Citrus Sinensis ID: 023265

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccccccccccccccEEccccHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEccccEEEEccccccccEEEEHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHccccccEccccccccccccHHHEHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MDIFGALLMLRALsqapvsviqpvsgcgLAILSIFSHFYLKEVMNAVDWMGITLAGigtigvgaggeeqepssisifqlpWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVfleqgfptmlvpVCISIsiccsgtgfyyqtrglkhgRAIVVSTCAAVASIVTGVVAGMLAlgerlpsaptARFSLLLGWLLIMIGVVLLVSSsrlvrhfrwpsrrimksglvrtgsqrvkdsgpsavipaATLHQLITSTAKEKA
Flexible Loop (DISEMBL)
MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRlvrhfrwpsrrimksglvrtgsqrvkdsgpsavipaatlhqlitstakeka
Low Complexity Region (SEG)
MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMgitlagigtigvgaggEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRReqemiefevveeiiYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGvvllvsssrlvrHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Disordered region (IsUnstruct)
**IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG*****SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGL**********************************
Disordered Region (DISOPRED)
*DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG********SIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSR**********************************PA*T*************
Disordered Region (DISEMBL)
MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGL************PSAVIPAATLHQLI********
Disordered Region (DISPRO)
MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPS*******************GPSAVIPAA**HQLIT*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
224114565	359	predicted protein [Populus trichocarpa]	0.992	0.788	0.786	1e-127
224088802	332	predicted protein [Populus trichocarpa]	1.0	0.858	0.775	1e-124
255550079	344	conserved hypothetical protein [Ricinus	1.0	0.828	0.797	1e-117
356552374	343	PREDICTED: uncharacterized protein LOC10	1.0	0.830	0.762	1e-116
356564039	343	PREDICTED: uncharacterized protein LOC10	1.0	0.830	0.751	1e-114
356514649	338	PREDICTED: uncharacterized protein LOC10	1.0	0.843	0.771	1e-114
356507006	344	PREDICTED: uncharacterized protein LOC10	1.0	0.828	0.759	1e-114
22326741	344	uncharacterized protein [Arabidopsis tha	0.996	0.825	0.758	1e-112
357437377	343	hypothetical protein MTR_1g015820 [Medic	1.0	0.830	0.744	1e-111
449447136	344	PREDICTED: uncharacterized protein LOC10	1.0	0.828	0.762	1e-111

>gi|224114565|ref|XP_002332339.1| predicted protein [Populus trichocarpa] gi|222831906|gb|EEE70383.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/291 (78%), Positives = 261/291 (89%), Gaps = 8/291 (2%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           +DI GALLMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+GITLAGIGTI
Sbjct: 71  IDICGALLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWIGITLAGIGTI 130

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQE SS+SIFQLPWLAF+V++LFV+LNGWLR+ +HQRR  EM+++EVVEEIIY
Sbjct: 131 GVGAGGEEQEASSVSIFQLPWLAFLVALLFVVLNGWLRVYRHQRRAHEMMDYEVVEEIIY 190

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           GLESGILFGMASVISK+GFVFLEQGF  MLVP+C+SISICCS TGFYYQT+GLKHGRAIV
Sbjct: 191 GLESGILFGMASVISKMGFVFLEQGFSRMLVPICVSISICCSATGFYYQTQGLKHGRAIV 250

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           VSTCAAVASIVTGV+AGMLALGE+LPSAPTARFSLLLGWL I++GV+LLVSS+ L+RH  
Sbjct: 251 VSTCAAVASIVTGVLAGMLALGEQLPSAPTARFSLLLGWLFIVVGVILLVSSTWLLRHL- 309

Query: 241 WPSRRIMKSG------LVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 285
            P RR ++        L R+GS R+KDS P+AVI AATLH LI+S +KEKA
Sbjct: 310 -PLRRFIRINVDRNFSLSRSGSLRLKDSNPTAVIHAATLHHLISSPSKEKA 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088802|ref|XP_002308547.1| predicted protein [Populus trichocarpa] gi|222854523|gb|EEE92070.1| predicted protein [Populus trichocarpa]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/290 (77%), Positives = 253/290 (87%), Gaps = 5/290 (1%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           MDI GALLML+ALS APVSVIQPVSGCGLAILS+FSHFYLKEVMN +DWMGITLAGIGTI
Sbjct: 43  MDIIGALLMLKALSLAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWMGITLAGIGTI 102

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQE SSISI QLPWLA +V+ILFV+LNGWLR+ + QRR  E +++EVVEEIIY
Sbjct: 103 GVGAGGEEQEASSISILQLPWLALLVAILFVVLNGWLRMYRRQRRAHETMDYEVVEEIIY 162

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           GLESGILFGMASVISK+GFVFLEQGF  MLVP+C++ISICCS TGFYYQT+GLKHGRAIV
Sbjct: 163 GLESGILFGMASVISKMGFVFLEQGFSKMLVPLCLTISICCSATGFYYQTQGLKHGRAIV 222

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           +STCAAVASIVTGV+AGMLALGERLPSAP ARFSLLLGWLLI++GV+LLVSS+ L+RH  
Sbjct: 223 LSTCAAVASIVTGVLAGMLALGERLPSAPAARFSLLLGWLLIVVGVILLVSSTWLLRHLP 282

Query: 241 WPSRRIMKSG-----LVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 285
            P R    S      L R+GS R+KD  P+AVI AATLH LI+S +KEKA
Sbjct: 283 RPLRHFTSSADRNFSLSRSGSLRLKDPNPTAVIHAATLHHLISSPSKEKA 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550079|ref|XP_002516090.1| conserved hypothetical protein [Ricinus communis] gi|223544576|gb|EEF46092.1| conserved hypothetical protein [Ricinus communis]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/291 (79%), Positives = 259/291 (89%), Gaps = 6/291 (2%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           MDI GA+LMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+GITLAGIGTI
Sbjct: 54  MDICGAMLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWIGITLAGIGTI 113

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQE SSIS+FQLPWLAF+V++LF+ LNGWLR+CK +RREQE +E+EV+EEIIY
Sbjct: 114 GVGAGGEEQEVSSISVFQLPWLAFIVAVLFIGLNGWLRVCKRERREQETMEYEVIEEIIY 173

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           GLESGILFGMASVISK+ FVFLEQGF  MLVP+CISISIC S TGFYYQTRGLKHGRAIV
Sbjct: 174 GLESGILFGMASVISKMAFVFLEQGFSRMLVPICISISICSSATGFYYQTRGLKHGRAIV 233

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           VSTCAAVASIVTGV+AGMLALGERLPSAP AR SLLLGWLLI++GV+LLVSS+RL+R   
Sbjct: 234 VSTCAAVASIVTGVLAGMLALGERLPSAPAARLSLLLGWLLIIVGVILLVSSTRLLRQLP 293

Query: 241 WPSRRIMKS------GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 285
            P R +M+S       L R+GS RVKDS PSAVI  ATLHQLI++ AKEKA
Sbjct: 294 RPLRHLMRSKADWNFNLSRSGSIRVKDSNPSAVIQTATLHQLISTPAKEKA 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552374|ref|XP_003544543.1| PREDICTED: uncharacterized protein LOC100779611 [Glycine max]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/290 (76%), Positives = 254/290 (87%), Gaps = 5/290 (1%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           MDI GALLMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTI
Sbjct: 54  MDILGALLMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTI 113

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQE  ++SIF +P LAFVV ILF+LL+GWLRICK QRREQEM+E++VVEE+IY
Sbjct: 114 GVGAGGEEQEVVALSIFHIPGLAFVVFILFILLSGWLRICKCQRREQEMVEYDVVEEVIY 173

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           GLESGILFGM+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTGFYYQTRGLKHGRAIV
Sbjct: 174 GLESGILFGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGFYYQTRGLKHGRAIV 233

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           VSTCAAVASI+TGV+AGMLALGERLPS P AR +LLLGWLLI++GV+LLV S+RLVR   
Sbjct: 234 VSTCAAVASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLS 293

Query: 241 WPSRRIMKS-----GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 285
             S+R   +      L R  S RV+++ PSAVI AATL+ L++S++KEKA
Sbjct: 294 CSSQRKRSNVDKNFDLRRATSSRVRETSPSAVIQAATLNHLLSSSSKEKA 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564039|ref|XP_003550264.1| PREDICTED: uncharacterized protein LOC100819228 [Glycine max]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/290 (75%), Positives = 252/290 (86%), Gaps = 5/290 (1%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           +DIFGALLMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTI
Sbjct: 54  IDIFGALLMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTI 113

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQE  ++SIF +P LAF+V ILF+LL+GWLRICK QRREQEM+E++VVEE+IY
Sbjct: 114 GVGAGGEEQEVVALSIFHIPGLAFIVFILFILLSGWLRICKRQRREQEMMEYDVVEEVIY 173

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           G ESGILFGM+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTG YYQTRGLKHGRAIV
Sbjct: 174 GFESGILFGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGIYYQTRGLKHGRAIV 233

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           VSTCAAVASI+TGV+AGMLALGERLPS P AR +LLLGWLLI++GV+LLV S+RLVR   
Sbjct: 234 VSTCAAVASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLS 293

Query: 241 WPSRRIMKS-----GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 285
             SR+   +     GL    S RV++  PSAVI AATL+ L++S++KEKA
Sbjct: 294 CSSRQKRSNVEKNFGLRGATSSRVREPSPSAVIQAATLNHLLSSSSKEKA 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514649|ref|XP_003526017.1| PREDICTED: uncharacterized protein LOC100788141 [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/285 (77%), Positives = 255/285 (89%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           MDIFGALLMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTI
Sbjct: 54  MDIFGALLMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNIVDWVGITLAGFGTI 113

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIY
Sbjct: 114 GVGAGGEEQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIY 173

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           GLESGILFGMASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQTRGLKHGRAIV
Sbjct: 174 GLESGILFGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIV 233

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           VSTCAAVASI+TGV+AGMLALGERLPSAP AR  LLLGWLLI++GV+LLV S++LVR FR
Sbjct: 234 VSTCAAVASILTGVLAGMLALGERLPSAPKARLLLLLGWLLIIVGVILLVGSTKLVRFFR 293

Query: 241 WPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 285
           + S R    G  R+G+ RV++  P+AVI AATL+ L++S++KEKA
Sbjct: 294 FSSHRFKNYGPRRSGTSRVREPSPTAVIQAATLNHLLSSSSKEKA 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507006|ref|XP_003522263.1| PREDICTED: uncharacterized protein LOC100803982 [Glycine max]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/291 (75%), Positives = 257/291 (88%), Gaps = 6/291 (2%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           MDIFGALLMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTI
Sbjct: 54  MDIFGALLMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVVDWVGITLAGFGTI 113

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIY
Sbjct: 114 GVGAGGEEQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIY 173

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           GLESGILFGMASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQTRGLKHGRAIV
Sbjct: 174 GLESGILFGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIV 233

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           VSTCAAVASI+TGV+AGMLALGERLPSAP ARF LLLGWLLI++GV+LLV S++LVR FR
Sbjct: 234 VSTCAAVASILTGVLAGMLALGERLPSAPKARFLLLLGWLLIIVGVILLVGSTKLVRFFR 293

Query: 241 WPSRRIMKS------GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 285
           + S    +S      G  R+G+ RV++  P+AVI AATL+ L++S++KEKA
Sbjct: 294 FSSHHFKRSSVDKNYGPRRSGTSRVREPSPTAVIQAATLNHLLSSSSKEKA 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326741|ref|NP_196757.2| uncharacterized protein [Arabidopsis thaliana] gi|20260356|gb|AAM13076.1| putative protein [Arabidopsis thaliana] gi|22136174|gb|AAM91165.1| putative protein [Arabidopsis thaliana] gi|332004362|gb|AED91745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/290 (75%), Positives = 248/290 (85%), Gaps = 6/290 (2%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           MDI GALLMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTI
Sbjct: 54  MDIVGALLMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTI 113

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIY
Sbjct: 114 GVGAGGEEQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIY 173

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           GLESGILFGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQTRGLKHGRAIV
Sbjct: 174 GLESGILFGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIV 233

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           VSTCAAVASIVTGVVAGM ALGE+LP++P+ R  LLLGWLLIM+GVVLLV+SSRL+RH  
Sbjct: 234 VSTCAAVASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLP 293

Query: 241 WPSRRIMKSGLV------RTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 284
              RR  ++ L       RT S   KD+ PSAVI AATLH L++S +K+K
Sbjct: 294 RSFRRSRQTSLERGFNIRRTTSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437377|ref|XP_003588964.1| hypothetical protein MTR_1g015820 [Medicago truncatula] gi|355478012|gb|AES59215.1| hypothetical protein MTR_1g015820 [Medicago truncatula]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/290 (74%), Positives = 251/290 (86%), Gaps = 5/290 (1%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           MDIFGALLMLRALS APVSVIQPVSGCGLAILSIFSHFYL+EVMN VDW+GITLAG GTI
Sbjct: 54  MDIFGALLMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLQEVMNVVDWVGITLAGFGTI 113

Query: 61  GVGAGGEEQ-EPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEII 119
           GVGAGGEEQ E  ++SIF +PWLAFVVSILF+LLNGWLRI K QRREQEM+E++VVEEII
Sbjct: 114 GVGAGGEEQQEMVALSIFHIPWLAFVVSILFILLNGWLRIYKRQRREQEMMEYDVVEEII 173

Query: 120 YGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAI 179
           YGLESGILFGM+SVISK+GF+FLEQGFP +LVP+C+ IS+ CSG GFYYQTRGLKHGRAI
Sbjct: 174 YGLESGILFGMSSVISKMGFLFLEQGFPKILVPICLLISVSCSGIGFYYQTRGLKHGRAI 233

Query: 180 VVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHF 239
           +VSTCAAVASI+TGV+AGMLALGERLPSAP AR +LLLGWLLI+ GV+LLV S+RL+R  
Sbjct: 234 IVSTCAAVASILTGVLAGMLALGERLPSAPKARLALLLGWLLIITGVILLVGSTRLLRFI 293

Query: 240 RWPSRRI---MKSGLVRTGSQRVKDSGP-SAVIPAATLHQLITSTAKEKA 285
               +R       G  R+ + RV++  P SAVI A+TL+ L++S++KEKA
Sbjct: 294 TSRQKRSNMEKNYGPRRSTTSRVREPSPNSAVIQASTLNHLLSSSSKEKA 343

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447136|ref|XP_004141325.1| PREDICTED: uncharacterized protein LOC101210517 [Cucumis sativus] gi|449486673|ref|XP_004157364.1| PREDICTED: uncharacterized protein LOC101228106 [Cucumis sativus]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/291 (76%), Positives = 250/291 (85%), Gaps = 6/291 (2%)

Query: 1   MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
           MDIFGA+LMLRALS APVS+IQPVSGCGLAILSIFSHFYLKE+MN VDWMGI LAGIGTI
Sbjct: 54  MDIFGAVLMLRALSLAPVSIIQPVSGCGLAILSIFSHFYLKEIMNVVDWMGIMLAGIGTI 113

Query: 61  GVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY 120
           GVGAGGEEQ+ S+IS+F LPWLAF+++ILFVLLNGWL   K QRREQE++EFEVVEEIIY
Sbjct: 114 GVGAGGEEQKASAISVFHLPWLAFIMTILFVLLNGWLHFYKRQRREQELMEFEVVEEIIY 173

Query: 121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
           GLESGILFGMASVISK+GF+FLEQGF  +LVP+CI ISICCS TGFYYQTRGLKHGRAIV
Sbjct: 174 GLESGILFGMASVISKMGFLFLEQGFHQILVPICILISICCSATGFYYQTRGLKHGRAIV 233

Query: 181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFR 240
           VSTCAAVASIVTGV+AGMLALGE LPS+PT R  LLLGWLLI+IGV+LLVSSSRL+R   
Sbjct: 234 VSTCAAVASIVTGVLAGMLALGEELPSSPTGRLFLLLGWLLIIIGVILLVSSSRLIRRLT 293

Query: 241 WPSRRIMKSGLV-----RTGSQ-RVKDSGPSAVIPAATLHQLITSTAKEKA 285
           W  RR  +SG+      R+GS  R++DS PSA+I   TL  L++S AK  A
Sbjct: 294 WLYRRFKRSGVDRNFGHRSGSAVRLRDSSPSAIIQTTTLQNLLSSKAKADA 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2143044	344	AT5G11960 "AT5G11960" [Arabido	0.996	0.825	0.634	4.6e-89

TAIR|locus:2143044 AT5G11960 "AT5G11960" [Arabidopsis thaliana (taxid:3702)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 184/290 (63%), Positives = 209/290 (72%)

Query:     1 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMXXXXXXXXXX 60
             MDI GALLMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+          
Sbjct:    54 MDIVGALLMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTI 113

Query:    61 XXXXXXEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRRXXXXXXXXXXXXXXY 120
                   EEQE S IS+FQL WLA VV+ILFVLLN WL I K QRR              Y
Sbjct:   114 GVGAGGEEQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIY 173

Query:   121 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIV 180
             GLESGILFGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQTRGLKHGRAIV
Sbjct:   174 GLESGILFGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIV 233

Query:   181 VSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGXXXXXXXXXXXXH-- 238
             VSTCAAVASIVTGVVAGM ALGE+LP++P+ R  LLLGWLLIM+G            H  
Sbjct:   234 VSTCAAVASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLP 293

Query:   239 --FRWPSRRIMKSG--LVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 284
               FR   +  ++ G  + RT S   KD+ PSAVI AATLH L++S +K+K
Sbjct:   294 RSFRRSRQTSLERGFNIRRTTSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      285       243   0.00097  113 3  11 22  0.47    32
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  172 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.99u 0.09s 18.08t   Elapsed:  00:00:01
  Total cpu time:  17.99u 0.09s 18.08t   Elapsed:  00:00:01
  Start:  Thu May  9 16:52:35 2013   End:  Thu May  9 16:52:36 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_207000001 hypothetical protein (359 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
COG2510	140	COG2510, COG2510, Predicted membrane protein [Func	0.002

>gnl|CDD|225308 COG2510, COG2510, Predicted membrane protein [Function unknown]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 5   GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60
             LL  RAL +   S + P+    + +  + S  +L E ++   W+GI L  IG I
Sbjct: 80  SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAI 135

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.62
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.22
PRK15430	296	putative chloramphenical resistance permease RarD;	99.15
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.15
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.1
PRK11689	295	aromatic amino acid exporter; Provisional	99.05
PLN00411	358	nodulin MtN21 family protein; Provisional	99.04
PRK11272	292	putative DMT superfamily transporter inner membran	98.97
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.8
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.7
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.62
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.61
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.51
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.4
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.4
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.36
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.1
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.92
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.74
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.67
COG2510	140	Predicted membrane protein [Function unknown]	97.54
COG2510	140	Predicted membrane protein [Function unknown]	97.28
COG2962	293	RarD Predicted permeases [General function predict	97.25
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.14
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.1
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.09
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	96.9
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.55
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.54
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.35
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.2
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.08
PF13536	113	EmrE: Multidrug resistance efflux transporter	95.95
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	95.91
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.85
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	95.62
PRK11431	105	multidrug efflux system protein; Provisional	95.27
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.14
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.61
PRK09541	110	emrE multidrug efflux protein; Reviewed	94.45
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	93.78
COG2076	106	EmrE Membrane transporters of cations and cationic	93.63
PRK10532	293	threonine and homoserine efflux system; Provisiona	93.57
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	92.86
PRK11689	295	aromatic amino acid exporter; Provisional	92.79
PRK10650	109	multidrug efflux system protein MdtI; Provisional	92.42
COG2076	106	EmrE Membrane transporters of cations and cationic	91.71
PRK11431	105	multidrug efflux system protein; Provisional	91.69
PRK11272	292	putative DMT superfamily transporter inner membran	91.52
PRK15430	296	putative chloramphenical resistance permease RarD;	90.66
KOG4510	346	consensus Permease of the drug/metabolite transpor	90.59
KOG3912	372	consensus Predicted integral membrane protein [Gen	90.29
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	90.27
COG0697	292	RhaT Permeases of the drug/metabolite transporter	90.12
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	88.1
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	87.92
COG2962	293	RarD Predicted permeases [General function predict	86.09
PLN00411	358	nodulin MtN21 family protein; Provisional	85.28
KOG2765	416	consensus Predicted membrane protein [Function unk	84.44
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	84.18
PRK13499	345	rhamnose-proton symporter; Provisional	83.28
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	83.25

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.62  E-value=8.4e-16  Score=144.49  Aligned_cols=220  Identities=20%  Similarity=0.303  Sum_probs=151.6

Q ss_pred             hHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCcccch---
Q 023265            2 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISIF---   77 (285)
Q Consensus         2 ~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~-~~~~~~~~~~~~~~---   77 (285)
                      +++|..++.+|++++|.++|||+.+.++++..+++++++|||++++||.|..++..|..++. .++++++..+....   
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~  139 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIAL  139 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999998754 33333322222111   


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc---cCcCccch-
Q 023265           78 --QLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE---QGFPTMLV-  151 (285)
Q Consensus        78 --~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~---~g~~~l~~-  151 (285)
                        ++.............+.......+|.+++         ..+.|...+++..+++-..+|.....+.   +|...... 
T Consensus       140 ~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~---------~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~  210 (300)
T PF05653_consen  140 LSQPGFLVYFILVLVLILILIFFIKPRYGRR---------NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYP  210 (300)
T ss_pred             hcCcceehhHHHHHHHHHHHHHhhcchhccc---------ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhh
Confidence              11111111111111122122222221211         2466788888887887778887554332   23332222 


Q ss_pred             -hHH-HHHHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHH
Q 023265          152 -PVC-ISISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL  228 (285)
Q Consensus       152 -~~~-ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~  228 (285)
                       +|. +...+.+.....++.|+|++..+.. ...|. -+.=...+++-|.+.+.|--+.+++..+....|+..++.|+.+
T Consensus       211 ~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~-~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~l  289 (300)
T PF05653_consen  211 LTYLLLLVLVVTAVLQLYYLNKALKRFDTS-LVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFL  289 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccce-EEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhe
Confidence             232 2335567788899999999999953 34455 6666677899999999999999999899999999999999988


Q ss_pred             Hhh
Q 023265          229 LVS  231 (285)
Q Consensus       229 L~~  231 (285)
                      +..
T Consensus       290 L~~  292 (300)
T PF05653_consen  290 LSS  292 (300)
T ss_pred             eec
Confidence            863

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.22  E-value=7.2e-10  Score=102.19  Aligned_cols=205  Identities=17%  Similarity=0.188  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHH
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWL   82 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~   82 (285)
                      ...+.+...|+.++|.+.++|+..++-+++.+++..++|||+++++|.|+.++..|+..+...+.++  .......+   
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~--~~~~g~~~---  148 (281)
T TIGR03340        74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ--HRRKAYAW---  148 (281)
T ss_pred             HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc--cchhHHHH---
Confidence            3556788889999999999999999999999999999999999999999999999998764322111  11111111   


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCcC-ccchhH-HHHHHH
Q 023265           83 AFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGFP-TMLVPV-CISISI  159 (285)
Q Consensus        83 ~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG-~~fG~~A~l~K~~~~~~~~g~~-~l~~~~-~ly~~i  159 (285)
                      .+   +...+........|+...+.+. .........++...+ +.+...... +   +  ++.+. .....+ ..|...
T Consensus       149 ~l---~aal~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~  218 (281)
T TIGR03340       149 AL---AAALGTAIYSLSDKAAALGVPA-FYSALGYLGIGFLAMGWPFLLLYLK-R---H--GRSMFPYARQILPSATLGG  218 (281)
T ss_pred             HH---HHHHHHHHhhhhccccccchhc-ccccHHHHHHHHHHHHHHHHHHHHH-H---h--ccchhhhHHHHHHHHHHHH
Confidence            11   1112222233334443221110 000001111111111 222221110 0   0  00010 011222 256777


Q ss_pred             HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265          160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  229 (285)
Q Consensus       160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L  229 (285)
                      .++..+++++.+++|..++..++. ..-.+|+.++++|+.+|||++...      +..|..+++.|+.++
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~-~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVA-LRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEe-ecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHhC
Confidence            888999999999999988533332 256699999999999999999764      457777888887653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.15  E-value=8.9e-09  Score=95.81  Aligned_cols=200  Identities=10%  Similarity=0.054  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHH
Q 023265            4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA   83 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~   83 (285)
                      ..+.+...|+.+.|.+.+.-+..+.=+++.+++..++|||+++++|.++.++.+|+.++...+. +    ..   +  ..
T Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~----~~---~--~~  154 (296)
T PRK15430         85 GNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-S----LP---I--IA  154 (296)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C----cc---H--HH
Confidence            4577888999999999999999999999999999999999999999999999999997642111 1    11   1  11


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcC----ccchhHH-HHHH
Q 023265           84 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFP----TMLVPVC-ISIS  158 (285)
Q Consensus        84 ~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~----~l~~~~~-ly~~  158 (285)
                      +..   ....+......||...+..   +.......+-...+..+.+      ..   .+.+..    .....+. ++..
T Consensus       155 l~a---a~~~a~~~i~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~  219 (296)
T PRK15430        155 LGL---AFSFAFYGLVRKKIAVEAQ---TGMLIETMWLLPVAAIYLF------AI---ADSSTSHMGQNPMSLNLLLIAA  219 (296)
T ss_pred             HHH---HHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHHHHHHHH------HH---ccCCcccccCCcHHHHHHHHHH
Confidence            111   1223333333444322111   0111111222222222211      00   011111    0111122 3333


Q ss_pred             HHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023265          159 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRL  235 (285)
Q Consensus       159 i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s~~~  235 (285)
                      ..++..+++++++++|.-++..++.. +..||+.++.+|++++||+++..      +..|..+++.++.+...+...
T Consensus       220 g~~t~i~~~~~~~a~~~~~a~~~s~~-~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~~~~~  289 (296)
T PRK15430        220 GIVTTVPLLCFTAAATRLRLSTLGFF-QYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVMDAIY  289 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            44677999999999999996544433 78899999999999999999765      457777887777777665543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.15  E-value=6.5e-09  Score=96.75  Aligned_cols=207  Identities=17%  Similarity=0.161  Sum_probs=119.7

Q ss_pred             HHHHHhccC-CeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHHHHH
Q 023265            8 LMLRALSQA-PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVV   86 (285)
Q Consensus         8 lq~~AL~~g-plsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~v   86 (285)
                      +...++.++ |.....-+..+.=+++.+++.+++|||+++++|.+..++.+|+..+...+.+..  ..   .+ ...+..
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~--~~---~~-~G~~l~  148 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ--HV---AM-LGFMLT  148 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc--ch---hH-HHHHHH
Confidence            445566664 666666677777789999999999999999999999999999987643221111  11   11 112222


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhccCcC--ccchhH-HHHHHHHHH
Q 023265           87 SILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY-GLESGILFGMASVISKLGFVFLEQGFP--TMLVPV-CISISICCS  162 (285)
Q Consensus        87 ~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~-G~aaG~~fG~~A~l~K~~~~~~~~g~~--~l~~~~-~ly~~i~~~  162 (285)
                      ....+.........|+..++...  ........+ .+.+++.+...+........ ....+.  ....++ -+|..+.++
T Consensus       149 l~aal~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~i~~t  225 (299)
T PRK11453        149 LAAAFSWACGNIFNKKIMSHSTR--PAVMSLVVWSALIPIIPFFVASLILDGSAT-MIHSLVTIDMTTILSLMYLAFVAT  225 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCc--cchhHHHHHHHHHHHHHHHHHHHHhcCchh-hhhhhccCCHHHHHHHHHHHHHHH
Confidence            22233344444445554321100  001111111 12222222222211110000 000011  111222 258889999


Q ss_pred             HHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          163 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       163 ~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      ..+++++.+++|.-++..++. ....+|++++++|+.++||++...      +.+|..+++.|+.+..
T Consensus       226 ~~~~~l~~~~l~~~~a~~~s~-~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        226 IVGYGIWGTLLGRYETWRVAP-LSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            999999999998777544443 367899999999999999999664      4477777777776544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.10  E-value=1.8e-08  Score=90.71  Aligned_cols=199  Identities=16%  Similarity=0.094  Sum_probs=121.0

Q ss_pred             HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHH
Q 023265            4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA   83 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~   83 (285)
                      +.+.+...|+.+.|.+.+.++..+.=+++++++..++|||+++++|.++.++.+|+..+...++.+ ..    ..   ..
T Consensus        59 l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~-~~----~~---G~  130 (260)
T TIGR00950        59 VFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLS-IN----PA---GL  130 (260)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCccc-cc----HH---HH
Confidence            455677889999999999999999999999999999999999999999999999998865333211 11    11   11


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccc-hh-HHHHHHHHH
Q 023265           84 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTML-VP-VCISISICC  161 (285)
Q Consensus        84 ~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~-~~-~~ly~~i~~  161 (285)
                      .................|+...+.+...   .....+....|..+-+      ......++...... ++ +.+|..+.+
T Consensus       131 ~~~l~a~~~~a~~~~~~k~~~~~~~~~~---~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       131 LLGLGSGISFALGTVLYKRLVKKEGPEL---LQFTGWVLLLGALLLL------PFAWFLGPNPQALSLQWGALLYLGLIG  201 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhcCCchH---HHHHHHHHHHHHHHHH------HHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence            1112222233333334454443221000   0000011111211111      11111111111111 22 235667777


Q ss_pred             HHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHH
Q 023265          162 SGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGV  226 (285)
Q Consensus       162 ~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gv  226 (285)
                      +..++.++.++++..++..++.. ...+|+.++++++.++||+++..      +..|..+++.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASIL-ALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            88999999999999996555443 68899999999999999999763      335555555443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.05  E-value=2.7e-08  Score=92.51  Aligned_cols=189  Identities=14%  Similarity=0.145  Sum_probs=110.0

Q ss_pred             CeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCC-CC-C--CcccchhhHHHHHHHHHHHHH
Q 023265           17 PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE-QE-P--SSISIFQLPWLAFVVSILFVL   92 (285)
Q Consensus        17 plsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~-~~-~--~~~~~~~~~~~~~~v~~~~v~   92 (285)
                      |-..+.-+..+.=+|+.+++..++|||+++++|.++.++.+|+.++..++.+ +. +  +.... .. ...+.......+
T Consensus        90 ~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~-~~-~G~~~~l~aa~~  167 (295)
T PRK11689         90 QAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIAS-NP-LSYGLAFIGAFI  167 (295)
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcccc-Ch-HHHHHHHHHHHH
Confidence            3333444556667788899999999999999999999999999876532211 00 0  00000 11 112222222334


Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccch---hH-HHHHHHHHHHHHHHH
Q 023265           93 LNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLV---PV-CISISICCSGTGFYY  168 (285)
Q Consensus        93 l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~---~~-~ly~~i~~~~~G~~l  168 (285)
                      .+......||.+++.+..      ...+ ...++.+-....        .++......+   +. -+|.. .++..++++
T Consensus       168 ~A~~~v~~k~~~~~~~~~------~~~~-~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l  231 (295)
T PRK11689        168 WAAYCNVTRKYARGKNGI------TLFF-ILTALALWIKYF--------LSPQPAMVFSLPAIIKLLLAA-AAMGFGYAA  231 (295)
T ss_pred             HHHHHHHHhhccCCCCch------hHHH-HHHHHHHHHHHH--------HhcCccccCCHHHHHHHHHHH-HHHHHHHHH
Confidence            444455566665332211      1111 112222111111        1111111111   21 23444 478889999


Q ss_pred             HhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          169 QTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       169 qq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      |++++|..++..++.. +..+|++++++|+.++||+++..      +..|.++++.|+.+..
T Consensus       232 ~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        232 WNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            9999999996555443 68899999999999999999764      4477777777776654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.04  E-value=6.3e-08  Score=93.34  Aligned_cols=209  Identities=17%  Similarity=0.173  Sum_probs=125.2

Q ss_pred             HHHHHhccCCeeeehhhhhHHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHHhhcc-CCCC------------
Q 023265            8 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA-GGEE------------   68 (285)
Q Consensus         8 lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~------~~~rl~~~ew~~v~l~~~Gl~~l~~-~~~~------------   68 (285)
                      ++..++.+-|-+..-=+..+.=+|+.++++++      +|||+++++|.|+.++.+|+.++.. .+..            
T Consensus        94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~  173 (358)
T PLN00411         94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF  173 (358)
T ss_pred             HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence            56677788787777777778888999999999      6999999999999999999987532 2210            


Q ss_pred             --CC-CCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccC
Q 023265           69 --QE-PSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQG  145 (285)
Q Consensus        69 --~~-~~~~~~~~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g  145 (285)
                        .. ........+.+..++.....++...+..+.+|..++.  +... .....+.+..++.+...+...... + . ..
T Consensus       174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~--~~~~-~~t~~~~~~~~~~~~~~~l~~~~~-~-~-~~  247 (358)
T PLN00411        174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY--PAAF-TVSFLYTVCVSIVTSMIGLVVEKN-N-P-SV  247 (358)
T ss_pred             cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CcHh-HHHHHHHHHHHHHHHHHHHHHccC-C-c-cc
Confidence              00 0011122333334444433444444545455443221  1100 111223444444444333321100 0 0 11


Q ss_pred             cCccchh---HHHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 023265          146 FPTMLVP---VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLI  222 (285)
Q Consensus       146 ~~~l~~~---~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~i  222 (285)
                      |...++.   ..+|..++ +.++|++|+++.+.-++..++.. ...+|++++++|+++|||++...      +.+|.+++
T Consensus       248 ~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LI  319 (358)
T PLN00411        248 WIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLYLG------CLIGGILI  319 (358)
T ss_pred             ceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHH
Confidence            1111111   13465554 56799999999987776555433 68899999999999999999765      45788888


Q ss_pred             HHHHHHHh
Q 023265          223 MIGVVLLV  230 (285)
Q Consensus       223 v~Gvv~L~  230 (285)
                      +.|+.+..
T Consensus       320 l~Gv~l~~  327 (358)
T PLN00411        320 TLGFYAVM  327 (358)
T ss_pred             HHHHHHHH
Confidence            88886654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.97  E-value=1.3e-07  Score=87.80  Aligned_cols=196  Identities=15%  Similarity=0.106  Sum_probs=119.2

Q ss_pred             HHHHHHHh-ccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHHH
Q 023265            6 ALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF   84 (285)
Q Consensus         6 ~~lq~~AL-~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~   84 (285)
                      +.+...+. .+.|.....-+..+.=+++.+++.. +|||+++++|.+..++.+|+..+...++.+ .+.     +  ..+
T Consensus        83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~-~~~-----~--G~l  153 (292)
T PRK11272         83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLS-GNP-----W--GAI  153 (292)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccc-cch-----H--HHH
Confidence            45566677 7788887888888888899999875 799999999999999999988764322211 111     1  111


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCcCcc---chh-HHHHHHH
Q 023265           85 VVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGFPTM---LVP-VCISISI  159 (285)
Q Consensus        85 ~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG-~~fG~~A~l~K~~~~~~~~g~~~l---~~~-~~ly~~i  159 (285)
                      .......+.+......||..++..      .....+....| .......       ...++.+...   .++ +-.|..+
T Consensus       154 ~~l~a~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~i  220 (292)
T PRK11272        154 LILIASASWAFGSVWSSRLPLPVG------MMAGAAEMLAAGVVLLIAS-------LLSGERLTALPTLSGFLALGYLAV  220 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcc------hHHHHHHHHHHHHHHHHHH-------HHcCCcccccCCHHHHHHHHHHHH
Confidence            111222233333444455432111      11112222222 1111111       1111122111   122 2257778


Q ss_pred             HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      .++..++++++++.|..++..++.. ...||+.++++|+.++||++...      +..|.++++.|+..+.
T Consensus       221 ~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        221 FGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            8899999999999999986444432 68899999999999999998653      4577778888887664

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.80  E-value=8.4e-07  Score=82.48  Aligned_cols=70  Identities=17%  Similarity=0.151  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          154 CISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       154 ~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      .+|..++++..+++++++++|.-++..++.. +..||++++++|+++|||+++..      +.+|.++++.|++...
T Consensus       211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        211 GLAVAILSTALPYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            3688899999999999999999986555443 78899999999999999998664      4577777777776664

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.70  E-value=7.1e-07  Score=82.93  Aligned_cols=208  Identities=15%  Similarity=0.137  Sum_probs=116.6

Q ss_pred             HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHH
Q 023265            4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA   83 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~   83 (285)
                      ....++-.++.+-+.+..|=+..+.-+|+.+++.+++|||+++++|.+..++.+|+++.+. ++.+    ..   + ...
T Consensus        77 ~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~-~~~~----~~---~-~G~  147 (302)
T TIGR00817        77 IGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD-TELS----FN---W-AGF  147 (302)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC-Cccc----cc---H-HHH
Confidence            4567889999999999999999999999999999999999999999999999999976532 1111    11   1 111


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhhccCcCc---cchhHHHH-HH
Q 023265           84 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILF-GMASVISKLGFVFLEQGFPT---MLVPVCIS-IS  158 (285)
Q Consensus        84 ~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~f-G~~A~l~K~~~~~~~~g~~~---l~~~~~ly-~~  158 (285)
                      +...+.....+......||..+..+   +...+-..+....|..+ ...+..... .....+++..   ..++..+| ..
T Consensus       148 ~~~l~a~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~l~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       148 LSAMISNITFVSRNIFSKKAMTIKS---LDKTNLYAYISIMSLFLLSPPAFITEG-PPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCC---CCcccHHHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHhhcccCchHHHHHH
Confidence            1122222233333334455433101   11112223322222221 111111110 0000000000   01111112 12


Q ss_pred             HHHHHHHHHHH----hhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265          159 ICCSGTGFYYQ----TRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  231 (285)
Q Consensus       159 i~~~~~G~~lq----q~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~  231 (285)
                      +.++...+.++    ..+.+.=++..++.. ...+|++++++|+.+|||++...      +.+|.++++.|+.....
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            23333333333    356666555444443 78899999999999999998764      45777788888866553

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.62  E-value=6.8e-06  Score=78.75  Aligned_cols=208  Identities=13%  Similarity=0.131  Sum_probs=120.3

Q ss_pred             HHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHHHH
Q 023265            6 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFV   85 (285)
Q Consensus         6 ~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~   85 (285)
                      +..+..++++.+++..|=+-+++=+|+++++.+++|||++++.|.++.+.++|+++... +|.+    .   .+ +..+.
T Consensus       128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~-~~~~----~---~~-~G~~~  198 (350)
T PTZ00343        128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV-KELH----F---TW-LAFWC  198 (350)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec-ccch----h---HH-HHHHH
Confidence            34455899999999999999999999999999999999999999999999999998643 2211    1   11 11222


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHH-H---HHhHhhhc--cCcCccchhHHHHH
Q 023265           86 VSILFVLLNGWLRICKHQRREQEMI--EFEVVEEIIYGLESGILFGMASVI-S---KLGFVFLE--QGFPTMLVPVCISI  157 (285)
Q Consensus        86 v~~~~v~l~~~~~~~~r~r~~~~~~--~~~~~~a~l~G~aaG~~fG~~A~l-~---K~~~~~~~--~g~~~l~~~~~ly~  157 (285)
                      ..+..+..+......|+..++.+..  .+....-..+....|.++-+--.. .   +......+  ..+.......-+| 
T Consensus       199 ~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-  277 (350)
T PTZ00343        199 AMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-  277 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-
Confidence            2222223333333444433211100  001111111112222222211111 1   10000000  0111111112234 


Q ss_pred             HHHHHHHHHHHHhh----hhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          158 SICCSGTGFYYQTR----GLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       158 ~i~~~~~G~~lqq~----al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      .+.++.+.+++++.    +++.=++...+. ++..+|++++++|+.+|||++...      +.+|.++++.|+.+..
T Consensus       278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv-~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAV-ANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHh
Confidence            46677778888774    777766544443 367899999999999999998764      4578888888887654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.61  E-value=1.2e-05  Score=72.11  Aligned_cols=203  Identities=22%  Similarity=0.252  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHH
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPW   81 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa-~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~   81 (285)
                      ..+..+...++..-|....+++..+.-+++.+++. +++|||+++++|.+..+...|+.++...+..+...     .+ .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~-----~~-~  154 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL-----SL-L  154 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH-----HH-H
Confidence            35567778889999999999999999999999997 77799999999999988999999876444332111     11 0


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccc-hh-HHHHHHH
Q 023265           82 LAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTML-VP-VCISISI  159 (285)
Q Consensus        82 ~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~-~~-~~ly~~i  159 (285)
                      ............+......++.. +..     ......+     ..+.....+.-. ....+.+..... .+ ...+..+
T Consensus       155 g~~~~l~a~~~~a~~~~~~~~~~-~~~-----~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~  222 (292)
T COG0697         155 GLLLALAAALLWALYTALVKRLS-RLG-----PVTLALL-----LQLLLALLLLLL-FFLSGFGAPILSRAWLLLLYLGV  222 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CCC-----hHHHHHH-----HHHHHHHHHHHH-HHhccccccCCHHHHHHHHHHHH
Confidence            11111111122222222333332 110     1111111     111100001111 111111112222 22 2245556


Q ss_pred             HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      ..+..+++++.++++..+...++ +.+..+|+.+..+++.++||+.+..      +..|.++++.|+....
T Consensus       223 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         223 FSTGLAYLLWYYALRLLGASLVA-LLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHH-HHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            66668999999999999853332 2358899999999999999999774      3466666666666554

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.51  E-value=1e-05  Score=77.64  Aligned_cols=63  Identities=19%  Similarity=0.299  Sum_probs=59.5

Q ss_pred             ChHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            1 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         1 ~~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      +|+.|--+...|+.+-+++-+|=+-..+.+|++++|..++|+|.++.+|.|+.+|..|++++.
T Consensus        88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~  150 (334)
T PF06027_consen   88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV  150 (334)
T ss_pred             HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence            477888899999999999999999999999999999999999999999999999999999764

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00688 rarD rarD protein

Probab=98.40  E-value=3e-05  Score=70.24  Aligned_cols=172  Identities=10%  Similarity=0.045  Sum_probs=101.0

Q ss_pred             HHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHHH
Q 023265            5 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF   84 (285)
Q Consensus         5 G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~   84 (285)
                      ...+...|+.+.|++...-+..+.=+|+.+++++++|||+++++|.++.+..+|+..+..++.+     ..   +  .++
T Consensus        83 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~-----~~---~--~~l  152 (256)
T TIGR00688        83 NWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGS-----LP---W--EAL  152 (256)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC-----ch---H--HHH
Confidence            4567788999999998888888899999999999999999999999999999999865322111     11   1  122


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc-cCcCccchhHHHHHHHHHHH
Q 023265           85 VVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE-QGFPTMLVPVCISISICCSG  163 (285)
Q Consensus        85 ~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~-~g~~~l~~~~~ly~~i~~~~  163 (285)
                      +.   ..+.+......||.++...       .....+...-..+.....+..   +... +.+...-.+..++....++.
T Consensus       153 ~a---a~~~a~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~t~  219 (256)
T TIGR00688       153 VL---AFSFTAYGLIRKALKNTDL-------AGFCLETLSLMPVAIYYLLQT---DFATVQQTNPFPIWLLLVLAGLITG  219 (256)
T ss_pred             HH---HHHHHHHHHHHhhcCCCCc-------chHHHHHHHHHHHHHHHHHHh---ccCcccccCchhHHHHHHHHHHHHH
Confidence            11   2233333334555443210       111111111111111000000   0000 00011112222333344688


Q ss_pred             HHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHH
Q 023265          164 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLA  200 (285)
Q Consensus       164 ~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~v  200 (285)
                      .++++++++++.-++..++ +....||++++.+|..+
T Consensus       220 i~~~l~~~a~~~~~a~~~s-~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       220 TPLLAFVIAANRLPLNLLG-LLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHcCChHHHH-HHHHHHHHHHHHHHHHh
Confidence            9999999999999964443 33788999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=6.9e-07  Score=84.47  Aligned_cols=214  Identities=18%  Similarity=0.300  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCccc-chh--
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSIS-IFQ--   78 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~-~~~~~~~~~~~~-~~~--   78 (285)
                      ++|=.+.-+|.+++|-++|-|++++++++.++++++++||+++..+..|..+|++|..++. .++++++..+.- .++  
T Consensus        75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~  154 (335)
T KOG2922|consen   75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELA  154 (335)
T ss_pred             HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHh
Confidence            4677788899999999999999999999999999999999999999999999999998764 445554432111 111  


Q ss_pred             --hH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---ccCcCccc
Q 023265           79 --LP---WLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFL---EQGFPTML  150 (285)
Q Consensus        79 --~~---~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~---~~g~~~l~  150 (285)
                        +.   +..+.+. .++.+...  ...|...         .--+.|...+++.=.++-..+|..-..+   -+|...+.
T Consensus       155 ~~~~Fliy~~~iil-~~~il~~~--~~p~~g~---------tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~  222 (335)
T KOG2922|consen  155 TEPGFLVYVIIIIL-IVLILIFF--YAPRYGQ---------TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLF  222 (335)
T ss_pred             cCccHHHHHHHHHH-HHHHHhee--ecccccc---------cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccc
Confidence              11   1112111 11111111  1111111         1235666666665333333466533222   24444443


Q ss_pred             hh---HHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHH
Q 023265          151 VP---VCISISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGV  226 (285)
Q Consensus       151 ~~---~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gv  226 (285)
                      .|   ..+...+.|...-..+.|+|++.=+. ....|. -+.--...++.|...|-|=-+.+......++.|...+..|+
T Consensus       223 ~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fnt-slV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~  301 (335)
T KOG2922|consen  223 YPLTWIFLLVVATCVSTQMNYLNKALDLFNT-SIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGI  301 (335)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhee
Confidence            33   23344566777778888999997774 333444 55666668999999999999998888888888888888888


Q ss_pred             HHH
Q 023265          227 VLL  229 (285)
Q Consensus       227 v~L  229 (285)
                      .++
T Consensus       302 flL  304 (335)
T KOG2922|consen  302 FLL  304 (335)
T ss_pred             eEe
Confidence            766

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.36  E-value=1.8e-05  Score=73.93  Aligned_cols=210  Identities=14%  Similarity=0.173  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHHhhccCCCCCCC-Ccccch
Q 023265            4 FGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAGGEEQEP-SSISIF   77 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~e----w~~v~l~~~Gl~~l~~~~~~~~~-~~~~~~   77 (285)
                      .|..++..|.+...+++-.|+.. .++++..+.+..++||+.++++    +.++.++.+|.+++...++++.. ++....
T Consensus        71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~  150 (290)
T TIGR00776        71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNF  150 (290)
T ss_pred             hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccch
Confidence            45588999999999999999999 9999999999999999999999    77888888997776532222111 110111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccchhHHHHH
Q 023265           78 QLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISI  157 (285)
Q Consensus        78 ~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~ly~  157 (285)
                      .-.  .+......+.........++...    ..+   . ..+=..-|+.++-.-.....  . ..+.+. .-+.+....
T Consensus       151 ~~G--i~~~l~sg~~y~~~~~~~~~~~~----~~~---~-~~~~~~~g~~~~~~~~~~~~--~-~~~~~~-~~~~~~~~~  216 (290)
T TIGR00776       151 KKG--ILLLLMSTIGYLVYVVVAKAFGV----DGL---S-VLLPQAIGMVIGGIIFNLGH--I-LAKPLK-KYAILLNIL  216 (290)
T ss_pred             hhH--HHHHHHHHHHHHHHHHHHHHcCC----Ccc---e-ehhHHHHHHHHHHHHHHHHH--h-cccchH-HHHHHHHHH
Confidence            111  11111111222222222332211    111   1 11111112221111111110  0 001110 011121111


Q ss_pred             HHHHHHHHHHHHhhhhc-cCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          158 SICCSGTGFYYQTRGLK-HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       158 ~i~~~~~G~~lqq~al~-~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      .......++.+.-.+.+ .-+. .........||++++..++.+|+|+.+...  ......|..+++.|+++..
T Consensus       217 ~Gi~~~ia~~~y~~~~~~~~~~-~~~~~ls~~~pvia~~~~v~~l~E~~~~~~--~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       217 PGLMWGIGNFFYLFSAQPKVGV-ATSFSLSQLGVIISTLGGILILGEKKTKRE--MIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHHHHHcccccch-hhHHHHHHHHHHHHHHHHHHHhccCCCcce--eehhHHHHHHHHHHHHHHh
Confidence            22235566655555656 3332 222233677999999999999999997643  2222366677777776554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.10  E-value=0.00042  Score=63.60  Aligned_cols=201  Identities=20%  Similarity=0.126  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCC--C--CCCCCcc---
Q 023265            2 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG--E--EQEPSSI---   74 (285)
Q Consensus         2 ~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~--~--~~~~~~~---   74 (285)
                      +.+.--++..++++-|-+.-|=+.-+.+++|++++..++|||+++++|.+..+.++|+..+..++  +  .++....   
T Consensus        27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~  106 (244)
T PF04142_consen   27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHD  106 (244)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccc
Confidence            44556788999999999999999999999999999999999999999999999999999764111  1  1111111   


Q ss_pred             -cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccchhH
Q 023265           75 -SIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPV  153 (285)
Q Consensus        75 -~~~~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~  153 (285)
                       .........+.+.....+=.....+..+.-++.+.+-  -.+-+.+ -..|+++.+.....+......++|+..-++++
T Consensus       107 ~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~--~~~N~qL-~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~  183 (244)
T PF04142_consen  107 ASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSL--WIQNMQL-YLFGILFNLLALLLSDGSAISESGFFHGYSWW  183 (244)
T ss_pred             cccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHH-HHHHHHHHHHHHhcccccccccCCchhhcchH
Confidence             1111111111111111111111222322222221111  1122333 23344445545444433222344555556666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 023265          154 CISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  207 (285)
Q Consensus       154 ~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~  207 (285)
                      .+. .+..-..|-++-.--++.-+- ..=..++..+.++..++.+.+||.++..
T Consensus       184 ~~~-~i~~~a~gGllva~v~Kyadn-I~K~fa~a~siv~t~~~s~~lf~~~~s~  235 (244)
T PF04142_consen  184 VWI-VIFLQAIGGLLVAFVLKYADN-IVKGFATAVSIVLTAVLSVLLFGFPPSL  235 (244)
T ss_pred             HHH-HHHHHHHhhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            443 455555555554445555442 2334446667788888999999988866

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.92  E-value=2.8e-05  Score=62.51  Aligned_cols=60  Identities=27%  Similarity=0.443  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhcc
Q 023265            4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA   64 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~   64 (285)
                      .++.+...|+.++| ..+.++..++.+|+.+++..++|||+++++|.++.++.+|++++..
T Consensus        47 ~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   47 VAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            56889999999999 6899999999999999999999999999999999999999998753

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.74  E-value=7.4e-05  Score=60.62  Aligned_cols=60  Identities=18%  Similarity=0.354  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      +.+.+-..+++..|+++..|+..++.+++.+++.+++|||++.++|.|+.+..+|+++++
T Consensus        49 l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         49 LAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            467788899999999999999999999999999999999999999999999999998764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.67  E-value=0.011  Score=55.27  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            2 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         2 ~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      +.++-.++-.||.+-|...-+=.=.+.++++++++..++|+|.+++||.++.+.++|++.+.
T Consensus        74 ~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~  135 (303)
T PF08449_consen   74 FFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT  135 (303)
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence            56777889999999999988888899999999999999999999999999999999999875

; GO: 0055085 transmembrane transport

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.54  E-value=0.00012  Score=61.31  Aligned_cols=60  Identities=30%  Similarity=0.491  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      .+++.+--.||..|+.|.|-|+--++.+++..++..++|||+|..+|+|+.++.+|..++
T Consensus        78 glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv  137 (140)
T COG2510          78 GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV  137 (140)
T ss_pred             HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence            467788889999999999999999999999999999999999999999999999998765

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.28  E-value=0.00058  Score=57.22  Aligned_cols=67  Identities=33%  Similarity=0.471  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          157 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      .+...+.+++++.=+|+|.|+.. ...|-.-.+|+..+.+++++|||++....      .+|..++++|+++++
T Consensus        72 lSGla~glswl~Yf~ALk~G~as-~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          72 LSGLAGGLSWLLYFRALKKGKAS-RVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcc-eEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            34557777888888999999953 23444667899999999999999998764      388889999987765

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.25  E-value=0.044  Score=51.67  Aligned_cols=166  Identities=13%  Similarity=0.220  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023265           30 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQE  108 (285)
Q Consensus        30 ~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~  108 (285)
                      ++-.+++..++|||+++-+|+++.++++|+.... ..++      .+     |..+..+..   ...+.. .||.-.   
T Consensus       110 L~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~------lp-----wval~la~s---f~~Ygl-~RK~~~---  171 (293)
T COG2962         110 LVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS------LP-----WVALALALS---FGLYGL-LRKKLK---  171 (293)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC------Cc-----HHHHHHHHH---HHHHHH-HHHhcC---
Confidence            3566889999999999999999999999999643 2222      22     445544432   222222 222211   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHhhhccCcC-----ccchhHHHHHHHHHHHHHHHHHhhhhccCcchhH
Q 023265          109 MIEFEVVEEIIYGLESGILFGMASVISK--LGFVFLEQGFP-----TMLVPVCISISICCSGTGFYYQTRGLKHGRAIVV  181 (285)
Q Consensus       109 ~~~~~~~~a~l~G~aaG~~fG~~A~l~K--~~~~~~~~g~~-----~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~v  181 (285)
                                 +....|.+.=+.-.+--  .-...+++.-+     ..-.++-+.+....+..-..+...|-+.=|. .+
T Consensus       172 -----------v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpl-s~  239 (293)
T COG2962         172 -----------VDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPL-ST  239 (293)
T ss_pred             -----------CchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCH-HH
Confidence                       11122222111111111  11112222221     1111222223334555566777777776663 22


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265          182 STCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  231 (285)
Q Consensus       182 s~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~  231 (285)
                      .--..-.+|..=.++++.++||+++.+      +..+.+++-.++++.+.
T Consensus       240 ~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         240 LGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFSI  283 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHH
Confidence            222378899999999999999999886      45677777777766654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.14  E-value=0.011  Score=47.87  Aligned_cols=66  Identities=18%  Similarity=0.145  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 023265          160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS  232 (285)
Q Consensus       160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s  232 (285)
                      .+-...+++++.++|.-|. -..-+....+++....+|..+|||+++..      +.+|..+++.|+++++.+
T Consensus        45 ~~~~l~~~~~~~al~~ipl-g~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~~~  110 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPV-GIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILGST  110 (111)
T ss_pred             HHHHHHHHHHHHHHhhCCh-HHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcc
Confidence            5667789999999999884 34444433789999999999999999764      568888999999888754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.10  E-value=0.0017  Score=54.26  Aligned_cols=62  Identities=18%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHHhhcc
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGA   64 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~--~~~~rl~~~ew~~v~l~~~Gl~~l~~   64 (285)
                      ++++.+-..+++..|+++..|+....+++....+..  ++||+++.++|.|+.++.+|+.++..
T Consensus        59 ~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         59 ALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            457788889999999999999999998888888875  89999999999999999999998753

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.09  E-value=0.015  Score=54.04  Aligned_cols=140  Identities=16%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             hhhHHHHHHHHHHHHhhccCCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 023265           46 AVDWMGITLAGIGTIGVGAGGEEQEP-SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLES  124 (285)
Q Consensus        46 ~~ew~~v~l~~~Gl~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aa  124 (285)
                      .+|..|++++..|+.++.-.+++.++ ++.+       +.......++.+.+....+|..+...     ..+    |++.
T Consensus       119 ~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~G-------v~~Al~AG~~Wa~YIv~G~r~g~~~~-----g~~----g~a~  182 (292)
T COG5006         119 LRDFVWVALAVLGIWLLLPLGQSVWSLDPVG-------VALALGAGACWALYIVLGQRAGRAEH-----GTA----GVAV  182 (292)
T ss_pred             hhhHHHHHHHHHHHHhheeccCCcCcCCHHH-------HHHHHHHhHHHHHHHHHcchhcccCC-----Cch----HHHH
Confidence            35666777888888776533433221 2222       33333444566665555555542111     011    2333


Q ss_pred             HHHHHHHHHHHHH-hHhhhccCcCccchhH----HHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHH
Q 023265          125 GILFGMASVISKL-GFVFLEQGFPTMLVPV----CISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGML  199 (285)
Q Consensus       125 G~~fG~~A~l~K~-~~~~~~~g~~~l~~~~----~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~  199 (285)
                      |...  .++..-. +.   .|.-..+++|-    .+.+.+..+.+=|-+.|-++++=|. .......-.||..+.+.|++
T Consensus       183 gm~v--Aaviv~Pig~---~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~-~~F~~LlSLePa~aAl~G~i  256 (292)
T COG5006         183 GMLV--AALIVLPIGA---AQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPA-RTFGTLLSLEPALAALSGLI  256 (292)
T ss_pred             HHHH--HHHHHhhhhh---hhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCCh-hHHHHHHHhhHHHHHHHHHH
Confidence            3222  2222221 22   12223455543    3445566666678999999998774 11111145699999999999


Q ss_pred             HhcCCCCC
Q 023265          200 ALGERLPS  207 (285)
Q Consensus       200 vLGE~l~~  207 (285)
                      +|||++..
T Consensus       257 ~L~e~ls~  264 (292)
T COG5006         257 FLGETLTL  264 (292)
T ss_pred             HhcCCCCH
Confidence            99999976

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=96.90  E-value=0.0023  Score=50.14  Aligned_cols=60  Identities=22%  Similarity=0.259  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      .+++.+...|+...|.+.+.++..++-+++.+++..++||++++++|.|+.++..|+.++
T Consensus        65 ~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   65 ALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             ehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.55  E-value=0.0041  Score=50.94  Aligned_cols=60  Identities=20%  Similarity=0.379  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHhccCCeeeehhhh-hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 023265            2 DIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG   61 (285)
Q Consensus         2 ~~~G~~lq~~AL~~gplsvVQPl~-~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~   61 (285)
                      +..|.++=...|+..|+|+.-|+- +++++||++.+.++.+|..+++.|.|..+++.|+.+
T Consensus        51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            456788888899999999999998 999999999997777777788899999999998764

Many members are annotated as potential transmembrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.54  E-value=0.012  Score=48.71  Aligned_cols=61  Identities=16%  Similarity=0.319  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhccCCeeeehhhh-hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            3 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~-~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      .+.+.+-..|++.-|+++..|+. ..+.+.+..++.+++||+++..+|.++.+..+|++++-
T Consensus        41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            35677888999999999999997 69999999999999999999999999999999998863

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.35  E-value=0.043  Score=45.79  Aligned_cols=71  Identities=17%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHH--HHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265          154 CISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGM--LALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  231 (285)
Q Consensus       154 ~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv--~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~  231 (285)
                      -+|..+.+..+++++|..+++.-|.- ..-|.....+......++  .+|||+++..      +..|.+++++|++.+..
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls-~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLS-RAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhcc
Confidence            36788999999999999999998852 333333333444444455  4899999764      56888999999988764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.20  E-value=1.1  Score=42.01  Aligned_cols=60  Identities=22%  Similarity=0.311  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhccCCeeeehhhh-hHHHHHHHHHHHHHhccccchhhHH----HHHHHHHHHHhhc
Q 023265            4 FGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVG   63 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~-~~~l~ftl~lsa~~~~~rl~~~ew~----~v~l~~~Gl~~l~   63 (285)
                      +|-.+|..+....-+|.--|+. ...|+.+.+++.++++|.-+..+|.    ++++..+|+.+-+
T Consensus        57 iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   57 IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            6788999999999999999999 6789999999999999999999988    3444455555443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.08  E-value=0.027  Score=45.81  Aligned_cols=60  Identities=15%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            4 FGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      +.+.+-..|++.-|+++..|+-+ .|.+.+..++.+++||+++..+|.|+.+..+|++++-
T Consensus        42 ~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            45667788999999999999955 8999999999999999999999999999999999873

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=95.95  E-value=0.062  Score=42.95  Aligned_cols=66  Identities=26%  Similarity=0.296  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265          158 SICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  231 (285)
Q Consensus       158 ~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~  231 (285)
                      ++.....+++++..|++..+. .++ +..-.+|+...++|...|+|+++..      +..+.+++.+|++++..
T Consensus        41 g~~~~~~~~~~~~~a~~~~~~-~v~-~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAPA-LVA-AIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCcH-HHH-HHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            344445778889999999994 333 4456799999999999999999875      34677788889988875

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=95.91  E-value=0.025  Score=44.19  Aligned_cols=69  Identities=30%  Similarity=0.375  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          155 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       155 ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      .+..+.++..+++++++++|..++..++ .....+|+.+.++++.+++|+++..      +..|..+++.|++++.
T Consensus        57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   57 LFLGLLGTALAYLLYFYALKYISASIVS-ILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             hHhhccceehHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            3445555788999999999999864443 3366899999999999999999653      4466677777776653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.85  E-value=0.019  Score=45.01  Aligned_cols=53  Identities=25%  Similarity=0.442  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhhHHHHHHH
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVDWMGITLA   55 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~ew~~v~l~   55 (285)
                      .+.+.+-..|++..|+++.-|+.. .+.+.+.+++..++||++|..+|.++.++
T Consensus        40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            356778889999999999999986 99999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=95.62  E-value=0.027  Score=51.84  Aligned_cols=59  Identities=17%  Similarity=0.286  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG   61 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~   61 (285)
                      .+++.+...+++..|.+.+.++.-.+-+++.+++..++||+++..+|.|..++.+|+.+
T Consensus       222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            46788999999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.27  E-value=0.062  Score=43.38  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      ...+.+...|+..-|+++.-++-. .|.+.+.+++.+++||++|..+|.++.+..+|++++
T Consensus        40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            356778888999999999999987 899999999999999999999999999999999876

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.14  E-value=0.066  Score=43.56  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            4 FGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      +.+.+...|++.-|+++.-++-. .|.+.+..++.+++||+++..+|.++.+...|+.++
T Consensus        47 ~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         47 AAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            46777888999999999999986 788999999999999999999999999999998865

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.61  E-value=4.7  Score=39.12  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=51.9

Q ss_pred             HHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            8 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         8 lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      +|-+|++.-|=..=|..--.-...|++++..++|||+++++|.+..+...|+..+-
T Consensus       108 l~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen  108 LQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            67889999998889999999999999999999999999999999999999999763

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=94.45  E-value=0.9  Score=36.89  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          157 ISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      ..+.+-...|++.+++++.=|. ...-+. +-...+...++|+.+|||+++..      +..+..+++.|++.+-
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl-~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPT-GIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3456777889988989987663 222222 33466667899999999999664      5588889999998874

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=93.78  E-value=0.13  Score=45.98  Aligned_cols=57  Identities=12%  Similarity=0.092  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT   59 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl   59 (285)
                      ..++.+...|++..|...+..+..+.-+++.+++..++||+++..+|.|..+...|+
T Consensus       203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            468889999999999999999999999999999999999999999999999988875

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=93.63  E-value=1.7  Score=35.35  Aligned_cols=76  Identities=32%  Similarity=0.440  Sum_probs=52.6

Q ss_pred             cCcCccchhHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH--HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 023265          144 QGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLL  221 (285)
Q Consensus       144 ~g~~~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a--tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~  221 (285)
                      ||+.......   +.+.+-...|++...++|.=|.  -...+  +-...+..+++|+.+|||+++..      ..++..+
T Consensus        25 ~gf~~~~~~i---l~~v~~~~sf~~Ls~alk~ipv--gvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~L   93 (106)
T COG2076          25 DGFTRLWPSI---LTIVGYGLSFYLLSLALKTIPL--GVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLAL   93 (106)
T ss_pred             hcccccchHH---HHHHHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHH
Confidence            4555433332   3355667789998889998662  23334  55566677899999999999663      4577788


Q ss_pred             HHHHHHHHh
Q 023265          222 IMIGVVLLV  230 (285)
Q Consensus       222 iv~Gvv~L~  230 (285)
                      +++|++.+=
T Consensus        94 iiaGvi~Lk  102 (106)
T COG2076          94 ILAGVIGLK  102 (106)
T ss_pred             HHHHHHHhh
Confidence            888988763

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=93.57  E-value=0.24  Score=46.01  Aligned_cols=61  Identities=15%  Similarity=0.298  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      ++++.++..+++..|-+.+.++...+-+++.+++..+++|+++..+|+|..++..|.+...
T Consensus       220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            4688899999999999999999999999999999999999999999999999998888754

>TIGR00803 nst UDP-galactose transporter

Probab=92.86  E-value=3.7  Score=36.32  Aligned_cols=49  Identities=10%  Similarity=0.047  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 023265          159 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  208 (285)
Q Consensus       159 i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~  208 (285)
                      +.+...|..+-.--++.-+.. +-...+..+++...++++..|||++...
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~ls~~  207 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAKISST  207 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence            445555544444344444433 2223377899999999999999998664

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=92.79  E-value=0.24  Score=46.07  Aligned_cols=60  Identities=12%  Similarity=0.206  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      .+++.++..+++..|-+.+.++.-.+-+++.+++..+++|+++..+|.|.+++..|+.+.
T Consensus       226 ~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        226 GFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            468899999999999999999999999999999999999999999999999999887754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=92.42  E-value=2.4  Score=34.47  Aligned_cols=70  Identities=20%  Similarity=0.299  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH--HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265          152 PVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  229 (285)
Q Consensus       152 ~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a--tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L  229 (285)
                      ++.....+.+-...|++..+++|.=|. - ...+  +-...+..+++|+.+|||+++..      +..+..+++.|++.+
T Consensus        35 ~~~~~~~~~~~~~sf~~Ls~al~~lpv-g-vAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         35 KIYGILSLAAVLAAFSALSQAVKGIDL-S-VAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhCch-H-HHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            333334466777889999999997662 2 2333  45566667899999999999664      557888899998876

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=91.71  E-value=0.6  Score=37.92  Aligned_cols=60  Identities=22%  Similarity=0.373  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhccCCeeeehhhh-hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            3 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~-~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      .+.|.+...|+..-|+++.-++- ..|.+.+...+..++||+++..+|.++.+..+|++++
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            45678888999999999999986 4688999999999999999999999999999998875

>PRK11431 multidrug efflux system protein; Provisional

Probab=91.69  E-value=3.1  Score=33.51  Aligned_cols=65  Identities=23%  Similarity=0.287  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHhhhhccCcchhHhhhH--HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265          157 ISICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  229 (285)
Q Consensus       157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~a--tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L  229 (285)
                      ..+.+-...|++...++|.=|.  -...+  +-...+..+++|+.+|||+++..      +..+..+++.|++.+
T Consensus        34 ~~i~~~~~sf~~Ls~al~~ip~--gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         34 ITVTAMIVSMALLAWAMKSLPV--GTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCc--HhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            3466778889999999987662  23333  55677777999999999999664      557788889998876

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=91.52  E-value=0.43  Score=44.20  Aligned_cols=61  Identities=8%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      ++++.+...+++..|.+.+-.+...+-+++.+++..++||+++..+|.|..++..|+.+..
T Consensus       224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999987753

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=90.66  E-value=0.61  Score=43.30  Aligned_cols=59  Identities=10%  Similarity=0.045  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      +++.+-..|++..|-+.+.++.-.+-+++.+++..+++|+++..+|.|..++.+|+.++
T Consensus       225 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~  283 (296)
T PRK15430        225 VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF  283 (296)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            57888899999999999999999999999999999999999999999999987666653

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=90.59  E-value=1.1  Score=42.45  Aligned_cols=61  Identities=20%  Similarity=0.256  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      ..|..++--|+.+-|++=.-=+.-.+=+||..++..++||+-+..|-++......|++++.
T Consensus       108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            4566677778887777655555666778999999999999999999999999999988754

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=90.29  E-value=0.43  Score=45.31  Aligned_cols=63  Identities=29%  Similarity=0.566  Sum_probs=59.9

Q ss_pred             ChHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            1 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         1 ~~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      ||+.|--++-+.|-+-.-|--|=+=..-++|+-+++.-+++++++.++|.++..+..|+..++
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg  157 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG  157 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence            689999999999999999999999999999999999999999999999999999999999876

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=90.27  E-value=5  Score=33.12  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265          157 ISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  229 (285)
Q Consensus       157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L  229 (285)
                      ..+.+-...|++...++|.=|. ...-+. +-...+..+++|+.+|||+++..      +.++..+++.|++.+
T Consensus        35 ~~i~~~~~sf~~ls~al~~lpl-siAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l  101 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIAL-GVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLI  101 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHh
Confidence            3466778889999999987663 222222 33455666889999999999664      557788889998877

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=90.12  E-value=0.81  Score=40.78  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      .++.+...++...+...+.++.....+++..++..+++|+++..+|.|++++..|+....
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            578888899999999999999999999999999999999999999999988888887653

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=88.10  E-value=2.6  Score=39.88  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcc-Cc------CccchhHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHH
Q 023265          117 EIIYGLESGILFGMASVISKLGFVFLEQ-GF------PTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVAS  189 (285)
Q Consensus       117 a~l~G~aaG~~fG~~A~l~K~~~~~~~~-g~------~~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~  189 (285)
                      ++.+++.+.++.+.+..+-|....+.++ +.      ..++..+.++.+......|-..+--+|.-.|. ...+|.....
T Consensus         8 Gv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~-slv~Plg~~~   86 (300)
T PF05653_consen    8 GVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPA-SLVAPLGALS   86 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhH-HHHHHHHhhh
Confidence            4556666666667777777766554432 11      11222122344555667777777778887773 3444445556


Q ss_pred             HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265          190 IVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  230 (285)
Q Consensus       190 pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~  230 (285)
                      -+...+++-.+|+|+++...      ..|-++++.|.++++
T Consensus        87 lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   87 LVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIV  121 (300)
T ss_pred             hhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeE
Confidence            66678899999999998753      366667777776654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=87.92  E-value=1.2  Score=41.35  Aligned_cols=60  Identities=17%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      ++++.++..+++.-+-.-+-++....=+++.+++..+++|+++..+|.|..++..|+.+.
T Consensus       226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            456777777776666666667777777789999999999999999999999988887754

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=86.09  E-value=4.2  Score=38.59  Aligned_cols=65  Identities=20%  Similarity=0.355  Sum_probs=49.4

Q ss_pred             HhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcccch
Q 023265          169 QTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPS  243 (285)
Q Consensus       169 qq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s~~~~~~~p~~~  243 (285)
                      .=-|-++|..+.+|.. -..+|++-+++|.++|+||++.         ..|..++.+.+.+..-+....+.|...
T Consensus        89 fiWAvn~g~~leaSLG-Y~InPL~~VllG~lflkErls~---------~Q~iAV~lA~~GV~~~~~~~g~lpwva  153 (293)
T COG2962          89 FIWAVNNGHVLEASLG-YFINPLVNVLLGRLFLKERLSR---------LQWIAVGLAAAGVLIQTWLLGSLPWVA  153 (293)
T ss_pred             hheecCCCchhHHHhH-HHHHHHHHHHHHHHHHHhhccH---------HHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            3357788887766654 6889999999999999999987         566666666666666677777777643

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=85.28  E-value=1.9  Score=41.79  Aligned_cols=60  Identities=10%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      ++|.++..+++.-+-+.+-...-..=+|+++++..+++|+++..+++|.+++..|+.+..
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            477888888888888888888888889999999999999999999999999999998764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=84.44  E-value=2.2  Score=41.90  Aligned_cols=59  Identities=17%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             HHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCC
Q 023265           11 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ   69 (285)
Q Consensus        11 ~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~   69 (285)
                      +||++-.+.-.-=+..++=.||+.++..+-.||.+..+.+++.+...|++.+.-++..|
T Consensus       178 aALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  178 AALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            57888888888888889999999999999999999999999999999999876444333

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=84.18  E-value=3  Score=39.15  Aligned_cols=57  Identities=18%  Similarity=0.309  Sum_probs=51.7

Q ss_pred             HHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265            6 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV   62 (285)
Q Consensus         6 ~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l   62 (285)
                      |-|+.+||+-.|=..---+++..=.+++..+..+++|+++..||.++.++..+.++.
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            678999999999888888899999999999999999999999999999988777654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=83.28  E-value=47  Score=32.33  Aligned_cols=60  Identities=15%  Similarity=0.079  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhcccc---chhhHH----HHHHHHHHHHhhc
Q 023265            4 FGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVM---NAVDWM----GITLAGIGTIGVG   63 (285)
Q Consensus         4 ~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl---~~~ew~----~v~l~~~Gl~~l~   63 (285)
                      +|-.+|..+.++.-+|+-+|+.. ..++++.++...+++|--   +..++.    |++++.+|+++.+
T Consensus        85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s  152 (345)
T PRK13499         85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG  152 (345)
T ss_pred             hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            57789999999999999999964 678899999999988644   444443    6777778877654

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=83.25  E-value=14  Score=28.64  Aligned_cols=50  Identities=24%  Similarity=0.350  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCC
Q 023265          158 SICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSA  208 (285)
Q Consensus       158 ~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~  208 (285)
                      .+.+-..++++..+++|.-|. .+.-|. +-...+.-.++|+.++||+++..
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~-~vaYavw~g~g~v~~~~~~~~~f~E~~s~~   85 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPL-SVAYAVWTGLGIVGVTLVGVFFFGESLSLS   85 (93)
T ss_dssp             HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            455777889999999999884 222233 44566777889999999999774

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.84
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.81
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.55
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.46

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.84  E-value=4.1e-05  Score=60.69  Aligned_cols=62  Identities=18%  Similarity=0.365  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhccCCeeeehhh-hhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhcc
Q 023265            3 IFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA   64 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl-~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~   64 (285)
                      .+++.+-..|++..|++.+-|+ ...+.+++.+++.+++||+++..+|.|+.++.+|+.++..
T Consensus        41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3566778889999999999999 7999999999999999999999999999999999998753

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.81  E-value=9.6e-05  Score=61.11  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265          156 SISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  231 (285)
Q Consensus       156 y~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~  231 (285)
                      .+.+++..++|++++++++..+.-.+....+-.+|+..+++|+.+|||+++..      +.+|.++++.|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            45677899999999999999996433332267799999999999999999775      45888899999988864

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.55  E-value=0.0012  Score=52.15  Aligned_cols=72  Identities=19%  Similarity=0.212  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265          153 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  231 (285)
Q Consensus       153 ~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~  231 (285)
                      |.....+.+...+++++++++|..|.-. .-|. +-.+|+...++|+.+|||+++..      +..|..+++.|++.+..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~al~~~p~s~-ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           31 WPSVGTIICYCASFWLLAQTLAYIPTGI-AYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhh-HHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            3334567788889999999999999533 3333 66799999999999999999664      56888899999988764

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.46  E-value=0.00016  Score=59.80  Aligned_cols=61  Identities=18%  Similarity=0.377  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhccCCeeeehhh-hhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265            3 IFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG   63 (285)
Q Consensus         3 ~~G~~lq~~AL~~gplsvVQPl-~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~   63 (285)
                      .+++.+...|++..|++.+-|+ ..++.+++.+++.++++|+++..+|+|+.++.+|+.++.
T Consensus        41 ~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (137)
T ss_dssp             HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4677888999999999999999 799999999999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00