Citrus Sinensis ID: 023302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MGLVSNPVRFLFVALSIFSALSAISAQDVLFESDNEDPSRSAKDLGRRGLILSQDLENELGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGLVSNPVRFLFVALSIFSALSAISAQdvlfesdnedpsrsakdlgrrgliLSQDlenelgtiplnidsglgvFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLStglgrivpnlisrkhtnsAATVLYAFFGLRLLYIAwmsdpksgqkKEMEEVEEKLesgqgkttFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSlssyfyppl
Flexible Loop (DISEMBL)
MGLVSNPVRFLFVALSIFSALSAISAQDVLFesdnedpsrsakdlgrRGLILSQDLENELGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEklesgqgkttfrRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLssyfyppl
Low Complexity Region (SEG)
MGLVSNPVRflfvalsifsalsaisaQDVLFESDNEDPSRSAKDLGRRGLILSQDLENELGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQkkemeeveekleSGQGKttfrrffsrfctPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGllflcfslssyfyPPL
Disordered region (IsUnstruct)
*****NPVRFLFVALSIFSALSAISAQDVLF*****************GLILSQDLENELGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWM************************TTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY***
Disordered Region (DISOPRED)
*****NPVRFLFVALSIFSALSAI***********************************************GVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQG**TFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL
Disordered Region (DISEMBL)
MGLVSNPVRFLFVALSIFSALSAISAQDVLF************DLGRRGLILSQDLENELGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSD********************GKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL
Disordered Region (DISPRO)
**LVSNPVRFLFVALSIFSALSAISAQDVLFE**************************ELGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDP********************KTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLVSNPVRFLFVALSIFSALSAISAQDVLFESDNEDPSRSAKDLGRRGLILSQDLENELGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPxxxxxxxxxxxxxxxxxxxxxTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q93Y38	293	GDT1-like protein 3 OS=Ar	yes	no	0.996	0.965	0.751	1e-112
Q6ZIB9	282	GDT1-like protein 4 OS=Or	yes	no	0.876	0.882	0.801	1e-103
A2YXC7	281	GDT1-like protein 4 OS=Or	N/A	no	0.876	0.886	0.801	1e-103
Q2R4J1	279	GDT1-like protein 3 OS=Or	no	no	0.957	0.974	0.738	1e-102
A2ZE50	279	GDT1-like protein 3 OS=Or	N/A	no	0.957	0.974	0.738	1e-102
Q9HC07	324	Transmembrane protein 165	yes	no	0.753	0.660	0.459	5e-49
P52875	323	Transmembrane protein 165	yes	no	0.753	0.662	0.452	3e-44
Q4V899	323	Transmembrane protein 165	yes	no	0.753	0.662	0.452	5e-44
Q9C6M1	230	GDT1-like protein 4 OS=Ar	no	no	0.718	0.886	0.428	6e-43
Q9SX28	228	GDT1-like protein 5 OS=Ar	no	no	0.735	0.916	0.430	7e-43

>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1

 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/294 (75%), Positives = 252/294 (85%), Gaps = 11/294 (3%)

Query: 1   MGLVSNPVRFLFVALSIFSALSAISAQDVLFESDNEDPSR-SAKDLGRRGLILSQDLE-- 57
           MGL+SNP R + VA +IF  +S+IS QD + E++    S  S K+LGRRG++ ++ +   
Sbjct: 1   MGLISNPTRLILVA-TIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGTERIGVD 59

Query: 58  ---NELGTIPLNID---SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLS 111
              + +G + LN+D   +   VFDA  +SFSMI+V+EIGDETFIIAALMAMRHPK+TVLS
Sbjct: 60  TVVDNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLS 119

Query: 112 GALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMS-DPKSGQKK 170
           GALSALFVMT+LSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAW S D KS QKK
Sbjct: 120 GALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSTDSKSNQKK 179

Query: 171 EMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAV 230
           EMEEVEEKLESGQGKT FRR FSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA+
Sbjct: 180 EMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAI 239

Query: 231 GVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           GVA+GA+IGHT+CTSLAVVGGSMLAS+ISQRTVAT+GGLLFL FS+SSYFYPPL
Sbjct: 240 GVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYPPL 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/257 (80%), Positives = 220/257 (85%), Gaps = 8/257 (3%)

Query: 34  DNEDPSRSAKDLG------RRGLILSQDLENELGTIPLNIDSGLGVFDAFIASFSMIIVS 87
           D EDP R   D G      R  + L     ++ G   +   +GLG+FDAF AS SMI+VS
Sbjct: 28  DQEDP-RGGGDNGTARLDRRTKMFLHAARASDGGATGME-KAGLGLFDAFFASLSMILVS 85

Query: 88  EIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVL 147
           EIGDETFIIAALMAMRHPKSTVLSGALSAL VMT+LSTGLGRIVPNLISRKHTNSAATVL
Sbjct: 86  EIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLISRKHTNSAATVL 145

Query: 148 YAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILT 207
           YAFFGLRLLYIAW SD K+ QKKE+EEVEEKLE+GQGK+TFRR FSRFCTPIFLESF+LT
Sbjct: 146 YAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQGKSTFRRIFSRFCTPIFLESFVLT 205

Query: 208 FLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIG 267
           FLAEWGDRSQIATIALATHKNAVGVAVGAT+GHTICTS AVVGGSMLASKISQ TVATIG
Sbjct: 206 FLAEWGDRSQIATIALATHKNAVGVAVGATLGHTICTSFAVVGGSMLASKISQGTVATIG 265

Query: 268 GLLFLCFSLSSYFYPPL 284
           GLLFL FSLSSYFYPPL
Sbjct: 266 GLLFLGFSLSSYFYPPL 282

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/257 (80%), Positives = 220/257 (85%), Gaps = 8/257 (3%)

Query: 34  DNEDPSRSAKDLG------RRGLILSQDLENELGTIPLNIDSGLGVFDAFIASFSMIIVS 87
           D EDP R   D G      R  + L     ++ G   +   +GLG+FDAF AS SMI+VS
Sbjct: 27  DQEDP-RGGGDNGTARLDRRTKMFLHAARASDGGATGME-KAGLGLFDAFFASLSMILVS 84

Query: 88  EIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVL 147
           EIGDETFIIAALMAMRHPKSTVLSGALSAL VMT+LSTGLGRIVPNLISRKHTNSAATVL
Sbjct: 85  EIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLISRKHTNSAATVL 144

Query: 148 YAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILT 207
           YAFFGLRLLYIAW SD K+ QKKE+EEVEEKLE+GQGK+TFRR FSRFCTPIFLESF+LT
Sbjct: 145 YAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQGKSTFRRIFSRFCTPIFLESFVLT 204

Query: 208 FLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIG 267
           FLAEWGDRSQIATIALATHKNAVGVAVGAT+GHTICTS AVVGGSMLASKISQ TVATIG
Sbjct: 205 FLAEWGDRSQIATIALATHKNAVGVAVGATLGHTICTSFAVVGGSMLASKISQGTVATIG 264

Query: 268 GLLFLCFSLSSYFYPPL 284
           GLLFL FSLSSYFYPPL
Sbjct: 265 GLLFLGFSLSSYFYPPL 281

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/283 (73%), Positives = 228/283 (80%), Gaps = 11/283 (3%)

Query: 6   NPVRFLFVALSIFSALSAISAQDVLFESDNEDPSRSAKDLGRRGLILSQDLENEL---GT 62
           NP   + + L  FSA  A++        D E    S   LGRR       L+ E    G 
Sbjct: 4   NPRLLILLVLLAFSATVAVA-------EDGESTGGSKVSLGRRAGGFLHGLKKEAVVEGD 56

Query: 63  IPLNIDS-GLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMT 121
             + +D  G G+FDA  AS SMI+VSEIGDETFIIAALMAMRHPKS VLSGALSAL+VMT
Sbjct: 57  HGVALDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMT 116

Query: 122 VLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLES 181
           VLSTGLGRIVPNLISRKHTNSAATVLY FFGLRLLYIAW SDPK  QKKEMEEVEEKLES
Sbjct: 117 VLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLES 176

Query: 182 GQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHT 241
           GQGK+T RRFF RFCTPIFLE+FILTFLAEWGDRSQIATIALATHKNA+GVAVGA++GHT
Sbjct: 177 GQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHT 236

Query: 242 ICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           +CTSLAV+GGSMLASKISQRTVATIGG+LFL FS+SSYFYPPL
Sbjct: 237 VCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYPPL 279

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/283 (73%), Positives = 228/283 (80%), Gaps = 11/283 (3%)

Query: 6   NPVRFLFVALSIFSALSAISAQDVLFESDNEDPSRSAKDLGRRGLILSQDLENEL---GT 62
           NP   + + L  FSA  A++        D E    S   LGRR       L+ E    G 
Sbjct: 4   NPRLLILLVLLAFSATVAVA-------EDGESTGGSKVSLGRRAGGFLHGLKKEAVVEGD 56

Query: 63  IPLNIDS-GLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMT 121
             + +D  G G+FDA  AS SMI+VSEIGDETFIIAALMAMRHPKS VLSGALSAL+VMT
Sbjct: 57  HGVALDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMT 116

Query: 122 VLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLES 181
           VLSTGLGRIVPNLISRKHTNSAATVLY FFGLRLLYIAW SDPK  QKKEMEEVEEKLES
Sbjct: 117 VLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLES 176

Query: 182 GQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHT 241
           GQGK+T RRFF RFCTPIFLE+FILTFLAEWGDRSQIATIALATHKNA+GVAVGA++GHT
Sbjct: 177 GQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHT 236

Query: 242 ICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           +CTSLAV+GGSMLASKISQRTVATIGG+LFL FS+SSYFYPPL
Sbjct: 237 VCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYPPL 279

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1

 Score =  194 bits (494), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/235 (45%), Positives = 149/235 (63%), Gaps = 21/235 (8%)

Query: 68  DSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGL 127
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   
Sbjct: 88  QTNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLF 147

Query: 128 GRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKL-------- 179
           G     +I R +T   +TVL+A FG+R+L       P  GQ+ E+EEV+ +L        
Sbjct: 148 GYAT-TVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQE-ELEEVQAELKKKDEEFQ 205

Query: 180 -----------ESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKN 228
                      E+G   T  ++ +  F +PIF+++  LTFLAEWGDRSQ+ TI LA  ++
Sbjct: 206 RTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAARED 265

Query: 229 AVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPP 283
             GVAVG T+GH +CT LAV+GG M+A KIS RTV  IGG++FL F+ S+ F  P
Sbjct: 266 PYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320

Homo sapiens (taxid: 9606)

>sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/234 (45%), Positives = 147/234 (62%), Gaps = 20/234 (8%)

Query: 68  DSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGL 127
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   
Sbjct: 88  QTNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLF 147

Query: 128 GRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKL-------- 179
           G     +I R +T   +T L+A FG+R+L       P  GQ+ E+EEV+ +L        
Sbjct: 148 GYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQE-ELEEVQAELKKKDEEFQ 205

Query: 180 ----------ESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA 229
                     E+G      ++ +  F +PIF+++  LTFLAEWGDRSQ+ TI LA  ++ 
Sbjct: 206 RTKLLNGPDVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDP 265

Query: 230 VGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPP 283
            GVAVG T+GH +CT LAV+GG M+A KIS RTV  IGG++FL F+ S+ F  P
Sbjct: 266 YGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319

Mus musculus (taxid: 10090)

>sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1

 Score =  178 bits (451), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/234 (45%), Positives = 147/234 (62%), Gaps = 20/234 (8%)

Query: 68  DSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGL 127
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   
Sbjct: 88  QANLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLF 147

Query: 128 GRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKL-------- 179
           G     +I R +T   +T L+A FG+R+L       P  GQ+ E+EEV+ +L        
Sbjct: 148 GYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQE-ELEEVQAELKKKDEEFQ 205

Query: 180 ----------ESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA 229
                     E+G      ++ +  F +PIF+++  LTFLAEWGDRSQ+ TI LA  ++ 
Sbjct: 206 RTKLLNGPDVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDP 265

Query: 230 VGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPP 283
            GVAVG T+GH +CT LAV+GG M+A KIS RTV  IGG++FL F+ S+ F  P
Sbjct: 266 YGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319

Rattus norvegicus (taxid: 10116)

>sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/224 (42%), Positives = 134/224 (59%), Gaps = 20/224 (8%)

Query: 73  VFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVP 132
           V   F  S +M  VSEIGD+TF  AA++AMR+P+  VL+G LSAL VMT+LS  LG   P
Sbjct: 4   VLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAP 63

Query: 133 NLISRKHTNSAATVLYAFFGLRLLYIAWM-----------------SDPKSGQKKEMEEV 175
           NLISRK T+   T+L+  FGL  L+  +                  +D K+  K   +  
Sbjct: 64  NLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPKDSS 123

Query: 176 EEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVG 235
           + + E+   K   R F ++F +PIFL++F + F  EWGD+SQ+ATI LA  +N  GV +G
Sbjct: 124 KREDEN---KKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLG 180

Query: 236 ATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSY 279
             +   +CT+ AV+GG  LAS+IS+R VA  GG+LF+ F + SY
Sbjct: 181 GVVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSY 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=2 SV=1

 Score =  174 bits (441), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 132/223 (59%), Gaps = 14/223 (6%)

Query: 73  VFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVP 132
           +   F  S +M  +SEIGD+TF  AA++AMR+P+  VL+G LSAL VMT+LS  LG   P
Sbjct: 4   LLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAP 63

Query: 133 NLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSG-------------QKKEMEEVEEKL 179
           NLISRK T+   T L+  FGL  L+  +     S              +K   +    K+
Sbjct: 64  NLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDLKKTNDQSKNSKI 123

Query: 180 ESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIG 239
           E  Q K   R F + F +PIFL++F + F  EWGD+SQ+ATI LA  +N +GV +G  + 
Sbjct: 124 EDEQKKQK-RPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIVA 182

Query: 240 HTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282
            T+CT+ AV+GG  LAS+IS+R VA  GG+LF+ F + S   P
Sbjct: 183 QTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTP 225

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
255547600	832	pentatricopeptide repeat-containing prot	0.996	0.340	0.816	1e-117
224146164	284	predicted membrane protein [Populus tric	0.996	0.996	0.778	1e-111
297801164	296	hypothetical protein ARALYDRAFT_493666 [	1.0	0.959	0.75	1e-111
18421551	293	UPF0016 protein 3 [Arabidopsis thaliana]	0.996	0.965	0.751	1e-111
297735283	291	unnamed protein product [Vitis vinifera]	0.859	0.838	0.853	1e-107
147864472	291	hypothetical protein VITISV_028821 [Viti	0.859	0.838	0.853	1e-107
359476777	1008	PREDICTED: LOW QUALITY PROTEIN: putative	0.859	0.242	0.853	1e-107
224128936	261	predicted membrane protein [Populus tric	0.908	0.988	0.773	1e-106
357507739	284	Transmembrane protein [Medicago truncatu	0.904	0.904	0.811	1e-106
326526151	278	predicted protein [Hordeum vulgare subsp	0.764	0.780	0.875	1e-106

>gi|255547600|ref|XP_002514857.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545908|gb|EEF47411.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/284 (81%), Positives = 251/284 (88%), Gaps = 1/284 (0%)

Query: 1   MGLVSNPVRFLFVALSIFSALSAISAQDVLFESDNEDPSRSAKDLGRRGLILSQDLENEL 60
           MG VS+P R L +   +   L  I+AQD L E++ E+ + S KDLGRRG+I+++D++   
Sbjct: 1   MGFVSSP-RLLILFAFLLLGLPLIAAQDSLVENEKEESTASIKDLGRRGMIVTKDIDGNS 59

Query: 61  GTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVM 120
             + L++DSGLGVFDAFIAS SMIIVSEIGDETFIIAALMAMRHPKS VLSGAL+AL VM
Sbjct: 60  VNLGLHVDSGLGVFDAFIASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALTALIVM 119

Query: 121 TVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLE 180
           TVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAW SD K  QKKEMEEVEEKLE
Sbjct: 120 TVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKVSQKKEMEEVEEKLE 179

Query: 181 SGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGH 240
           SGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA+GVAVGATIGH
Sbjct: 180 SGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAVGATIGH 239

Query: 241 TICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           TICTSLAVVGGSMLASKISQ TVATIGGLLFL FSLSSYFYPPL
Sbjct: 240 TICTSLAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFYPPL 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146164|ref|XP_002325903.1| predicted membrane protein [Populus trichocarpa] gi|222862778|gb|EEF00285.1| predicted membrane protein [Populus trichocarpa]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/285 (77%), Positives = 245/285 (85%), Gaps = 2/285 (0%)

Query: 1   MGLVSNPVRFLFVALSIFSALSAISAQDVLFESDNE-DPSRSAKDLGRRGLILSQDLENE 59
           MG  SNP RF+ + ++    L  +S        +NE D SRS +DLGRRG+++    + +
Sbjct: 1   MGFRSNP-RFIILVVAAAVLLLLLSLSHTAAAQENEGDESRSFQDLGRRGMVVRNGDDAK 59

Query: 60  LGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFV 119
                L ++SGLG+FDAF AS SMI+VSEIGDETFIIAALMAMRHPKSTVLSGAL+AL V
Sbjct: 60  SAGNGLKLESGLGIFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALTALIV 119

Query: 120 MTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKL 179
           MTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAW SD KS QKKEMEEVEEKL
Sbjct: 120 MTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKSSQKKEMEEVEEKL 179

Query: 180 ESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIG 239
           E+GQGKT+FRR+FSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA+GVAVGAT+G
Sbjct: 180 EAGQGKTSFRRYFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAVGATLG 239

Query: 240 HTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           HTICTSLAVVGGS+LASKISQ TVATIGGLLFLCFSLSSYFYPPL
Sbjct: 240 HTICTSLAVVGGSLLASKISQGTVATIGGLLFLCFSLSSYFYPPL 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801164|ref|XP_002868466.1| hypothetical protein ARALYDRAFT_493666 [Arabidopsis lyrata subsp. lyrata] gi|297314302|gb|EFH44725.1| hypothetical protein ARALYDRAFT_493666 [Arabidopsis lyrata subsp. lyrata]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/296 (75%), Positives = 255/296 (86%), Gaps = 12/296 (4%)

Query: 1   MGLVSNPVRFLFVALSIFSAL--SAISAQDVLFESDNEDPSR-SAKDLGRRGLILSQDLE 57
           MGL+SNP R + VA +IF  +  S++SAQD + +++ +  S  S K+LGRRG+I ++ + 
Sbjct: 1   MGLISNPTRLVLVATTIFFFIFVSSVSAQDSVVDNNEKQESEGSGKELGRRGMIGTERIG 60

Query: 58  -----NELGTIPLNID---SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTV 109
                + +G + LN+D   +G  VFDA  +SFSMI+V+EIGDETFIIAALMAMRHPK+TV
Sbjct: 61  VDTVVDNIGALGLNLDLDSTGPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATV 120

Query: 110 LSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMS-DPKSGQ 168
           LSGALSALFVMT+LSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAW S D KS Q
Sbjct: 121 LSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSTDSKSNQ 180

Query: 169 KKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKN 228
           KKEMEEVEEKLESGQGKT FRR FSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKN
Sbjct: 181 KKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKN 240

Query: 229 AVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           A+GVA+GA+IGHT+CTSLAVVGGSMLAS+ISQRTVAT+GGLLFL FS+SSYFYPPL
Sbjct: 241 AIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYPPL 296

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18421551|ref|NP_568535.1| UPF0016 protein 3 [Arabidopsis thaliana] gi|30692937|ref|NP_851098.1| UPF0016 protein 3 [Arabidopsis thaliana] gi|75163520|sp|Q93Y38.1|GDT13_ARATH RecName: Full=GDT1-like protein 3; Flags: Precursor gi|15450794|gb|AAK96668.1| transmembrane protein FT27/PFT27-like [Arabidopsis thaliana] gi|21537321|gb|AAM61662.1| transmembrane protein FT27/PFT27-like [Arabidopsis thaliana] gi|32362303|gb|AAP80179.1| At5g36290 [Arabidopsis thaliana] gi|332006682|gb|AED94065.1| UPF0016 protein 3 [Arabidopsis thaliana] gi|332006683|gb|AED94066.1| UPF0016 protein 3 [Arabidopsis thaliana] gi|385137894|gb|AFI41208.1| uncharacterized protein UPF0016, partial [Arabidopsis thaliana]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/294 (75%), Positives = 252/294 (85%), Gaps = 11/294 (3%)

Query: 1   MGLVSNPVRFLFVALSIFSALSAISAQDVLFESDNEDPSR-SAKDLGRRGLILSQDLE-- 57
           MGL+SNP R + VA +IF  +S+IS QD + E++    S  S K+LGRRG++ ++ +   
Sbjct: 1   MGLISNPTRLILVA-TIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGTERIGVD 59

Query: 58  ---NELGTIPLNID---SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLS 111
              + +G + LN+D   +   VFDA  +SFSMI+V+EIGDETFIIAALMAMRHPK+TVLS
Sbjct: 60  TVVDNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLS 119

Query: 112 GALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMS-DPKSGQKK 170
           GALSALFVMT+LSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAW S D KS QKK
Sbjct: 120 GALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSTDSKSNQKK 179

Query: 171 EMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAV 230
           EMEEVEEKLESGQGKT FRR FSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA+
Sbjct: 180 EMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAI 239

Query: 231 GVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           GVA+GA+IGHT+CTSLAVVGGSMLAS+ISQRTVAT+GGLLFL FS+SSYFYPPL
Sbjct: 240 GVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYPPL 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735283|emb|CBI17645.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/253 (85%), Positives = 226/253 (89%), Gaps = 9/253 (3%)

Query: 41  SAKDLGRRGLILSQDLENELG---------TIPLNIDSGLGVFDAFIASFSMIIVSEIGD 91
           S  DLGRR  I+ +DLE E           ++ L++DSGLGVFDAF AS SMIIVSEIGD
Sbjct: 39  SVLDLGRRSKIVLEDLEVETTGDKKDPDSISLDLSLDSGLGVFDAFFASLSMIIVSEIGD 98

Query: 92  ETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 151
           ETFIIAALMAMRHPKS VLSGALSAL VMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF
Sbjct: 99  ETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 158

Query: 152 GLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAE 211
           GLRLLYIAW SD K+ QKKEMEEVEEKLESGQGKT+FRRFFSRFCTPIFLESFILTFLAE
Sbjct: 159 GLRLLYIAWRSDSKASQKKEMEEVEEKLESGQGKTSFRRFFSRFCTPIFLESFILTFLAE 218

Query: 212 WGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLF 271
           WGDRSQIATIALATHKNA+GVAVGATIGHTICTSLAVVGGSMLASKISQ TVAT+GGLLF
Sbjct: 219 WGDRSQIATIALATHKNAIGVAVGATIGHTICTSLAVVGGSMLASKISQGTVATVGGLLF 278

Query: 272 LCFSLSSYFYPPL 284
           L FSLSSYFYPPL
Sbjct: 279 LGFSLSSYFYPPL 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864472|emb|CAN82640.1| hypothetical protein VITISV_028821 [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/253 (85%), Positives = 226/253 (89%), Gaps = 9/253 (3%)

Query: 41  SAKDLGRRGLILSQDLENELG---------TIPLNIDSGLGVFDAFIASFSMIIVSEIGD 91
           S  DLGRR  I+ +DLE E           ++ L++DSGLGVFDAF AS SMIIVSEIGD
Sbjct: 39  SVLDLGRRSKIVLEDLEVETTGDKKDPDSISLDLSLDSGLGVFDAFFASLSMIIVSEIGD 98

Query: 92  ETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 151
           ETFIIAALMAMRHPKS VLSGALSAL VMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF
Sbjct: 99  ETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 158

Query: 152 GLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAE 211
           GLRLLYIAW SD K+ QKKEMEEVEEKLESGQGKT+FRRFFSRFCTPIFLESFILTFLAE
Sbjct: 159 GLRLLYIAWRSDSKASQKKEMEEVEEKLESGQGKTSFRRFFSRFCTPIFLESFILTFLAE 218

Query: 212 WGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLF 271
           WGDRSQIATIALATHKNA+GVAVGATIGHTICTSLAVVGGSMLASKISQ TVAT+GGLLF
Sbjct: 219 WGDRSQIATIALATHKNAIGVAVGATIGHTICTSLAVVGGSMLASKISQGTVATVGGLLF 278

Query: 272 LCFSLSSYFYPPL 284
           L FSLSSYFYPPL
Sbjct: 279 LGFSLSSYFYPPL 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/253 (85%), Positives = 226/253 (89%), Gaps = 9/253 (3%)

Query: 41  SAKDLGRRGLILSQDLENELG---------TIPLNIDSGLGVFDAFIASFSMIIVSEIGD 91
           S  DLGRR  I+ +DLE E           ++ L++DSGLGVFDAF AS SMIIVSEIGD
Sbjct: 39  SVLDLGRRSKIVLEDLEVETTGDKKDPDSISLDLSLDSGLGVFDAFFASLSMIIVSEIGD 98

Query: 92  ETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 151
           ETFIIAALMAMRHPKS VLSGALSAL VMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF
Sbjct: 99  ETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 158

Query: 152 GLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAE 211
           GLRLLYIAW SD K+ QKKEMEEVEEKLESGQGKT+FRRFFSRFCTPIFLESFILTFLAE
Sbjct: 159 GLRLLYIAWRSDSKASQKKEMEEVEEKLESGQGKTSFRRFFSRFCTPIFLESFILTFLAE 218

Query: 212 WGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLF 271
           WGDRSQIATIALATHKNA+GVAVGATIGHTICTSLAVVGGSMLASKISQ TVAT+GGLLF
Sbjct: 219 WGDRSQIATIALATHKNAIGVAVGATIGHTICTSLAVVGGSMLASKISQGTVATVGGLLF 278

Query: 272 LCFSLSSYFYPPL 284
           L FSLSSYFYPPL
Sbjct: 279 LGFSLSSYFYPPL 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128936|ref|XP_002329003.1| predicted membrane protein [Populus trichocarpa] gi|222839237|gb|EEE77588.1| predicted membrane protein [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/287 (77%), Positives = 237/287 (82%), Gaps = 29/287 (10%)

Query: 1   MGLVSNPVRFLFVALSIFSAL---SAISAQDVLFESDNEDPSRSAKDLGRRGLILSQDLE 57
           MG  SNP RFLFVA + F  L   S I+A +++    N   ++S                
Sbjct: 1   MGFRSNP-RFLFVAAAAFLLLFSFSYIAAAEIV---TNGGDAKSV--------------- 41

Query: 58  NELGTIPLNIDSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSAL 117
                  L +DSGLG+FDAF ASFSMI+VSEIGDETFIIAALMAMRHPKSTVLSGAL+AL
Sbjct: 42  -------LKLDSGLGLFDAFFASFSMIMVSEIGDETFIIAALMAMRHPKSTVLSGALTAL 94

Query: 118 FVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEE 177
            VMTVLSTGLGRIVPNLISRKHTNSAAT+LYAFFGLRLLYIAW SD K  QKKEMEEVEE
Sbjct: 95  IVMTVLSTGLGRIVPNLISRKHTNSAATILYAFFGLRLLYIAWRSDSKLSQKKEMEEVEE 154

Query: 178 KLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGAT 237
           KLESGQGKT+FRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA+GVAVGAT
Sbjct: 155 KLESGQGKTSFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGAT 214

Query: 238 IGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           +GHTICTSLAVVGGSMLASKISQ TVATIGGLLFLCFSLSSYFYPPL
Sbjct: 215 LGHTICTSLAVVGGSMLASKISQGTVATIGGLLFLCFSLSSYFYPPL 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507739|ref|XP_003624158.1| Transmembrane protein [Medicago truncatula] gi|124359160|gb|ABN05684.1| Protein of unknown function UPF0016 [Medicago truncatula] gi|355499173|gb|AES80376.1| Transmembrane protein [Medicago truncatula]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/260 (81%), Positives = 229/260 (88%), Gaps = 3/260 (1%)

Query: 26  AQDVLFESDNEDPSRSAKDLGRRGLILSQDLENELGTIPLNIDS-GLGVFDAFIASFSMI 84
           AQD L   D ++   S  DLGRR  +   D+EN    I L++DS G+G+FDAF AS SMI
Sbjct: 26  AQDSLAHDDRQESGGSV-DLGRRAKVALNDIENG-SVISLSLDSSGVGLFDAFFASLSMI 83

Query: 85  IVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAA 144
           +VSEIGDETFIIAALMAMRHPKS VLSGALSAL +MTVLSTGLGRIVPNLIS+KHTNSAA
Sbjct: 84  LVSEIGDETFIIAALMAMRHPKSIVLSGALSALIIMTVLSTGLGRIVPNLISKKHTNSAA 143

Query: 145 TVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESF 204
           TVLY FFGLRLLYIAW SDPKS QKKEMEEVEEKLE GQGKT+FRRFFSRFCTPIFLESF
Sbjct: 144 TVLYLFFGLRLLYIAWKSDPKSSQKKEMEEVEEKLEGGQGKTSFRRFFSRFCTPIFLESF 203

Query: 205 ILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVA 264
           +LTFLAEWGDRSQIATIALATHKNA+GVA GATIGHTICTS+AVVGGSMLAS+ISQR+VA
Sbjct: 204 VLTFLAEWGDRSQIATIALATHKNAIGVAAGATIGHTICTSVAVVGGSMLASRISQRSVA 263

Query: 265 TIGGLLFLCFSLSSYFYPPL 284
           T+GGLLFL FSLSSYFYPPL
Sbjct: 264 TVGGLLFLGFSLSSYFYPPL 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326526151|dbj|BAJ93252.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/217 (87%), Positives = 204/217 (94%)

Query: 68  DSGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGL 127
           +S LG+FDAF AS SMI+VSEIGDETFIIAALMAMRHPKSTVLSGALSAL VMTVLSTGL
Sbjct: 62  ESELGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTVLSTGL 121

Query: 128 GRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTT 187
           GRIVPNLISRKHTNSAATVLYAFFGLRLLYIAW SD ++ Q KE+EEV+EKLE+GQGK+T
Sbjct: 122 GRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSRASQNKEIEEVQEKLEAGQGKST 181

Query: 188 FRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLA 247
           FRR FSR CTPIFLESF+LTFLAEWGDRSQIATIALATHKNAVGVA+GAT+GHTICTS A
Sbjct: 182 FRRVFSRLCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAIGATLGHTICTSFA 241

Query: 248 VVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPPL 284
           VVGGSMLAS+ISQ TVATIGGLLFL FS+SSYFYPPL
Sbjct: 242 VVGGSMLASRISQGTVATIGGLLFLGFSVSSYFYPPL 278

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2183632	293	AT5G36290 "AT5G36290" [Arabido	1.0	0.969	0.610	9.1e-84
UNIPROTKB|F1P1B3	254	TMEM165 "Uncharacterized prote	0.25	0.279	0.647	1.2e-41
UNIPROTKB|B4DHW1	261	TMEM165 "cDNA FLJ60544, highly	0.25	0.272	0.633	2e-41
UNIPROTKB|Q9HC07	324	TMEM165 "Transmembrane protein	0.25	0.219	0.633	2e-41
MGI|MGI:894407	323	Tmem165 "transmembrane protein	0.25	0.219	0.633	4.1e-41
RGD|1306983	323	Tmem165 "transmembrane protein	0.25	0.219	0.633	4.1e-41
UNIPROTKB|E1B731	324	TMEM165 "Uncharacterized prote	0.25	0.219	0.633	5.2e-41
UNIPROTKB|F1PU63	325	TMEM165 "Uncharacterized prote	0.25	0.218	0.633	5.2e-41
ZFIN|ZDB-GENE-030131-3222	305	tmem165 "transmembrane protein	0.25	0.232	0.647	1.4e-40
FB|FBgn0260659	503	CG42542 [Drosophila melanogast	0.299	0.168	0.517	1.2e-38

TAIR|locus:2183632 AT5G36290 "AT5G36290" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 179/293 (61%), Positives = 206/293 (70%)

Query:     1 MGLVSNPVRXXXXXXXXXXXXXXXXXQDVLFESDNEDPSRSAKDLGRRGLI----LSQD- 55
             MGL+SNP R                   V+  ++ ++   S K+LGRRG++    +  D 
Sbjct:     1 MGLISNPTRLILVATIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGTERIGVDT 60

Query:    56 LENELGTIPLNID---SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSG 112
             + + +G + LN+D   +   VFDA  +SFSMI+V+EIGDETFIIAALMAMRHPK+TVLSG
Sbjct:    61 VVDNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSG 120

Query:   113 ALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMS-DPKSGQXXX 171
             ALSALFVMT+LSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAW S D KS Q   
Sbjct:   121 ALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSTDSKSNQKKE 180

Query:   172 XXXXXXXXXSGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIATIALATHKNAVG 231
                      SGQGK            PIFLESFILTFLAEWGDRSQIATIALATHKNA+G
Sbjct:   181 MEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIG 240

Query:   232 VAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGXXXXXXXXXXXXXPPL 284
             VA+GA+IGHT+CTSLAVVGGSMLAS+ISQRTVAT+GG             PPL
Sbjct:   241 VAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYPPL 293

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|F1P1B3 TMEM165 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 248 (92.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 46/71 (64%), Positives = 56/71 (78%)

Query:   198 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
             PIF+++F LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A K
Sbjct:   165 PIFVQAFTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQK 224

Query:   258 ISQRTVATIGG 268
             IS RTV  IGG
Sbjct:   225 ISVRTVTIIGG 235

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|B4DHW1 TMEM165 "cDNA FLJ60544, highly similar to Transmembrane protein TPARL" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:   198 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
             PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A K
Sbjct:   172 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQK 231

Query:   258 ISQRTVATIGG 268
             IS RTV  IGG
Sbjct:   232 ISVRTVTIIGG 242

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HC07 TMEM165 "Transmembrane protein 165" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:   198 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
             PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A K
Sbjct:   235 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQK 294

Query:   258 ISQRTVATIGG 268
             IS RTV  IGG
Sbjct:   295 ISVRTVTIIGG 305

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

MGI|MGI:894407 Tmem165 "transmembrane protein 165" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:   198 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
             PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A K
Sbjct:   234 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQK 293

Query:   258 ISQRTVATIGG 268
             IS RTV  IGG
Sbjct:   294 ISVRTVTIIGG 304

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1306983 Tmem165 "transmembrane protein 165" [Rattus norvegicus (taxid:10116)]

 Score = 242 (90.2 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:   198 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
             PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A K
Sbjct:   234 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQK 293

Query:   258 ISQRTVATIGG 268
             IS RTV  IGG
Sbjct:   294 ISVRTVTIIGG 304

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1B731 TMEM165 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 242 (90.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:   198 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
             PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A K
Sbjct:   235 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQK 294

Query:   258 ISQRTVATIGG 268
             IS RTV  IGG
Sbjct:   295 ISVRTVTIIGG 305

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1PU63 TMEM165 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 242 (90.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:   198 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
             PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A K
Sbjct:   236 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQK 295

Query:   258 ISQRTVATIGG 268
             IS RTV  IGG
Sbjct:   296 ISVRTVTIIGG 306

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-3222 tmem165 "transmembrane protein 165" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
 Identities = 46/71 (64%), Positives = 56/71 (78%)

Query:   198 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
             PIF+++  LTFLAEWGDRSQ+ATI LA  ++  GVAVG T+GH +CT LAV+GG M+A K
Sbjct:   216 PIFIQALTLTFLAEWGDRSQLATIVLAAREDPFGVAVGGTLGHCLCTGLAVIGGRMVAQK 275

Query:   258 ISQRTVATIGG 268
             IS RTV  IGG
Sbjct:   276 ISVRTVTIIGG 286

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0260659 CG42542 [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
 Identities = 44/85 (51%), Positives = 53/85 (62%)

Query:   199 IFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKI 258
             I  ++F +TFLAEWGDRSQ+ TI LA  K+  GV  G  IGH ICT LAV+GG ++ASKI
Sbjct:   416 ILAQAFTMTFLAEWGDRSQLTTIILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKI 475

Query:   259 SQRTVATIGGXXXXXXXXXXXXXPP 283
             S RTV  +GG             PP
Sbjct:   476 SVRTVTIVGGIVFIGFAIYAVAIPP 500

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2YXC7	GDT14_ORYSI	No assigned EC number	0.8015	0.8767	0.8861	N/A	no
Q93Y38	GDT13_ARATH	No assigned EC number	0.7517	0.9964	0.9658	yes	no
Q2R4J1	GDT13_ORYSJ	No assigned EC number	0.7385	0.9577	0.9749	no	no
A2ZE50	GDT13_ORYSI	No assigned EC number	0.7385	0.9577	0.9749	N/A	no
Q6ZIB9	GDT14_ORYSJ	No assigned EC number	0.8015	0.8767	0.8829	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_XIX0004 hypothetical protein (284 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	2e-43
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	3e-20
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	2e-17

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score =  145 bits (369), Expect = 2e-43
 Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 26/206 (12%)

Query: 76  AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLI 135
           A + S  M+ ++EIGD+T +IA L+AMR+ +  V +G   ALF M  L+  +G    +L+
Sbjct: 3   ALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLL 62

Query: 136 SRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRF 195
             +    A+ VL+  F + +L                 E +E  E  Q  +         
Sbjct: 63  PERPLAWASGVLFLAFAVWMLI----------------EDKEDDEEAQAASPRG------ 100

Query: 196 CTPIFLESFILTFLAEWGDRSQIATIALAT-HKNAVGVAVGATIGHTICTSLAVVGGSML 254
              +F+ +FI  FLAE GD++QIATIALA  + +   V  G T+G  + + LAV+ G ++
Sbjct: 101 ---VFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLI 157

Query: 255 ASKISQRTVATIGGLLFLCFSLSSYF 280
           A K+ +R +  I  LLFL F+L   +
Sbjct: 158 AGKLPERLLRFIAALLFLIFALVLLW 183

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 82.1 bits (204), Expect = 3e-20
 Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 200 FLESFILTFLAEWGDRSQIATIALATH--KNAVGVAVGATIGHTICTSLAVVGGSMLASK 257
           FL SF+L FLAE GD++Q+ATIALA    ++   V +GAT+   + T LAV+ G  LA+ 
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 258 ISQRTVATIGGLLFLCF 274
           +  R +  + G+LFL F
Sbjct: 61  LPPRVLHFVAGVLFLAF 77

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 74.4 bits (184), Expect = 2e-17
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 77  FIASFSMIIVSEIGDETFIIAALMAMRHPKST--VLSGALSALFVMTVLSTGLGRIVPNL 134
           F+ SF +I ++E+GD+T +    +A R+ +S   V  GA  AL + T+L+  LGR +  L
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 135 ISRKHTNSAATVLYAFFG 152
           +  +  +  A VL+  FG
Sbjct: 61  LPPRVLHFVAGVLFLAFG 78

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
KOG2881	294	consensus Predicted membrane protein [Function unk	100.0
COG2119	190	Predicted membrane protein [Function unknown]	100.0
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.9
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.89
COG2119	190	Predicted membrane protein [Function unknown]	99.82
KOG2881	294	consensus Predicted membrane protein [Function unk	99.65
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	98.19
COG4280	236	Predicted membrane protein [Function unknown]	98.15
PRK11469	188	hypothetical protein; Provisional	97.98
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	97.72
COG1971	190	Predicted membrane protein [Function unknown]	97.68
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	97.1
PF03741	183	TerC: Integral membrane protein TerC family; Inter	96.49
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	96.43
COG4300	205	CadD Predicted permease, cadmium resistance protei	96.4
PRK10229	206	threonine efflux system; Provisional	95.93
COG0730	258	Predicted permeases [General function prediction o	95.9
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	95.84
PF01914	203	MarC: MarC family integral membrane protein; Inter	95.55
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	95.42
PRK10621	266	hypothetical protein; Provisional	95.14
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	95.12
TIGR00145	283	FTR1 family protein. A characterized member from y	95.08
PRK09304	207	arginine exporter protein; Provisional	94.77
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	94.66
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	94.6
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	94.5
COG0861	254	TerC Membrane protein TerC, possibly involved in t	94.34
PF01925	240	TauE: Sulfite exporter TauE/SafE; InterPro: IPR002	93.27
PF03239	306	FTR1: Iron permease FTR1 family; InterPro: IPR0049	93.11
PRK10995	221	inner membrane protein; Provisional	92.62
PRK10958	212	leucine export protein LeuE; Provisional	92.57
COG4280	236	Predicted membrane protein [Function unknown]	90.51
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	90.36
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	90.31
PRK11111	214	hypothetical protein; Provisional	90.19
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	88.38
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	87.84
PRK10739	197	putative antibiotic transporter; Provisional	87.16
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	86.72
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	86.61
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	85.55
PF11139	214	DUF2910: Protein of unknown function (DUF2910); In	81.46
TIGR00948	177	2a75 L-lysine exporter.	80.63
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	80.24

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.3e-59  Score=431.88  Aligned_cols=272  Identities=47%  Similarity=0.707  Sum_probs=223.6

Q ss_pred             cCCCcchhHHHHHHHHHHHHhhhhchhccccCCCCCchhhhhccccccccccccccccccccccCC-CCchHHHHHHHHH
Q 023302            4 VSNPVRFLFVALSIFSALSAISAQDVLFESDNEDPSRSAKDLGRRGLILSQDLENELGTIPLNIDS-GLGVFDAFIASFS   82 (284)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~sF~   82 (284)
                      .+|+.| +++.. +.++.....+++..+++.++    ..+..++-+...........++ +.++++ ..++.++|..||+
T Consensus         2 ~~s~~~-~~v~~-~~~l~~~~~~~~~~~~~~~~----~~V~~~~~~v~~l~~~~~a~~~-~~d~~~~~~s~~~~f~~SiS   74 (294)
T KOG2881|consen    2 KFSATR-LLVSL-IILLPFVTLSEADAVKDSDK----VDVKLSLIAVVTLITLAEAHKS-NADISSTASSFLQGFTASIS   74 (294)
T ss_pred             CcchhH-HHHHH-HHHHHHHhhhhccccccchh----hhccCCccceeeccchhhcCcc-ccccccchHHHHHHHHHhhh
Confidence            457777 66665 55555555566555553111    2222222222222222221111 122333 4679999999999


Q ss_pred             HHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023302           83 MIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMS  162 (284)
Q Consensus        83 lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~  162 (284)
                      |||++|+||||++++++|||||+|..||.|++.||.+||+|++++|+..++++|++|+++++++||++||+|+|||+|++
T Consensus        75 mI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~  154 (294)
T KOG2881|consen   75 MIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEM  154 (294)
T ss_pred             eeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcchhHHHHHhhhcc-------------CC-----CccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHh
Q 023302          163 DPKSGQKKEMEEVEEKLESG-------------QG-----KTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALA  224 (284)
Q Consensus       163 ~~~~~~~~e~eEve~~l~~~-------------~~-----~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LA  224 (284)
                      +|+++ +||+||+|+|++..             ++     ++..||++.++++|+|+++|.++|++||||||||+|++||
T Consensus       155 ~~~~~-~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~aEwGDRSQlaTI~la  233 (294)
T KOG2881|consen  155 SPSEG-QEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALA  233 (294)
T ss_pred             CCccc-hhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            87765 88999999987541             11     2345777788899999999999999999999999999999


Q ss_pred             cccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccCC
Q 023302          225 THKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPP  283 (284)
Q Consensus       225 a~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~~  283 (284)
                      ++.||+.|++|+.+||.+||+++|+.|++++++|++|.+..++|++|+.||+..++.+|
T Consensus       234 A~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i~~~~  292 (294)
T KOG2881|consen  234 ADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVYIFQGF  292 (294)
T ss_pred             cccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999988776

>COG2119 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1e-48  Score=344.75  Aligned_cols=183  Identities=36%  Similarity=0.549  Sum_probs=164.1

Q ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 023302           74 FDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGL  153 (284)
Q Consensus        74 ~~~f~~sF~lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~  153 (284)
                      ++++..|.++|++||+|||||+++++||+||+|++|+.|+..|+..||.+++++|++.+.++|++++++..+++|+.||+
T Consensus         1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav   80 (190)
T COG2119           1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAV   80 (190)
T ss_pred             ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccC-CcEe
Q 023302          154 RLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKN-AVGV  232 (284)
Q Consensus       154 ~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~-~~~V  232 (284)
                      |++++.      .+++   ||.+       ..   ++      ..+|.++|+++|++|||||||++|++||++++ ||.|
T Consensus        81 ~~l~ed------k~~~---~e~~-------~~---~~------~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V  135 (190)
T COG2119          81 WMLIED------KEDD---EEAQ-------AA---SP------RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAV  135 (190)
T ss_pred             HHhccc------cccc---cccc-------cc---cc------ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceee
Confidence            999722      1111   1111       00   11      15899999999999999999999999999875 6999


Q ss_pred             eehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302          233 AVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY  281 (284)
Q Consensus       233 ~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~  281 (284)
                      ++|+++||++||.++|++|+++++|+|+|.++.++|++|++||+..+|.
T Consensus       136 ~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~  184 (190)
T COG2119         136 FAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ  184 (190)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887664

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.90  E-value=2.1e-24  Score=167.19  Aligned_cols=76  Identities=51%  Similarity=0.726  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhhhcChHHHHHHHHhccc--CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 023302          200 FLESFILTFLAEWGDRSQIATIALATHK--NAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFS  275 (284)
Q Consensus       200 fl~aF~liFLAE~GDKTQLati~LAa~~--~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fG  275 (284)
                      |+++|.++|++|||||||++|++||+||  +|+.|++|+++|++++|.+++++|+++.+++|++++++++|++|++||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5799999999999999999999999998  899999999999999999999999999999999999999999999997

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.89  E-value=1.9e-23  Score=161.80  Aligned_cols=76  Identities=32%  Similarity=0.456  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhhcccHHHHHHHHHhccC--CCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 023302           77 FIASFSMIIVSEIGDETFIIAALMAMRH--PKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFG  152 (284)
Q Consensus        77 f~~sF~lIflAElGDKTql~a~~LAar~--~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG  152 (284)
                      |+++|.++|++|+|||||++++.||+||  +++.|++|+.+|++++|++++++|+++++++|+++++++++++|++||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999999  566799999999999999999999999999999999999999999987

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.82  E-value=8.4e-20  Score=161.71  Aligned_cols=86  Identities=23%  Similarity=0.427  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHhccCCC-cchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 023302           74 FDAFIASFSMIIVSEIGDETFIIAALMAMRHPK-STVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFG  152 (284)
Q Consensus        74 ~~~f~~sF~lIflAElGDKTql~a~~LAar~~~-~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG  152 (284)
                      ...|.++|.++|++|||||||++|+.||++|+. +.||+|+.+|+++|++++|+.|+++++++|++.++.++|++|++||
T Consensus        99 ~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa  178 (190)
T COG2119          99 RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA  178 (190)
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            349999999999999999999999999999997 6699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 023302          153 LRLLYIA  159 (284)
Q Consensus       153 ~~~L~~a  159 (284)
                      +..+|+.
T Consensus       179 l~~~~~~  185 (190)
T COG2119         179 LVLLWQV  185 (190)
T ss_pred             HHHHHHH
Confidence            9999854

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.65  E-value=6e-17  Score=150.21  Aligned_cols=84  Identities=24%  Similarity=0.352  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 023302           75 DAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLR  154 (284)
Q Consensus        75 ~~f~~sF~lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~  154 (284)
                      ..|+.+|+++|++|||||+|++|+.||++-+++.|++|+..++.+||.+||+.|++++++|+.+.+.+++|++|+.||+.
T Consensus       207 pifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~  286 (294)
T KOG2881|consen  207 PIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLV  286 (294)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 023302          155 LLYI  158 (284)
Q Consensus       155 ~L~~  158 (284)
                      .+++
T Consensus       287 ~i~~  290 (294)
T KOG2881|consen  287 YIFQ  290 (294)
T ss_pred             HHhc
Confidence            9873

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=98.19  E-value=7.5e-05  Score=67.29  Aligned_cols=51  Identities=16%  Similarity=0.266  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023302          113 ALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSD  163 (284)
Q Consensus       113 a~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~  163 (284)
                      ......+|+.++..+|+.+.+++|+++-++++++++++.|+|+++|+++.+
T Consensus        36 ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~   86 (206)
T TIGR02840        36 IAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPK   86 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334455899999999999999999999999999999999999999999854

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG4280 Predicted membrane protein [Function unknown]

Probab=98.15  E-value=2.3e-05  Score=71.31  Aligned_cols=168  Identities=22%  Similarity=0.269  Sum_probs=113.4

Q ss_pred             HhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCcchhHHHH
Q 023302          100 MAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDP---KSGQKKEMEEVE  176 (284)
Q Consensus       100 LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~---~~~~~~e~eEve  176 (284)
                      ...-|+++.-+.|+.+++++.-.++.++|..+ .++|.+++++++|++.+.||..-.+.+.|...   +.++||.   .|
T Consensus        27 vg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~---le  102 (236)
T COG4280          27 VGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEK---LE  102 (236)
T ss_pred             hhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhh---Hh
Confidence            33444556688899999999999999999987 58999999999999999999999988776521   1121111   22


Q ss_pred             HhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcc-cCCcEeeehHHHHHHHHHHHHHHHHHHhh
Q 023302          177 EKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATH-KNAVGVAVGATIGHTICTSLAVVGGSMLA  255 (284)
Q Consensus       177 ~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~-~~~~~V~~Ga~la~~l~t~laV~~G~~l~  255 (284)
                      |.+.-++..+..    ++   -.+.++|-.+.+=  |=.--++.+++.+. ..+..-..|+..|..+.-.++.++-+.++
T Consensus       103 E~~~ldq~e~g~----~~---la~l~~fk~v~Le--glEv~~iVialgaa~sqwleAi~gagfA~vlvlvl~~~lh~pla  173 (236)
T COG4280         103 EGIVLDQEEEGF----SK---LALLVVFKVVALE--GLEVSLIVIALGAASSQWLEAIMGAGFASVLVLVLTAILHSPLA  173 (236)
T ss_pred             hhhhcccccccc----hh---hhHHHHhHHHHHh--hheeeeeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh
Confidence            222211111111    11   1334444333321  22233455566544 34566778888888888888888877776


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302          256 SKISQRTVATIGGLLFLCFSLSSYFY  281 (284)
Q Consensus       256 ~~ip~~~i~~~agilFl~fGl~~L~~  281 (284)
                       ++|++.+++.+|.+...||.+=+-+
T Consensus       174 -rvpe~~lKfvag~lL~sfGtfWlge  198 (236)
T COG4280         174 -RVPEPHLKFVAGALLFSFGTFWLGE  198 (236)
T ss_pred             -hCCchhHHHHHHHHHHHhhHHHhcc
Confidence             6999999999999999999864443

>PRK11469 hypothetical protein; Provisional

Probab=97.98  E-value=0.00027  Score=63.06  Aligned_cols=161  Identities=17%  Similarity=0.284  Sum_probs=91.5

Q ss_pred             HHHHHHHHhccCCC--cc--hhHH--HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023302           93 TFIIAALMAMRHPK--ST--VLSG--ALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKS  166 (284)
Q Consensus        93 Tql~a~~LAar~~~--~~--Vf~G--a~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~  166 (284)
                      .+-+.+....|.++  +.  ....  ...-..+|+.++-.+|+++.+++|+ +-|++++.+.++.|.||+||+++.+++ 
T Consensus        17 aF~v~ia~G~~~~~~~~~~~~~~~l~~g~~q~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~~~~~-   94 (188)
T PRK11469         17 AFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFRGADD-   94 (188)
T ss_pred             HHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence            44555666655432  11  1222  2223467888888899999999877 779999999999999999999874321 


Q ss_pred             CCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhc-ccCCcEeeehHHHHHHHHHH
Q 023302          167 GQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALAT-HKNAVGVAVGATIGHTICTS  245 (284)
Q Consensus       167 ~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa-~~~~~~V~~Ga~la~~l~t~  245 (284)
                         +| +|.+.       +.+.+        ..+..+..+..     | .--+-++++. ..+++...+-.-+-.++++.
T Consensus        95 ---~~-~~~~~-------~~~~~--------~~l~LaiAtSi-----D-AlavGi~~~~~g~~~~~~~~~ig~~s~~~~~  149 (188)
T PRK11469         95 ---ED-EEPRR-------RHGFW--------LLVTTAIATSL-----D-AMAVGVGLAFLQVNIIATALAIGCATLIMST  149 (188)
T ss_pred             ---cc-ccccc-------CCCHH--------HHHHHHHHHHH-----H-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence               10 11000       00000        11111111100     0 0001111221 12333333333344456777


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302          246 LAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY  281 (284)
Q Consensus       246 laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~  281 (284)
                      .++.+|+.+++++ .++...++|++.+++|+..+++
T Consensus       150 ~G~~lG~~~g~~~-g~~a~~lgG~iLI~iGi~il~~  184 (188)
T PRK11469        150 LGMMVGRFIGSII-GKKAEILGGLVLIGIGVQILWT  184 (188)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888777655 4678999999999999998764

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=97.72  E-value=0.0015  Score=56.46  Aligned_cols=168  Identities=18%  Similarity=0.206  Sum_probs=94.5

Q ss_pred             HHHHHHhccCCCcc---hhHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 023302           95 IIAALMAMRHPKST---VLSGALSALFVMTVLSTGLGRIVPNLIS--RKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQK  169 (284)
Q Consensus        95 l~a~~LAar~~~~~---Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip--~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~  169 (284)
                      +..+--+++++++.   +.+|...+-.+...+++..-..+.+..|  ..++++++++..+.+|.+++++.    ++.+++
T Consensus        12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~----~~~~~~   87 (191)
T PF01810_consen   12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSK----FSSKSS   87 (191)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc----cCcchh
Confidence            44555666776543   7789999988888888877776654333  45678889988889998888532    221111


Q ss_pred             chhHHHHHhhhccCCCccccccc-cccchh---hHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHH
Q 023302          170 KEMEEVEEKLESGQGKTTFRRFF-SRFCTP---IFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTS  245 (284)
Q Consensus       170 ~e~eEve~~l~~~~~~~~~~~~~-~~~~~~---~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~  245 (284)
                       +.++.+    .+...+.+++.. -...+|   +|+.++...|+.+--+.+|...+.+           |..++..+...
T Consensus        88 -~~~~~~----~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~w~~  151 (191)
T PF01810_consen   88 -TQSEAK----KQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFIL-----------GIFLGSLLWFL  151 (191)
T ss_pred             -hhhhhc----cccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHH-----------HHHHHHHHHHH
Confidence             111111    000011111100 001111   3455555555554333444443333           44444444444


Q ss_pred             HHHHHHHHhhhcCCHH---HHHHHHHHHHHHHHHHHhccC
Q 023302          246 LAVVGGSMLASKISQR---TVATIGGLLFLCFSLSSYFYP  282 (284)
Q Consensus       246 laV~~G~~l~~~ip~~---~i~~~agilFl~fGl~~L~~~  282 (284)
                      .-...++.+.+++..+   ++++++|++|+.+|++.++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g  191 (191)
T PF01810_consen  152 LLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG  191 (191)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4455555555555443   889999999999999998864

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG1971 Predicted membrane protein [Function unknown]

Probab=97.68  E-value=0.0013  Score=59.34  Aligned_cols=45  Identities=16%  Similarity=0.353  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhhhhccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023302          119 VMTVLSTGLGRIVPNLIS---RKHTNSAATVLYAFFGLRLLYIAWMSD  163 (284)
Q Consensus       119 l~t~LaV~~G~~l~~~ip---~~~~~~iagvlFl~FG~~~L~~a~~~~  163 (284)
                      +.+.+.-++|.+..+++|   ..+-||+++++..+.|+||+||+++++
T Consensus        45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~~   92 (190)
T COG1971          45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKNE   92 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            344555556665555555   678899999999999999999998864

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=97.10  E-value=0.0044  Score=55.85  Aligned_cols=153  Identities=14%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCC
Q 023302          106 KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGK  185 (284)
Q Consensus       106 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~  185 (284)
                      ++.|.+|-.++..+.-..|...+..+. ++|++|+--.-|++=+.+|++.++   +.+ |+    |++|++++.++    
T Consensus        25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~---~~~-~~----~e~~~~~~~~~----   91 (191)
T PF03596_consen   25 RRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALF---SGE-DD----DEEEAEEKLNS----   91 (191)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH---cCC-Cc----ccccccccccc----
Confidence            466999999999999888888877765 999999978888889999999886   222 11    11222222111    


Q ss_pred             ccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCC-----H
Q 023302          186 TTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS-----Q  260 (284)
Q Consensus       186 ~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip-----~  260 (284)
                      ++.+        +.+ -+...+.+|-=||+==+=+=-+|+..  +.=+.-..+-..++.++-+.++++++++=+     +
T Consensus        92 ~~~~--------~~i-~~Va~iTiAnGgDNigIYiP~Fa~~s--~~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~le  160 (191)
T PF03596_consen   92 PKSN--------SLI-LTVAAITIANGGDNIGIYIPLFASLS--LAELIVILIVFLILVGVWCFLAYKLARIPIIAEFLE  160 (191)
T ss_pred             cccc--------chh-HHhhhhhhhcCCCeEEEeehhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            0000        112 22222333334554322222222211  111111223334555666777777775432     6


Q ss_pred             HHHHHHHHHHHHHHHHHHhccC
Q 023302          261 RTVATIGGLLFLCFSLSSYFYP  282 (284)
Q Consensus       261 ~~i~~~agilFl~fGl~~L~~~  282 (284)
                      |+=+++.-++|++.|++-+++.
T Consensus       161 ryg~~l~p~v~I~LGi~Il~es  182 (191)
T PF03596_consen  161 RYGRWLVPIVYIGLGIYILIES  182 (191)
T ss_pred             HhcccHHHHHHHHhCceeeEeC
Confidence            7778999999999999988765

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=96.49  E-value=0.21  Score=44.47  Aligned_cols=163  Identities=15%  Similarity=0.201  Sum_probs=90.8

Q ss_pred             ccHHHHHHHHHhc---cCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023302           90 GDETFIIAALMAM---RHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKS  166 (284)
Q Consensus        90 GDKTql~a~~LAa---r~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~  166 (284)
                      +|+-.+++++...   +++++..+.|...|.++=.++- ..|.++-+..  .++++++|+.-+.-|.+++++.      .
T Consensus        12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i-~~~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~~------~   82 (183)
T PF03741_consen   12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFI-FLASWLLSIF--PWILLIGGLFLLYIAIKLLHEE------R   82 (183)
T ss_pred             hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc------c
Confidence            5665555554433   2234568999999996655554 4454444432  5555555554444444444321      1


Q ss_pred             CCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcCh-----HHHHHHHHhcccCCcEeeehHHHHHH
Q 023302          167 GQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDR-----SQIATIALATHKNAVGVAVGATIGHT  241 (284)
Q Consensus       167 ~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDK-----TQLati~LAa~~~~~~V~~Ga~la~~  241 (284)
                      ++++|.++.+++ + +  ..+.+       .+.++.+...+   |.=|=     +=+++.+++  .+++.++.|..++..
T Consensus        83 ~~d~~~~~~~~~-~-~--~~~~~-------~~~~~~~v~~I---~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~  146 (183)
T PF03741_consen   83 DEDPENAEVEEE-K-K--FFPVS-------KSSLWLAVIQI---ELADLVFSLDSVLAAVGIT--DDFFIVITGNIISIL  146 (183)
T ss_pred             ccccchhhhhhh-h-c--cccch-------hHHHHHHHHHH---HHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHH
Confidence            111111111111 0 0  00000       12344444433   33342     334555555  778999999999998


Q ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302          242 ICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYF  280 (284)
Q Consensus       242 l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~  280 (284)
                      ..-..+-.+.+++.+   -.++++.++.+-...|+.++.
T Consensus       147 ~m~~~~~~~~~~l~~---~p~l~~~~~~~L~~ig~~li~  182 (183)
T PF03741_consen  147 LMRFLSFLLAKLLER---FPYLKYLAAAILGFIGVKLIL  182 (183)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888776   467888888888888877654

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=96.43  E-value=0.16  Score=48.91  Aligned_cols=183  Identities=17%  Similarity=0.183  Sum_probs=96.6

Q ss_pred             HHHHHHHhh---cccHHHHHHHHHhcc-CC----CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 023302           80 SFSMIIVSE---IGDETFIIAALMAMR-HP----KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF  151 (284)
Q Consensus        80 sF~lIflAE---lGDKTql~a~~LAar-~~----~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~F  151 (284)
                      .|....+-|   -+|+-+..+++++.+ -|    ++..+.|...|++.=.+ -+.+|.++-+.+|  |       ++.+|
T Consensus        64 ~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i-~i~~g~~Li~~f~--w-------i~~if  133 (302)
T TIGR03718        64 EFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAI-FIALGAALIEQFH--W-------VLYIF  133 (302)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhH--H-------HHHHH
Confidence            344444444   389999999988763 33    35578899888876544 4555555544333  3       46667


Q ss_pred             HHHHHHHHHhcCCCCCCcchhHHHHHhh----h-----cc--CCCccccccccc-cchhhHHHHHHHHHHhhhcChHHH-
Q 023302          152 GLRLLYIAWMSDPKSGQKKEMEEVEEKL----E-----SG--QGKTTFRRFFSR-FCTPIFLESFILTFLAEWGDRSQI-  218 (284)
Q Consensus       152 G~~~L~~a~~~~~~~~~~~e~eEve~~l----~-----~~--~~~~~~~~~~~~-~~~~~fl~aF~liFLAE~GDKTQL-  218 (284)
                      |++++|.++++-.+++++++.++  ...    .     ++  .+.+-..|..++ ..+| ++.+   +..-|.=|-..= 
T Consensus       134 G~fLi~~a~k~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~~tp-l~~v---li~Ie~~DlvFsl  207 (302)
T TIGR03718       134 GAFLLYTGIKMLFEGDEEDDPEN--NPLVRLLRRVLPVTDKYHGDRFFVRENGKRYATP-LFLV---LVLVETTDLIFAV  207 (302)
T ss_pred             HHHHHHHHHHHHhhcccccCccc--cHHHHHHHhhcCCCccccCCceeeeecCceecCc-HHHH---HHHHHHHHHHHhh
Confidence            77777776665322111111111  110    0     00  011100011111 1223 3333   334455553321 


Q ss_pred             --HHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302          219 --ATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY  281 (284)
Q Consensus       219 --ati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~  281 (284)
                        .....|..++|+.|+.+...|.+..-.+--++.+++.+   -.++++.++.+-...|+.++..
T Consensus       208 DSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~r---f~~L~~~~a~iL~fIGvkmll~  269 (302)
T TIGR03718       208 DSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLER---FHYLKYGLAVILVFIGVKMLLH  269 (302)
T ss_pred             ccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHh
Confidence              12223334679999999888777555555555665554   3567777777777778776654

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=96.40  E-value=0.014  Score=52.73  Aligned_cols=165  Identities=16%  Similarity=0.144  Sum_probs=91.6

Q ss_pred             hhcccHHHHHHHHHhccC---CCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023302           87 SEIGDETFIIAALMAMRH---PKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSD  163 (284)
Q Consensus        87 AElGDKTql~a~~LAar~---~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~  163 (284)
                      |-==|--=+....+|.+-   .++.+++|=.++....-..|.. +.++.+++|++|+--.-|..=+..|+|.++.+++  
T Consensus        14 aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~-~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~d~--   90 (205)
T COG4300          14 ATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLL-FAFVLNFVPEEWILGLLGLIPIYLGIKVLILGDD--   90 (205)
T ss_pred             HhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHH-HHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcccC--
Confidence            333344445555666554   2345899988888776555544 4447789999999988899999999999873322  


Q ss_pred             CCCCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHH--
Q 023302          164 PKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHT--  241 (284)
Q Consensus       164 ~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~--  241 (284)
                        |+    +||.+|+++....++    .        +.+....+|-.==||+--          =..+.|++--....  
T Consensus        91 --d~----e~~~~e~L~~~~~k~----l--------v~tV~~vT~AscG~DNIg----------vyvP~F~tl~~~~llv  142 (205)
T COG4300          91 --DG----EEEAKEELAFKKNKN----L--------VGTVAIVTFASCGADNIG----------VFVPYFATLNLANLLV  142 (205)
T ss_pred             --cC----chhhhHHHHhccccc----e--------EEEEEEEEEeccCCcceE----------EEeeeeecccHHHHHH
Confidence              11    123333333110110    0        001000001000112100          02333433322222  


Q ss_pred             ------HHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHHHhccC
Q 023302          242 ------ICTSLAVVGGSMLASKIS-----QRTVATIGGLLFLCFSLSSYFYP  282 (284)
Q Consensus       242 ------l~t~laV~~G~~l~~~ip-----~~~i~~~agilFl~fGl~~L~~~  282 (284)
                            ++-.+=+..++.+++.=|     +++=|++-.+++++.|++.+++.
T Consensus       143 ~l~vF~v~I~iL~~~a~~la~ip~I~evlEk~sr~i~~~V~I~LGlfIl~E~  194 (205)
T COG4300         143 ALLVFLVMIYILVFLAQKLAQIPPIGEVLEKYSRWIVAFVYIGLGLFILYEN  194 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhheeEEeC
Confidence                  223344556777776444     67889999999999999998875

>PRK10229 threonine efflux system; Provisional

Probab=95.93  E-value=0.53  Score=41.45  Aligned_cols=74  Identities=9%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             HHHHhhcccHHHHHHHHHhccCCCcc---hhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHH
Q 023302           83 MIIVSEIGDETFIIAALMAMRHPKST---VLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus        83 lIflAElGDKTql~a~~LAar~~~~~---Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~  157 (284)
                      ++...-.|. ..+.++--+.+|+++.   ..+|...|..+...++...-..+....|.  ..+++++++-.+.+|..+++
T Consensus        13 ~~~~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~   91 (206)
T PRK10229         13 IVALMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR   91 (206)
T ss_pred             HHHhcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444565 6677777777877543   57788888888888877766666555553  34566665555667776664

>COG0730 Predicted permeases [General function prediction only]

Probab=95.90  E-value=0.24  Score=45.03  Aligned_cols=171  Identities=14%  Similarity=0.068  Sum_probs=97.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCc
Q 023302          107 STVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKT  186 (284)
Q Consensus       107 ~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~  186 (284)
                      ..+-.-...-+...+.+...+|.++..++|+++.+.+-+++.+..++++++.-.+..++    ++.++.......-...-
T Consensus        69 ~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  144 (258)
T COG0730          69 GNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKAE----DRAARLRPLLFALALLI  144 (258)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccccccc----ccccccCcchhHHHHHH
Confidence            33666666677777789999999999999999999989999999999998742110000    00000000000000000


Q ss_pred             c-ccccccccch--hhHHHHHHHHHHhhhcChHHHHHHHHhc---------ccC--CcEeeehHHHHHHHHHHHHHHHHH
Q 023302          187 T-FRRFFSRFCT--PIFLESFILTFLAEWGDRSQIATIALAT---------HKN--AVGVAVGATIGHTICTSLAVVGGS  252 (284)
Q Consensus       187 ~-~~~~~~~~~~--~~fl~aF~liFLAE~GDKTQLati~LAa---------~~~--~~~V~~Ga~la~~l~t~laV~~G~  252 (284)
                      . .--.++-...  .-+...-.+..+....+|--.+|-....         .|-  .-.+-......+.+.+.++..+|.
T Consensus       145 g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~lG~  224 (258)
T COG0730         145 GFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAYLGA  224 (258)
T ss_pred             HHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence            0 0000000000  1123333444444454443333322211         011  111222222267888899999999


Q ss_pred             HhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302          253 MLASKISQRTVATIGGLLFLCFSLSSYFY  281 (284)
Q Consensus       253 ~l~~~ip~~~i~~~agilFl~fGl~~L~~  281 (284)
                      ++.+++|++.++++-+.+.+..++.+++.
T Consensus       225 ~l~~~~~~~~lr~~~~~~~~~~~~~~~~~  253 (258)
T COG0730         225 RLARRLSPKVLRRLFALVLLAVAIKLLLR  253 (258)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887654

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=95.84  E-value=0.15  Score=43.94  Aligned_cols=61  Identities=10%  Similarity=0.037  Sum_probs=40.1

Q ss_pred             HHHHhccCCCc---chhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHH
Q 023302           97 AALMAMRHPKS---TVLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus        97 a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~  157 (284)
                      ++.-+.+++++   .+.+|..++..+...+++..-..+-+..|.  .++++++++..+.+|..+++
T Consensus         9 ~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~   74 (185)
T TIGR00949         9 VMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR   74 (185)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555432   377888999999888888755555555553  55677777666678877664

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=95.55  E-value=0.47  Score=42.75  Aligned_cols=150  Identities=15%  Similarity=0.235  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCc
Q 023302          109 VLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKT  186 (284)
Q Consensus       109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~  186 (284)
                      ..-.+..+++++ .+..++|+++-++  ++..-.++.+|++.+..|+.|++    .+++.++.++.|+.|.+ +  ..+.
T Consensus        40 a~~a~~~a~~il-l~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~----~~~~~~~~~~~~~~~~~-~--~~~~  111 (203)
T PF01914_consen   40 ARRASIIAFIIL-LIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLF----GSPSSEKSSPDEKEEAK-D--AEDI  111 (203)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC----CCCcccccccchhhhhc-c--cccc
Confidence            343444444444 4556678777664  58888999999999999999986    22221111111111100 0  0111


Q ss_pred             cccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCC---cEeeehHHHHHHHHHHHHHHHHHHhhhcCC---H
Q 023302          187 TFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA---VGVAVGATIGHTICTSLAVVGGSMLASKIS---Q  260 (284)
Q Consensus       187 ~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~---~~V~~Ga~la~~l~t~laV~~G~~l~~~ip---~  260 (284)
                      ...+.    .           +--=-|.-|=-+++.++++++.   .....++.+...+.+.+.-..++++.+++.   .
T Consensus       112 ai~PL----a-----------~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~  176 (203)
T PF01914_consen  112 AIVPL----A-----------IPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGL  176 (203)
T ss_pred             eeccc----c-----------hhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence            11110    0           1111244444455566665543   344555566666667777777888888775   4


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 023302          261 RTVATIGGLLFLCFSLSSYFY  281 (284)
Q Consensus       261 ~~i~~~agilFl~fGl~~L~~  281 (284)
                      +.+.++.|++-.++|+.++..
T Consensus       177 ~vi~Ri~Glil~aiavq~i~~  197 (203)
T PF01914_consen  177 QVITRIMGLILAAIAVQMILS  197 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            667888999999999877654

These proteins may be transporters. ; GO: 0016021 integral to membrane

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=95.42  E-value=0.14  Score=46.99  Aligned_cols=157  Identities=22%  Similarity=0.187  Sum_probs=85.9

Q ss_pred             ccHHHHHHHHHh---ccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023302           90 GDETFIIAALMA---MRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKS  166 (284)
Q Consensus        90 GDKTql~a~~LA---ar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~  166 (284)
                      +|+-.+++++..   .+++++..+.|...|.++=-++.......+ +   ..++++       ++|+.++|.+++.-.++
T Consensus         9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~---~~~l~~-------iGG~~Ll~~~~k~l~~~   77 (215)
T TIGR03716         9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-K---FWWIKA-------IGALYLLYLAIKHFRKK   77 (215)
T ss_pred             hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHH-------HHHHHHHHHHHHHHHhc
Confidence            455555554433   122345588999999887666655544433 3   225444       44455555554442111


Q ss_pred             CCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcCh-----HHHHHHHHhcccCCcEeeehHHHHHH
Q 023302          167 GQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDR-----SQIATIALATHKNAVGVAVGATIGHT  241 (284)
Q Consensus       167 ~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDK-----TQLati~LAa~~~~~~V~~Ga~la~~  241 (284)
                      +++++.+|.+       .+..         .+.|+.+...+   |.=|=     +=++.+++  ..+++.++.|..++..
T Consensus        78 ~~~~~~~~~~-------~~~~---------~~~f~~av~~I---~~~DlvFSlDSV~A~~gi--t~~~~ii~~g~~~sIl  136 (215)
T TIGR03716        78 KKGKEDEEAE-------KKKA---------HSGFWRTVLKV---ELMDIAFSVDSILAAVAL--SGQFWVVFLGGIIGIL  136 (215)
T ss_pred             cccccccccc-------cccc---------cchHHHHHHHH---HHHHHHHHhhhHHHHHHh--ccChHHHHHHHHHHHH
Confidence            1111111100       0000         01234443333   33342     23344444  3688999999999988


Q ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302          242 ICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY  281 (284)
Q Consensus       242 l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~  281 (284)
                      ..-..+-.+.+++.+   -.++++.+..+-...|+.++.+
T Consensus       137 ~lr~~s~~l~~li~r---~p~L~~~~~~iL~~ig~kLil~  173 (215)
T TIGR03716       137 IMRFAATIFVKLLER---FPELETAAFLLIGWIGVKLLLE  173 (215)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            888777777777665   4677788888778888887763

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PRK10621 hypothetical protein; Provisional

Probab=95.14  E-value=1.3  Score=40.86  Aligned_cols=164  Identities=12%  Similarity=0.064  Sum_probs=88.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhh---ccCC
Q 023302          108 TVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLE---SGQG  184 (284)
Q Consensus       108 ~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~---~~~~  184 (284)
                      .+=.-...-+.+.+.+.+.+|.++..++|+++++.+-+++.+..++++++.   .+.+  ++++.++......   .+- 
T Consensus        74 ~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~---~~~~--~~~~~~~~~~~~~~~~~G~-  147 (266)
T PRK10621         74 VVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM---PKLG--EEDRQRRLYGLPFALIAGG-  147 (266)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC---Cccc--cccccccccchHHHHHHHH-
Confidence            344455566777889999999999999999999999988888888888752   1111  0000000000000   000 


Q ss_pred             Cccccccccccch--hhHHHHHHHHHHhhhcChHHHHHHH-------H---hcccCCcEeeehHHHHHHHHHHHHHHHHH
Q 023302          185 KTTFRRFFSRFCT--PIFLESFILTFLAEWGDRSQIATIA-------L---ATHKNAVGVAVGATIGHTICTSLAVVGGS  252 (284)
Q Consensus       185 ~~~~~~~~~~~~~--~~fl~aF~liFLAE~GDKTQLati~-------L---Aa~~~~~~V~~Ga~la~~l~t~laV~~G~  252 (284)
                         .--.++-+..  ..++....+..+..+.-|....|..       +   ......-.+-.-..+.+...+.++..+|.
T Consensus       148 ---~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~~l~l~~g~~~G~~lG~  224 (266)
T PRK10621        148 ---CVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARLGA  224 (266)
T ss_pred             ---HHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHHHHHHHHHH
Confidence               0000000000  1111111222222332222222110       0   00000001111223445667788999999


Q ss_pred             HhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302          253 MLASKISQRTVATIGGLLFLCFSLSSYF  280 (284)
Q Consensus       253 ~l~~~ip~~~i~~~agilFl~fGl~~L~  280 (284)
                      .+.+++|++.++++...+-+..|+.+++
T Consensus       225 ~l~~~~~~~~lr~~~~~ll~~~~i~~~~  252 (266)
T PRK10621        225 RLVLSKGQKLIRPMIVIVSAVMSAKLLY  252 (266)
T ss_pred             HHHHHcCchHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888887754

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=95.12  E-value=0.4  Score=43.00  Aligned_cols=68  Identities=10%  Similarity=0.129  Sum_probs=39.5

Q ss_pred             cccHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHH-hhhhccccch-hHHHHHHHHHHHHHHHHHHH
Q 023302           89 IGDETFIIAALMAMRHPKS---TVLSGALSALFVMTVLSTGL-GRIVPNLISR-KHTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus        89 lGDKTql~a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~-G~~l~~~ip~-~~~~~iagvlFl~FG~~~L~  157 (284)
                      -|.-+ +.++.-+++++++   .+-+|..++..+...+++.. +..+...-.. ..++++++.-.+.+|..+++
T Consensus        20 PGP~~-~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~r   92 (208)
T COG1280          20 PGPDN-LLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALR   92 (208)
T ss_pred             CCccH-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55443 4445556666543   37788888888877777664 3444332222 33566666655566666654

>TIGR00145 FTR1 family protein

Probab=95.08  E-value=1.3  Score=42.19  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=85.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhccccc---hh----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 023302          106 KSTVLSGALSALFVMTVLSTGLGRIVPNLIS---RK----HTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEK  178 (284)
Q Consensus       106 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip---~~----~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~  178 (284)
                      +++|+.|+.+|++++-++++.+-......-.   ++    .+.+++.++....++||...+-+.         .+|.|++
T Consensus        38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~~~~~~~---------~~~i~~~  108 (283)
T TIGR00145        38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRMQRKW---------RVKIERQ  108 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence            5679999999999998888877665443322   33    356677888888899998533221         1233333


Q ss_pred             hhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcC
Q 023302          179 LESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKI  258 (284)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~i  258 (284)
                      .++...+.  .     ..+..+..+|+.++  ==|=-|=+--.+.+...+...+..|+.+|.++...++.++= ..+.++
T Consensus       109 ~~~al~~~--~-----~~~al~~l~flaV~--REG~EtVlF~~g~~~~~~~~~~~gg~~~Gl~~~~~~g~li~-~~~~~i  178 (283)
T TIGR00145       109 LVQALKRK--R-----SGWAIALIAFIAVV--REGLETVLFLAGFQQGSHATAYIGPAVAGLIVAVVVGVLLY-RGGSRL  178 (283)
T ss_pred             HHHHHhcC--c-----chhHHHHHHHHHHH--HhhhHHHHhHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH-HHHhhC
Confidence            32110100  0     01235555555443  00111111111211112222233357777766655555544 446899


Q ss_pred             CHHHHHHHHHHHHHHHHHHHh
Q 023302          259 SQRTVATIGGLLFLCFSLSSY  279 (284)
Q Consensus       259 p~~~i~~~agilFl~fGl~~L  279 (284)
                      |.+..-.+.+++-++++...+
T Consensus       179 ~l~~FF~~t~~lL~llAagl~  199 (283)
T TIGR00145       179 SLKIFFILSSSLLLFIAAGLL  199 (283)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888777766544

A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.

>PRK09304 arginine exporter protein; Provisional

Probab=94.77  E-value=1.7  Score=38.59  Aligned_cols=74  Identities=7%  Similarity=0.046  Sum_probs=40.0

Q ss_pred             HHHHhhcccHHHHHHHHHhccCCCc-chhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHH
Q 023302           83 MIIVSEIGDETFIIAALMAMRHPKS-TVLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus        83 lIflAElGDKTql~a~~LAar~~~~-~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~  157 (284)
                      +.+.+-.|.-- +.++.-+.++++. ....|...+..+...+++..-..+-...|.  ..+++++++-.+.+|..+++
T Consensus        13 ~~~~~tPGP~~-~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r   89 (207)
T PRK09304         13 AAMILPLGPQN-AFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK   89 (207)
T ss_pred             HHHHhccChHH-HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455432 3333445555432 367788888888877766655554433343  23445555544557766664

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=94.66  E-value=1.8  Score=38.35  Aligned_cols=152  Identities=16%  Similarity=0.167  Sum_probs=90.1

Q ss_pred             ccHHHHHHHHHhccCC----CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023302           90 GDETFIIAALMAMRHP----KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPK  165 (284)
Q Consensus        90 GDKTql~a~~LAar~~----~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~  165 (284)
                      +|+-.++++ .+.+.|    ++....|...|+++...........+.    -.+.++++|++-+..|..+++     +++
T Consensus        14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~----~~~~~iaGGllLl~ia~~ml~-----~~~   83 (176)
T TIGR03717        14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA----IPFLKLIGGLLLLWIGWKLLL-----EEE   83 (176)
T ss_pred             HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHh-----ccc
Confidence            688777777 344444    245788999999888777666555444    366677777777777777764     111


Q ss_pred             CCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHH-----HHHHHHhcccCCcEeeehHHHHH
Q 023302          166 SGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQ-----IATIALATHKNAVGVAVGATIGH  240 (284)
Q Consensus       166 ~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQ-----Lati~LAa~~~~~~V~~Ga~la~  240 (284)
                      +     ++|.+++     .+            ..|+.+...+   |+=|=..     ++..+. ++.+.+.++.|..++.
T Consensus        84 ~-----~~~~~~~-----~~------------~~~~~~v~~I---~~~D~~fS~DsV~a~~~~-~~~~~~li~~g~~i~i  137 (176)
T TIGR03717        84 E-----EQGGDVK-----GS------------TTLWAAIKTI---VIADAVMSLDNVLAVAGA-AHGHLGLLIFGLLLSI  137 (176)
T ss_pred             c-----ccccccc-----cc------------CcHHHHHHHH---HHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHH
Confidence            0     0111100     00            1234443333   3333222     222222 3457788888888887


Q ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302          241 TICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYF  280 (284)
Q Consensus       241 ~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~  280 (284)
                      .+.-..+-.+.+++.+   -.++++.++.+-...|+.+++
T Consensus       138 ~~m~~~s~~~~~~~~~---~p~l~~~~~~~L~~ig~kl~~  174 (176)
T TIGR03717       138 PIIVWGSTLILKLMDR---FPWIIYIGAALLGYVAGEMIV  174 (176)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence            7776666666666665   467778887777778887765

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=94.60  E-value=1.9  Score=41.09  Aligned_cols=70  Identities=13%  Similarity=0.035  Sum_probs=46.8

Q ss_pred             HHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcC--CHHHHH---HHHHHHHHHHHHHHh
Q 023302          205 ILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKI--SQRTVA---TIGGLLFLCFSLSSY  279 (284)
Q Consensus       205 ~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~i--p~~~i~---~~agilFl~fGl~~L  279 (284)
                      ++.|..-+|+=+.=+...++.       -+|..+.+.+...+.+...+...++.  ..++++   ++++++=+++|+++.
T Consensus       198 VLL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~  270 (279)
T PRK10019        198 VLLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMG  270 (279)
T ss_pred             HHHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555544444443       35777777777777766666666666  456666   999999999999877


Q ss_pred             cc
Q 023302          280 FY  281 (284)
Q Consensus       280 ~~  281 (284)
                      |-
T Consensus       271 ~~  272 (279)
T PRK10019        271 VH  272 (279)
T ss_pred             HH
Confidence            63

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=94.50  E-value=2.7  Score=37.05  Aligned_cols=75  Identities=15%  Similarity=0.081  Sum_probs=45.4

Q ss_pred             HHHHHhhcccHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHHhhhhccccchh--HHHHHHHHHHHHHHHHHH
Q 023302           82 SMIIVSEIGDETFIIAALMAMRHPKS---TVLSGALSALFVMTVLSTGLGRIVPNLISRK--HTNSAATVLYAFFGLRLL  156 (284)
Q Consensus        82 ~lIflAElGDKTql~a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~--~~~~iagvlFl~FG~~~L  156 (284)
                      ..+...--|.- .+..+.-+++++++   ...+|...|..+...++...-..+-...|.-  .++++++.-.+.+|.+++
T Consensus        13 ~~~~~~sPGP~-~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~   91 (205)
T PRK10520         13 SIILSLSPGSG-AINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQW   91 (205)
T ss_pred             HHHHhcCCchh-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445543 45555566666543   2677999999998887766655554444433  346666655566777766


Q ss_pred             H
Q 023302          157 Y  157 (284)
Q Consensus       157 ~  157 (284)
                      +
T Consensus        92 ~   92 (205)
T PRK10520         92 R   92 (205)
T ss_pred             h
Confidence            4

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=94.34  E-value=1.6  Score=41.11  Aligned_cols=184  Identities=21%  Similarity=0.196  Sum_probs=103.6

Q ss_pred             HHHHHHHHhhc---ccHHHHHHHHHhccCC----CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 023302           79 ASFSMIIVSEI---GDETFIIAALMAMRHP----KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF  151 (284)
Q Consensus        79 ~sF~lIflAEl---GDKTql~a~~LAar~~----~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~F  151 (284)
                      .++..+.+-|.   +|+-.+++++ +.+.|    ++..+.|...|++.=.++ ...|.++-+.-+         .+|.+|
T Consensus        18 ~~l~tl~~lE~vL~iDN~iviai~-~~~Lp~~qr~ral~~Gl~~A~v~R~~l-l~~~s~Ll~l~~---------~l~~~f   86 (254)
T COG0861          18 VALLTLILLEIVLGIDNAIVIAIL-ASKLPPKQRKKALFIGLAGALVLRIIL-LASISWLLTLTQ---------PLLYIF   86 (254)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH---------HHHHHH
Confidence            45556666664   8988777654 44444    345788988888765554 444555544322         244456


Q ss_pred             HHHHHHHHHhcCCC--CCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhh--hcChHHHHHHHHhccc
Q 023302          152 GLRLLYIAWMSDPK--SGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAE--WGDRSQIATIALATHK  227 (284)
Q Consensus       152 G~~~L~~a~~~~~~--~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE--~GDKTQLati~LAa~~  227 (284)
                      |...+|.++++--+  .+..++..|.-++++.+....+..+  . . ...|+.+...+-++-  +.=-|=+++.+++  .
T Consensus        87 g~~L~~~~~~ll~~~~~~~~k~~~~~~~~~~~~~~~~~~~~--~-~-~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~--~  160 (254)
T COG0861          87 GLYLLWRDIKLLLGGLFLLFKATKELHERLEGEEFFVNGKL--K-K-ATPFWGAIIQIELADLVFSLDSVIAAVGMA--G  160 (254)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHhhhhccccccccccc--c-c-cCcHHHHHHHHHHHHHHHhhhHHHHHHHHh--c
Confidence            66666666555211  1111111111112221110000000  0 1 134566665555443  2223556666666  6


Q ss_pred             CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302          228 NAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP  282 (284)
Q Consensus       228 ~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~  282 (284)
                      +|+.++.|...|....-..+-.+.+++-+   -.++.+.+..+-+..|+.++.+.
T Consensus       161 ~~~im~~a~i~aI~~m~~aa~~l~~ll~r---~p~l~~~~~~iL~~IG~kli~~~  212 (254)
T COG0861         161 HPFVMVTAVIFAILVMRFAAFLLARLLER---HPTLKYLALVILLFIGVKLILEG  212 (254)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHH---chHHHHHHHHHHHHHHHHHHHhh
Confidence            78899999999988887777777777765   35677777777778888877665

>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised

Probab=93.27  E-value=3  Score=36.82  Aligned_cols=158  Identities=17%  Similarity=0.118  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccc-ccc
Q 023302          113 ALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTF-RRF  191 (284)
Q Consensus       113 a~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~-~~~  191 (284)
                      ...-+.....+.+.+|.++..++|+++++.+.++.-+.++.+++++-.+.+++    ++.+..+.....-.+  .. --.
T Consensus        65 ~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g--~~~~G~  138 (240)
T PF01925_consen   65 IVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKKRRKTPK----SRSSPPKRWLLFLLG--GLFIGF  138 (240)
T ss_pred             hhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccccc----ccccccchhhhhhhh--HHHhhH
Confidence            34455677788889999999999999999999999999999988621110011    000000000000000  00 000


Q ss_pred             cccc---chhhHHHHHHHHHHhhhcChHHHHHHHHhc-------------ccCCcEeeehHHHHHHHHHHHHHHHHHHhh
Q 023302          192 FSRF---CTPIFLESFILTFLAEWGDRSQIATIALAT-------------HKNAVGVAVGATIGHTICTSLAVVGGSMLA  255 (284)
Q Consensus       192 ~~~~---~~~~fl~aF~liFLAE~GDKTQLati~LAa-------------~~~~~~V~~Ga~la~~l~t~laV~~G~~l~  255 (284)
                      .+-.   ..+++... .+..+.-...|.+.+|.....             ......-.+...+.+.....++..+|+++.
T Consensus       139 ~~G~~g~ggg~~~~~-~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~  217 (240)
T PF01925_consen  139 LSGLFGIGGGPLLVP-LLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPMLLLSLILLPGAFLGAFLGAKLA  217 (240)
T ss_pred             HHhhhhccccccccc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000   00000000 011111222333333322110             111112233444457788889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHH
Q 023302          256 SKISQRTVATIGGLLFLCFSLS  277 (284)
Q Consensus       256 ~~ip~~~i~~~agilFl~fGl~  277 (284)
                      +++|+++++++..++.++.|+.
T Consensus       218 ~~i~~~~~~~~~~~ll~~~~~~  239 (240)
T PF01925_consen  218 RKIPQKVFRRIFLILLLLSGLK  239 (240)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888875

; GO: 0016021 integral to membrane

>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake

Probab=93.11  E-value=2.8  Score=39.92  Aligned_cols=165  Identities=21%  Similarity=0.227  Sum_probs=91.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhcccc------chh----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH-
Q 023302          106 KSTVLSGALSALFVMTVLSTGLGRIVPNLI------SRK----HTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEE-  174 (284)
Q Consensus       106 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~i------p~~----~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eE-  174 (284)
                      +++|+.|+..|++.+..++..+-.....+-      .++    .+..++.++-....+||...+-+..      +|.|+ 
T Consensus        35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~~~------~~~~~~  108 (306)
T PF03239_consen   35 RRWVWLGVAAGLVASLVIGAVFAVIFYTLSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRKMK------GEWEDK  108 (306)
T ss_pred             hheeeecHhHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------hhHHHH
Confidence            478999999999999988887766544322      222    3344555566666777765321111      11111 


Q ss_pred             HHHhhhcc--CCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhccc--CCcEeeehHHHHHHHHHHHHHHH
Q 023302          175 VEEKLESG--QGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHK--NAVGVAVGATIGHTICTSLAVVG  250 (284)
Q Consensus       175 ve~~l~~~--~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~--~~~~V~~Ga~la~~l~t~laV~~  250 (284)
                      .+...+.+  +.+.....-..+..+..|..+|+.+ +=| |=-|=+.-.++.+..  +...+..|+..|.++...++.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~  186 (306)
T PF03239_consen  109 LAKALSSGSEDARASQKDEGGGSKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLL  186 (306)
T ss_pred             HHHHHhhccchhhhhhhccccchhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111  0000000000001135566666333 222 445555556665543  36778888888888888888877


Q ss_pred             HHHhhhcCCHHHHHHHHHHHHHHHHHHHh
Q 023302          251 GSMLASKISQRTVATIGGLLFLCFSLSSY  279 (284)
Q Consensus       251 G~~l~~~ip~~~i~~~agilFl~fGl~~L  279 (284)
                      -+. ..++|.+..-.+.+++-++.+..++
T Consensus       187 ~~~-~~~i~~~~~f~~~~~~ll~~aa~L~  214 (306)
T PF03239_consen  187 YRG-LIRISLRSFFIITGVLLLLIAAGLL  214 (306)
T ss_pred             HHH-HHhcChHHHHHHHHHHHHHHHHHHH
Confidence            665 4578988888888776555554443

Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane

>PRK10995 inner membrane protein; Provisional

Probab=92.62  E-value=3  Score=37.91  Aligned_cols=48  Identities=25%  Similarity=0.402  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHH
Q 023302          109 VLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus       109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~  157 (284)
                      ..-.+..+.+++. +..+.|+.+-++  ++....++.+|++.+.+|+.|++
T Consensus        44 a~~~~~~a~~ill-~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~   93 (221)
T PRK10995         44 ALMASVYVFAIMM-VAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLF   93 (221)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444444443 666777776664  46778899999999999999985

>PRK10958 leucine export protein LeuE; Provisional

Probab=92.57  E-value=7.4  Score=34.80  Aligned_cols=73  Identities=14%  Similarity=0.124  Sum_probs=42.3

Q ss_pred             HHhhcccHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHH
Q 023302           85 IVSEIGDETFIIAALMAMRHPKS---TVLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLYI  158 (284)
Q Consensus        85 flAElGDKTql~a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~~  158 (284)
                      ...--|...- ..+.-+.+++++   ...+|..++..+...+++..-..+.+..|.  ..+++++++-.+.+|.+++++
T Consensus        20 ~~~sPGP~~~-~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~   97 (212)
T PRK10958         20 IVLLPGPNSL-YVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRA   97 (212)
T ss_pred             HhcCCchHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555443 344455555543   267788888888877777544444333332  334666666556688877754

>COG4280 Predicted membrane protein [Function unknown]

Probab=90.51  E-value=0.63  Score=43.00  Aligned_cols=62  Identities=23%  Similarity=0.303  Sum_probs=53.8

Q ss_pred             hHHHHHHHHhcc--cCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHH
Q 023302          215 RSQIATIALATH--KNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLS  277 (284)
Q Consensus       215 KTQLati~LAa~--~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~  277 (284)
                      -+...+++.+-.  +++..-++|+.+|+++.-.++..+|+.+. .+|.+++++++|++.+.||-.
T Consensus        17 lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L~-lvPln~lqiv~gvLLllFG~r   80 (236)
T COG4280          17 LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLY-LVPLNYLQIVSGVLLLLFGYR   80 (236)
T ss_pred             HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHcccee-eeechHHHHHHHHHHHHHHHH
Confidence            456667777753  57788899999999999999999999876 799999999999999999964

>TIGR00427 membrane protein, MarC family

Probab=90.36  E-value=7.7  Score=35.01  Aligned_cols=152  Identities=15%  Similarity=0.136  Sum_probs=78.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-chhHHHHHhhhccCC
Q 023302          108 TVLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQK-KEMEEVEEKLESGQG  184 (284)
Q Consensus       108 ~Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~-~e~eEve~~l~~~~~  184 (284)
                      ...-.+..+++++- +..+.|+++-++  ++..-.++.+|++.+..|+.|+.    .++++.++ +|.+|.+++     .
T Consensus        42 ia~~~~l~a~~ill-~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~----~~~~~~~~~~~~~~~~~~-----~  111 (201)
T TIGR00427        42 IAKKANISSFIILL-IFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLS----GEGEDKQHKDEKEESAEI-----D  111 (201)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC----CCCccccccccccccccc-----c
Confidence            34555555555554 566677776664  57788999999999999999984    21111111 111110100     0


Q ss_pred             Ccccccc-ccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCC---H
Q 023302          185 KTTFRRF-FSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS---Q  260 (284)
Q Consensus       185 ~~~~~~~-~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip---~  260 (284)
                      +....+. .+-.+.|--+ +.++++-+|-.+.++.            ...+.+.....+.+.+.-..++++.+++.   .
T Consensus       112 ~iaivPLa~PllaGPGaI-ttvi~l~~~~~~~~~~------------~~~~~ai~~~~~~~~~~l~~s~~l~~~LG~~g~  178 (201)
T TIGR00427       112 SIAVVPLALPLIAGPGAI-TTTMVLGARASSIGYK------------FLVVLAIALVALITWLLFRYSAFIIRRLGRTGI  178 (201)
T ss_pred             CeeeeecccccccCcHHH-HHHHHHHhccccHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            0011110 0011223222 2233333332211111            11222333344445555566777777774   5


Q ss_pred             HHHHHHHHHHHHHHHHHHhccC
Q 023302          261 RTVATIGGLLFLCFSLSSYFYP  282 (284)
Q Consensus       261 ~~i~~~agilFl~fGl~~L~~~  282 (284)
                      +.+.++.|++-.++|+.++.++
T Consensus       179 ~il~Ri~GliL~aIaVq~i~~G  200 (201)
T TIGR00427       179 NVITRIMGLLLAAIAVEFIVTG  200 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc
Confidence            6778999999999999887654

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=90.31  E-value=0.58  Score=42.30  Aligned_cols=53  Identities=8%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             cEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302          230 VGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP  282 (284)
Q Consensus       230 ~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~  282 (284)
                      +...+-..+-+.+++.++..+|+.+.+++|+++-+++++++++.+|++++++.
T Consensus        30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~   82 (206)
T TIGR02840        30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNA   82 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333334445688899999999999999999999999999999999998753

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PRK11111 hypothetical protein; Provisional

Probab=90.19  E-value=5.5  Score=36.42  Aligned_cols=50  Identities=26%  Similarity=0.329  Sum_probs=37.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHH
Q 023302          107 STVLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus       107 ~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~  157 (284)
                      +..+-.+..+.+++. +..++|+++-++  |+..-.++.+|++.+.+|+.|++
T Consensus        44 ~ia~~a~l~a~~ill-~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~   95 (214)
T PRK11111         44 KTNLTANLSVAIILL-ISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMIS   95 (214)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            345555555555555 668889888775  47788999999999999999984

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=88.38  E-value=17  Score=31.98  Aligned_cols=46  Identities=15%  Similarity=0.065  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 023302          109 VLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLR  154 (284)
Q Consensus       109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~  154 (284)
                      -.+|=+.+..+.-.++..+|+.+......++++.+.+++...++++
T Consensus        38 y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~~~~~~l~   83 (199)
T PF13386_consen   38 YNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGILLGLLGLF   83 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            3567777778888888888888876655455666655555555554

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=87.84  E-value=15  Score=38.12  Aligned_cols=47  Identities=9%  Similarity=0.229  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 023302          110 LSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLL  156 (284)
Q Consensus       110 f~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L  156 (284)
                      .+|..+.+.+..+++..+|..+...+-..|+..+.+++|+++|+.++
T Consensus       216 ~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~  262 (571)
T PRK00293        216 VQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF  262 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            56888888888888888888776555556788888999999999886

>PRK10739 putative antibiotic transporter; Provisional

Probab=87.16  E-value=13  Score=33.58  Aligned_cols=145  Identities=12%  Similarity=0.230  Sum_probs=75.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCC
Q 023302          108 TVLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGK  185 (284)
Q Consensus       108 ~Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~  185 (284)
                      ...-.+..+.+++- +..++|+.+-++  ++..-.++.+|++.+.+|+.|++    .++++ +++|.+|.+|        
T Consensus        39 ia~~a~~~a~~ill-~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~----~~~~~-~~~~~~~~~~--------  104 (197)
T PRK10739         39 IMIRELLIALLVML-VFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIF----PSAEG-NSSGLPAGEE--------  104 (197)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc----CCCcc-cccccccccC--------
Confidence            34445555554444 667778877665  57888999999999999999984    22111 1111111110        


Q ss_pred             cccccc-ccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCC---HH
Q 023302          186 TTFRRF-FSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS---QR  261 (284)
Q Consensus       186 ~~~~~~-~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip---~~  261 (284)
                      ....+. .+-.+.|--+++ ++..-.|.+++              ......+.+...+.+.+.-..++++.+++.   .+
T Consensus       105 ~avvPLa~PllaGPGaItt-vi~l~~~~~~~--------------~~~~~~ai~~~~~~~~l~l~~s~~i~~~LG~~g~~  169 (197)
T PRK10739        105 PFLVPLAIPLVAGPSILAT-LMLLSHQYPNQ--------------MGHLVIALLIAWGGTFVILLQSSLFLRLLGEKGVN  169 (197)
T ss_pred             ceeeecccccccCcHHHHH-HHHHHhhccch--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            011110 011223333332 22333332221              111112222333344444455666666664   56


Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q 023302          262 TVATIGGLLFLCFSLSSYFY  281 (284)
Q Consensus       262 ~i~~~agilFl~fGl~~L~~  281 (284)
                      .+.++.|++-.++|+..+..
T Consensus       170 vi~RimGllLaaiavq~i~~  189 (197)
T PRK10739        170 ALERLMGLILVMLSTQMFLD  189 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999877654

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=86.72  E-value=21  Score=31.35  Aligned_cols=67  Identities=15%  Similarity=0.188  Sum_probs=39.8

Q ss_pred             cHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHHhhhhccccchh--HHHHHHHHHHHHHHHHHHH
Q 023302           91 DETFIIAALMAMRHPKS---TVLSGALSALFVMTVLSTGLGRIVPNLISRK--HTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus        91 DKTql~a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~--~~~~iagvlFl~FG~~~L~  157 (284)
                      .=+.+..+.-+.+++++   ....|...|..+...++......+.+..|.-  .+++++++-.+..|.++++
T Consensus        21 GP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~   92 (195)
T PRK10323         21 GPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIAT   92 (195)
T ss_pred             ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455566666676543   3788999999998777765554444333332  3455554433457766653

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=86.61  E-value=2.1  Score=38.96  Aligned_cols=54  Identities=19%  Similarity=0.261  Sum_probs=44.2

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302          103 RHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus       103 r~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~  157 (284)
                      +++++.+.+|-.++....-..|+..+..+ .++|++|+--.-|++=+..|+|-++
T Consensus        21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~   74 (193)
T TIGR00779        21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAI   74 (193)
T ss_pred             CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHh
Confidence            56677899999999988888888755544 6999999977777878899999886

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=85.55  E-value=31  Score=34.49  Aligned_cols=54  Identities=26%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 023302           94 FIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVL  147 (284)
Q Consensus        94 ql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvl  147 (284)
                      .-+++-++-.+++..-..-...++.+-+++++=+|.++.+++.-++.-.+.+++
T Consensus       123 ~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l  176 (394)
T COG2814         123 AALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL  176 (394)
T ss_pred             HHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHH
Confidence            334444444445555566666777777888888888888888888866555544

>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed

Probab=81.46  E-value=39  Score=30.12  Aligned_cols=49  Identities=12%  Similarity=0.045  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhccc------cchhHHHHHHHHHHHHHHHHHHH
Q 023302          109 VLSGALSALFVMTVLSTGLGRIVPNL------ISRKHTNSAATVLYAFFGLRLLY  157 (284)
Q Consensus       109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~------ip~~~~~~iagvlFl~FG~~~L~  157 (284)
                      .++|...+............+.+.+.      ....+++++.|++++.+|++...
T Consensus        34 f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~   88 (214)
T PF11139_consen   34 FLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWR   88 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence            56677777777777777777766633      34567788999999999988865

Currently no function for this family is known.

>TIGR00948 2a75 L-lysine exporter

Probab=80.63  E-value=36  Score=29.18  Aligned_cols=62  Identities=5%  Similarity=-0.043  Sum_probs=38.9

Q ss_pred             HHHHhccCCCc-chhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHH
Q 023302           97 AALMAMRHPKS-TVLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLYI  158 (284)
Q Consensus        97 a~~LAar~~~~-~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~~  158 (284)
                      .+..++++++- ...+|...+..+...++++.-..+-+..|.  .++++++++-.+.+|..+++.
T Consensus        12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~   76 (177)
T TIGR00948        12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT   76 (177)
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445442 367899999999888877766655544443  235666665556688777653

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=80.24  E-value=9.4  Score=32.77  Aligned_cols=20  Identities=30%  Similarity=0.379  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 023302          139 HTNSAATVLYAFFGLRLLYI  158 (284)
Q Consensus       139 ~~~~iagvlFl~FG~~~L~~  158 (284)
                      +++.+++++++.+|++++++
T Consensus       171 ~i~~~~g~~li~~av~l~~~  190 (191)
T PF01810_consen  171 WINRISGLLLIGFAVYLLYS  190 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            88999999999999999974

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 41/226 (18%), Positives = 60/226 (26%), Gaps = 74/226 (32%)

Query: 3   LVSNPVRFLFVALSIFSALSAISAQDVL----FESDNEDPSRSAKDLGRRGLI------- 51
           L     R +F  LS+F   + I    +L    F+    D       L +  L+       
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 52  ----------LSQDLENEL-------------------GTIPLNIDSGLGVFDAFIA--- 79
                     L   LENE                      IP  +D     F + I    
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYSHIGHHL 481

Query: 80  ----------SFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGR 129
                      F M+ +    D  F+   +   RH  ST  + + S L  +  L      
Sbjct: 482 KNIEHPERMTLFRMVFL----DFRFLEQKI---RH-DSTAWNASGSILNTLQQLKFYKPY 533

Query: 130 IVPN------LIS--RKHTNSAATVLYAFFGLRLLYIAWMSDPKSG 167
           I  N      L++            L       LL IA +      
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA-LMAEDEA 578

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	84.1

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=84.10  E-value=22  Score=31.42  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 023302          241 TICTSLAVVGGSMLASKISQRTVATIGGLLF  271 (284)
Q Consensus       241 ~l~t~laV~~G~~l~~~ip~~~i~~~agilF  271 (284)
                      .++..++.+++.++.+|+..+.+-.++.++.
T Consensus       305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~  335 (438)
T 3o7q_A          305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3455567777778888898887766555444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00