Citrus Sinensis ID: 023276

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK
ccccccccccccccccccccccccccccEEEEcccccEEcHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccEEEEEEcccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccccc
cccccccccccEEcccccEEEEccEEEEEEEccccccccccccEEEEcHHcHHHHHHHHHHccccccccccccccccccccccccccccccccEEccEEEccccccccccccEEEEEcccccccccEEEEEcccccccccEEccccccHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccHHcccccccccccccccccHHHHHHHHHHHcEEccccEEcccEcccEccccEEcccEcEEEccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
mlsgahnitvvldqplvgqgmsdnpmnaifvpspvpVEVSLIQVVGITqfgsyieaasgenfaggspsprdygmfspkigqlskvppkqrtpEAIAEAIENMKalddpafrggfilekvmgpvstghlelrtrnpndnpsvtfnyfkepedlqRCVQGISTIEKIIESKsfskfkyesmsVPILVNMtasapvnllprhsnastslEQFCRDTVMTIWHyhggcqvgkvvdhdykvlGVDALrvidgstfyyspgtnpqATVMMLGRYMGVRILSErlasndsk
MLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIgqlskvppkqRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHlelrtrnpndnpSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGstfyyspgtnpqATVMMLGRYMGVRILserlasndsk
MLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGistiekiiesksfskfkYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK
*******ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAA***********************************************LDDPAFRGGFILEKVMGPVSTGHL************VTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL**********
MLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI***********
MLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK
******NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLA*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q9S746594 Protein HOTHEAD OS=Arabid no no 0.950 0.454 0.543 7e-79
Q9SSM2552 (R)-mandelonitrile lyase- no no 0.834 0.429 0.437 9e-51
P52706563 (R)-mandelonitrile lyase N/A no 0.845 0.426 0.362 4e-41
Q945K2563 (R)-mandelonitrile lyase N/A no 0.845 0.426 0.358 6e-40
O50048576 (R)-mandelonitrile lyase N/A no 0.838 0.413 0.375 7e-39
O82784574 (R)-mandelonitrile lyase N/A no 0.852 0.421 0.352 1e-37
P52707573 (R)-mandelonitrile lyase N/A no 0.852 0.422 0.348 1e-37
O24243559 (R)-mandelonitrile lyase N/A no 0.799 0.406 0.327 5e-32
A7MFA8559 Choline dehydrogenase OS= yes no 0.450 0.228 0.278 3e-11
A8AJN0558 Choline dehydrogenase OS= yes no 0.461 0.234 0.286 5e-11
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1 Back     alignment and function desciption
 Score =  293 bits (751), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 150/276 (54%), Positives = 187/276 (67%), Gaps = 6/276 (2%)

Query: 8   ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSP 67
           I VVL+   VG+GM+DNPMN I VPS  P+E SLIQ VGIT+ G Y+EA++G    G SP
Sbjct: 318 IPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITKMGVYVEASTG---FGQSP 374

Query: 68  SP--RDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVST 125
                 YG+ S K    S +P KQR PEA    I   K     AF G FILEK+  P+S 
Sbjct: 375 ESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHEAFNGSFILEKLAYPISR 434

Query: 126 GHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF-KYESMSVPIL 184
           GHL L   N +DNPSVTFNYFK P DLQRCV+ I  + K++ S  F  + + +  +V  +
Sbjct: 435 GHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKM 494

Query: 185 VNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRV 244
           ++++  A +NL P+  N + S+ QFC+DTV+TIWHYHGGC VGKVV  + KVLGVD LRV
Sbjct: 495 LSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRV 554

Query: 245 IDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 280
           IDGSTF  SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct: 555 IDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1 Back     alignment and function description
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1 Back     alignment and function description
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1 Back     alignment and function description
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1 Back     alignment and function description
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1 Back     alignment and function description
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1 Back     alignment and function description
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1 Back     alignment and function description
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
356514078 581 PREDICTED: protein HOTHEAD-like [Glycine 0.975 0.476 0.808 1e-136
356563226 581 PREDICTED: protein HOTHEAD-like [Glycine 0.971 0.475 0.800 1e-135
224053991 577 predicted protein [Populus trichocarpa] 0.985 0.485 0.813 1e-134
359474260 578 PREDICTED: protein HOTHEAD isoform 1 [Vi 0.996 0.489 0.794 1e-134
449452496 578 PREDICTED: protein HOTHEAD-like [Cucumis 0.996 0.489 0.756 1e-128
449495903 580 PREDICTED: protein HOTHEAD-like [Cucumis 0.975 0.477 0.769 1e-128
359474262 568 PREDICTED: protein HOTHEAD isoform 2 [Vi 0.961 0.480 0.767 1e-126
357481761 580 Choline dehydrogenase [Medicago truncatu 0.968 0.474 0.755 1e-125
357481759 580 Choline dehydrogenase [Medicago truncatu 0.971 0.475 0.716 1e-118
388502080 412 unknown [Medicago truncatula] 0.971 0.669 0.713 1e-118
>gi|356514078|ref|XP_003525734.1| PREDICTED: protein HOTHEAD-like [Glycine max] Back     alignment and taxonomy information
 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/287 (80%), Positives = 260/287 (90%), Gaps = 10/287 (3%)

Query: 1   MLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGS 52
           MLSG        AHNI + LDQPLVGQGMSDNPMNAIFVPSPVPVE+SLI+VVGIT FG+
Sbjct: 287 MLSGIGPEEHLKAHNIRITLDQPLVGQGMSDNPMNAIFVPSPVPVEISLIEVVGITTFGT 346

Query: 53  YIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRG 112
           YIEAASGENFAGGSP  +DYGMFSPKIGQLS VPPKQRTPEA+A+AIE M+ LD  AFRG
Sbjct: 347 YIEAASGENFAGGSP--KDYGMFSPKIGQLSTVPPKQRTPEALAKAIEVMETLDQAAFRG 404

Query: 113 GFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFS 172
           GFILEK+MGP+S+GHLELR+R+PNDNPSVTFNYF++P DLQRCVQG+ST+EKIIESK+FS
Sbjct: 405 GFILEKIMGPISSGHLELRSRDPNDNPSVTFNYFQDPRDLQRCVQGLSTVEKIIESKAFS 464

Query: 173 KFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 232
            F+Y +M VP+L+NMTASAPVNLLP+H+N+S SLEQ+C+DTVMTIWHYHGGCQV KVVD 
Sbjct: 465 PFRYPNMPVPVLLNMTASAPVNLLPKHTNSSLSLEQYCKDTVMTIWHYHGGCQVAKVVDR 524

Query: 233 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLA 279
           DYKVLGVDALRVIDGSTF YSPGTNPQATVMMLGRYMGV+ILSERL 
Sbjct: 525 DYKVLGVDALRVIDGSTFNYSPGTNPQATVMMLGRYMGVKILSERLG 571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356563226|ref|XP_003549865.1| PREDICTED: protein HOTHEAD-like [Glycine max] Back     alignment and taxonomy information
>gi|224053991|ref|XP_002298074.1| predicted protein [Populus trichocarpa] gi|222845332|gb|EEE82879.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474260|ref|XP_002282510.2| PREDICTED: protein HOTHEAD isoform 1 [Vitis vinifera] gi|297742610|emb|CBI34759.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452496|ref|XP_004143995.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449495903|ref|XP_004159980.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359474262|ref|XP_003631426.1| PREDICTED: protein HOTHEAD isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481761|ref|XP_003611166.1| Choline dehydrogenase [Medicago truncatula] gi|355512501|gb|AES94124.1| Choline dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357481759|ref|XP_003611165.1| Choline dehydrogenase [Medicago truncatula] gi|355512500|gb|AES94123.1| Choline dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388502080|gb|AFK39106.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2034705572 AT1G12570 [Arabidopsis thalian 0.915 0.454 0.592 4.7e-80
TAIR|locus:2173068586 AT5G51950 [Arabidopsis thalian 0.954 0.462 0.55 1.1e-73
TAIR|locus:2078441577 AT3G56060 [Arabidopsis thalian 0.926 0.455 0.544 5.9e-73
TAIR|locus:2032627594 HTH "HOTHEAD" [Arabidopsis tha 0.950 0.454 0.532 1.7e-68
TAIR|locus:2173053582 AT5G51930 [Arabidopsis thalian 0.922 0.450 0.503 2.4e-67
TAIR|locus:2032642552 AT1G73050 [Arabidopsis thalian 0.292 0.150 0.638 7e-50
UNIPROTKB|Q945K2563 MDL2 "(R)-mandelonitrile lyase 0.563 0.284 0.418 4.3e-38
TAIR|locus:2035830501 AT1G14190 [Arabidopsis thalian 0.274 0.155 0.628 7.1e-34
TAIR|locus:505006121503 AT1G14185 [Arabidopsis thalian 0.25 0.141 0.647 2.6e-33
UNIPROTKB|G4N440625 MGG_16853 "Uncharacterized pro 0.876 0.398 0.281 4e-11
TAIR|locus:2034705 AT1G12570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 169/285 (59%), Positives = 194/285 (68%)

Query:     5 AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAG 64
             A NITVV+DQP VGQGM DNPMNA+FVPSPVPVEVSLI+VVGIT  G+Y+EAA GENF G
Sbjct:   299 AQNITVVMDQPHVGQGMYDNPMNAVFVPSPVPVEVSLIEVVGITGEGTYVEAAGGENFGG 358

Query:    65 G------SPSPRDY-GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILE 117
             G      S S RDY  MFSP+                + E+    K      F+GGF+LE
Sbjct:   359 GGGGSSGSSSTRDYYAMFSPRA--------------TLLESNSMTKLSSAQPFQGGFLLE 404

Query:   118 KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYE 177
             KVMGP+STGHLEL+TRNP DNP VTFNYF+ P+DL+RCV+G                 Y 
Sbjct:   405 KVMGPLSTGHLELKTRNPKDNPIVTFNYFQHPDDLKRCVRGIQTIERVVQSKAFSRYKYA 464

Query:   178 SMSVPILVNMTASAPVNLLPRHSNASTSL----EQFCRDTVMTIWHYHGGCQVGKVVDHD 233
              +S   L+N+TAS PVNL P  S    SL    E+FC+ TV TIWHYHGGC VG+VVD D
Sbjct:   465 DVSFEYLLNLTASTPVNLRPPRSGPGASLPPSAEEFCQHTVTTIWHYHGGCVVGRVVDGD 524

Query:   234 YKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 278
             YKV+G+D LRVID ST  Y PGTNPQATVMMLGRYMGV+IL ERL
Sbjct:   525 YKVIGIDRLRVIDMSTVGYCPGTNPQATVMMLGRYMGVKILRERL 569
GO:0005576 "extracellular region" evidence=ISM
GO:0006066 "alcohol metabolic process" evidence=IEA
GO:0008812 "choline dehydrogenase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0016832 "aldehyde-lyase activity" evidence=ISS
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2173068 AT5G51950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078441 AT3G56060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032627 HTH "HOTHEAD" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173053 AT5G51930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032642 AT1G73050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q945K2 MDL2 "(R)-mandelonitrile lyase 2" [Prunus dulcis (taxid:3755)] Back     alignment and assigned GO terms
TAIR|locus:2035830 AT1G14190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006121 AT1G14185 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N440 MGG_16853 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00010969
hypothetical protein (577 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
PLN02785587 PLN02785, PLN02785, Protein HOTHEAD 1e-139
pfam05199139 pfam05199, GMC_oxred_C, GMC oxidoreductase 9e-28
COG2303542 COG2303, BetA, Choline dehydrogenase and related f 3e-16
PRK02106560 PRK02106, PRK02106, choline dehydrogenase; Validat 1e-14
TIGR01810532 TIGR01810, betA, choline dehydrogenase 1e-12
TIGR03970487 TIGR03970, Rv0697, dehydrogenase, Rv0697 family 5e-08
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD Back     alignment and domain information 
 Score =  404 bits (1040), Expect = e-139
 Identities = 177/288 (61%), Positives = 212/288 (73%), Gaps = 12/288 (4%)

Query: 1   MLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGS 52
           +LSG         H I VVL    VG+GM+DNPMN+IFVPS  PVE SLIQ VGIT+ G 
Sbjct: 296 LLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTVGITKMGV 355

Query: 53  YIEAASGENFAGGSPSPR-DYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFR 111
           YIEA+SG  F     S    +G+ S +IGQLS +PPKQRTPEAI   I   K L   AF 
Sbjct: 356 YIEASSG--FGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFN 413

Query: 112 GGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSF 171
           GGFILEK+ GP+STGHL L   N +DNPSVTFNYFK P+DLQRCV GI TIEKI+++  F
Sbjct: 414 GGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHF 473

Query: 172 SKF-KYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVV 230
           + F + +  ++  ++NM+  A +NL+P+H+N + SLEQFC+DTV+TIWHYHGGC VGKVV
Sbjct: 474 TNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVV 533

Query: 231 DHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 278
           D +YKVLGV  LRVIDGSTF  SPGTNPQATVMM+GRYMGV+IL ERL
Sbjct: 534 DQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERL 581

Length = 587
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase Back     alignment and domain information
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase Back     alignment and domain information
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
KOG1238623 consensus Glucose dehydrogenase/choline dehydrogen 100.0
PLN02785587 Protein HOTHEAD 100.0
TIGR01810532 betA choline dehydrogenase. This enzyme is a membe 100.0
PRK02106560 choline dehydrogenase; Validated 100.0
COG2303542 BetA Choline dehydrogenase and related flavoprotei 100.0
PF05199144 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078 100.0
TIGR02462544 pyranose_ox pyranose oxidase. Pyranose oxidase (al 99.83
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-58  Score=448.19  Aligned_cols=259  Identities=40%  Similarity=0.593  Sum_probs=201.5

Q ss_pred             CccccCCCcceecCcccCcccccCCCCcEEEecCCCccchhHHhhchhhHHhHHHhccCCCCCCCCCCCCcccccCcccc
Q 023276            1 MLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG   80 (284)
Q Consensus         1 ~~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~   80 (284)
                      .||+++||||++||||||+|||||+...++.....+.+....+........+|++.++|+++..+.   ..++++.....
T Consensus       332 ~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~---e~~~f~~t~~~  408 (623)
T KOG1238|consen  332 DHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPGV---ETLGFINTVSS  408 (623)
T ss_pred             HHHHhcCCCeeccCcccccccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCcc---eeeEEeccccc
Confidence            379999999999999999999999998776655556555555556667788999999998766431   11122221110


Q ss_pred             ccccCCCCCCChHH------------------------HHHHHHhhhcCCCCCCCceeEEEEeecCCCceEEEeecCCCC
Q 023276           81 QLSKVPPKQRTPEA------------------------IAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPN  136 (284)
Q Consensus        81 ~~~~~p~~~~~p~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~  136 (284)
                      .   .+  ..+||+                        .+..+....     ....++++..+++|+|||+|+|+|+||.
T Consensus       409 ~---~~--~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~-----~~~~~~i~~~~l~P~SrG~l~L~s~nP~  478 (623)
T KOG1238|consen  409 N---LS--LDWPDIELHFVAGSLSSDGLTALRKALGEIYQALFGELT-----NSDSFVIFPKLLRPKSRGRLKLRSTNPR  478 (623)
T ss_pred             c---Cc--CCCCCeeEEeccccccccchhhhhhhcchHHHHhhhhhh-----cCceeEEeehhcCCCccceEEecCCCCC
Confidence            0   00  112221                        111111111     1123567889999999999999999999


Q ss_pred             CCCeeeeCCCCCcchHHHHHHHHHHHHHHHhcccccccccccc--chhhhhhcccCCCCcCCCCCCCChhHHHHhhccCc
Q 023276          137 DNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM--SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTV  214 (284)
Q Consensus       137 ~~P~i~~~yl~~~~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~  214 (284)
                      +.|+|++|||++|+|++.+++|+|.+.++.++++|+++..++.  +.++|...           ...+|++|+||+|..+
T Consensus       479 ~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~-----------~~~sd~yw~c~~R~~~  547 (623)
T KOG1238|consen  479 DNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLL-----------AFLSDAYWECFCRHTV  547 (623)
T ss_pred             cCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccc-----------cCCCHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999987652  23444321           2578999999999999


Q ss_pred             ccccccccccccC------ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhhhcCC
Q 023276          215 MTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS  283 (284)
Q Consensus       215 ~~~~H~~GTc~MG------~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~~~~~~  283 (284)
                      .|.||++|||+||      +|||+++|||||+|||||||||||.+|++|||||+||||||+|+.|++++....++
T Consensus       548 ~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~~  622 (623)
T KOG1238|consen  548 VTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKDG  622 (623)
T ss_pred             ceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999999      89999999999999999999999999999999999999999888776666555443

>PLN02785 Protein HOTHEAD Back     alignment and domain information
>TIGR01810 betA choline dehydrogenase Back     alignment and domain information
>PRK02106 choline dehydrogenase; Validated Back     alignment and domain information
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] Back     alignment and domain information
>TIGR02462 pyranose_ox pyranose oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
1ju2_A536 Crystal Structure Of The Hydroxynitrile Lyase From 7e-37
3gdn_A521 Almond Hydroxynitrile Lyase In Complex With Benzald 7e-37
3red_A521 3.0 A Structure Of The Prunus Mume Hydroxynitrile L 2e-34
3fim_B566 Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu 6e-08
3nne_A546 Crystal Structure Of Choline Oxidase S101a Mutant L 7e-08
2jbv_A546 Crystal Structure Of Choline Oxidase Reveals Insigh 7e-08
3ljp_A546 Crystal Structure Of Choline Oxidase V464a Mutant L 2e-07
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (380), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 95/276 (34%), Positives = 137/276 (49%), Gaps = 36/276 (13%)
Query: 7   NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
           NI VVL  P VGQ + DNP N I +  P P+E +++ V+GI+    + + +    F+   
Sbjct: 281 NIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--DFYQCS----FSSLP 334
Query: 67  PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
            +   +G F           P    P            L +  F       KV GP+S G
Sbjct: 335 FTTPPFGFF-----------PSSSYP------------LPNSTF--AHFASKVAGPLSYG 369
Query: 127 HLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILV 185
            L L++  N   +P+V FNY+    DL  CV G                  E +      
Sbjct: 370 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 429
Query: 186 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVI 245
           N+        LP+      + E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+
Sbjct: 430 NILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVV 485
Query: 246 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 281
           DGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct: 486 DGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521 Back     alignment and structure
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521 Back     alignment and structure
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566 Back     alignment and structure
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546 Back     alignment and structure
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546 Back     alignment and structure
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 4e-87
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 1e-24
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 2e-24
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 9e-24
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 6e-23
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 8e-21
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 2e-19
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 5e-19
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 4e-14
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 1e-11
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 6e-05
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536 Back     alignment and structure
 Score =  268 bits (688), Expect = 4e-87
 Identities = 99/290 (34%), Positives = 149/290 (51%), Gaps = 44/290 (15%)

Query: 1   MLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGS 52
           +LSG        + NI VVL  P VGQ + DNP N I +  P P+E +++ V+GI+    
Sbjct: 267 LLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGIS--ND 324

Query: 53  YIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRG 112
           + + +    F+    +   +G F           P    P               P    
Sbjct: 325 FYQCS----FSSLPFTTPPFGFF-----------PSSSYP--------------LPNSTF 355

Query: 113 GFILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSF 171
                KV GP+S G L L++  N   +P+V FNY+    DL  CV G+  I +++ + + 
Sbjct: 356 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 415

Query: 172 SKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVD 231
             +K E +      N+        LP+      + E FCR++V + WHYHGGC VGKV+D
Sbjct: 416 KPYKVEDLPGVEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 471

Query: 232 HDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 281
            D++V G++ALRV+DGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct: 472 GDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566 Back     alignment and structure
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587 Back     alignment and structure
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583 Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526 Back     alignment and structure
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577 Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546 Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 100.0
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 100.0
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 100.0
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 100.0
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 100.0
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 100.0
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 100.0
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 100.0
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 100.0
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 99.97
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 99.97
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Back     alignment and structure
Probab=100.00  E-value=4.4e-55  Score=430.60  Aligned_cols=257  Identities=19%  Similarity=0.294  Sum_probs=189.7

Q ss_pred             ccccCCCcceecCcccCcccccCCCCcEEEecCCCccch-h--HHhhchhhHHhHHHhccCCCCCCCCCCCCcccccCcc
Q 023276            2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS-L--IQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPK   78 (284)
Q Consensus         2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~   78 (284)
                      +|+++||||++||||||+|||||+.+.+.|.++.+.+.. .  ..........+|+..++|+++....   ...+++...
T Consensus       291 ~L~~~gI~vv~dlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~---~~~~f~~~~  367 (566)
T 3fim_B          291 DLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIA---NHLAWLRLP  367 (566)
T ss_dssp             HHHHTTCCCSEECTTTTCSBBCCEEECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCSC---SEEEEECCC
T ss_pred             HHhhcCCCceecCcchhhhhhcCccceEEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCCcccChh---hheeeeccc
Confidence            799999999999999999999999988888876554321 0  0111123345788999998765431   111222111


Q ss_pred             c--cccccC---CCCCCChHHHHHHHHhhh---cCC-CCCCCceeEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCc
Q 023276           79 I--GQLSKV---PPKQRTPEAIAEAIENMK---ALD-DPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEP  149 (284)
Q Consensus        79 ~--~~~~~~---p~~~~~p~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~  149 (284)
                      .  ..+...   ......|+++ .++.+..   ... .......++..++++|+|||+|+|+|+||++.|+|++|||++|
T Consensus       368 ~~~~~~~~~~~~~~~~~~pd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~  446 (566)
T 3fim_B          368 SNSSIFQTFPDPAAGPNSAHWE-TIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTE  446 (566)
T ss_dssp             TTCGGGGTSCCCSSSTTSCSEE-EEEESSCCCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSH
T ss_pred             cchhhhhhhccccccCCCCCEE-EEecccchhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCc
Confidence            0  000000   0111233321 1111000   000 0111234566889999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccC--
Q 023276          150 EDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG--  227 (284)
Q Consensus       150 ~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG--  227 (284)
                      .|++.|++++|++++++++++++++...+.           .|+.   ....+|++|++|+|+...+.||++||||||  
T Consensus       447 ~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~P~~---~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~  512 (566)
T 3fim_B          447 FDIFTMIQAVKSNLRFLSGQAWADFVIRPF-----------DPRL---RDPTDDAAIESYIRDNANTIFHPVGTASMSPR  512 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHTSGGGTTTEEEES-----------SGGG---SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCT
T ss_pred             cHHHHHHHHHHHHHHHHhCcccCCcccccc-----------CCCc---ccccchHHHHHHHhhcccccccccCccccCCc
Confidence            999999999999999999999998875432           1220   245789999999999999999999999998  


Q ss_pred             ----ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHh
Q 023276          228 ----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  276 (284)
Q Consensus       228 ----~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~  276 (284)
                          +|||++||||||+|||||||||||+++++|||+|+||||||+|+.|+++
T Consensus       513 ~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~  565 (566)
T 3fim_B          513 GASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD  565 (566)
T ss_dssp             TCSSCSBCTTCBBTTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCccCCCCCeEccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence                7999999999999999999999999999999999999999999888654
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Back     alignment and structure
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Back     alignment and structure
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Back     alignment and structure
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1ju2a2170 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond 7e-42
d1ju2a1351 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { 4e-11
d1ju2a1351 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { 7e-04
d1cf3a2196 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus 5e-08
d1gpea2196 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium 3e-07
d1kdga1360 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain 6e-07
d2f5va1379 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W 7e-07
d1cf3a1385 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper 3e-05
d1gpea1391 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic 6e-05
d1kdga2181 d.16.1.1 (A:513-693) Flavoprotein domain of flavoc 1e-04
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  139 bits (352), Expect = 7e-42
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 36/204 (17%)

Query: 21  MSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG 80
           + DNP N I +  P P+E +++ V+GI+    Y  + S   F            +     
Sbjct: 2   LHDNPRNFINILPPNPIEPTIVTVLGISN-DFYQCSFSSLPFTTPPFGFFPSSSYPL--- 57

Query: 81  QLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNP 139
                                      P         KV GP+S G L L+ + N   +P
Sbjct: 58  ---------------------------PNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSP 90

Query: 140 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 199
           +V FNY+    DL  CV G+  I +++ + +   +K E +      N+        LP+ 
Sbjct: 91  NVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP----LPKD 146

Query: 200 SNASTSLEQFCRDTVMTIWHYHGG 223
                + E FCR++V + WHYHGG
Sbjct: 147 QTDDAAFETFCRESVASYWHYHGG 170
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 Back     information, alignment and structure
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 Back     information, alignment and structure
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196 Back     information, alignment and structure
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196 Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 Back     information, alignment and structure
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1cf3a2196 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.91
d1gpea2196 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.91
d1kdga2181 Flavoprotein domain of flavocytochrome cellobiose 99.89
d1ju2a2170 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 99.86
d2f5va1379 Pyranose 2-oxidase {White-rot fungus (Peniophora s 99.6
d1cf3a1385 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.46
d1kdga1360 Flavoprotein domain of flavocytochrome cellobiose 99.18
d1gpea1391 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.14
d1ju2a1351 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 98.35
d1gpea1391 Glucose oxidase {Penicillium amagasakiense [TaxId: 97.98
d1n4wa1367 Cholesterol oxidase of GMC family {Streptomyces sp 97.74
d3coxa1370 Cholesterol oxidase of GMC family {Brevibacterium 97.46
d1cf3a1385 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 95.52
d2f5va2198 Pyranose 2-oxidase {White-rot fungus (Peniophora s 92.96
d1ju2a1351 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 81.25
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.91  E-value=5e-26  Score=193.39  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=84.8

Q ss_pred             eeEEEEeecCCCceEEEeecCCCC-CCCeeeeCCCCCcchHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCC
Q 023276          113 GFILEKVMGPVSTGHLELRTRNPN-DNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASA  191 (284)
Q Consensus       113 ~~~~~~~~~p~SrG~V~L~s~dp~-~~P~i~~~yl~~~~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (284)
                      ..+.+++++|+|||+|+|+|+||. ++|+|++|||++|.|++.|++++|++++|+++++|++++..+.           .
T Consensus        97 ~~~~~~~l~P~SrG~V~l~S~dP~~d~P~I~~nyls~~~D~~~~~~~~r~~~~i~~~~~~~~~~~~e~-----------~  165 (196)
T d1cf3a2          97 ASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET-----------I  165 (196)
T ss_dssp             EEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGTEEEEE-----------E
T ss_pred             eeeeeeecCCCcceEEEeeCCCcccCCCccCHhhcCCchHHHHHHHHHHHHHHHHHhHHHHhcccccc-----------C
Confidence            345678899999999999999997 7999999999999999999999999999999999999886542           2


Q ss_pred             CCcCCCCCCCChhHHHHhhccCcccccccccc
Q 023276          192 PVNLLPRHSNASTSLEQFCRDTVMTIWHYHGG  223 (284)
Q Consensus       192 p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GT  223 (284)
                      ||...+ ...++++|++|+|+++.|.||++||
T Consensus       166 Pg~~~~-~d~~~~~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1cf3a2         166 PGDNLA-YDADLSAWTEYIPYHFRPNYHGVGT  196 (196)
T ss_dssp             SGGGSC-TTCCHHHHHHHGGGSCEECSCCBCT
T ss_pred             CCcCCC-CchhHHHHHHHHHhcCeeccccCCC
Confidence            442111 2346789999999999999999998
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure