Citrus Sinensis ID: 023281

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MWRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASKLAV
cccccccEEccccEEEEEccccEEEEEEcccccccccccccccccccEEEEEEcccccccccccccccccccEEEEEEcccccccEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEEEccccccccccccccccccccccEEEEEcccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEEccccccccEEEEEEccEEEEccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccc
ccccEEEEEccccccEEcccccEEEEEEcccccccccccccccccccEEEEEEccccccEEEccccccccccEEEEEEccccccccEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHEEccccccccccccccccccccccEEEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEcccHcccccHHHHHHccccccccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
mwrgcfrydvtaSEIKVISGGKKFLAQLNEkwimdpfilnsidqNEELLFCVTRSekanselipsaavpndsiLVIInanpieyghvfvvpcgsnrlypdarSFEMIVRIAFEINNYsfrlfydcsspgashvyfqacyfpdhlpvelmpidtffsdgqrgiyistlidypiKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWEcggyflfgskyefdQVTEEAIHKRLsavslndeGFQVVKQLCCSIASKLAV
mwrgcfrydvtaseikvisgGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSEKANSELipsaavpndSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYIstlidypikTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASKLAV
MWRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASKLAV
*WRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIA*****
*WRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSEKA**********PNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASKLAV
MWRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASKLAV
*WRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASKLA*
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MWRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASKLAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q8RWE8442 GDP-L-galactose phosphory yes no 0.943 0.606 0.334 2e-33
Q9FLP9431 GDP-L-galactose phosphory no no 0.943 0.621 0.340 5e-32
Q3TLS3386 GDP-D-glucose phosphoryla yes no 0.841 0.619 0.268 1e-12
Q6ZNW5385 GDP-D-glucose phosphoryla yes no 0.834 0.615 0.248 3e-12
Q8HXE4385 GDP-D-glucose phosphoryla N/A no 0.827 0.610 0.253 4e-10
Q5E9T1385 GDP-D-glucose phosphoryla yes no 0.838 0.618 0.254 5e-10
Q08CA1343 GDP-D-glucose phosphoryla yes no 0.873 0.723 0.232 5e-08
Q0V9F1399 GDP-D-glucose phosphoryla yes no 0.919 0.654 0.217 8e-06
A8E5Y3399 GDP-D-glucose phosphoryla N/A no 0.915 0.651 0.217 0.0003
>sp|Q8RWE8|GGAP1_ARATH GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1 Back     alignment and function desciption
 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 154/311 (49%), Gaps = 43/311 (13%)

Query: 3   RGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPF--------ILNSIDQN--------- 45
           RG FRYDVTA E KVI G   F+AQLNE   +           +L S D +         
Sbjct: 84  RGLFRYDVTACETKVIPGKYGFVAQLNEGRHLKKRPTEFRVDKVLQSFDGSKFNFTKVGQ 143

Query: 46  EELLFCVTRSEKANSELIPSAAV--PNDSILVIINANPIEYGHVFVVP----CGSNRLYP 99
           EELLF     E A  +  P   +   N   +V IN +PIEYGHV ++P    C   R+  
Sbjct: 144 EELLFQFEAGEDAQVQFFPCMPIDPENSPSVVAINVSPIEYGHVLLIPRVLDCLPQRI-- 201

Query: 100 DARSFEMIVRIAFEINNYSFRLFYDCSSPGAS--HVYFQACYFPDHLPVELMPIDTFFSD 157
           D +S  + V +A E  N  FRL Y+     A+  H++FQA Y     P+E  P     + 
Sbjct: 202 DHKSLLLAVHMAAEAANPYFRLGYNSLGAFATINHLHFQAYYLAMPFPLEKAPTKKITTT 261

Query: 158 GQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIF 217
              G+ IS L+ YP++++LFE   + +  + + +S+ C  L+  NI +N+LISDCG++IF
Sbjct: 262 -VSGVKISELLSYPVRSLLFEGGSSMQE-LSDTVSDCCVCLQNNNIPFNILISDCGRQIF 319

Query: 218 LFLQ----KSAISG----------NLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSL 263
           L  Q    K A+            N   WE  G+ +   K +++  +E+   + L+  SL
Sbjct: 320 LMPQCYAEKQALGEVSPEVLETQVNPAVWEISGHMVLKRKEDYEGASEDNAWRLLAEASL 379

Query: 264 NDEGFQVVKQL 274
           ++E F+ V  L
Sbjct: 380 SEERFKEVTAL 390
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Acts as a phosphorylase rather than as a transferase. Uses preferentially GDP-L-galactose and GDP-D-glucose as substrates. Lower activity with GDP-L-fucose, very low activity with GDP-D-mannose, and no activity with UDP-D-glucose, UDP-D-galactose or ADP-D-glucose. Highly specific for inorganic phosphate as the guanylyl acceptor.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 9
>sp|Q9FLP9|GGAP2_ARATH GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5 PE=1 SV=1 Back     alignment and function description
>sp|Q3TLS3|GDPP1_MOUSE GDP-D-glucose phosphorylase 1 OS=Mus musculus GN=Gdpgp1 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZNW5|GDPP1_HUMAN GDP-D-glucose phosphorylase 1 OS=Homo sapiens GN=GDPGP1 PE=1 SV=2 Back     alignment and function description
>sp|Q8HXE4|GDPP1_MACFA GDP-D-glucose phosphorylase 1 OS=Macaca fascicularis GN=GDPGP1 PE=2 SV=1 Back     alignment and function description
>sp|Q5E9T1|GDPP1_BOVIN GDP-D-glucose phosphorylase 1 OS=Bos taurus GN=GDPGP1 PE=2 SV=1 Back     alignment and function description
>sp|Q08CA1|GDPP1_DANRE GDP-D-glucose phosphorylase 1 OS=Danio rerio GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|Q0V9F1|GDPP1_XENTR GDP-D-glucose phosphorylase 1 OS=Xenopus tropicalis GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|A8E5Y3|GDPP1_XENLA GDP-D-glucose phosphorylase 1 OS=Xenopus laevis GN=gdpgp1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
297740843376 unnamed protein product [Vitis vinifera] 0.989 0.747 0.567 8e-90
225444061375 PREDICTED: GDP-L-galactose phosphorylase 0.989 0.749 0.569 1e-89
115489538368 Os12g0612100 [Oryza sativa Japonica Grou 0.978 0.755 0.390 5e-58
326487928369 predicted protein [Hordeum vulgare subsp 0.978 0.753 0.404 9e-56
357156527369 PREDICTED: GDP-L-galactose phosphorylase 0.978 0.753 0.392 2e-52
255564377261 conserved hypothetical protein [Ricinus 0.588 0.639 0.559 6e-51
77556584342 VTC2, putative, expressed [Oryza sativa 0.887 0.736 0.367 9e-51
218187237 918 hypothetical protein OsI_39091 [Oryza sa 0.823 0.254 0.366 5e-43
147816089289 hypothetical protein VITISV_001208 [Viti 0.545 0.536 0.502 1e-38
449444068 445 PREDICTED: GDP-L-galactose phosphorylase 0.940 0.6 0.361 7e-38
>gi|297740843|emb|CBI31025.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  336 bits (861), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 172/303 (56%), Positives = 215/303 (70%), Gaps = 22/303 (7%)

Query: 1   MWRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMD---------------PFILNSIDQN 45
           MW+G +RYDVT SEIK+I G +KFLAQLNE+W MD                FI N +  +
Sbjct: 75  MWKGIYRYDVTTSEIKIIGGRRKFLAQLNEEWNMDHLSDPDENEVCWRGDSFIFNWVKHH 134

Query: 46  EELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDARS 103
           EELLFCV   EKA  ELIP+A VPN SILV+ N  P+EYGHVF+VP G   +  + DARS
Sbjct: 135 EELLFCVASGEKAIPELIPTAPVPNASILVLSNVTPVEYGHVFLVPHGFTSISQFMDARS 194

Query: 104 FEMIVRIAFEINNYSFRLFYDCSSPGASHVYFQACYFPDHLPVELMPIDTFFSDGQRGIY 163
            EM+ R+A E+NN SFR+FYDCS P AS +YFQACYF + LPVE+MP+ T + +G  G  
Sbjct: 195 LEMVTRVAMEVNNRSFRVFYDCSMPSAS-LYFQACYFSNPLPVEVMPVVTLWDNGLGGTR 253

Query: 164 ISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKS 223
           I +LIDYPIK +LFE   N ++  +E ++EICS L+ KNI Y+ LISDCGKRIFLF Q+ 
Sbjct: 254 ICSLIDYPIKALLFESKSNVKV-SVEVLAEICSCLQGKNIPYSFLISDCGKRIFLFPQQM 312

Query: 224 AISGN---LLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIAS 280
             S N   L +WEC G+F+F S+ +FDQVTEEA+ +R+   SL++ GFQVVKQLCCSIAS
Sbjct: 313 RASANSHALSSWECSGHFVFKSRNDFDQVTEEAMLERMGTASLDEPGFQVVKQLCCSIAS 372

Query: 281 KLA 283
           KLA
Sbjct: 373 KLA 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444061|ref|XP_002263657.1| PREDICTED: GDP-L-galactose phosphorylase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|115489538|ref|NP_001067256.1| Os12g0612100 [Oryza sativa Japonica Group] gi|77556583|gb|ABA99379.1| VTC2, putative, expressed [Oryza sativa Japonica Group] gi|113649763|dbj|BAF30275.1| Os12g0612100 [Oryza sativa Japonica Group] gi|215678716|dbj|BAG95153.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617464|gb|EEE53596.1| hypothetical protein OsJ_36845 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|326487928|dbj|BAJ89803.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357156527|ref|XP_003577487.1| PREDICTED: GDP-L-galactose phosphorylase 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|255564377|ref|XP_002523185.1| conserved hypothetical protein [Ricinus communis] gi|223537592|gb|EEF39216.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|77556584|gb|ABA99380.1| VTC2, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218187237|gb|EEC69664.1| hypothetical protein OsI_39091 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|147816089|emb|CAN61883.1| hypothetical protein VITISV_001208 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444068|ref|XP_004139797.1| PREDICTED: GDP-L-galactose phosphorylase 1-like [Cucumis sativus] gi|449507444|ref|XP_004163034.1| PREDICTED: GDP-L-galactose phosphorylase 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2116342442 VTC2 "vitamin c defective 2" [ 0.820 0.527 0.323 7.6e-34
TAIR|locus:2161620431 VTC5 "VITAMIN C DEFECTIVE 5" [ 0.820 0.540 0.323 1.4e-31
RGD|1560277385 Gdpgp1 "GDP-D-glucose phosphor 0.704 0.519 0.283 1.8e-08
MGI|MGI:2443429386 Gdpgp1 "GDP-D-glucose phosphor 0.700 0.515 0.293 1.2e-07
UNIPROTKB|F1SJX4384 GDPGP1 "Uncharacterized protei 0.704 0.520 0.275 2.7e-07
UNIPROTKB|Q6ZNW5385 GDPGP1 "GDP-D-glucose phosphor 0.700 0.516 0.277 2.7e-07
UNIPROTKB|Q5E9T1385 GDPGP1 "GDP-D-glucose phosphor 0.778 0.574 0.273 2.9e-06
UNIPROTKB|Q8HXE4385 GDPGP1 "GDP-D-glucose phosphor 0.700 0.516 0.264 2.9e-06
ZFIN|ZDB-GENE-060929-280343 zgc:153343 "zgc:153343" [Danio 0.806 0.667 0.25 5.1e-06
UNIPROTKB|J9NW04408 GDPGP1 "Uncharacterized protei 0.704 0.490 0.261 7.1e-06
TAIR|locus:2116342 VTC2 "vitamin c defective 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 293 (108.2 bits), Expect = 7.6e-34, Sum P(2) = 7.6e-34
 Identities = 84/260 (32%), Positives = 135/260 (51%)

Query:    37 FILNSIDQNEELLFCVTRSEKANSELIPSAAV-PNDSILVI-INANPIEYGHVFVVP--- 91
             F    + Q EELLF     E A  +  P   + P +S  V+ IN +PIEYGHV ++P   
Sbjct:   136 FNFTKVGQ-EELLFQFEAGEDAQVQFFPCMPIDPENSPSVVAINVSPIEYGHVLLIPRVL 194

Query:    92 -CGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGAS--HVYFQACYFPDHLPVEL 148
              C   R+  D +S  + V +A E  N  FRL Y+     A+  H++FQA Y     P+E 
Sbjct:   195 DCLPQRI--DHKSLLLAVHMAAEAANPYFRLGYNSLGAFATINHLHFQAYYLAMPFPLEK 252

Query:   149 MPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLL 208
              P     +    G+ IS L+ YP++++LFE   + + +  + +S+ C  L+  NI +N+L
Sbjct:   253 APTKKITTTVS-GVKISELLSYPVRSLLFEGGSSMQELS-DTVSDCCVCLQNNNIPFNIL 310

Query:   209 ISDCGKRIFL----FLQKSA---ISGNLL-------AWECGGYFLFGSKYEFDQVTEEAI 254
             ISDCG++IFL    + +K A   +S  +L        WE  G+ +   K +++  +E+  
Sbjct:   311 ISDCGRQIFLMPQCYAEKQALGEVSPEVLETQVNPAVWEISGHMVLKRKEDYEGASEDNA 370

Query:   255 HKRLSAVSLNDEGFQVVKQL 274
              + L+  SL++E F+ V  L
Sbjct:   371 WRLLAEASLSEERFKEVTAL 390
GO:0005634 "nucleus" evidence=ISM
GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP
GO:0009408 "response to heat" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0008928 "mannose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010474 "glucose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010475 "galactose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010471 "GDP-galactose:mannose-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0010472 "GDP-galactose:glucose-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0010473 "GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0080046 "quercetin 4'-O-glucosyltransferase activity" evidence=IDA
GO:0080048 "GDP-D-glucose phosphorylase activity" evidence=IDA
GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP
TAIR|locus:2161620 VTC5 "VITAMIN C DEFECTIVE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1560277 Gdpgp1 "GDP-D-glucose phosphorylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2443429 Gdpgp1 "GDP-D-glucose phosphorylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJX4 GDPGP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZNW5 GDPGP1 "GDP-D-glucose phosphorylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9T1 GDPGP1 "GDP-D-glucose phosphorylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXE4 GDPGP1 "GDP-D-glucose phosphorylase 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-280 zgc:153343 "zgc:153343" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW04 GDPGP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029753001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (337 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
PLN03103403 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosp 1e-100
>gnl|CDD|215577 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information 
 Score =  298 bits (764), Expect = e-100
 Identities = 115/321 (35%), Positives = 166/321 (51%), Gaps = 43/321 (13%)

Query: 1   MWRGCFRYDVTASEIKVISGGKKFLAQLNEKW-------------IMDP-----FILNSI 42
           M RG FRYDVTA E KVI G   F+AQLNE               ++ P     F    +
Sbjct: 80  MARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKV 139

Query: 43  DQNEELLFCVTRSEKANSELIPSAAVP--NDSILVIINANPIEYGHVFVVPCGSNRLYP- 99
            Q EE+LF   + E    E  PSA +   N   +V IN +PIEYGHV +VP   + L P 
Sbjct: 140 GQ-EEVLFQFEQGEDDIPEFFPSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCL-PQ 197

Query: 100 --DARSFEMIVRIAFEINNYSFRLFYDCSSPGAS--HVYFQACYFPDHLPVELMPIDTFF 155
             D  SF + + +A E NN  FR+ Y+     A+  H++FQA Y  +  PVE  P     
Sbjct: 198 RIDPDSFLLALYMAAEANNPYFRVGYNSLGAFATINHLHFQAYYLANPFPVEKAPTVRIP 257

Query: 156 SDGQR-GIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGK 214
               + G+ +S L+DYP++ ++FE   ++   +  ++++ C  L++ NI YNLLISDCGK
Sbjct: 258 HGTAKSGVKVSELVDYPVRGLVFEGG-SDLEDLANSVADACICLQDNNIPYNLLISDCGK 316

Query: 215 RIFLFLQKSAISG--------------NLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSA 260
           R+FLF Q  A                 N   WE  G+ +   K ++++ TEE   + L+ 
Sbjct: 317 RVFLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHIVLKRKEDYERATEEYAWRLLAE 376

Query: 261 VSLNDEGFQVVKQLCCSIASK 281
           VSL++E FQ VK LC + ++ 
Sbjct: 377 VSLSEERFQEVKALCFAASAA 397

Length = 403

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
PLN03103403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 100.0
KOG2720431 consensus Predicted hydrolase (HIT family) [Genera 100.0
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 99.49
PRK10687119 purine nucleoside phosphoramidase; Provisional 99.43
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 99.32
cd01276104 PKCI_related Protein Kinase C Interacting protein 99.28
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 99.16
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 99.11
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 99.11
COG4360298 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr 99.03
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 99.0
KOG3275127 consensus Zinc-binding protein of the histidine tr 98.74
PRK05270493 galactose-1-phosphate uridylyltransferase; Provisi 98.71
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 98.64
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 98.61
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 98.52
TIGR01239489 galT_2 galactose-1-phosphate uridylyltransferase, 98.46
PLN02643336 ADP-glucose phosphorylase 98.34
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 98.24
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 98.06
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 98.01
PF0983062 ATP_transf: ATP adenylyltransferase; InterPro: IPR 97.88
KOG4359166 consensus Protein kinase C inhibitor-like protein 97.71
COG4468503 GalT Galactose-1-phosphate uridyltransferase [Carb 97.69
KOG2476528 consensus Uncharacterized conserved protein [Funct 97.3
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 97.22
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 96.82
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 96.54
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 96.43
PLN02643336 ADP-glucose phosphorylase 96.08
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 93.28
PF02744166 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf 90.33
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.7e-76  Score=557.69  Aligned_cols=277  Identities=40%  Similarity=0.613  Sum_probs=250.1

Q ss_pred             CCcccceeeCCceeEEEeeCceeEEEEEcCccCCCcc----------------CCcccc-CCCcceeeecCCCccccccC
Q 023281            1 MWRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPF----------------ILNSID-QNEELLFCVTRSEKANSELI   63 (284)
Q Consensus         1 ~~~g~frY~l~~~~tr~l~g~~~f~~QlNp~R~~~~~----------------k~~~~k-~~~~c~fc~~~~~~~~~~~~   63 (284)
                      |++|+|||||++|+||+|||+++|+||||++|.+++|                ||||+| +++|.+||....+++..+..
T Consensus        80 ~~~GlFrY~l~~~~tkvlpG~~gFvaQLN~~R~~krR~~~f~i~~v~qpFd~~kFNF~KV~~~EvLf~~~~~~~~~~~~~  159 (403)
T PLN03103         80 MARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFEQGEDDIPEFF  159 (403)
T ss_pred             HhcCCcccccccceeEEecCccceEEEecccchhccCCCccchhhccCCCCCCcccCCCCCCceeEEEEecCCCcccccc
Confidence            7899999999999999999999999999999999987                799999 99999999987765545555


Q ss_pred             CCcccC--CCcEEEEEeCccCCCCeEEEeecccccC--CCChhHHHHHHHHHHhcCCccceEEeecCCCC--CCceEEEE
Q 023281           64 PSAAVP--NDSILVIINANPIEYGHVFVVPCGSNRL--YPDARSFEMIVRIAFEINNYSFRLFYDCSSPG--ASHVYFQA  137 (284)
Q Consensus        64 ~~~~~~--~~~~~vliN~~Pi~~gH~l~vP~~~~~~--~l~~~~~~~~~~~~~~~~~~gf~vgyNsgaa~--~nHLHfh~  137 (284)
                      +++.+.  ++...|+||+|||++||+|+||+...++  +|+.++++++++++.++++++|||||||.||.  +||||||+
T Consensus       160 ~~~~~~~~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~~l~la~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa  239 (403)
T PLN03103        160 PSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAFATINHLHFQA  239 (403)
T ss_pred             cCCccccCCCccEEEEeCCCCccCeEEEcCCcccCCCeEecHHHHHHHHHHHHhcCCCcEEEEecCCccccCcceeeeee
Confidence            444332  5678999999999999999999998875  99999999999999999999999999964443  49999999


Q ss_pred             eecCCccceeecCCccccc-CCCCceEEEEccCCCeeEEEEEEecCCHHHHHHHHHHHHHHhhhcCCCceEEEEeCCeEE
Q 023281          138 CYFPDHLPVELMPIDTFFS-DGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRI  216 (284)
Q Consensus       138 ~~~~~~lPie~~~~~~l~~-~~~~g~~~~~l~~yp~~~f~~~~~~~~~e~~~~~~~~~~~~L~~~~~~~Nl~~~~~~~rv  216 (284)
                      +|++++||||.+|++++.. ...+|..+|+|.|||+++|||++ +++.+.+++.+++++++|+.+++|||||+|++|+||
T Consensus       240 ~yl~~~lPvE~ap~~~l~~~~~~~g~~vy~L~~yP~~~lvf~~-~~~~~~l~~~v~~~~~~L~~~niP~NL~i~~~g~rv  318 (403)
T PLN03103        240 YYLANPFPVEKAPTVRIPHGTAKSGVKVSELVDYPVRGLVFEG-GSDLEDLANSVADACICLQDNNIPYNLLISDCGKRV  318 (403)
T ss_pred             cccCCCCccccCccccccccccCCCceEEEecCCCceEEEEEe-CccHHHHHHHHHHHHHhhccCCcceEEEEEcCCeEE
Confidence            9999999999999998752 22356789999999999999995 577899999999999999999999999999999999


Q ss_pred             EEEeccC--------------CCCCCcceecccceeeecChHHHhhcCHHHHHHHHHhccCChHHHHHHHHHHHhh
Q 023281          217 FLFLQKS--------------AISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSI  278 (284)
Q Consensus       217 ~ifPR~~--------------~~~~~pa~~ElaG~li~~~~edf~~lTe~~i~~il~evsl~~~~f~~l~~~~~~~  278 (284)
                      ||||.+.              .++||||+||||||||+|+++||+++||++|+++|+|||||+++|++|+++|++.
T Consensus       319 flfP~Cy~~k~~~g~v~~~lL~s~~NPA~~EmsG~l~~~~~eDfe~lTE~~~~~il~EvsLse~~f~ev~~~i~~~  394 (403)
T PLN03103        319 FLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKALCFAA  394 (403)
T ss_pred             EEeCchhhhhhhccccchhHhhccCChhhHhhcceeeecchHhhhhcCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            9999442              2679999999999999999999999999999999999999999999999999987

>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2 Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes [] Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 99.48
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 99.46
4egu_A119 Histidine triad (HIT) protein; structural genomics 99.44
3oj7_A117 Putative histidine triad family protein; hydrolase 99.42
3r6f_A135 HIT family protein; structural genomics, seattle s 99.38
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 99.37
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 99.37
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 99.37
3imi_A147 HIT family protein; structural genomics, infectiou 99.34
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 99.34
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 99.32
2eo4_A149 150AA long hypothetical histidine triad nucleotid 99.31
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 99.31
3ksv_A149 Uncharacterized protein; HIT family, structural ge 99.3
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 99.11
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 99.07
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 99.07
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 99.03
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 98.77
3ohe_A137 Histidine triad (HIT) protein; structural genomics 98.67
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 98.67
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 98.66
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 98.63
3nrd_A135 Histidine triad (HIT) protein; structural genomics 98.42
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 98.13
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 97.89
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 96.84
3bl9_A301 Scavenger mRNA-decapping enzyme DCPS; ligand compl 93.45
1vlr_A350 MRNA decapping enzyme; 16740816, structural genomi 92.61
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
Probab=99.48  E-value=5.3e-14  Score=113.04  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             CcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhH---HHHHH----HHHHh--
Q 023281           46 EELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARS---FEMIV----RIAFE--  113 (284)
Q Consensus        46 ~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~---~~~~~----~~~~~--  113 (284)
                      +.|+||...+.+. +..    +++ ++.+++++|.+|+.|||+|+||.+|.. + .++++.   +.-++    ++++.  
T Consensus         3 ~~CiFC~I~~ge~-~~~----iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~   77 (119)
T 3n1s_A            3 EETIFSKIIRREI-PSD----IVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEG   77 (119)
T ss_dssp             CCCHHHHHHTTSS-CCC----EEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             CCChhhhhhcCCC-cCC----EEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhC
Confidence            5799997544322 222    667 889999999999999999999999995 4 777652   22222    33333  


Q ss_pred             cCCccceEEeecCC--CC-CCceEEEEeecCCcc
Q 023281          114 INNYSFRLFYDCSS--PG-ASHVYFQACYFPDHL  144 (284)
Q Consensus       114 ~~~~gf~vgyNsga--a~-~nHLHfh~~~~~~~l  144 (284)
                      .+++|||+|+|+|.  +. -.|+|+|++. ...|
T Consensus        78 ~~~~g~ni~~n~g~~agq~V~HlH~Hiip-r~~~  110 (119)
T 3n1s_A           78 IAEDGYRLIMNTNRHGGQEVYHIHMHLLG-GRPL  110 (119)
T ss_dssp             CTTTCEEEEEEEHHHHTCCSSSCCEEEEE-SSCC
T ss_pred             CCCCCeEEEEeCCCCcCCCcCEEEEEEeC-Cccc
Confidence            35789999999542  11 2699999998 5544
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Back     alignment and structure
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 99.47
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 99.45
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 99.45
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 99.29
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 99.18
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 99.15
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 99.0
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 98.97
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 97.57
d1z84a1173 Galactose-1-phosphate uridylyltransferase {Thale c 96.53
d1guqa1176 Galactose-1-phosphate uridylyltransferase {Escheri 93.28
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 82.23
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-14  Score=113.53  Aligned_cols=88  Identities=17%  Similarity=0.275  Sum_probs=62.9

Q ss_pred             cceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHH-------HHHHhc-C
Q 023281           47 ELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIV-------RIAFEI-N  115 (284)
Q Consensus        47 ~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~-------~~~~~~-~  115 (284)
                      +|+||..-+.+.     |..++| ++.+++++|.+|+++||+|+||.+|.. + .++++...++.       +++++. .
T Consensus         1 dCiFc~I~~~e~-----p~~ivyede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   75 (111)
T d1kpfa_           1 DTIFGKIIRKEI-----PAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGL   75 (111)
T ss_dssp             CCHHHHHHTTSS-----CCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCcccccccCCC-----CccEEEeCCCEEEEecCCCCCCceEEEeecchhcchhhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence            599997654322     222567 889999999999999999999999985 4 77765433322       223333 4


Q ss_pred             CccceEEeecCCCC---CCceEEEEee
Q 023281          116 NYSFRLFYDCSSPG---ASHVYFQACY  139 (284)
Q Consensus       116 ~~gf~vgyNsgaa~---~nHLHfh~~~  139 (284)
                      ++|||+++|.|.++   -.|+|+|++.
T Consensus        76 ~~g~~i~~n~g~~agq~V~HlH~Hiip  102 (111)
T d1kpfa_          76 NKGYRMVVNEGSDGGQSVYHVHLHVLG  102 (111)
T ss_dssp             TTCEEEECCCHHHHTCCSSSCCEEEEE
T ss_pred             CCCEEEEEeCCccCCcccceeEEEEeC
Confidence            57999999954321   2799999997
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure