEDTYRQVISCDKSICTLQITDTTGSHQFPA-----------MQ   67 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCC-CSSCC---CCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH-----------HH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CCccC---cceeeccccceeeccccceeccccccccccccc-----------cc
Confidence            6999999999999999999997653 22221   222222222222134  3477899999875411           11


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ..++..+|++++|+|++++-+... ..++..+....+.....|+++|.||.|...
T Consensus        68 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  122 (171)
T d2erxa1          68 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  122 (171)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             cccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc
Confidence            122456799999999975444333 344445554434333348999999999753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=8.9e-13  Score=100.95  Aligned_cols=121  Identities=16%  Similarity=0.081  Sum_probs=74.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|..|+|||||++.+++...+.......+............ ....+.++|++|.......          ...
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~   70 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQERFRKS----------MVQ   70 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHHHHTT----------THH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchhhccc----------cce
Confidence            36899999999999999999986654333222222222222222211 3456889999986421111          112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      .++.++|++++|+|++++-+-... .++..+...... ...|++||.||.|+..
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~  123 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRS  123 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGG
T ss_pred             eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchh
Confidence            336788999999999766554443 455555544321 2238999999999754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-13  Score=103.22  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|++|+|||||++.+++...+. ...+ ..................+.++|+||...+.        ..   ...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------~~---~~~   70 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDP-TIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------AM---RDQ   70 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-SCCC-CSEEEEEEEEEETTEEEEEEEEEECCCGGGH--------HH---HHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-ccCC-ccceeeccceeeeceeeeeeeeeccCccccc--------cc---hhh
Confidence            689999999999999999999766322 2111 1111111111111113458899999976431        11   112


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..++++++|+|.+++.+... ..++..+....+. ...|++++.||+|+...
T Consensus        71 ~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  123 (166)
T d1ctqa_          71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKCDLAAR  123 (166)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-SSCCEEEEEECTTCSCC
T ss_pred             hhhcccccceeecccccccHHHHHHHHHHHHHhcCC-CCCeEEEEecccccccc
Confidence            2456689999999975544443 3445555554332 12389999999997644

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.37  E-value=1.7e-12  Score=103.13  Aligned_cols=118  Identities=19%  Similarity=0.241  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcceeEEEE--EEEe-------------------------eCCceE
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQ--RTVL-------------------------KDGQVV   71 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~-~~~~t~~~~~~--~~~~-------------------------~~~~~~   71 (285)
                      .+|+++|+..+|||||++.|+|......... ....+......  ....                         ...+.+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   88 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI   88 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence            6999999999999999999998543111000 00000000000  0000                         012468


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      +++||||+.++           ......+...+|.+++|+++...+ ....+..+..+... +.+   |++|++||+|..
T Consensus        89 ~iiD~PGH~df-----------~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i~---~iIV~vNK~Dl~  153 (205)
T d2qn6a3          89 SFIDAPGHEVL-----------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVV  153 (205)
T ss_dssp             EEEECSCHHHH-----------HHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCC---CEEEEEECGGGS
T ss_pred             EEeccchHHHH-----------HhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CCc---eeeeccccCCCc
Confidence            99999996542           222334456789999999997776 56666666665553 543   789999999987


Q ss_pred             CC
Q 023214          151 ED  152 (285)
Q Consensus       151 ~~  152 (285)
                      ..
T Consensus       154 ~~  155 (205)
T d2qn6a3         154 SK  155 (205)
T ss_dssp             CH
T ss_pred             cc
Confidence            65

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1e-12  Score=102.50  Aligned_cols=119  Identities=14%  Similarity=0.130  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC-CCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|.+|+|||||++.+++.... ....+ .+.+..  ....... ....+.++||||.........          
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~-~~~~~t~~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~~----------   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFL--TKEVMVDDRLVTMQIWDTAGQERFQSLGV----------   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEE--EEEEESSSCEEEEEEEEECSSGGGSCSCC----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-CCcCCccceeee--eeeeeeCCceEEEEeeecCCccccccccc----------
Confidence            68999999999999999999976532 22211 122222  2222221 234688999999765433322          


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~~  152 (285)
                       ..+..+|++++++|..++-+... ..++..+......  ....|+++|.||+|....
T Consensus        70 -~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~  126 (184)
T d1vg8a_          70 -AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR  126 (184)
T ss_dssp             -GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred             -ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc
Confidence             33667899999999864433332 2344444444321  112389999999997543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.36  E-value=1.8e-12  Score=104.48  Aligned_cols=118  Identities=23%  Similarity=0.304  Sum_probs=73.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|+.++|||||+..|+......                             ......+.|.........+ .+.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~   81 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY   81 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CCc
Confidence            3699999999999999999886321100                             0011235666666677777 788


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCccccCeEEE
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .++++||||+.+|.       .++    ......+|++++|+|+.+....       ..+..+..+.. ++.+   ++|+
T Consensus        82 ~i~iiDtPGH~df~-------~~~----~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~~---~iIv  146 (224)
T d1jnya3          82 FFTIIDAPGHRDFV-------KNM----ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLIV  146 (224)
T ss_dssp             EEEECCCSSSTTHH-------HHH----HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCEE
T ss_pred             eeEEeeCCCcHHHH-------HHH----HHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCCC---ceEE
Confidence            99999999998752       222    2345667999999999755322       23333333333 3433   7889


Q ss_pred             EEeCCCCCCC
Q 023214          143 VFTGGDELED  152 (285)
Q Consensus       143 l~nk~D~~~~  152 (285)
                      ++||+|....
T Consensus       147 ~iNK~D~~~~  156 (224)
T d1jnya3         147 AVNKMDLTEP  156 (224)
T ss_dssp             EEECGGGSSS
T ss_pred             EEEcccCCCc
Confidence            9999998753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-12  Score=102.02  Aligned_cols=115  Identities=23%  Similarity=0.126  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+|+|++|+|||||++.+++... +....+   |....+ ..... .  ...+.++||||...+....          
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f-~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~----------   68 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVP---TVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLR----------   68 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC---CSEEEEEEEEEE-TTEEEEEEEEEECCSGGGTTTG----------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-CCCcCC---ceeeecceeEee-CCceeeeeccccccchhhhhhh----------
Confidence            6899999999999999999986653 222222   222222 22222 3  3458899999987543322          


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                       ...+..+|++++|+|++++-|-... .++...........  |++++.||.|+...
T Consensus        69 -~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~--~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          69 -PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDD  122 (191)
T ss_dssp             -GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTC--CEEEEEECGGGGGC
T ss_pred             -hhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCC--ceEEEecccccccc
Confidence             2457789999999999766544443 22333333333333  89999999997754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.36  E-value=1.2e-12  Score=100.71  Aligned_cols=116  Identities=22%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (285)
                      ..+|+|+|..|+|||||++.+++.. |.....+   |....+. .... ++  ..+.++|+||....    ..    +. 
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~-f~~~~~~---T~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~----~~----~~-   69 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDE-FVEDYEP---TKADSYRKKVVL-DGEEVQIDILDTAGQEDY----AA----IR-   69 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCT---TCCEEEEEEEEE-TTEEEEEEEEECCC---C----HH----HH-
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC-CCcccCC---cccccccccccc-ccccccccccccccccch----hh----hh-
Confidence            3699999999999999999988654 3232222   2222221 2223 33  45788999997653    11    11 


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                        ...+..+|++++|+|..++-+.... .++..+....+ ....|+++|.||+|...
T Consensus        70 --~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~  123 (168)
T d1u8za_          70 --DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED  123 (168)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred             --hhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEeccccccc
Confidence              1224456999999999755444432 34444544332 22238999999999653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.35  E-value=1.9e-12  Score=109.22  Aligned_cols=138  Identities=17%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-cceeEE---------------------------------------
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTCE---------------------------------------   59 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~t~~~~---------------------------------------   59 (285)
                      ++|+|||..++|||||+|+|+|....+++..+.+ +.+...                                       
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  104 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR  104 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHH
Confidence            6899999999999999999999987665543210 000110                                       


Q ss_pred             -----------------EEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHHhhccCCccE-EEEEEeCCCCCCH
Q 023214           60 -----------------MQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCIGMAKDGIHA-VLVVFSVRSRFSQ  119 (285)
Q Consensus        60 -----------------~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~v~~~~~~~~~  119 (285)
                                       ......+.-..+++|||||+......+.  .....+...+..+...+++ +++|+++...+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~  184 (306)
T d1jwyb_         105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN  184 (306)
T ss_dssp             HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred             HHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccc
Confidence                             1112221234689999999986432211  1122222333333445565 4555566434443


Q ss_pred             HHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214          120 EEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       120 ~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                      ..  .+.+++..-+  ...++++|+||+|..... .....++.
T Consensus       185 ~~--~~~~~~~~~~--~~~r~i~Vitk~D~~~~~-~~~~~~l~  222 (306)
T d1jwyb_         185 SD--ALQLAKEVDP--EGKRTIGVITKLDLMDKG-TDAMEVLT  222 (306)
T ss_dssp             CS--HHHHHHHHCS--SCSSEEEEEECTTSSCSS-CCCHHHHT
T ss_pred             cH--HHHHHHHhCc--CCCeEEEEEeccccccch-hHHHHHHh
Confidence            33  3344444422  234899999999988653 33334443

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.9e-12  Score=101.17  Aligned_cols=117  Identities=14%  Similarity=0.046  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------CCceEEEEeCCCCCCCCCCcHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF   88 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtpG~~~~~~~~~~   88 (285)
                      .+|+|+|++|+|||||++.+++...... .. .+.+.........+.           ....+.++||||..        
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~-~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e--------   75 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPK-FI-TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--------   75 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCE-EE-EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCc-cC-CcccceeeEEEEEEecccccccccccceEEeccccCCcch--------
Confidence            6899999999999999999997653222 11 111111111112111           12358899999943        


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC--ccccCeEEEEEeCCCCCC
Q 023214           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~iil~nk~D~~~  151 (285)
                         .+......++.++|++++|+|++++-+....  ..+......  .....|+++|.||.|...
T Consensus        76 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~iilv~nK~Dl~~  135 (186)
T d2f7sa1          76 ---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENPDIVLIGNKADLPD  135 (186)
T ss_dssp             ---HHHHHHHHHHTTCCEEEEEEETTCHHHHHHH--HHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             ---hhHHHHHHHHhcCCEEEEEEeccccccceee--eeccchhhhhccCCCceEEEEeeeccchh
Confidence               2222333446788999999998743322221  122222211  122348889999999754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.9e-12  Score=100.61  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|.+|+|||||++.++.... +....+   |.... ....... ....+.++|++|........           
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f-~~~~~~---t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------   67 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVP---TVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR-----------   67 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC---CSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTG-----------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-CCccCC---ceeecccccccccceEEeeccccccccccccccc-----------
Confidence            5899999999999999999986653 222222   22211 2222221 23457899999976543222           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ...+..+|++++|+|++++-|-.. ..++...........  |+++|.||.|....
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~--~iilVgnK~Dl~~~  121 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT--KMLLVGCKSDLRTD  121 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTC--EEEEEEECGGGGGC
T ss_pred             cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcc--eEEEEEeccccccc
Confidence            234788999999999975544333 223333333334444  99999999997654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=5.9e-12  Score=105.79  Aligned_cols=130  Identities=17%  Similarity=0.163  Sum_probs=76.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-cceeEEEE------------------------------------
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEMQ------------------------------------   61 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~t~~~~~~------------------------------------   61 (285)
                      .++|+|+|..++|||||+|+|+|...++++..+.+ +.+...+.                                    
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            36899999999999999999999987666553321 11111111                                    


Q ss_pred             ------------EEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHHhhccCCc-cEEEEEEeCCCCCCHHHHHHHH
Q 023214           62 ------------RTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAALH  126 (285)
Q Consensus        62 ------------~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~l~  126 (285)
                                  .+..+.-..++++||||+......+  ......+...+..+...+ +++++|.++...++..+  .+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~~  183 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--ALK  183 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HHH
Confidence                        1111123458999999998643322  112222222222223334 46667777765665554  233


Q ss_pred             HHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          127 SLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       127 ~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +++..-+  ...++++|+||+|....
T Consensus       184 ~~~~~~~--~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         184 IAKEVDP--QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCT
T ss_pred             HHHHhCc--CCCceeeEEeccccccc
Confidence            4444322  22389999999998865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.5e-12  Score=100.25  Aligned_cols=116  Identities=21%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+++|+.|+|||||++.+++...... ..+ ............. .+  ..+.++||+|.......           .
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~-~~~-t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~~~-----------~   69 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN-KEP-TIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASL-----------A   69 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTT-CCC-CSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG-----------H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc-ccc-cccceeecccccc-ccccccccccccCCchhHHHH-----------H
Confidence            6999999999999999999987664322 211 1222222223333 33  46899999997643111           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++|+|..++.+..... ++..+.......  .+++++.||.|...
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~v~nk~d~~~  122 (170)
T d1ek0a_          70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDMLQ  122 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccc--cceeeeeccccccc
Confidence            12367889999999997665554433 333333433333  38999999999753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.9e-11  Score=94.87  Aligned_cols=129  Identities=13%  Similarity=0.179  Sum_probs=70.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ...++|+|+|++|+|||||+|+|++......... .+.+.......... .+......++++..................
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecc-cccceeeccceecc-cccceeeeecccccchhhhhhhhhhhhhhh
Confidence            3348999999999999999999998765332221 12222211222222 344445555555443333333322333333


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..........++++.+............+..+... . .   +.++++||+|....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~v~~k~D~~~~  142 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-N-I---AVLVLLTKADKLAS  142 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T-C---CEEEEEECGGGSCH
T ss_pred             hhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-c-c---cccchhhhhhccCH
Confidence            33334455667777777767777777777766654 2 2   78899999998865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=100.16  Aligned_cols=116  Identities=18%  Similarity=0.093  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      .+|+|+|.+|+|||||++.+++... .....+......  ...... .....+.++|++|...+....           .
T Consensus         6 iKivviG~~~vGKTsli~~~~~~~f-~~~~~~ti~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~-----------~   71 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNY--SANVMVDGKPVNLGLWDTAGQEDYDRLR-----------P   71 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEE--EEEEEETTEEEEEEEECCCCSGGGTTTG-----------G
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-Ccccccceeece--eeeeeccCcceEEEeecccccccchhhh-----------h
Confidence            7999999999999999999997653 232222111111  111222 123457899999976543322           2


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .++..+|++++|+|++++-+-...  .+...+... ....  |+++|.||+|+...
T Consensus        72 ~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~--piilvgnK~Dl~~~  124 (183)
T d1mh1a_          72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNT--PIILVGTKLDLRDD  124 (183)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTS--CEEEEEECHHHHTC
T ss_pred             hcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCCC--cEEEEeecccchhh
Confidence            357889999999999755544332  234444433 3333  99999999997654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.8e-12  Score=96.10  Aligned_cols=118  Identities=24%  Similarity=0.188  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      .+|+++|..|+|||||++.+++.... .....+.+.....  ..+.. .+  ..+.++|+|+...     .   .++  .
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~~~~~d~~~~~g-----~---e~~--~   70 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLMV-DGESATIILLDMWENKG-----E---NEW--L   70 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEE--EEEEE-TTEEEEEEEECCTTTTH-----H---HHH--H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecce--eeecc-CCceeeeeeeccccccc-----c---ccc--c
Confidence            69999999999999999999976532 2211222222221  22223 33  3467889886431     1   111  1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~  151 (285)
                      ...++..+|++++|+|++++-+.... .++..+....+ ....|+++|.||+|+..
T Consensus        71 ~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~  125 (172)
T d2g3ya1          71 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR  125 (172)
T ss_dssp             HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred             ccccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccc
Confidence            23567889999999999755444332 22333333212 22348999999999754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2e-12  Score=99.21  Aligned_cols=117  Identities=16%  Similarity=0.144  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|++||.+|+|||||++.+++... +....+   |....+. .... .....+.++|++|........           
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f-~~~~~~---t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-----------   68 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDP---TIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR-----------   68 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCC---CSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHH-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCccCC---ccccccceeEEeeeeEEEeccccccCcccccccc-----------
Confidence            6899999999999999999986653 222221   2222222 1222 123458999999987643211           


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..++..+|++++|+|++++-+.... .++..+....+. ...|+++|.||+|....
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~  123 (167)
T d1c1ya_          69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred             cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccc
Confidence            1235567999999999766554443 444444443332 22389999999997643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.31  E-value=2.3e-11  Score=93.82  Aligned_cols=116  Identities=13%  Similarity=0.069  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+|+|.+|+|||||++.|.+....... ...+.+    ...... .+..+.++|++|.........           .
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~----~~~~~~-~~~~~~~~d~~~~~~~~~~~~-----------~   78 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN----VEEIVI-NNTRFLMWDIGGQESLRSSWN-----------T   78 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSS----CEEEEE-TTEEEEEEECCC----CGGGH-----------H
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCccc-ccccee----EEEEee-cceEEEEeccccccccccchh-----------h
Confidence            89999999999999999999987753221 111211    222333 577899999998765432222           2


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+..+++++++++..+..+....................|++++.||.|....
T Consensus        79 ~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  131 (177)
T d1zj6a1          79 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  131 (177)
T ss_dssp             HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             hhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc
Confidence            35678999999999755555443222222221122223499999999997654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.29  E-value=6.8e-12  Score=102.17  Aligned_cols=118  Identities=20%  Similarity=0.242  Sum_probs=67.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh---CCcccc--------------------------cccCCCCcceeEEEEEEEeeCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSIL---GRRAFK--------------------------SRASSSGVTSTCEMQRTVLKDGQ   69 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~---g~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~~   69 (285)
                      ..+|+++|+.++|||||+..|+   |.....                          ......+.+.........+ .+.
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~  102 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHR  102 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSE
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-ccc
Confidence            3579999999999999999995   221100                          0011124555555555666 678


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCccccCeEEE
Q 023214           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMIV  142 (285)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~ii  142 (285)
                      .++++||||+.++...           .......+|++++|+++.++.       .+..+..+..+... +-+   ++++
T Consensus       103 ~i~~iDtPGH~df~~~-----------~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~-~i~---~iiv  167 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTN-----------MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-GIN---HLVV  167 (245)
T ss_dssp             EEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-TCS---SEEE
T ss_pred             eeeeecccccccchhh-----------hhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc-CCC---eEEE
Confidence            8999999999876322           123355689999999996542       22445555544443 443   6889


Q ss_pred             EEeCCCCCCC
Q 023214          143 VFTGGDELED  152 (285)
Q Consensus       143 l~nk~D~~~~  152 (285)
                      ++||+|....
T Consensus       168 ~iNKmD~~~~  177 (245)
T d1r5ba3         168 VINKMDEPSV  177 (245)
T ss_dssp             EEECTTSTTC
T ss_pred             EEEcCCCCcc
Confidence            9999998743

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=7.9e-12  Score=96.70  Aligned_cols=123  Identities=20%  Similarity=0.297  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      ..|+|+|.+|+|||||+|+|+|.......  ..+.|...............+.++|+||.....  ..............
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   81 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITS--RKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECC--CCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec--cCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence            37999999999999999999998753322  223333333333333356777888999875311  11111111111122


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....++.++++.+.. ............+..   ..  .|.++++|+.|....
T Consensus        82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~---~~--~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLRE---GK--APVILAVNKVDNVQE  128 (179)
T ss_dssp             CCCCEEEEEEEEETT-CCCHHHHHHHHHHHS---SS--SCEEEEEESTTTCCC
T ss_pred             chhhcceeEEEEecC-ccchhHHHHHHHhhh---cc--Cceeeeeeeeeccch
Confidence            334567888888876 444444333333332   12  278899999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.28  E-value=2.9e-11  Score=91.37  Aligned_cols=115  Identities=12%  Similarity=0.056  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .||+|+|++|+|||||+|.|++.......     .+.......... ....+.++|+||....    .       .....
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~d~~g~~~~----~-------~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNISFTVWDVGGQDKI----R-------PLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCC-----CCSSCCEEEEEC-SSCEEEEEECCCCGGG----H-------HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccc-----cceeeEEEEEee-eeEEEEEecCCCcccc----h-------hhhhh
Confidence            38999999999999999999876642221     111112233333 5778999999997642    1       11223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+...+++++++|..++.+..... .+..+... ......|++++.||.|....
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~k~d~~~~  116 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNA  116 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC
T ss_pred             hhccceeEEEEEEecChHHHHHHHHHHHHHHHh-hcccCceEEEEeeccccccc
Confidence            467789999999997554444322 22122111 11223489999999998765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.5e-12  Score=96.23  Aligned_cols=112  Identities=20%  Similarity=0.144  Sum_probs=68.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (285)
                      ..+|+++|+.|+|||||++.+++... .... +.... . ....+.. ++  ..+.++||+|....     .        
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~~-~t~~~-~-~~~~i~v-~~~~~~l~i~Dt~g~~~~-----~--------   66 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLE-KTESE-Q-YKKEMLV-DGQTHLVLIREEAGAPDA-----K--------   66 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCC-CCCC-CSSCE-E-EEEEEEE-TTEEEEEEEEECSSCCCH-----H--------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC-CCcC-Cccce-e-EEEEeec-CceEEEEEEeeccccccc-----c--------
Confidence            37999999999999999999987763 2211 11111 1 1122333 44  44889999996531     1        


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~  151 (285)
                         ++..+|++++|+|++++-|-.. ..+...+...... ....|+++|.||.|...
T Consensus        67 ---~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~  120 (175)
T d2bmja1          67 ---FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA  120 (175)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCS
T ss_pred             ---cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcch
Confidence               1345799999999975544433 2334444433221 12348889998888643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.1e-11  Score=94.01  Aligned_cols=118  Identities=19%  Similarity=0.119  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (285)
                      .+|+|+|++|+|||||++.+++... .....+ ++........... .+  ..+.++|+||....           ....
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~-~~~~~~-t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~~   72 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKF-DTQLFH-TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------RSLR   72 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC-CC-----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-CCcccc-ceeeeeeeeeeee-cCceeeEeeecccCccee-----------hhhh
Confidence            5899999999999999999986553 222211 1222222222222 33  44789999996532           1133


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (285)
Q Consensus        98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~  151 (285)
                      ...+..+|++++++|..++.+-.. ..++..+......  ....|+++|.||.|...
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~  129 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  129 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh
Confidence            355678899999999875544433 2344445544321  11248999999999754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=6.5e-11  Score=89.56  Aligned_cols=115  Identities=8%  Similarity=-0.023  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (285)
                      ||+++|++|+|||||+|.|++.....     ..+|.......... .+....++|++|......           .....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQARR-----------LWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEECC-TTCCEEEEECCCSGGGGG-----------GGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-----eeceeeEeEEEecc-CCeeEEEEeeccchhhhh-----------hHhhh
Confidence            89999999999999999999876422     22333333444444 577789999998754321           12244


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      +...++++++++..+..+......+.............|++++.||.|....
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~  116 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA  116 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc
Confidence            6778999999999755554443222222222122333588899999998654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.21  E-value=1.6e-10  Score=87.77  Aligned_cols=116  Identities=13%  Similarity=0.021  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|++||.+|+|||||+|.+++......     ..|.......... .+..+.++|+||.......           ...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~   68 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIRPY-----------WRC   68 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGGGG-----------GGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeecccccccccc-----------chh
Confidence            7999999999999999999998764221     2233333344444 6788999999987653221           123


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+...++++++++..+..+....................|++++.||.|....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~  121 (169)
T d1upta_          69 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA  121 (169)
T ss_dssp             GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             hhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccc
Confidence            35677899999998645554443222211111112223488999999998765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.18  E-value=2.4e-11  Score=98.40  Aligned_cols=153  Identities=10%  Similarity=0.010  Sum_probs=87.8

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-C----------cceeEEEEEEEeeCCceE
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-G----------VTSTCEMQRTVLKDGQVV   71 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~----------~t~~~~~~~~~~~~~~~~   71 (285)
                      ++++++|+||.+++|  ..++|+|+||||||||++.|+|-..|..|.... +          ......+..+.. .-..-
T Consensus        14 ~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~   90 (242)
T d1mv5a_          14 SEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS-AIMAG   90 (242)
T ss_dssp             SSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS-CCCCE
T ss_pred             CCceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEcccc-ccCCc
Confidence            357899999999999  899999999999999999999998776654211 0          001111111111 00112


Q ss_pred             EEEeCCCCCC-CCCCcHHHHHHHHHHHhhc--cCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214           72 NVIDTPGLFD-FSAGSEFVGKEIVKCIGMA--KDGIHAVL-VVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F  144 (285)
Q Consensus        72 ~liDtpG~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l-~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~  144 (285)
                      ++.+...+.. .......+......+....  ...++..- .+-+.+..+|+++++++..++.++..+   +++|+   +
T Consensus        91 ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p---~ililDEpt  167 (242)
T d1mv5a_          91 TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP---KILMLDEAT  167 (242)
T ss_dssp             EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCS
T ss_pred             chhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC---CEEEecCCc
Confidence            3333322221 1122222222222111110  11122211 122234479999999999999988765   77777   8


Q ss_pred             eCCCCCCCChhcHHHHhhh
Q 023214          145 TGGDELEDNDETLEDYLGR  163 (285)
Q Consensus       145 nk~D~~~~~~~~l~~~l~~  163 (285)
                      +.+|....  ..+.+.+..
T Consensus       168 s~LD~~~~--~~i~~~l~~  184 (242)
T d1mv5a_         168 ASLDSESE--SMVQKALDS  184 (242)
T ss_dssp             CSSCSSSC--CHHHHHHHH
T ss_pred             cccCHHHH--HHHHHHHHH
Confidence            89997766  556565543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.12  E-value=3.3e-10  Score=87.43  Aligned_cols=117  Identities=11%  Similarity=0.006  Sum_probs=69.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..||+|||++|+|||||++.|.+...... .    ++.........+ .+....++|+++........           .
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~   75 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQH-V----PTLHPTSEELTI-AGMTFTTFDLGGHIQARRVW-----------K   75 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CCGG-----------G
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcce-e----cccccceeEEEe-cccccccccccchhhhhhHH-----------h
Confidence            37999999999999999999998775322 1    122222344444 56778889999877543322           2


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ..+...++++++++..+.......................|++++.||.|....
T Consensus        76 ~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~  129 (186)
T d1f6ba_          76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA  129 (186)
T ss_dssp             GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred             hhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc
Confidence            345677899999998644444332221111111111123499999999997654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.9e-11  Score=97.96  Aligned_cols=140  Identities=16%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---------CcceeEEEEEEEeeCCceEE
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---------GVTSTCEMQRTVLKDGQVVN   72 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~---------~~t~~~~~~~~~~~~~~~~~   72 (285)
                      |+..+.+++||+++.|  ..++|+|+||||||||+++|+|-..+.+|....         .....+.+..+....-..++
T Consensus        11 g~~~~l~~isl~i~~G--ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t   88 (232)
T d2awna2          11 GEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS   88 (232)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred             CCEEEEeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence            3456788999999999  899999999999999999999999877654210         11111222222111112344


Q ss_pred             EEeCCCCCCC--CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214           73 VIDTPGLFDF--SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG  147 (285)
Q Consensus        73 liDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~  147 (285)
                      +.|...+...  ........+.+...+...  +...  +.-.....+|++.++++...+.+...+   .++++   ++.+
T Consensus        89 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~l~~--~~~~~~~~LSGGqkQRvaiAraL~~~P---~illlDEPts~L  161 (232)
T d2awna2          89 VAENMSFGLKLAGAKKEVINQRVNQVAEVL--QLAH--LLDRKPKALSGGQRQRVAIGRTLVAEP---SVFLLDEPLSNL  161 (232)
T ss_dssp             ----------------CHHHHHHHHHHHHC-------------------------CHHHHHHTCC---SEEEEESTTTTS
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CChh--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCC
Confidence            4444333211  111222233333333221  1111  111112468888888888888877664   55555   5555


Q ss_pred             CCC
Q 023214          148 DEL  150 (285)
Q Consensus       148 D~~  150 (285)
                      |-.
T Consensus       162 D~~  164 (232)
T d2awna2         162 DAA  164 (232)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            633

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=3.3e-10  Score=93.61  Aligned_cols=137  Identities=13%  Similarity=0.021  Sum_probs=78.1

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +|.++++|+|+.+++|  ..++|+|+||+|||||+++|+|...+..|.....-  ...+.++.. .-...++.+..-+..
T Consensus        47 ~g~pvL~~isl~i~~G--e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--~i~~v~Q~~-~l~~~tv~eni~~~~  121 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKG--EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFS-WIMPGTIKENIIFGV  121 (281)
T ss_dssp             TTCEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--CEEEECSSC-CCCSEEHHHHHTTTS
T ss_pred             CCCeEEeCeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--EEEEEeccc-cccCceeeccccccc
Confidence            3578999999999999  89999999999999999999998876654322111  011111100 000112222111111


Q ss_pred             CCCCcHHHHHHHHHHH-----hhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCC
Q 023214           82 FSAGSEFVGKEIVKCI-----GMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDEL  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~-----~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~  150 (285)
                      . ..... ........     ...++ +.+..  +-..+..+|+++++++.+++.++.++   +++++   ++.+|..
T Consensus       122 ~-~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~--~~~~~~~LSgGqkQRv~lARaL~~~p---~illLDEPts~LD~~  192 (281)
T d1r0wa_         122 S-YDEYR-YKSVVKACQLQQDITKFAEQDNTV--LGEGGVTLSGGQRARISLARAVYKDA---DLYLLDSPFGYLDVF  192 (281)
T ss_dssp             C-CCHHH-HHHHHHHTTCHHHHTTSTTGGGCE--ECTTCTTSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSSCHH
T ss_pred             c-ccchH-HHHHHHHHHhHHHHHhchhhhhhh--hhhhccCCCHHHHHHHHHHHHHHhCc---cchhhcCccccCCHH
Confidence            0 11111 11111111     01111 12221  22223469999999999999998776   77777   7888843

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=7.7e-11  Score=95.07  Aligned_cols=46  Identities=22%  Similarity=0.162  Sum_probs=41.5

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++||++.+|  ..++|+|+||||||||+|+|+|...|.+|.
T Consensus        13 g~~~vl~~vs~~v~~G--ei~glvG~nGaGKSTLl~~l~G~~~p~~G~   58 (238)
T d1vpla_          13 GKKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSGI   58 (238)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEccceeEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            4567899999999999  899999999999999999999999876653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1.7e-11  Score=98.56  Aligned_cols=46  Identities=26%  Similarity=0.303  Sum_probs=40.9

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++||.++.|  ..++|+|+||||||||+++|+|-..|.+|.
T Consensus        17 g~~~al~~vsl~v~~G--e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~   62 (239)
T d1v43a3          17 GNFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGR   62 (239)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEcceeEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCCE
Confidence            4556788999999999  899999999999999999999998877653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=4e-11  Score=96.92  Aligned_cols=44  Identities=25%  Similarity=0.298  Sum_probs=39.5

Q ss_pred             CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .+++++++||.+++|  .+|+|+|+||||||||++.|+|...+..|
T Consensus        15 ~~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLl~ll~gl~~p~~G   58 (241)
T d2pmka1          15 SPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENG   58 (241)
T ss_dssp             SCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CcceEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcCCCCCC
Confidence            355889999999999  89999999999999999999998876654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.5e-09  Score=85.03  Aligned_cols=112  Identities=14%  Similarity=0.082  Sum_probs=69.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|.+|+|||||++.+.    +....   .+|.......... .+..+.++|++|......           ....
T Consensus         3 iKivllG~~~vGKTsll~r~~----f~~~~---~pTiG~~~~~~~~-~~~~~~~~D~~gq~~~~~-----------~~~~   63 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMR----IIHGQ---DPTKGIHEYDFEI-KNVPFKMVDVGGQRSERK-----------RWFE   63 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH----HHHSC---CCCSSEEEEEEEE-TTEEEEEEEECC------------------CTT
T ss_pred             EEEEEECCCCCCHHHHHHHHh----cCCCC---CCeeeeEEEEEee-eeeeeeeecccceeeecc-----------cccc
Confidence            799999999999999999993    32222   2244444455555 788899999999764321           2235


Q ss_pred             ccCCccEEEEEEeCCCCCCH--------HHHHHHHHHHHHhCc--cccCeEEEEEeCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQ--------EEEAALHSLQTLFGK--KIFDYMIVVFTGGDEL  150 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~--------~~~~~l~~~~~~~~~--~~~~~~iil~nk~D~~  150 (285)
                      ++..+++++++++..+..+.        .....+..+...+..  ....|+++++||.|..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             cccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            57788999999988643221        112223333332221  1123999999999975

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.99  E-value=4.1e-10  Score=88.52  Aligned_cols=44  Identities=16%  Similarity=0.101  Sum_probs=39.9

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .++++++|+.+++|  ..++|+|+||+|||||+++|+|...|..|.
T Consensus        14 ~~vl~~is~~i~~G--ei~~l~G~NGsGKSTLl~~i~gl~~p~~G~   57 (200)
T d1sgwa_          14 KPVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGE   57 (200)
T ss_dssp             SEEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CeEEeceEEEEcCC--CEEEEECCCCChHHHHHHHHhcccccCCCE
Confidence            46889999999999  899999999999999999999998876653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=2.7e-09  Score=85.24  Aligned_cols=112  Identities=17%  Similarity=0.171  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+|+++|.+|+|||||++.+.....    .    +|+......... .+..+.++|+.|.......           ...
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~----~----pTiG~~~~~~~~-~~~~~~~~D~~Gq~~~r~~-----------w~~   66 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHV----V----LTSGIFETKFQV-DKVNFHMFDVGGQRDERRK-----------WIQ   66 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHC----C----CCCSCEEEEEEE-TTEEEEEEECCCSTTTTTG-----------GGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCc----C----CCCCeEEEEEEE-CcEEEEEEecCccceeccc-----------hhh
Confidence            6999999999999999999853221    1    122223334445 6788999999998754322           234


Q ss_pred             ccCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhCccc--cCeEEEEEeCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKKI--FDYMIVVFTGGDELE  151 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~--------~~~~~~~~l~~~~~~~~~~~--~~~~iil~nk~D~~~  151 (285)
                      ++.+++++++|++.++.        ........+..+...+..+.  ..|++|++||.|+..
T Consensus        67 ~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          67 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             hcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            58889999999997521        11112233344444444321  249999999999764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.8e-10  Score=90.16  Aligned_cols=147  Identities=18%  Similarity=0.148  Sum_probs=81.1

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC-
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF-   82 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~-   82 (285)
                      .+++++||.+++|  ..++|||+||||||||++.|+|...|.+|.... +....  ..........--.+...|.++.. 
T Consensus        28 ~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~--~~~~~~~r~~i~~v~Q~~~lf~~t  103 (251)
T d1jj7a_          28 LVLQGLTFTLRPG--EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLP--QYEHRYLHRQVAAVGQEPQVFGRS  103 (251)
T ss_dssp             CSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--GBCHHHHHHHEEEECSSCCCCSSB
T ss_pred             EeEeceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecc--hhhhHHHHHHhhhccccccccCcc
Confidence            4789999999999  899999999999999999999998776543210 00000  00000000001122223332211 


Q ss_pred             -----------CCCcHHHHHHHH-----HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214           83 -----------SAGSEFVGKEIV-----KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---  143 (285)
Q Consensus        83 -----------~~~~~~~~~~~~-----~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---  143 (285)
                                 ............     ..+.....+.+..  +-..+..+|+++++++..++.+...+   +++|+   
T Consensus       104 v~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~--i~~~~~~LSGGqkQRvaiARal~~~p---~ililDEp  178 (251)
T d1jj7a_         104 LQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE--VDEAGSQLSGGQRQAVALARALIRKP---CVLILDDA  178 (251)
T ss_dssp             HHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCB--CCSSCSSSCHHHHHHHHHHHHHTTCC---SEEEEEST
T ss_pred             hhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhh--HhccCccCChhHceEEEEeeccccCC---cEEEecCc
Confidence                       011111111111     1111111122321  11223579999999999999988765   77777   


Q ss_pred             EeCCCCCCCChhcHHHHhh
Q 023214          144 FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~  162 (285)
                      ++.+|....  ..+.+.+.
T Consensus       179 Ts~LD~~~~--~~i~~~l~  195 (251)
T d1jj7a_         179 TSALDANSQ--LQVEQLLY  195 (251)
T ss_dssp             TTTCCHHHH--HHHHHHHH
T ss_pred             CcccChhhH--HHHHHHHH
Confidence            788885543  44555553

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.93  E-value=5.9e-10  Score=89.54  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++||.++.|  ..++|+|+||||||||+++|+|-..|.+|.
T Consensus        14 g~~~al~~vsl~i~~G--e~~~liG~sGaGKSTll~~i~gl~~p~sG~   59 (240)
T d1g2912          14 GEVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQ   59 (240)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEcceeeEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCCCCE
Confidence            4456788999999999  899999999999999999999998876654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=8.7e-10  Score=85.83  Aligned_cols=109  Identities=11%  Similarity=0.040  Sum_probs=69.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|++||..|+|||||++.+.....+..         ......... ....+.++||.|...+..           ...
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~---------~~~~~~~~~-~~~~~~i~D~~Gq~~~~~-----------~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT---------GIVETHFTF-KDLHFKMFDVGGQRSERK-----------KWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC---------SEEEEEEEE-TTEEEEEEEECCSGGGGG-----------GGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc---------cEEEEEEEe-eeeeeeeecccccccccc-----------chh
Confidence            36999999999999999999874332211         112233444 678899999999765322           233


Q ss_pred             hccCCccEEEEEEeCCCCCCH--------HHHH----HHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFSQ--------EEEA----ALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~~--------~~~~----~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      .++..++++++|++..+..+.        ....    +...+.......  .|+++++||.|..
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~--~~~~lv~Nk~d~~  122 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD--TSIILFLNKKDLF  122 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT--SEEEEEEECHHHH
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCC--CCEEEEeccchhh
Confidence            568899999999987433211        1111    222222222222  3999999999964

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.91  E-value=4.8e-10  Score=88.95  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=41.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (285)
                      .+.+++|++|+|||||+|+|++.....++..      ..++|+....+..    +....|+||||+.++...
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l----~~gg~iiDTPG~r~~~l~  163 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF----DFGGYVVDTPGFANLEIN  163 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC----TTSCEEESSCSSTTCCCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEE----CCCcEEEeCCcccccccc
Confidence            6899999999999999999998766544321      1234444434332    223589999999876543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=4.1e-09  Score=82.21  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=72.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+|+++|..|+|||||++.+.... +.     .-+|+......... ....+.++|++|.......           ..
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~-~~-----~~pTiG~~~~~~~~-~~~~~~~~d~~g~~~~~~~-----------~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIH-GS-----GVPTTGIIEYPFDL-QSVIFRMVDVGGQRSERRK-----------WI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT-SS-----CCCCCSCEEEEEEC-SSCEEEEEECCCSTTGGGG-----------GG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC-CC-----CCceeeEEEEEEec-cceeeeecccccccccccc-----------cc
Confidence            3799999999999999999997543 22     12344334444545 6778999999998754321           23


Q ss_pred             hccCCccEEEEEEeCCCCCC-----------HHHHH-HHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           99 MAKDGIHAVLVVFSVRSRFS-----------QEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~~~~~-----------~~~~~-~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      .++.++++++++++..+...           ..... +...+.......  .|++++.||.|..
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN--SSVILFLNKKDLL  125 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS--SEEEEEEECHHHH
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccC--ccEEEecchhhhh
Confidence            45788999999998753211           11122 222222222222  3999999999975

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.89  E-value=3.6e-09  Score=85.88  Aligned_cols=43  Identities=30%  Similarity=0.402  Sum_probs=39.0

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~   48 (285)
                      .++++++|+.+++|  ..++|||+||||||||++.|+|...|..|
T Consensus        28 ~~~L~~isl~i~~G--e~iaivG~sGsGKSTLl~ll~gl~~p~~G   70 (253)
T d3b60a1          28 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEG   70 (253)
T ss_dssp             CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             CceeeceEEEEcCC--CEEEEECCCCChHHHHHHHHhcccCCCcc
Confidence            45889999999999  89999999999999999999998876654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.89  E-value=1.1e-09  Score=87.80  Aligned_cols=44  Identities=16%  Similarity=0.194  Sum_probs=39.3

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ..+.+++|+.+..|  ..++|+|+||||||||+++|.|-..|.+|.
T Consensus        18 ~~aL~~vsl~i~~G--e~~~iiG~sGsGKSTll~~i~gl~~p~~G~   61 (242)
T d1oxxk2          18 VVALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGE   61 (242)
T ss_dssp             EEEEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEE
T ss_pred             EEEEeceEEEECCC--CEEEEECCCCCcHHHHHHHHHcCcCCCCce
Confidence            34678999999999  899999999999999999999988776654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=6.5e-11  Score=96.37  Aligned_cols=44  Identities=32%  Similarity=0.302  Sum_probs=39.8

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .++++++|+.+++|  .+++|+|+||||||||++.|+|...+..|.
T Consensus        31 ~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~   74 (255)
T d2hyda1          31 APILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSGQ   74 (255)
T ss_dssp             CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred             CcceeceEEEEcCC--CEEEEECCCCCcHHHHHHHHHhcCCccccc
Confidence            56899999999999  899999999999999999999988776543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.88  E-value=1.2e-09  Score=91.25  Aligned_cols=90  Identities=19%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS   83 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~   83 (285)
                      .+|+|||.+++|||||+|+|++...+.. ...+.+|..+..+.+..++                ...+.++|.||+....
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~-anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCCc-CCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            8999999999999999999997654322 1234456555555555422                2358899999998644


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~  114 (285)
                      .....++..+...    .+.+|++++|+++.
T Consensus        90 ~~g~GLGn~fL~~----ir~~d~lihVV~~f  116 (296)
T d1ni3a1          90 STGVGLGNAFLSH----VRAVDAIYQVVRAF  116 (296)
T ss_dssp             CSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred             ccccccHHHHHHH----hhccceeEEEEecc
Confidence            4444445555554    45669999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=1.5e-09  Score=91.57  Aligned_cols=88  Identities=16%  Similarity=0.037  Sum_probs=44.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEE--e---------------------eCCceEEEEeCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV--L---------------------KDGQVVNVIDTP   77 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~--~---------------------~~~~~~~liDtp   77 (285)
                      +|||||.+++|||||+|+|+|........  +.+|.....+...  .                     ..+..+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~ny--pftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIANY--PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchhcC--CCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            79999999999999999999987532221  2233222221110  0                     012358999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (285)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~  114 (285)
                      |+......    +..+...+......+|++++|+|+.
T Consensus        80 Gli~ga~~----g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHE----GRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETT
T ss_pred             Ccccchhc----ccchHHHHHHhhccceEEEEEeccc
Confidence            99753211    3344445555667899999999984

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=4.1e-09  Score=84.54  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=38.5

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      .+.+++||.+..|  ..++|+|+||||||||+++|.|-..|.+|.
T Consensus        19 ~al~~vsl~i~~G--e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~   61 (240)
T d3dhwc1          19 QALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEGS   61 (240)
T ss_dssp             EEEEEEEEEECSS--CEEEEEESTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHcCCccccCCc
Confidence            3578999999999  899999999999999999999988776653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.79  E-value=7.7e-09  Score=85.18  Aligned_cols=66  Identities=23%  Similarity=0.336  Sum_probs=43.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHH
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV   89 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~   89 (285)
                      ..+|++||.+++|||||+|+|.|.....++.. +|+|...+..   . .+..+.++||||+.-+.......
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~-pG~Tr~~~~i---~-~~~~~~l~DTPGi~~p~~~~~~~  177 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWV---K-VGKELELLDTPGILWPKFEDELV  177 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE---E-ETTTEEEEECCCCCCSCCCCHHH
T ss_pred             ceEEEEEecCccchhhhhhhhhccceEEECCc-ccccccceEE---E-CCCCeEEecCCCccccCCccHHH
Confidence            38999999999999999999999887555443 4566553322   1 36779999999998766555543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.78  E-value=1.9e-09  Score=89.20  Aligned_cols=88  Identities=18%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS   83 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~   83 (285)
                      .+|+|||.+++|||||+|+|++......  ..+.+|..+..+.+..++                ...+.++|.||+....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~--~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccc--cCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            6899999999999999999998764222  123345455555554421                1247899999997422


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeC
Q 023214           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSV  113 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~  113 (285)
                      .....++..+.+.+    +.+|++++|+++
T Consensus        81 ~~g~Glg~~FL~~i----r~~d~LihVVr~  106 (278)
T d1jala1          81 SKGEGLGNKFLANI----RETDAIGHVVRC  106 (278)
T ss_dssp             HHHGGGTCCHHHHH----HTCSEEEEEEEC
T ss_pred             ccCCCccHHHHHHH----HhccceEEEeec
Confidence            11122334444444    456999999987

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.75  E-value=3.3e-10  Score=90.76  Aligned_cols=38  Identities=26%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             CccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+++++. +  ..++|+||||||||||+++|+|-..|.+|.
T Consensus        17 ~vs~~~~-~--e~~~liGpnGaGKSTll~~i~Gl~~p~~G~   54 (240)
T d2onka1          17 NVDFEMG-R--DYCVLLGPTGAGKSVFLELIAGIVKPDRGE   54 (240)
T ss_dssp             EEEEEEC-S--SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEEEeC-C--EEEEEECCCCChHHHHHHHHHcCCCCCceE
Confidence            5666664 3  488999999999999999999999876653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.74  E-value=1.3e-09  Score=87.90  Aligned_cols=46  Identities=26%  Similarity=0.371  Sum_probs=40.8

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++||.+++|  ..++|+||||||||||+++|+|...|.+|.
T Consensus        17 g~~~al~~vs~~i~~G--ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~   62 (240)
T d1ji0a_          17 GAIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK   62 (240)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEeeeeEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence            4556788999999999  899999999999999999999998876653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=2.2e-09  Score=85.35  Aligned_cols=60  Identities=28%  Similarity=0.388  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC----CC--CcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SS--GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~----~~--~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (285)
                      .+.+++|++|+|||||+|+|++.....++..    ..  .+|+....+.  . .|  -.||||||+.++..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~-~g--g~iiDTPG~r~~~l  163 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--T-SG--GLVADTPGFSSLEF  163 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--E-TT--EEEESSCSCSSCCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--c-CC--CEEEECCccccccc
Confidence            5889999999999999999999865544321    11  2444444432  2 33  46899999987654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=4e-08  Score=77.28  Aligned_cols=140  Identities=20%  Similarity=0.220  Sum_probs=76.4

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----------------------CcceeEEEEE-------
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----------------------GVTSTCEMQR-------   62 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~----------------------~~t~~~~~~~-------   62 (285)
                      +.++++.+..|+++|++|+||||++--|+.... ..+....                      ++........       
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~   82 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVA   82 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHH
Confidence            444555568999999999999999877763321 1110000                      1111000000       


Q ss_pred             -----EEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc----CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC
Q 023214           63 -----TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG  133 (285)
Q Consensus        63 -----~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~  133 (285)
                           .....+..+.||||||...   .+.....++.......-    ..++-.++|+++...  ..+...+......++
T Consensus        83 ~~~~~~~~~~~~d~ilIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~  157 (213)
T d1vmaa2          83 FDAVAHALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVN  157 (213)
T ss_dssp             HHHHHHHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCEEEEecccccc---chHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccccC
Confidence                 0001245689999999764   34455566655554322    236778899998522  223222222223323


Q ss_pred             ccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214          134 KKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       134 ~~~~~~~iil~nk~D~~~~~~~~l~~~l~  162 (285)
                           ..-+++||+|.....+..+.-...
T Consensus       158 -----~~~lI~TKlDe~~~~G~~l~~~~~  181 (213)
T d1vmaa2         158 -----VTGIILTKLDGTAKGGITLAIARE  181 (213)
T ss_dssp             -----CCEEEEECGGGCSCTTHHHHHHHH
T ss_pred             -----CceEEEecccCCCcccHHHHHHHH
Confidence                 667889999987655444444443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.9e-08  Score=84.60  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 023214           17 NGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      |...+|+|.|++|+|||||++.|+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            445899999999999999999997

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.70  E-value=2.1e-09  Score=87.49  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=40.9

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++||++.+|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        15 g~~~aL~~vs~~v~~G--ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~   60 (254)
T d1g6ha_          15 GEFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR   60 (254)
T ss_dssp             TTEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCeEEEcceEEEECCC--CEEEEECCCCCcHHHHHHHHHCCCcCCCcE
Confidence            4566789999999999  899999999999999999999998876653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=4.9e-08  Score=76.58  Aligned_cols=89  Identities=16%  Similarity=0.166  Sum_probs=51.4

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc----CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (285)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil  143 (285)
                      +..+.||||||...   .+.....++.......-    ..++-.++|+++...  ..+...+......++     .--++
T Consensus        91 ~~d~ilIDTaGr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI  160 (211)
T d2qy9a2          91 NIDVLIADTAGRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LTGIT  160 (211)
T ss_dssp             TCSEEEECCCCCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHSC-----CCEEE
T ss_pred             CCCEEEeccCCCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhccC-----CceEE
Confidence            44689999999763   24445555555543221    136788889997522  333333322333333     56788


Q ss_pred             EeCCCCCCCChhcHHHHhhhcCC
Q 023214          144 FTGGDELEDNDETLEDYLGRECP  166 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~~~~~  166 (285)
                      +||.|.....+..+.-......+
T Consensus       161 lTKlDe~~~~G~~l~~~~~~~~P  183 (211)
T d2qy9a2         161 LTKLDGTAKGGVIFSVADQFGIP  183 (211)
T ss_dssp             EECCTTCTTTTHHHHHHHHHCCC
T ss_pred             EeecCCCCCccHHHHHHHHHCCC
Confidence            99999887655555554444333

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.66  E-value=3.4e-08  Score=79.38  Aligned_cols=78  Identities=14%  Similarity=0.054  Sum_probs=43.9

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCC
Q 023214           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (285)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D  148 (285)
                      ..+.++|+||..++..    ........+ . ....+.+++++|+.....+.......+...........|.++++||+|
T Consensus        95 ~~~~~id~~g~~~~~~----~~~~~~~~~-~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETFL----FHEFGVRLM-E-NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHHH----HSHHHHHHH-H-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhHHH----HHHHHHHHH-h-hccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence            3589999999864211    111111111 1 234567888999865566655433333222111112238999999999


Q ss_pred             CCCC
Q 023214          149 ELED  152 (285)
Q Consensus       149 ~~~~  152 (285)
                      ....
T Consensus       169 ~~~~  172 (244)
T d1yrba1         169 LLSE  172 (244)
T ss_dssp             GCCH
T ss_pred             cccH
Confidence            8875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.65  E-value=4.4e-09  Score=85.55  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=40.6

Q ss_pred             CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      |+..+.+++||++..|  ..++|+|+||||||||+++|+|-..+.+|.
T Consensus        13 g~~~al~~vs~~i~~G--Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~   58 (258)
T d1b0ua_          13 GGHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA   58 (258)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEcceeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCccCCCCC
Confidence            4566789999999999  899999999999999999999988765543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.64  E-value=5.3e-09  Score=83.34  Aligned_cols=42  Identities=21%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      +.+++||.++.|  ..++|+|+||||||||+++|+|-..|.+|.
T Consensus        20 al~~isl~i~~G--e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~   61 (230)
T d1l2ta_          20 ALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE   61 (230)
T ss_dssp             EEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEeceEEEEcCC--CEEEEECCCCCCcchhhHhccCCCCCCcce
Confidence            478999999999  899999999999999999999988776653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.64  E-value=5.6e-08  Score=76.34  Aligned_cols=85  Identities=11%  Similarity=0.060  Sum_probs=47.7

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (285)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~  147 (285)
                      +..+.||||||.... ........++.......  .++-+++|+++.....  ....+......++     .--+++||.
T Consensus        94 ~~d~IlIDTaGr~~~-~~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~~--~~~~~~~~~~~~~-----~~~lI~TKl  163 (211)
T d1j8yf2          94 KMEIIIVDTAGRHGY-GEEAALLEEMKNIYEAI--KPDEVTLVIDASIGQK--AYDLASKFNQASK-----IGTIIITKM  163 (211)
T ss_dssp             TCSEEEEECCCSCCT-TCHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGGG--HHHHHHHHHHHCT-----TEEEEEECT
T ss_pred             CCceEEEecCCcCcc-chhhHHHHHHHHHHhhc--CCceEEEEEecccCcc--hHHHHhhhhcccC-----cceEEEecc
Confidence            457999999998532 12222345555554433  3567888999853432  2222222333322     345779999


Q ss_pred             CCCCCChhcHHHHhh
Q 023214          148 DELEDNDETLEDYLG  162 (285)
Q Consensus       148 D~~~~~~~~l~~~l~  162 (285)
                      |.....+..+.-...
T Consensus       164 Det~~~G~~l~~~~~  178 (211)
T d1j8yf2         164 DGTAKGGGALSAVAA  178 (211)
T ss_dssp             TSCSCHHHHHHHHHT
T ss_pred             cCCCcccHHHHHHHH
Confidence            987665444444333

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.62  E-value=4.6e-09  Score=83.58  Aligned_cols=43  Identities=28%  Similarity=0.243  Sum_probs=38.4

Q ss_pred             CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   49 (285)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~   49 (285)
                      ...+++||.+..|  ..++|+|+||||||||+++|+|-..|.+|.
T Consensus        14 ~aL~~vs~~i~~G--e~~~liGpsGaGKSTll~~l~Gl~~p~sG~   56 (229)
T d3d31a2          14 FSLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSGR   56 (229)
T ss_dssp             CEEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEEE
T ss_pred             EEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCCE
Confidence            3568999999999  899999999999999999999998776653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.55  E-value=9.4e-08  Score=74.82  Aligned_cols=85  Identities=15%  Similarity=0.091  Sum_probs=48.7

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh---hc-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG---MA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (285)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil  143 (285)
                      +..+.||||||....   +.....++.....   .. ...++-.++|++++...  .+...+......++     +.-++
T Consensus        88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~~-----~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGVI  157 (207)
T ss_dssp             TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEEE
T ss_pred             CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhccC-----CceEE
Confidence            456899999998743   3333444443332   21 23467888999986332  33333333333334     55678


Q ss_pred             EeCCCCCCCChhcHHHHhh
Q 023214          144 FTGGDELEDNDETLEDYLG  162 (285)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~  162 (285)
                      +||+|.....+..+.-...
T Consensus       158 ~TKlDet~~~G~~l~~~~~  176 (207)
T d1okkd2         158 VTKLDGTAKGGVLIPIVRT  176 (207)
T ss_dssp             EECTTSSCCCTTHHHHHHH
T ss_pred             EeccCCCCCccHHHHHHHH
Confidence            9999987665444444333

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.53  E-value=6e-07  Score=70.17  Aligned_cols=79  Identities=20%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (285)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~  147 (285)
                      +..+.||||||...   .+.....++.......  .++-+++|+++...  .............++     ..-+++||.
T Consensus        92 ~~d~vlIDTaGr~~---~d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TKl  159 (207)
T d1ls1a2          92 ARDLILVDTAGRLQ---IDEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTKL  159 (207)
T ss_dssp             TCCEEEEECCCCSS---CCHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred             cCcceeecccccch---hhhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEeec
Confidence            44689999999874   3445566676665443  45788889887533  233333333333333     456889999


Q ss_pred             CCCCCChhcHH
Q 023214          148 DELEDNDETLE  158 (285)
Q Consensus       148 D~~~~~~~~l~  158 (285)
                      |.....+..+.
T Consensus       160 De~~~~G~~l~  170 (207)
T d1ls1a2         160 DGDARGGAALS  170 (207)
T ss_dssp             GGCSSCHHHHH
T ss_pred             CccccchHHHH
Confidence            98766544443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.47  E-value=4.4e-07  Score=75.97  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +...+|+|.|++|+|||||++.|+.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHH
Confidence            4448999999999999999999873

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=3.3e-08  Score=79.12  Aligned_cols=38  Identities=24%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +....++|+++.+|  ..++|+|+||||||||+++|+|..
T Consensus        12 ~~~l~~isl~I~~G--ei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          12 STRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             TTTSCSEEEEEETT--CEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CceecCEEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCC
Confidence            34578899999999  899999999999999999999965

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.43  E-value=6.7e-07  Score=67.96  Aligned_cols=27  Identities=22%  Similarity=0.461  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRRAFKS   47 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~~~~~   47 (285)
                      +|+|+|+||+|||||++.|+|...+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~   28 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCc
Confidence            799999999999999999998776543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.4e-06  Score=71.28  Aligned_cols=109  Identities=19%  Similarity=0.153  Sum_probs=64.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (285)
                      ++.-.|+++|+.++|||||+|.|+|... |..+....++|.....+.....  .+..+.++||.|+.+...........+
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~i  109 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI  109 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHHH
Confidence            4456899999999999999999998663 4445444556666555544432  355699999999987543222111222


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (285)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~  130 (285)
                      ......   -.+.++|-+.  ......+...+..+..
T Consensus       110 ~~l~~l---lSs~~i~N~~--~~~~~~~l~~L~~~~~  141 (277)
T d1f5na2         110 FALAVL---LSSTFVYNSI--GTINQQAMDQLYYVTE  141 (277)
T ss_dssp             HHHHHH---HCSEEEEEEE--SCSSHHHHHTTHHHHT
T ss_pred             HHHHHH---HhCEEEEecc--ccCcHHHHHHHHHHHH
Confidence            211111   1245555444  3455555554444433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=0.00075  Score=57.18  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      -+++|||++|+|||+++..|+...
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999998777443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2e-05  Score=58.76  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +.|+|+|++|||||||++.|+..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            58999999999999999999853

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.53  E-value=1.7e-05  Score=59.90  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+|+|+|++|+|||||++.|+...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            799999999999999999998543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=9.7e-05  Score=56.99  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .-|+++|.+|+||||+.+.|+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999984

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.38  E-value=5e-05  Score=56.75  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .+|+|+|++||||||+.+.|...
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH
Confidence            79999999999999999999854

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.35  E-value=4.1e-05  Score=57.10  Aligned_cols=23  Identities=26%  Similarity=0.614  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ++|+|+|++||||||+.+.|+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999743

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.32  E-value=6.5e-05  Score=57.31  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      |.|  .||+|+|++||||||..+.|+..
T Consensus         1 p~~--~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           1 PKG--VRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCC--CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCc--cEEEEECCCCCCHHHHHHHHHHH
Confidence            456  89999999999999999999843

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00079  Score=53.00  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..++|.|||.+||||+++++.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHH
Confidence            468899999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=7.1e-05  Score=55.05  Aligned_cols=24  Identities=38%  Similarity=0.642  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|.|+|++||||||+.+.|+...
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=5.6e-05  Score=57.31  Aligned_cols=23  Identities=30%  Similarity=0.658  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .-|+|+||+|+|||||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.16  E-value=0.00013  Score=55.42  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=21.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ...+..|+|.|++|||||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            33347899999999999999999873

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.15  E-value=0.00012  Score=53.37  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .-|+|+|++||||||+++.|+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.15  E-value=8.8e-05  Score=55.26  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ++|+|+|.+||||||+.+.|+...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999997443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.11  E-value=0.00018  Score=53.60  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++||||||+.+.|....
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.11  E-value=0.00011  Score=55.94  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.+|+|+|++||||||+.+.|+...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3789999999999999999997544

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00012  Score=54.95  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|.|.|++|+|||||++.|+...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999988554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.08  E-value=0.00015  Score=54.89  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|+||+||||||+++.|+...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            678999999999999999998553

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.06  E-value=0.00015  Score=53.92  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|.+|||||||++.|+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            36789999999999999988754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.06  E-value=0.00019  Score=54.72  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++||||||+.+.|+...
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            688999999999999999998543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0033  Score=50.01  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..++|.||+|+|||+++++|+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            56899999999999999999854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.05  E-value=0.00016  Score=53.65  Aligned_cols=24  Identities=25%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++||||||+.+.|+...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0005  Score=55.20  Aligned_cols=103  Identities=15%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ..+++|||++|+|||+++..|+....  .+..+..           . .+..+.-+|...+.........+...+...+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~--~~~vp~~-----------l-~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~  104 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIV--QGDVPEV-----------M-ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLK  104 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHH--HTCSCGG-----------G-TTCEEEECCCC---CCCCCSSCHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHH--hCCcccc-----------c-ccceeEEeeechHhccCccchhHHHHHHHHHH
Confidence            36899999999999999999875443  1111110           0 34455566665555433333333444444443


Q ss_pred             hccCCccEEEEEEeCC-----CCCCHHHHHHHHHHHHHhCcc
Q 023214           99 MAKDGIHAVLVVFSVR-----SRFSQEEEAALHSLQTLFGKK  135 (285)
Q Consensus        99 ~~~~~~~~~l~v~~~~-----~~~~~~~~~~l~~~~~~~~~~  135 (285)
                      ......+.++|+-++.     ..-+++.......++-.+..+
T Consensus       105 ~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg  146 (268)
T d1r6bx2         105 QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG  146 (268)
T ss_dssp             HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC
T ss_pred             HhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCC
Confidence            3333334444432321     122334455666666555443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.02  E-value=0.00017  Score=54.34  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +|+|+|++||||||+.+.|+...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999997443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.01  E-value=0.00022  Score=53.22  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|.|+|.+||||||+.+.|+...
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999987443

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.01  E-value=0.00016  Score=53.70  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +|+|+|++||||||+.+.|+...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00023  Score=52.80  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|+|++||||||+.+.|+...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            688899999999999999997543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00029  Score=52.80  Aligned_cols=22  Identities=41%  Similarity=0.373  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .-|+++|.+||||||+.+.++.
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998863

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00021  Score=54.44  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +++|+|+|++||||||..+.|+...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3789999999999999999998543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00018  Score=57.00  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..+.|.|++|+||||+++.++..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHH
Confidence            35889999999999999887643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00028  Score=53.85  Aligned_cols=27  Identities=15%  Similarity=0.347  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ....|+|+|++||||||+.+.|+....
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            347999999999999999999986443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00021  Score=54.32  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      -|+|+||+|||||||++.|+...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999997553

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00022  Score=54.38  Aligned_cols=80  Identities=19%  Similarity=0.218  Sum_probs=45.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (285)
                      .+++|||++|+|||+++..|+....  .+..+..           . .+..+.-+|...+........++...+...+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~--~~~vp~~-----------L-~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e  109 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII--NGEVPEG-----------L-KGRRVLALDMGALVAGAKYRGEFEERLKGVLND  109 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH--HTCSCGG-----------G-TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH--hCCCCHH-----------H-cCceEEEeeHHHHhccCCccHHHHHHHHHHHHH
Confidence            5899999999999999988875443  1111110           1 355566777665544333333444555555533


Q ss_pred             cc-CCccEEEEEEeC
Q 023214          100 AK-DGIHAVLVVFSV  113 (285)
Q Consensus       100 ~~-~~~~~~l~v~~~  113 (285)
                      .. ...++++|+-++
T Consensus       110 ~~~~~~~iILfIDei  124 (195)
T d1jbka_         110 LAKQEGNVILFIDEL  124 (195)
T ss_dssp             HHHSTTTEEEEEETG
T ss_pred             HhcCCCcEEEEcchH
Confidence            22 233566665443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.90  E-value=0.00025  Score=53.56  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +|+|+|++||||||+.+.|+...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00028  Score=54.68  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +..|+|.|++|||||||.+.|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999988643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.0023  Score=50.37  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +.+.|.||+|+||||++..++..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.88  E-value=0.00028  Score=52.89  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|.|++||||||+++.|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00042  Score=53.56  Aligned_cols=22  Identities=14%  Similarity=0.191  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .-+.+.|++|+||||++..++.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4599999999999999987664

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0003  Score=54.33  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|+||+|+|||||++.|+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            678999999999999999998543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.87  E-value=0.00032  Score=53.43  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..+|+|+|++||||||+.+.|+...
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            3899999999999999999998543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.00031  Score=52.87  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+|+|+|++||||||+.+.|+...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999997443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00032  Score=52.70  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .+|+|+|++||||||..+.|+..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999743

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00031  Score=53.58  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 023214           22 VVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~   42 (285)
                      |+|+||+|+||||+++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.79  E-value=0.0048  Score=47.96  Aligned_cols=20  Identities=25%  Similarity=0.232  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~   40 (285)
                      .++|.|||.+||||+++++.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            68999999999999999865

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.78  E-value=0.00039  Score=51.60  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|.|++||||||+.+.|....
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            578888999999999999998654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00039  Score=52.35  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+|+|+|++||||||+.+.|+...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999998543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.75  E-value=0.00031  Score=58.26  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      .+|++.|++|||||||+|+|++...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            5799999999999999999997654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=1.5e-05  Score=61.28  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..+|+|+||+||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            66788999999999999985

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.74  E-value=0.00035  Score=52.10  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|.|+|++||||||+.+.|+...
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999997433

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0005  Score=55.28  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|.|++|+|||+|+++|++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            579999999999999999998655

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00027  Score=53.61  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|.|+|.+||||||+.+.|.-.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68889999999999999999743

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.60  E-value=0.00059  Score=51.96  Aligned_cols=25  Identities=24%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..|.|+|++||||||+.+.|+....
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999985443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.52  E-value=0.00049  Score=54.98  Aligned_cols=24  Identities=25%  Similarity=0.504  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||||.+.|++..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            568999999999999999998654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.49  E-value=0.00079  Score=50.99  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +..|+|.|.+||||||+.+.|.
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999885

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.00077  Score=54.98  Aligned_cols=20  Identities=35%  Similarity=0.531  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~   40 (285)
                      --+|+|+||+||||++.+|.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            45789999999999999884

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.44  E-value=0.00082  Score=50.42  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|.|.+||||||+++.|...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35678899999999999999744

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0013  Score=51.91  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=23.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           16 SNGERTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      .+....++|.||+|+||||++++|+....
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            33446899999999999999999996543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0023  Score=49.62  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.+.|.||+|+||||++..|+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHHh
Confidence            468899999999999999998543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.25  E-value=0.0013  Score=49.96  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|-|..||||||+++.|...
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0061  Score=47.10  Aligned_cols=24  Identities=17%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.+.|.||+|+||||+++.|+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHHH
Confidence            568999999999999999987543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.0012  Score=51.93  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+.+.|.||+|+||||++++|++..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0018  Score=55.06  Aligned_cols=20  Identities=30%  Similarity=0.488  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 023214           21 TVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~   40 (285)
                      --+|+|+||+||||++.+|.
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            45788999999999999984

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0036  Score=45.76  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=24.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      .+|  ..|+|-|+-|||||||++.|+.....
T Consensus        31 ~~g--~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKA--IMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSC--EEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCC--eEEEEecCCCccHHHHHHHHHhhccc
Confidence            455  78999999999999999999865543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.11  E-value=0.0017  Score=50.57  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.+.|.||+|+||||+++.|+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            578999999999999999998644

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0016  Score=50.18  Aligned_cols=26  Identities=15%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRAF   45 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~~   45 (285)
                      +.|+|.||+||||||..+.|+....+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl   29 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQW   29 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            58999999999999999999865543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.0015  Score=51.16  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.+.+.||+|+||||+.+.|+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhcc
Confidence            568999999999999999998544

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.05  E-value=0.002  Score=51.06  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ...++|.|++|+||||+++.|+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.0016  Score=53.50  Aligned_cols=23  Identities=22%  Similarity=0.525  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+++||+|+|||.|.++|+..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            47899999999999999999853

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.01  E-value=0.0019  Score=51.18  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ...|+|.||+|+|||+++++|++.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            357999999999999999999854

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0016  Score=50.79  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +..+.+.|.||+|+||||+++.|+...
T Consensus        31 ~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          31 ANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             TTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            333568999999999999999998653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.96  E-value=0.0022  Score=49.55  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      .+|+|-||+||||||..+.|+....
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788999999999999999986554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0027  Score=51.86  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 023214           17 NGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..+..|+|.|++|||||||.+.|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            345899999999999999988875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.77  E-value=0.0028  Score=48.50  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..|+|.|..||||||+++.|-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999886

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.75  E-value=0.003  Score=48.62  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             cCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           13 TSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ....|  ..|.|.|.+||||||+.+.|...
T Consensus        20 ~~~kg--~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          20 RNQRG--LTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             HTSSC--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hCCCC--eEEEEECCCCCCHHHHHHHHHHH
Confidence            33455  79999999999999999998743

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0029  Score=48.56  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..|+|+|..||||||+.+.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            479999999999999999886

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.51  E-value=0.002  Score=52.04  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=16.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +.|+|.|.+||||||+.+.|..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            6899999999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.49  E-value=0.0035  Score=53.30  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|++.|++|+||||++.+++...
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhh
Confidence            489999999999999999998654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.48  E-value=0.0033  Score=54.10  Aligned_cols=24  Identities=21%  Similarity=0.495  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .+|++|||||+|||-|.++|+...
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.0058  Score=49.25  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 023214           17 NGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..+..|+|-|+.|||||||...|.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            335799999999999999988765

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.38  E-value=0.0047  Score=48.78  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .-|++.||+|+|||+++++|++.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            46999999999999999999954

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0031  Score=49.19  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..|+|-|+.||||||+++.|....
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999987543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0049  Score=48.98  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .-|+|.||+|+|||+++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            569999999999999999998643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0043  Score=48.20  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +.+.++|.|.-|||||||+|.++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4578899999999999999999854

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.29  E-value=0.005  Score=48.70  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|.|+.|+|||||++.++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            5788999999999999998873

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0047  Score=46.94  Aligned_cols=27  Identities=11%  Similarity=0.167  Sum_probs=22.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +++|  ..+.|.|++|+|||||+..++..
T Consensus        20 i~~G--~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETG--SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCC--EEEEEEeCCCCCHHHHHHHHHHH
Confidence            4667  79999999999999999887743

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.18  E-value=0.0039  Score=50.02  Aligned_cols=46  Identities=17%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      ....+|++++|+|+..+++..+....+.+    ...   |.|+|+||+|....
T Consensus        12 ~i~~~DvIl~V~DaR~P~ss~~~~l~~~~----~~K---p~IlVlNK~DLv~~   57 (273)
T d1puja_          12 KLKLIDIVYELVDARIPMSSRNPMIEDIL----KNK---PRIMLLNKADKADA   57 (273)
T ss_dssp             HGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSS---CEEEEEECGGGSCH
T ss_pred             HHHhCCEEEEEEECCCCCCCCCHHHHHHH----cCC---CeEEEEECccCCch
Confidence            45677999999999878887775544443    322   89999999998865

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.14  E-value=0.0054  Score=46.67  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .|+|-|.-||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998743

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.018  Score=44.44  Aligned_cols=28  Identities=18%  Similarity=0.159  Sum_probs=23.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ++.|  ..+.|.|++|+|||||+-.++-..
T Consensus        31 i~~G--~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          31 VETG--SITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EESS--SEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             CcCC--eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4566  789999999999999998887443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0082  Score=46.01  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .-|+|-|+.||||||+++.|...
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67889999999999999988643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.95  E-value=0.0038  Score=49.66  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 023214           22 VVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.+.|++|+||||+++.++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            4456999999999999998554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0079  Score=46.86  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      +..|+|=|.-||||||+++.|...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            368999999999999999999743

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.91  E-value=0.03  Score=42.38  Aligned_cols=107  Identities=10%  Similarity=0.034  Sum_probs=56.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (285)
                      ...+.+.|++|+||||+...++....  . ...               ...++..+...|-   .-.-+.+ +.+..++.
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~--~-~~~---------------~h~D~~~i~~~~~---~I~Id~I-R~i~~~~~   72 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVE--K-FPP---------------KASDVLEIDPEGE---NIGIDDI-RTIKDFLN   72 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHH--T-SCC---------------CTTTEEEECCSSS---CBCHHHH-HHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHh--c-ccc---------------CCCCEEEEeCCcC---CCCHHHH-HHHHHHHh
Confidence            38999999999999999998874221  1 000               1123444543221   1123333 34555554


Q ss_pred             hc-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214           99 MA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (285)
Q Consensus        99 ~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~  150 (285)
                      .. +.+..-++ +++--+.++......+..+.+-.+..+  .+++++|..+.+
T Consensus        73 ~~~~~~~~Kvi-IId~ad~l~~~aqNaLLK~LEEPp~~t--~fiLit~~~~~l  122 (198)
T d2gnoa2          73 YSPELYTRKYV-IVHDCERMTQQAANAFLKALEEPPEYA--VIVLNTRRWHYL  122 (198)
T ss_dssp             SCCSSSSSEEE-EETTGGGBCHHHHHHTHHHHHSCCTTE--EEEEEESCGGGS
T ss_pred             hCcccCCCEEE-EEeCccccchhhhhHHHHHHhCCCCCc--eeeeccCChhhC
Confidence            32 22334444 444435888877655544444322222  555556666544

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0086  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .-|++-|..||||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.77  E-value=0.0097  Score=49.68  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~~   44 (285)
                      ..+++.||+|+|||+|.++|++...
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            6899999999999999999986543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.012  Score=48.07  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      -.++++||+|+|||.|.++|+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            4799999999999999999874

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.64  E-value=0.0094  Score=46.47  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999964

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.45  E-value=0.011  Score=43.88  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .-|++.|++|+||||+.-.++.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            6899999999999999877764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.43  E-value=0.0099  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      .+++++||||+|||-+.++|+.
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            4899999999999999999974

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.012  Score=47.16  Aligned_cols=28  Identities=14%  Similarity=0.090  Sum_probs=24.1

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +++-.|  .|++|+|++|+|||+|+..|+.
T Consensus        38 ~PigrG--Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          38 SPIGRG--QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             SCCBTT--CEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccccCC--CeeeEeCCCCCCHHHHHHHHHH
Confidence            455667  8999999999999999988874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.35  E-value=0.012  Score=43.64  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .-|++.|++|+||||+.-.|...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            68999999999999999887743

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.05  E-value=0.013  Score=45.70  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +++|  ..+.|.|++|+|||||.-.++
T Consensus        33 lp~G--~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQ--AITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESS--EEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCC--EEEEEEcCCCCCHHHHHHHHH
Confidence            4666  789999999999999987765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.03  E-value=0.021  Score=43.99  Aligned_cols=20  Identities=30%  Similarity=0.699  Sum_probs=16.2

Q ss_pred             eEEEEE-cCCCCCHHHHHHHH
Q 023214           20 RTVVLV-GRTGNGKSATGNSI   39 (285)
Q Consensus        20 ~~i~lv-G~~g~GKSTlln~l   39 (285)
                      ..|++. ++.|+||||+.-.|
T Consensus         3 ~vIav~~~kGGvGKTtia~nL   23 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANL   23 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHH
Confidence            568888 77999999997554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.022  Score=44.29  Aligned_cols=26  Identities=15%  Similarity=0.114  Sum_probs=22.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ++.|  ..+.|.|++|+|||+|.-.++.
T Consensus        34 ip~G--~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESM--AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSS--EEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            5777  7999999999999999988763

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.79  E-value=0.07  Score=42.27  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      ++.|  ..+.+.|++|+|||||+=.++....                     ..+..+.+|||-|-.+
T Consensus        57 ~~~g--~i~e~~G~~~~GKT~l~l~~~~~~q---------------------~~g~~~vyIDtE~~~~  101 (269)
T d1mo6a1          57 LPRG--RVIEIYGPESSGKTTVALHAVANAQ---------------------AAGGVAAFIDAEHALD  101 (269)
T ss_dssp             BCSS--SEEEEECSSSSSHHHHHHHHHHHHH---------------------HTTCEEEEEESSCCCC
T ss_pred             cccc--eeEEEecCCCcHHHHHHHHHHHHHh---------------------cCCCEEEEEECCccCC
Confidence            4556  7889999999999999755552111                     0345568899999664

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.021  Score=43.70  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .-|++-|.-||||||+++.|...
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            77999999999999999998743

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.53  E-value=0.011  Score=45.75  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=22.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      +++|  ..+.|.|++|+|||+|+-.++-
T Consensus        31 l~~G--~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQ--SVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETT--EEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCC--eEEEEEeCCCCCHHHHHHHHHH
Confidence            5667  7999999999999999877763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.35  E-value=0.019  Score=44.45  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=21.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ++.|  .-+.|.|++|+|||+|+-.|+-
T Consensus        23 i~~g--sl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKD--SIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESS--CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCC--eEEEEEeCCCCCHHHHHHHHHH
Confidence            4556  6899999999999999977763

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.30  E-value=0.028  Score=41.29  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .-|++.|++|+||||+.-.++..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            68999999999999998666533

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.22  E-value=0.029  Score=44.43  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=20.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +.+|  .-++|.|++|+|||||+..|+
T Consensus        32 ~~~G--~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          32 ARGG--EVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             BCTT--CEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCC--eEEEEEeCCCCCHHHHHHHHH
Confidence            4566  688999999999999986665

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.17  E-value=0.013  Score=48.14  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|++|+|||||+++|.+-
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHHh
Confidence            47999999999999999998753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.04  E-value=0.013  Score=47.83  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 023214           21 TVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .++++|++|+|||.+.+.|++..
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            45567999999999999999654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.024  Score=48.12  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..++|+|++|+|||++++.|+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            468999999999999998876

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.78  E-value=0.025  Score=43.36  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214           14 SPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +++|  ..+.|.|++|+|||+|+-.++
T Consensus        23 i~~G--~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIG--RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETT--SEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCC--eEEEEEeCCCCCHHHHHHHHH
Confidence            5677  799999999999999985544

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.72  E-value=0.036  Score=44.15  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..|+|+|..|.|||||.+.++..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999988743

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.48  E-value=0.035  Score=41.90  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      ..+++.||+++|||+|+++|+.-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            68999999999999999988754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.47  E-value=0.033  Score=45.55  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 023214           20 RTVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .+|+|=|.-|+||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            68999999999999999999743

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.31  E-value=0.037  Score=42.32  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 023214           22 VVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        22 i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      +.|.|++|+|||-|+++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.31  E-value=0.031  Score=45.82  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           20 RTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      .||+|=|.-|+||||+++.|....
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.08  E-value=0.054  Score=44.04  Aligned_cols=22  Identities=23%  Similarity=0.524  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 023214           21 TVVLVGRTGNGKSATGNSILGR   42 (285)
Q Consensus        21 ~i~lvG~~g~GKSTlln~l~g~   42 (285)
                      .+.++||+|+|||.+.+.|+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            6788999999999999988743

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.98  E-value=0.049  Score=44.63  Aligned_cols=25  Identities=32%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..+|.|=|.-|+||||+++.|....
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHh
Confidence            3699999999999999999998653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.95  E-value=0.12  Score=40.81  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=31.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (285)
                      +.|  ..+.+.|++|+|||||+-.++.... .                    .+..+..+||-+-.+
T Consensus        55 p~g--~itei~G~~~sGKT~l~l~~~~~aq-k--------------------~g~~v~yiDtE~~~~   98 (268)
T d1xp8a1          55 PRG--RITEIYGPESGGKTTLALAIVAQAQ-K--------------------AGGTCAFIDAEHALD   98 (268)
T ss_dssp             ETT--SEEEEEESTTSSHHHHHHHHHHHHH-H--------------------TTCCEEEEESSCCCC
T ss_pred             cCc--eEEEEecCCccchHHHHHHHHHHHH-h--------------------CCCEEEEEECCccCC
Confidence            455  6889999999999999977763221 0                    234567899988664

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.78  E-value=0.065  Score=42.43  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (285)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlln~l~g~~   43 (285)
                      ..-.+.+.|+.++|||+|+++|+...
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34688999999999999999987543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.01  E-value=0.076  Score=36.40  Aligned_cols=25  Identities=12%  Similarity=0.119  Sum_probs=22.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214           15 PSNGERTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|  ..|.+.|-+|+||||+.++|.-
T Consensus         4 kqg--f~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQG--FSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCC--EEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccc--eEEEEeCCCCCCHHHHHHHHHH
Confidence            456  8999999999999999999863

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.83  E-value=0.063  Score=42.60  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=22.7

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +++-.|  .|++++|++|+|||+|+-.|+
T Consensus        63 ~pigkG--Qr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          63 APYAKG--GKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             SCEETT--CEEEEEECTTSSHHHHHHHHH
T ss_pred             ccccCC--CEEEeeCCCCCCHHHHHHHHH
Confidence            445566  899999999999999987775

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.48  E-value=0.049  Score=43.48  Aligned_cols=16  Identities=19%  Similarity=0.403  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCCHHHHH
Q 023214           21 TVVLVGRTGNGKSATG   36 (285)
Q Consensus        21 ~i~lvG~~g~GKSTll   36 (285)
                      .+.|+|++|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            5789999999999875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.42  E-value=0.084  Score=41.46  Aligned_cols=21  Identities=29%  Similarity=0.287  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ...+|.|++|+|||||+-.|+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            577899999999999986654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.06  E-value=0.063  Score=43.22  Aligned_cols=16  Identities=19%  Similarity=0.459  Sum_probs=14.1

Q ss_pred             EEEEEcCCCCCHHHHH
Q 023214           21 TVVLVGRTGNGKSATG   36 (285)
Q Consensus        21 ~i~lvG~~g~GKSTll   36 (285)
                      .+.|.|++|+||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4788999999999876

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.41  E-value=0.081  Score=36.83  Aligned_cols=21  Identities=29%  Similarity=0.319  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      .+..|.+++|+|||+++-.++
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            567889999999999885443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.20  E-value=0.11  Score=40.64  Aligned_cols=19  Identities=42%  Similarity=0.658  Sum_probs=16.7

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNS   38 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~   38 (285)
                      .+|+|.|+-|+||||+.-.
T Consensus         2 r~Iai~gKGGvGKTT~a~n   20 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQN   20 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHH
Confidence            5899999999999999744

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.97  E-value=0.13  Score=40.64  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=18.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 023214           19 ERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        19 ~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +..|.+.|+-|+||||+.-.|+
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHHH
Confidence            3688899999999999765544

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.08  E-value=0.15  Score=42.18  Aligned_cols=19  Identities=37%  Similarity=0.562  Sum_probs=16.5

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNS   38 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~   38 (285)
                      ...+|.|++|+||||++..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHH
Confidence            5789999999999998754

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.02  E-value=0.12  Score=41.09  Aligned_cols=27  Identities=11%  Similarity=0.293  Sum_probs=22.2

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~   40 (285)
                      +++-.|  .|++++|+.|+|||+|+-.++
T Consensus        63 ~pig~G--Qr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRG--QRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTT--CBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCC--CEEEeecCCCCChHHHHHHHH
Confidence            456667  899999999999999985544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=87.30  E-value=0.16  Score=39.99  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..+.|.|++|+|||||+=.++
T Consensus        55 ~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHH
Confidence            688999999999999985555

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=86.41  E-value=0.15  Score=34.98  Aligned_cols=17  Identities=35%  Similarity=0.245  Sum_probs=14.3

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 023214           20 RTVVLVGRTGNGKSATG   36 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTll   36 (285)
                      .+++|.+++|+|||..+
T Consensus         8 ~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             CEEEECCCTTSSTTTTH
T ss_pred             CcEEEEcCCCCChhHHH
Confidence            68889999999999443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.39  E-value=1.2  Score=33.96  Aligned_cols=46  Identities=26%  Similarity=0.274  Sum_probs=30.4

Q ss_pred             CccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          103 GIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       103 ~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+|.+++|+++. ..++..-..++-.+....  .+  +.+||+||+|+..+
T Consensus        10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i--~pvIvlnK~DL~~~   56 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DI--QPIICITKMDLIED   56 (231)
T ss_dssp             CCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TC--EEEEEEECGGGCCC
T ss_pred             ccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CC--CEEEEEeccccccc
Confidence            568888888874 346666555544343322  33  78899999998765

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.21  E-value=0.2  Score=38.91  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 023214           20 RTVVLVGRTGNGKSATGNSILG   41 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~g   41 (285)
                      ..|.|.|++|+||+++.+.|-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4689999999999999999963

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.13  E-value=0.16  Score=40.21  Aligned_cols=25  Identities=16%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             ccCCCCCceEEEEEcCCCCCHHHHHHH
Q 023214           12 LTSPSNGERTVVLVGRTGNGKSATGNS   38 (285)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlln~   38 (285)
                      +++-.|  .|++|+|++|+|||+|+-.
T Consensus        62 ~pig~G--Qr~~Ifg~~g~GKt~l~~~   86 (276)
T d1fx0a3          62 IPVGRG--QRELIIGDRQTGKTAVATD   86 (276)
T ss_dssp             SCCBTT--CBCBEEESSSSSHHHHHHH
T ss_pred             ccccCC--ceEeeccCCCCChHHHHHH
Confidence            556677  8999999999999999854

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.76  E-value=0.94  Score=34.38  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=29.0

Q ss_pred             CccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214          103 GIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (285)
Q Consensus       103 ~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~  152 (285)
                      .+|.+++|+++.. .++..-..++-.+....+  .  +.+||+||+|+...
T Consensus        10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~--i--~pvIvlnK~DL~~~   56 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTYIIDKFLVLAEKNE--L--ETVMVINKMDLYDE   56 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT--C--EEEEEECCGGGCCH
T ss_pred             cCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcC--C--CEEEEEeCcccCCH
Confidence            4678888888743 466655444333333323  2  78888999998764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.64  E-value=0.26  Score=36.78  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=17.6

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHh
Q 023214           20 RTVVLVGRT-GNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~-g~GKSTlln~l~   40 (285)
                      .++.|.|.. |+||||+.-.|+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            689999995 999999976554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.85  E-value=0.28  Score=38.75  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGNS   38 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~   38 (285)
                      .+|++-|+-|+||||+.-.
T Consensus         3 r~IaisgKGGVGKTT~a~N   21 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQN   21 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHH
Confidence            5789999999999998644

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.67  E-value=0.36  Score=37.73  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=16.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 023214           20 RTVVLVGRTGNGKSATGNSIL   40 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln~l~   40 (285)
                      ..|++.|+-|+||||+.-.|+
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            566777999999999865543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.95  E-value=0.45  Score=35.03  Aligned_cols=18  Identities=28%  Similarity=0.315  Sum_probs=14.0

Q ss_pred             eEEEEEcCCCCCHHHHHH
Q 023214           20 RTVVLVGRTGNGKSATGN   37 (285)
Q Consensus        20 ~~i~lvG~~g~GKSTlln   37 (285)
                      .++.+++|+|+|||...-
T Consensus        24 ~n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             SCEEEECCTTSCHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHH
Confidence            357788999999997433

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=80.51  E-value=0.49  Score=33.09  Aligned_cols=19  Identities=21%  Similarity=0.191  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCHHH-HHHHH
Q 023214           21 TVVLVGRTGNGKSA-TGNSI   39 (285)
Q Consensus        21 ~i~lvG~~g~GKST-lln~l   39 (285)
                      --+++||-.||||| |++.+
T Consensus         4 L~~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEccccCHHHHHHHHHH
Confidence            34678999999999 44554