Citrus Sinensis ID: 023248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHcccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHccccccccccccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEccccEEEEEc
Coil and Loop (DISEMBL)
mersayvsypyengvmmtrdpkprlrwtaDLHDRFVDAVtklggpdkatpKSVLRLMGLKGLTLYHLKSHLQKYRLGQQtrrqhgadqhkennggssfvnfyngslatsmtssrgdedqgyvpisEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSlsvdssvtgnvnAEAARDQLTTFNLAISNLMESMNeqdrkgnatEFNDMikkgnangssfrvqgdcgeregnegdnkhkvdggsthfdlntkgsydfngiaangiglgpstmlsyn
Flexible Loop (DISEMBL)
mersayvsypyengvmmtrdpkpRLRWTADLHDRFVDAvtklggpdkatpksVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGadqhkennggssFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKkgnangssfrvQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANgiglgpstmlsyn
Low Complexity Region (SEG)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAevqqrlqeqlevqerlqMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Disordered region (IsUnstruct)
********YPYENGVMM*****PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL***********************NFY************************************************RIEAQGKYLQAILQ************************LTTFNLAI**************************************************************NTKGSYDFNGIAANGIG**********
Disordered Region (DISOPRED)
*************************RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR***********************************************************************************************************************************************************************************************************STM****
Disordered Region (DISEMBL)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL**************ENNGGSSFVNFYNGSLATS**********GYVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Disordered Region (DISPRO)
**********************PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQT****************************************YVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS*****************************************************************************VDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAEVxxxxxxxxxxxxxxxxxxxxxGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.519	0.413	0.531	4e-43
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.463	0.319	0.446	1e-28
Q700D9	255	Putative Myb family trans	no	no	0.203	0.227	0.637	8e-15
Q93WJ9	403	Transcription repressor K	no	no	0.210	0.148	0.616	9e-15
Q9C616	388	Probable transcription fa	no	no	0.203	0.149	0.637	2e-14
Q0J235	532	Probable transcription fa	no	no	0.252	0.135	0.554	3e-14
Q9FJV5	276	Probable transcription fa	no	no	0.185	0.192	0.660	7e-14
Q941I2	322	Probable transcription fa	no	no	0.210	0.186	0.583	2e-13
Q9ZWJ9	664	Two-component response re	no	no	0.238	0.102	0.492	2e-11
Q940D0	690	Two-component response re	no	no	0.238	0.098	0.492	3e-11

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 118/160 (73%), Gaps = 12/160 (7%)

Query: 12  ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
           ++G+++T DPKPRLRWT +LH+RFVDAV +LGGPDKATPK+++R+MG+KGLTLYHLKSHL
Sbjct: 24  DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83

Query: 72  QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQ 131
           QK+RLG+Q  +++G    KE +  S+     N + ++ M S   +E             Q
Sbjct: 84  QKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE------------MQ 131

Query: 132 AEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 171
            EVQ+RL EQLEVQ  LQ+RIEAQGKY+Q+IL++A ++L+
Sbjct: 132 MEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA 171

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 96/150 (64%), Gaps = 18/150 (12%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ--- 78
           K R+RWT +LH+ FV+AV +LGG ++ATPK+VL+L+   GLT+YH+KSHLQKYR  +   
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query: 79  QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAEVQQRL 138
           +T    G  Q K+                TS+   +  + +  V I++AL+ Q EVQ+RL
Sbjct: 291 ETSEVTGEPQEKK---------------MTSIEDIKSLDMKTSVEITQALRLQMEVQKRL 335

Query: 139 QEQLEVQERLQMRIEAQGKYLQAILQKAQK 168
            EQLE+Q  LQ++IE QG+YLQ + +K QK
Sbjct: 336 HEQLEIQRSLQLQIEKQGRYLQMMFEKQQK 365

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 43/58 (74%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
           R P PRLRWT +LH  FV AV  LGG  KATPK VL++M +KGLT+ H+KSHLQ YR
Sbjct: 19 VRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 45/60 (75%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
           PR+RWT+ LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T +
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 43/58 (74%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQT 80
           PR+RWT  LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 271

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
           PR+RWT+ LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T +
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 83  QHGADQHKENNGGS 96
              A      +GGS
Sbjct: 385 P--AASSGPADGGS 396

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 41/53 (77%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
           PR+RWT+ LH  FV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 158

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
           PR+RWT  LH  FV AV  LGG ++ATPKSVL LM ++ LTL H+KSHLQ YR  + T +
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
           KPR+ W+ +LH +FV AV +LG  DKA PK +L +M + GLT  ++ SHLQKYR+    R
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLGV-DKAVPKKILEMMNVPGLTRENVASHLQKYRI--YLR 272

Query: 82  RQHGADQHKEN 92
           R  G  QH+ N
Sbjct: 273 RLGGVSQHQGN 283

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
           KPR+ W+ +LH +FV AV +LG  +KA PK +L LM + GLT  ++ SHLQKYR+    R
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLGV-EKAVPKKILELMNVPGLTRENVASHLQKYRI--YLR 293

Query: 82  RQHGADQHKEN 92
           R  G  QH+ N
Sbjct: 294 RLGGVSQHQGN 304

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
356495941	270	PREDICTED: myb family transcription fact	0.901	0.951	0.624	8e-80
224071437	279	predicted protein [Populus trichocarpa]	0.929	0.949	0.582	4e-77
359474709	261	PREDICTED: myb family transcription fact	0.884	0.965	0.574	3e-73
224138332	231	predicted protein [Populus trichocarpa]	0.792	0.978	0.576	5e-71
255557857	260	transcription factor, putative [Ricinus	0.887	0.973	0.549	4e-70
440583724	286	similar to myb family transcription fact	0.894	0.891	0.564	5e-70
357484737	323	Myb family transcription factor-related	0.905	0.798	0.572	1e-68
449453324	261	PREDICTED: myb family transcription fact	0.863	0.942	0.541	2e-68
225879090	280	hypothetical protein [Arabidopsis thalia	0.943	0.960	0.536	1e-67
297791167	280	hypothetical protein ARALYDRAFT_356449 [	0.936	0.953	0.532	1e-66

>gi|356495941|ref|XP_003516829.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  303 bits (775), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 171/274 (62%), Positives = 211/274 (77%), Gaps = 17/274 (6%)

Query: 13  NGVMMT--RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           NGV+MT  RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 10  NGVIMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 69

Query: 71  LQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKC 130
           LQKYRLGQQ ++Q+  + HKEN+   S+VNF N SLA + TS RGD++ G +PI+EAL+C
Sbjct: 70  LQKYRLGQQAQKQN-EEVHKENS-RCSYVNFSNRSLAPN-TSYRGDDEGGEIPIAEALRC 126

Query: 131 QAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 190
           Q EVQ+RL+EQL+VQ++LQMRIEAQGKYLQ++L+KAQ+SLS+D    G  + EA+R +LT
Sbjct: 127 QIEVQKRLEEQLKVQKKLQMRIEAQGKYLQSVLEKAQRSLSLD----GPGSLEASRAELT 182

Query: 191 TFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVD 250
            FN A+SN ME+MN +D K N  E N+   K  ++GS+F  Q + G RE N  D K KV+
Sbjct: 183 EFNSALSNFMENMN-KDSKQNIIEVNNFYSK--SHGSAFYNQ-EVG-REQNR-DQKPKVE 236

Query: 251 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 284
           GGS  FDLN KGS D   ++A G  +  + + SY
Sbjct: 237 GGSIQFDLNIKGSNDL--VSAGGAEMDANMVSSY 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071437|ref|XP_002303459.1| predicted protein [Populus trichocarpa] gi|222840891|gb|EEE78438.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 162/278 (58%), Positives = 193/278 (69%), Gaps = 13/278 (4%)

Query: 8   SYPYENGV-MMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH 66
           SYPYENGV MMTRDP+PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH
Sbjct: 12  SYPYENGVVMMTRDPRPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH 71

Query: 67  LKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISE 126
           LKSHLQKYRLGQQ RRQ+  +Q KE     S V    G       S +       + ++E
Sbjct: 72  LKSHLQKYRLGQQARRQNNTEQSKE-----SRVRAPQGQAPVHQESMKNKVQYREISVAE 126

Query: 127 ALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAAR 186
           AL CQ EVQ+ LQE+LEVQ++LQMRIEAQGKYLQAIL+KAQKSLS + +   N   +A R
Sbjct: 127 ALNCQIEVQKTLQEKLEVQKKLQMRIEAQGKYLQAILEKAQKSLSQNLNDDSNGKLKATR 186

Query: 187 DQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNK 246
             LT FN A+ +LME++N +DRK + T+   +  K N      + +G   E +    D K
Sbjct: 187 AHLTGFNSAVYSLMENLNAEDRKPSITDLKGINMKENGPAMHIQREGQTQETK----DVK 242

Query: 247 HKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 284
           H + G S +FDLNTKG+YDF  ++ANG  L    MLSY
Sbjct: 243 HHLQGDSINFDLNTKGNYDF--VSANGSEL-ELKMLSY 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474709|ref|XP_002264257.2| PREDICTED: myb family transcription factor APL-like [Vitis vinifera] gi|296088397|emb|CBI37388.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 159/277 (57%), Positives = 195/277 (70%), Gaps = 25/277 (9%)

Query: 11  YENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           YENGV+MTRDP+PRLRWT DLHDRFVDAVTKLGGP KATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 5   YENGVVMTRDPRPRLRWTPDLHDRFVDAVTKLGGPHKATPKSVLRLMGLKGLTLYHLKSH 64

Query: 71  LQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKC 130
           LQKYRLGQQ+R+Q   +        S +    +G+ A S  SSR +E QG + I+EA++C
Sbjct: 65  LQKYRLGQQSRKQSITE-------NSDYRTHASGTSAKS--SSRNNE-QGGILIAEAVRC 114

Query: 131 QAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 190
           Q EVQ++L EQ+EVQ++LQMRIEAQGKYLQA+L KAQ+SLS++ +  G++  EA R QLT
Sbjct: 115 QVEVQKQLLEQIEVQKKLQMRIEAQGKYLQAVLDKAQQSLSINVNCPGSL--EAMRAQLT 172

Query: 191 TFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNE---GDNKH 247
            FN+A+S+L E+ NE+D K N  E    I    ANGS F        RE  E    D K 
Sbjct: 173 NFNMALSSLTENTNEEDMKVNIIE--KSIPSNRANGSVF-----TAYREAEELVNKDVKF 225

Query: 248 KVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 284
           +   G  HFDLNTKG+Y+F G  ANG     + M++Y
Sbjct: 226 REGEGFRHFDLNTKGNYEFAG--ANGADF-EAKMIAY 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138332|ref|XP_002326576.1| predicted protein [Populus trichocarpa] gi|222833898|gb|EEE72375.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 155/269 (57%), Positives = 182/269 (67%), Gaps = 43/269 (15%)

Query: 19  RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ 78
           RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 
Sbjct: 1   RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGH 60

Query: 79  QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAEVQQRL 138
           Q RRQ+ ++Q +E+                               ++EAL  Q EVQ+ L
Sbjct: 61  QARRQNISEQSRESR------------------------------VAEALDSQIEVQKTL 90

Query: 139 QEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISN 198
           QEQLEVQ++LQMRIEAQGKYLQ+IL+KAQKSLS + +  GN N EA R QLT FNLAIS+
Sbjct: 91  QEQLEVQQKLQMRIEAQGKYLQSILEKAQKSLSQNLNDDGNGNLEATRAQLTGFNLAISS 150

Query: 199 LMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGN---EGDNKHKVDGGSTH 255
           L+E++N +DRK   T+   +      NGS+  +     +REG      D KH + G S H
Sbjct: 151 LIENLNAEDRKPCITDLKGV--NIRTNGSAIHI-----DREGQTQETKDVKHHLQGDSIH 203

Query: 256 FDLNTKGSYDFNGIAANGIGLGPSTMLSY 284
           FDLNTKG+YDF  +AANG  L    MLSY
Sbjct: 204 FDLNTKGTYDF--VAANGSEL-ELKMLSY 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557857|ref|XP_002519958.1| transcription factor, putative [Ricinus communis] gi|223541004|gb|EEF42562.1| transcription factor, putative [Ricinus communis]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 155/282 (54%), Positives = 194/282 (68%), Gaps = 29/282 (10%)

Query: 1   MERSAYV---SYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLM 57
           MER+A     +Y YENGV+MTRDPKPRLRWT DLH RFVDAVTKLGGPDKATPKSVLRLM
Sbjct: 1   MERAAAAFGGTYGYENGVVMTRDPKPRLRWTPDLHHRFVDAVTKLGGPDKATPKSVLRLM 60

Query: 58  GLKGLTLYHLKSHLQKYRLGQQ-TRRQHGADQHKENNGGSSFVNFYNGSLATSM--TSSR 114
           GLKGLTLYHLKSHLQKYRLGQQ  R+Q+  +Q+KEN+G +S+VNF N S ++ +  TSS 
Sbjct: 61  GLKGLTLYHLKSHLQKYRLGQQQARKQNTKEQYKENSG-ASYVNFSNHSSSSGLHATSSS 119

Query: 115 GDEDQGYVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDS 174
               QG +PI+EALK Q EV  R +EQLEVQ++LQ+RIEAQGKYLQ +L+KAQKS S   
Sbjct: 120 NHNQQGEIPIAEALKSQIEVHTRFKEQLEVQKKLQVRIEAQGKYLQDLLEKAQKSFS-SL 178

Query: 175 SVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGD 234
            + G+ N + A             L+++ N ++RK N     D+      N S F V  +
Sbjct: 179 DMKGSCNLDLA-------------LIKNTNAEERKEN---LKDIF--AEPNYSVFHVSRE 220

Query: 235 CGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGL 276
              ++ N  D +HK++G S H DLNTKGSYDF  +  + + L
Sbjct: 221 AEMQKIN--DFEHKIEG-SIHLDLNTKGSYDFAAVNGSQLEL 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440583724|emb|CCH47226.1| similar to myb family transcription factor APL [Lupinus angustifolius]

 Score =  270 bits (690), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 157/278 (56%), Positives = 194/278 (69%), Gaps = 23/278 (8%)

Query: 14  GVMM--TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
           GVMM  TRD KPRLRWT DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL
Sbjct: 18  GVMMSMTRDTKPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 77

Query: 72  QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGY------VPIS 125
           QKYRLGQ TR+Q+  + HKEN    S+VNF + S +   T  RGD ++G       +PI+
Sbjct: 78  QKYRLGQHTRKQN-EEPHKENT-RCSYVNFSSHS-SEPNTIYRGDNEKGLNNYNREIPIA 134

Query: 126 EALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAA 185
           +AL+ Q EVQ++L+EQLEVQ +LQMRIEAQG YLQA+L+K+Q+S S+D    G    EA+
Sbjct: 135 KALRHQIEVQKKLEEQLEVQRKLQMRIEAQGMYLQAVLEKSQRSFSMD----GPDRLEAS 190

Query: 186 RDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDN 245
           R +L  FN  +SN ME++N +D K N    ND+ +KG+ + S    QG   E +    D 
Sbjct: 191 RAKLNEFNSVLSNFMENVN-KDCKENLVGMNDLYRKGHGSSSFHIYQGGIEENK----DQ 245

Query: 246 KHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLS 283
           K KV+GG   FDLN KGSYD   ++A G  +  + MLS
Sbjct: 246 KSKVEGGMIQFDLNIKGSYDL--VSAGGAEM-ETKMLS 280

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484737|ref|XP_003612656.1| Myb family transcription factor-related protein [Medicago truncatula] gi|355513991|gb|AES95614.1| Myb family transcription factor-related protein [Medicago truncatula]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 157/274 (57%), Positives = 194/274 (70%), Gaps = 16/274 (5%)

Query: 13  NGVMMT--RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           +G+MMT  RDPKPRLRWT DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 59  DGMMMTMTRDPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 118

Query: 71  LQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKC 130
           LQKYRLGQ  R+Q+  +Q KENN   S+VNF N S  T+ T+  GD + G + I EAL+ 
Sbjct: 119 LQKYRLGQHARKQN-EEQFKENN-RCSYVNFSNHSSGTN-TNYGGDNEGGEIQIGEALRQ 175

Query: 131 QAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 190
           Q EVQ+RL+EQLEVQ +LQMRIEAQGKYLQA+L+KAQ SL  D    G  N +A++ QL 
Sbjct: 176 QIEVQKRLEEQLEVQNKLQMRIEAQGKYLQAVLEKAQTSLPQD----GPGNLDASKAQLA 231

Query: 191 TFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVD 250
            FN A++N ME+MN +D K N  + N+   K +A   +F  Q   G  E  E   K +V+
Sbjct: 232 EFNSALTNFMENMN-KDSKENILDMNEFHNKNHA--QAFNYQEVIGTEEHKEL--KPQVE 286

Query: 251 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 284
           GG+   DLN KG  + + ++A+G  +  S M+SY
Sbjct: 287 GGAVQLDLNIKGGNE-HLVSADGAEM-ESNMVSY 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453324|ref|XP_004144408.1| PREDICTED: myb family transcription factor APL-like [Cucumis sativus] gi|449500083|ref|XP_004160999.1| PREDICTED: myb family transcription factor APL-like [Cucumis sativus]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/275 (54%), Positives = 189/275 (68%), Gaps = 29/275 (10%)

Query: 1   MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLK 60
           MER+    YPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGP+KATPKSVLRLMGLK
Sbjct: 1   MERN----YPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLK 56

Query: 61  GLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG 120
           GLTLYHLKSHLQKYRLG QTR+Q+ A+Q  E++G  +  NF           S  +ED  
Sbjct: 57  GLTLYHLKSHLQKYRLGLQTRKQNVAEQRNESSG--TLSNF-----------SGVEEDDR 103

Query: 121 YVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNV 180
            + I+EALK   EVQ+ + EQLEVQ +LQMRIEAQGKYLQ IL+ AQKSL++  ++  N+
Sbjct: 104 GMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILENAQKSLAL--AINSNL 161

Query: 181 NA--EAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGER 238
            +  ++   QL  F+ A+S+ +E   +Q+ +G+ T  ND+ KK    G S  +Q  C   
Sbjct: 162 GSLDQSTEMQLINFDAALSDQIEKFKKQEIRGSITNLNDVCKK---TGDSL-IQI-CKME 216

Query: 239 EGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANG 273
              E  N+  ++    +FDLN+KG YD+   +ANG
Sbjct: 217 AAEEDTNEFNIEKNMINFDLNSKGGYDY---SANG 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225879090|dbj|BAH30615.1| hypothetical protein [Arabidopsis thaliana]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/287 (53%), Positives = 190/287 (66%), Gaps = 18/287 (6%)

Query: 1   MERSAYVSYPYENG-VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGL 59
           MER       Y+NG VMMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGL
Sbjct: 1   MERVNLGGLGYDNGGVMMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGL 60

Query: 60  KGLTLYHLKSHLQKYRLGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDED 118
           KGLTLYHLKSHLQKYRLGQQ  ++Q+  +Q+KE N GSS+V+F N S       SR D  
Sbjct: 61  KGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKE-NAGSSYVHFDNCSQGGISNDSRFDNH 119

Query: 119 Q---GYVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSS 175
           Q   G VP +EA++ Q + QQR QEQLEVQ++LQMR+EAQGKYL  +L+KAQKSL     
Sbjct: 120 QRQSGNVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPC--- 176

Query: 176 VTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDC 235
             GN   E  + Q + FNLA+S L+ S  + ++ G  T+ + +   G  +   FR+   C
Sbjct: 177 --GNA-GETDKGQFSDFNLALSGLVGSDRKNEKAGLVTDISHL--NGGDSSQEFRL---C 228

Query: 236 GEREGNE-GDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 281
           GE+E  E GD   K + G  HFDLN+K  YD       GI + P+ +
Sbjct: 229 GEQEKIETGDACVKPESGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791167|ref|XP_002863468.1| hypothetical protein ARALYDRAFT_356449 [Arabidopsis lyrata subsp. lyrata] gi|297309303|gb|EFH39727.1| hypothetical protein ARALYDRAFT_356449 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/289 (53%), Positives = 191/289 (66%), Gaps = 22/289 (7%)

Query: 1   MERSAYVSYPYENG-VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGL 59
           MER       Y+NG VMMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGL
Sbjct: 1   MERVNLGGLGYDNGGVMMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGL 60

Query: 60  KGLTLYHLKSHLQKYRLGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGD-- 116
           KGLTLYHLKSHLQKYRLGQQ  ++Q+  +Q+KE N GSS+V+F N S       SR D  
Sbjct: 61  KGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKE-NAGSSYVHFDNCSQGGISNESRFDSG 119

Query: 117 --EDQGYVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDS 174
                G VP +EA++ Q + QQR QEQLEVQ++LQMR+EAQGKYL  +L+KAQKS+    
Sbjct: 120 NQRQSGNVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSIPC-- 177

Query: 175 SVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSS-FRVQG 233
              GNV  E  + Q + FNLA+S L+ S ++ ++ G     + +    NA+ S  FR+  
Sbjct: 178 ---GNV-GETDKGQFSDFNLALSGLVGSDHKNEKVGLVANISHL----NADSSEDFRL-- 227

Query: 234 DCGEREGNE-GDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 281
            CGE+E  E GD   K + G  HFDLN+K  YD       GI + P+ +
Sbjct: 228 -CGEQEKIETGDACVKPESGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.891	0.962	0.498	3.3e-56
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.635	0.607	0.466	2.7e-36
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.631	0.610	0.447	1.7e-34
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.687	0.547	0.406	5.2e-33
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.621	0.440	0.424	3.3e-31
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.628	0.454	0.414	1.1e-30
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.536	0.651	0.411	3.1e-28
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.603	0.510	0.403	3.9e-28
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.505	0.503	0.419	7.6e-25
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.484	0.307	0.371	6e-20

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 135/271 (49%), Positives = 167/271 (61%)

Query:    16 MMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
             MMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGLKGLTLYHLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    76 LGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQ---GYVPISEALKCQ 131
             LGQQ  ++Q+  +Q+KEN  GSS+V+F N S       SR D  Q   G VP +EA++ Q
Sbjct:    61 LGQQQGKKQNRTEQNKEN-AGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQ 119

Query:   132 AXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTT 191
                               MR+EAQGKYL  +L+KAQKSL       GN   E  + Q + 
Sbjct:   120 VDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPC-----GNAG-ETDKGQFSD 173

Query:   192 FNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNE-GDNKHKVD 250
             FNLA+S L+ S  + ++ G  T+ + +   G  +   FR+   CGE+E  E GD   K +
Sbjct:   174 FNLALSGLVGSDRKNEKAGLVTDISHL--NGGDSSQEFRL---CGEQEKIETGDACVKPE 228

Query:   251 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 281
              G  HFDLN+K  YD       GI + P+ +
Sbjct:   229 SGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 259

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 91/195 (46%), Positives = 125/195 (64%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P +  +++T DPKPRLRWT +LH+RFVDAVT+LGGPDKATPK+++R MG+KGLTLYHLKS
Sbjct:    29 PGDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKS 88

Query:    70 HLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYN--GSLATS-MTSSRGDEDQGYVPISE 126
             HLQK+RLG    RQ G +   EN+  +S V      GS +TS M  ++ ++++GY  ++E
Sbjct:    89 HLQKFRLG----RQAGKES-TENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGY-QVTE 142

Query:   127 ALKCQAXXXXXXXXXXXXXXXXX---MRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAE 183
             AL+ Q                     +RIEAQGKYLQ+IL+KA K+   D         E
Sbjct:   143 ALRAQMEVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAF--DEQAATFAGLE 200

Query:   184 AARDQLTTFNLAISN 198
             AAR++L+   + +SN
Sbjct:   201 AAREELSELAIKVSN 215

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 85/190 (44%), Positives = 119/190 (62%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P +  +++T DPKPRLRWT++LH+RFVDAVT+LGGPDKATPK+++R MG+KGLTLYHLKS
Sbjct:    25 PIDACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKS 84

Query:    70 HLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALK 129
             HLQK+RLG+Q+ ++   D  K+ +  +   +   GS +TS       E      ++EAL+
Sbjct:    85 HLQKFRLGRQSCKE-SIDNSKDVSCVAESQD--TGSSSTSSLRLAAQEQNESYQVTEALR 141

Query:   130 CQAXXXXXXXXXXXXXXXXX---MRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAAR 186
              Q                     +RIEAQGKYLQ+IL+KA K+  ++         EAAR
Sbjct:   142 AQMEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKA--IEEQAVAFAGLEAAR 199

Query:   187 DQLTTFNLAI 196
             ++L+   LAI
Sbjct:   200 EELS--ELAI 207

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 87/214 (40%), Positives = 128/214 (59%)

Query:    12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
             ++G+++T DPKPRLRWT +LH+RFVDAV +LGGPDKATPK+++R+MG+KGLTLYHLKSHL
Sbjct:    24 DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83

Query:    72 QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVP--ISEALK 129
             QK+RLG+Q  +++G    KE +  S+     N + ++ M S   +E Q  V   + E L+
Sbjct:    84 QKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLE 143

Query:   130 CQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQL 189
              Q                  +RIEAQGKY+Q+IL++A ++L+ ++       A AA    
Sbjct:   144 VQRHLQ--------------LRIEAQGKYMQSILERACQTLAGENMAAAT--AAAAVGGG 187

Query:   190 TTFNLAISNLMESMNEQDRKGNATEFNDMIKKGN 223
                NL  S+L  ++       +   F D+   GN
Sbjct:   188 YKGNLGSSSLSAAVGPPPHPLSFPPFQDLNIYGN 221

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 76/179 (42%), Positives = 110/179 (61%)

Query:    12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
             ++G++++ D KPRL+WT DLH+RFV+AV +LGG DKATPK+++++MG+ GLTLYHLKSHL
Sbjct:    35 DSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHL 94

Query:    72 QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQ 131
             QKYRL +    Q  +  +K +       N      + S + S G +    +PIS+AL+ Q
Sbjct:    95 QKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQ 154

Query:   132 AXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 190
                               +RIEAQGKYLQ+IL+KAQ++L   +   G    EA + QL+
Sbjct:   155 IEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQN--LGAAGIEATKAQLS 211

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 75/181 (41%), Positives = 106/181 (58%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P ++G++++ D KPRL+WT DLH+RF++AV +LGG DKATPK+++++MG+ GLTLYHLKS
Sbjct:    33 PGDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKS 92

Query:    70 HLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALK 129
             HLQKYRL +    Q     +K            +     S   S G +     PI EAL+
Sbjct:    93 HLQKYRLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQ 152

Query:   130 CQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQL 189
              Q                  +RIEAQGKYLQ++L+KAQ++L   +   G    EAA+ QL
Sbjct:   153 MQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQN--LGAAGIEAAKVQL 210

Query:   190 T 190
             +
Sbjct:   211 S 211

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 70/170 (41%), Positives = 104/170 (61%)

Query:    13 NGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72
             +G+++T DPKPRLRWT +LH+RFVDAVT LGGP+KATPK+++R+MG+KGLTLYHLKSHLQ
Sbjct:    14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

Query:    73 KYRLGQQTRRQHGADQH---KENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALK 129
             K+RLG+Q  ++H  +     ++ N  S      N    TS      + ++  + +   ++
Sbjct:    74 KFRLGKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNEMQMEVQRRIE 133

Query:   130 CQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKA----QKSLSVDSS 175
              +                   RI AQGKY++++L+KA    + SL+ D S
Sbjct:   134 EEVVIERQVN----------QRIAAQGKYMESMLEKACETQEASLTKDYS 173

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 73/181 (40%), Positives = 108/181 (59%)

Query:    15 VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74
             ++++ D KPRL+WT DLH +F++AV +LGGP+KATPK ++++M + GLTLYHLKSHLQKY
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    75 RLGQQTRRQHG---ADQHKENNGGSSFVNFYNGSLATSMTSSRGD--EDQGYVPISEALK 129
             RLG+  +            EN    S  N        S+T    +  +D+G + I+EAL+
Sbjct:    87 RLGKSMKFDDNKLEVSSASENQEVES-KNDSRDLRGCSVTEENSNPAKDRG-LQITEALQ 144

Query:   130 CQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQL 189
              Q                  ++IEAQGKYLQ++L KAQ++L+  SS   N+  + AR +L
Sbjct:   145 MQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSS--SNLGMDFARTEL 202

Query:   190 T 190
             +
Sbjct:   203 S 203

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 68/162 (41%), Positives = 95/162 (58%)

Query:    22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
             K RLRWT +LH+RFVDAV +LGGPD+ATPK VLR+MG++GLT+YH+KSHLQKYRL +   
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL- 73

Query:    82 RQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAXXXXXXXXX 141
                 + + K+ +   S      G + + +  S G      + I+EALK Q          
Sbjct:    74 -PDSSSEGKKTDKKES------GDMLSGLDGSSG------MQITEALKLQMEVQKRLHEQ 120

Query:   142 XXXXXXXXMRIEAQGKYLQAILQKAQKSLSV----DSSVTGN 179
                     +RIEAQGKYL+ I+++ Q+   V     + VTG+
Sbjct:   121 LEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLGEPSAPVTGD 162

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 55/148 (37%), Positives = 85/148 (57%)

Query:    22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
             K R+RWT +LH+ FV AV KL GP+KATPK+V +LM ++GLT+YH+KSHLQKYRL +   
Sbjct:   241 KSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMP 300

Query:    82 RQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAXXXXXXXXX 141
              +   ++ + +N            LA S  S   ++ +G + ++EAL+ Q          
Sbjct:   301 EKK--EEKRTDNSEEK-------KLALSK-SEADEKKKGAIQLTEALRMQMEVQKQLHEQ 350

Query:   142 XXXXXXXXMRIEAQGKYLQAILQKAQKS 169
                     +RIE   KYL+ +L++ +K+
Sbjct:   351 LEVQRVLQLRIEEHAKYLEKMLEEQRKT 378

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030735 hypothetical protein (279 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-24
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	1e-18
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	5e-11
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-07

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 93.2 bits (232), Expect = 1e-24
 Identities = 38/57 (66%), Positives = 43/57 (75%)

Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ 78
          KPR+ WT DLHDRF+ AV KLGGPD ATPK +L LM + GLT   + SHLQKYRL Q
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 77.3 bits (191), Expect = 1e-18
 Identities = 36/50 (72%), Positives = 43/50 (86%)

Query: 122 VPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 171
           + I+EAL+ Q EVQ+RL EQLEVQ  LQ+RIEAQGKYLQ IL+KAQK+LS
Sbjct: 2   MQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 62.5 bits (151), Expect = 5e-11
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 9/125 (7%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
           K ++ WT +LH RFV AV +LG  +KA P  +L LMG++ LT +++ SHLQKYR    + 
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR----SH 289

Query: 82  RQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPI-SEALKCQAEVQQRLQE 140
           R+H A +  E    +S+ +    + A    SSR D     VPI +  ++ +  +   +Q 
Sbjct: 290 RRHLAAREAE---AASWTHRRAYTQAPWPRSSRRDGLPYLVPIHTPHIQPRPSMAMAMQP 346

Query: 141 QLEVQ 145
           QL+  
Sbjct: 347 QLQTP 351

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
          R  WT +  +  ++AV K G  +      + + +   G T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.92
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.86
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.44
smart00426	68	TEA TEA domain.	90.33
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	90.24

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.92  E-value=6.9e-26  Score=164.64  Aligned_cols=51  Identities=71%  Similarity=0.912  Sum_probs=49.0

Q ss_pred             CcchHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 023248          121 YVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS  171 (285)
Q Consensus       121 ~~~i~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYLqsiLEkaq~~L~  171 (285)
                      +++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            478999999999999999999999999999999999999999999999875

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=9.3e-24  Score=203.71  Aligned_cols=62  Identities=45%  Similarity=0.753  Sum_probs=58.3

Q ss_pred             cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248           17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ   79 (285)
Q Consensus        17 ~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~   79 (285)
                      ....+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            344678999999999999999999998 79999999999999999999999999999999876

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.86  E-value=4.1e-22  Score=146.68  Aligned_cols=56  Identities=66%  Similarity=1.042  Sum_probs=54.3

Q ss_pred             CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248           22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG   77 (285)
Q Consensus        22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~   77 (285)
                      |+|++||+|+|.+|++||+.+|+.+.||||.|+++|++++||..||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            79999999999999999999998899999999999999999999999999999975

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.44  E-value=0.0004  Score=48.20  Aligned_cols=48  Identities=27%  Similarity=0.387  Sum_probs=41.6

Q ss_pred             CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023248           24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR   75 (285)
Q Consensus        24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR   75 (285)
                      |-.||++=+..|++||.++|.   -.-+.|...|+ ++-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992   26899999999 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=90.33  E-value=0.31  Score=38.01  Aligned_cols=18  Identities=22%  Similarity=0.584  Sum_probs=16.6

Q ss_pred             ccChHHHHHHHHHHHHhC
Q 023248           26 RWTADLHDRFVDAVTKLG   43 (285)
Q Consensus        26 rWT~eLH~rFV~AV~~LG   43 (285)
                      .|.++|-..|++|+...-
T Consensus         5 vWp~~lE~Af~~aL~~~~   22 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP   22 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC
Confidence            699999999999999875

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=90.24  E-value=0.58  Score=34.71  Aligned_cols=34  Identities=38%  Similarity=0.497  Sum_probs=25.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 023248          136 QRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSL  170 (285)
Q Consensus       136 rrLhEQLEVQR~LQlRIEAQGKYLqsiLEkaq~~L  170 (285)
                      --|+.|+||||+|.=.+|.| |-||.-+|...+-|
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence            45778999999999888888 66776666555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		1e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77
          T   KPR+ WT +LH++F+ AV  LG  ++A PK +L LM +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	5e-25

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 93.8 bits (233), Expect = 5e-25
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77
          T   KPR+ WT +LH++F+ AV  LG  ++A PK +L LM +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 78 QQ 79
           +
Sbjct: 60 LK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	90.64
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	90.21
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	89.66
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	87.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	86.67
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	84.89
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	82.87
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	80.07

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=9.4e-30  Score=190.87  Aligned_cols=61  Identities=44%  Similarity=0.788  Sum_probs=57.8

Q ss_pred             ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248           18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ   79 (285)
Q Consensus        18 s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~   79 (285)
                      ++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 79999999999999999999999999999999753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.64  E-value=0.5  Score=34.46  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=41.6

Q ss_pred             CCCCCcccChHHHHHHHHHHHHhCCCCCCCh---hHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248           20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATP---KSVLRLMGLKGLTLYHLKSHLQKYRLG   77 (285)
Q Consensus        20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtP---K~IL~lM~v~gLT~~hVKSHLQKYRl~   77 (285)
                      +...+=.||+|=+.+|+++|..+| .+...|   +.|-+.|  +|=|..+|+.|-++|-..
T Consensus         4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence            344556899999999999999998 333223   3455554  689999999999998654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=90.21  E-value=1.1  Score=33.93  Aligned_cols=46  Identities=15%  Similarity=0.133  Sum_probs=39.0

Q ss_pred             CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248           23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY   74 (285)
Q Consensus        23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY   74 (285)
                      .+-.||++=+.+|++||...|+    .=+.|-+.|+  +=|..+++.|-++|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            4678999999999999999993    3477777764  78999999999876

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=89.66  E-value=0.99  Score=32.85  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=42.1

Q ss_pred             CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248           20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG   77 (285)
Q Consensus        20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~   77 (285)
                      +...+-.||+|=++.|+++|..+|-    .=..|-..|  ||=|-.+|+.|.++|-..
T Consensus         5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            3446678999999999999999992    456676654  789999999999988544

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=87.56  E-value=0.38  Score=37.54  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhh---h-C-------------CCCCCHHHHHHhhhhhhhhh
Q 023248           21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRL---M-G-------------LKGLTLYHLKSHLQKYRLGQ   78 (285)
Q Consensus        21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~l---M-~-------------v~gLT~~hVKSHLQKYRl~~   78 (285)
                      ++..=+|.++|-..|++|+...-=....  |-+|..   | |             -+-=|..+|.||||.-|..+
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~   75 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK   75 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence            4456689999999999999987511122  222211   1 1             13346789999999866543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=86.67  E-value=2.4  Score=29.82  Aligned_cols=51  Identities=24%  Similarity=0.194  Sum_probs=39.9

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhh
Q 023248           21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL   76 (285)
Q Consensus        21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl   76 (285)
                      +-.|-.||+|=..+|++||..+| .  ..=+.|-+.|  +|=|-.+++.|-++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            44566899999999999999998 1  1346677776  67899999999887643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=84.89  E-value=1.5  Score=43.45  Aligned_cols=52  Identities=25%  Similarity=0.414  Sum_probs=44.7

Q ss_pred             CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248           22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ   79 (285)
Q Consensus        22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~   79 (285)
                      +..-+||++=|..|++|+.+.|   + .=+.|-++++-.  |..+|++|.++||....
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGNK--SVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence            5678999999999999999998   2 578888887765  89999999999987654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=82.87  E-value=2  Score=39.21  Aligned_cols=54  Identities=20%  Similarity=0.317  Sum_probs=44.8

Q ss_pred             CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248           20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ   79 (285)
Q Consensus        20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~   79 (285)
                      ..+..-+||+|=+..|++|+...|   + .=..|-++  |++=|..+|++|..+||....
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYG---K-DW~~IAk~--VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDV--IGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHS---S-CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence            446677999999999999999998   2 37778777  568899999999999986543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=80.07  E-value=5  Score=28.90  Aligned_cols=52  Identities=17%  Similarity=0.242  Sum_probs=37.0

Q ss_pred             cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 023248           17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL   71 (285)
Q Consensus        17 ~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHL   71 (285)
                      +++..+.|-.||+|=-++.+++|.+.|.   -.=+.|.+.++.+|=|-.+++-+-
T Consensus         4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw   55 (64)
T 3sjm_A            4 MTTNITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW   55 (64)
T ss_dssp             ------CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence            4455567778999999999999999982   235678888777788888877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	4e-23
d1vpka1	120	d.131.1.1 (A:1-120) DNA polymerase III, beta subun	0.003

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.7 bits (217), Expect = 4e-23
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76
          T   KPR+ WT +LH++F+ AV  LG  ++A PK +L LM +  LT  ++ SHLQK+R+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	91.7
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	89.35

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=4.3e-27  Score=174.43  Aligned_cols=61  Identities=44%  Similarity=0.780  Sum_probs=57.3

Q ss_pred             ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248           18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ   79 (285)
Q Consensus        18 s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~   79 (285)
                      +.++|||++||+|||++||+||++||+ +.||||.|+++|+|++||+.||+|||||||+...
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999985 8999999999999999999999999999999753

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.19  Score=34.18  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=40.0

Q ss_pred             CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248           24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG   77 (285)
Q Consensus        24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~   77 (285)
                      ..+||+|=+..|++||...|.    .=..|-..|  |+=|..+|++|.++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999993    466777776  478999999999987554

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.35  E-value=0.44  Score=31.01  Aligned_cols=44  Identities=27%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248           26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY   74 (285)
Q Consensus        26 rWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY   74 (285)
                      .||++=+.+|++||...|   ...=+.|-+.|+  +=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G---~~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG---FGNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC---TTCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC---CccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998   223567777775  56899999998876