Citrus Sinensis ID: 023367

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSWSNVSLCLEQTYHRFGS
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccccEEEEcccccccccEEccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEccccccccccEEEEcccccccccEEccccccEEEcccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEHEHHHccccEEccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccc
Coil and Loop (DISEMBL)
maghfpsfykglqvsrckvwniidRTTVVKLERYHLKHhirgakdrsiyHQKIKIKHlanaasghplqsnqpddykpksplnSVINALDAFyrfsrphtvigTALSIVSVALLAVEkvsdisplfFTGVLEAIAAALMMNIYIVGlnqlsdieidklplLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQthvyrrpavfskpLIFATAFMSFFSVVIALFkdvpdlegdktfgiRTFTVRLGQKRVSVLDLYFstgsslyccnfswsnvslcleqtyhrfgs
Flexible Loop (DISEMBL)
maghfpsfykglqvsrckvwnIIDRTTvvkleryhlkhhirgakdrsiyHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIrtftvrlgqkrvSVLDLYFSTGSSLYCCNFSWSNVSLCLEQTYHRFGS
Low Complexity Region (SEG)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSWSNVSLCLEQTYHRFGS
Disordered region (IsUnstruct)
****FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLA***********************SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSWSNVSLCLEQTYH****
Disordered Region (DISOPRED)
************************************************************************************INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSWSNVSLCLEQTYHRF**
Disordered Region (DISEMBL)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSWSNVSLCLEQTYHRFGS
Disordered Region (DISPRO)
****FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAAS***************SPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSWSNVSLCLEQTYHR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSWSNVSLCLEQTYHRFGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.787	0.567	0.506	1e-69
B7FA90	404	Probable homogentisate ph	yes	no	0.749	0.524	0.523	2e-65
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.837	0.579	0.322	8e-30
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.759	0.524	0.320	2e-28
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.720	0.528	0.251	2e-13
Q0D576	379	Probable homogentisate ph	no	no	0.409	0.306	0.320	1e-09

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 150/296 (50%), Positives = 183/296 (61%), Gaps = 73/296 (24%)

Query: 12  LQVSRCKVWNIIDRTTVVKLERYHLKHHIR--GAKDRSIYHQKIKIKHLANAASGHPLQS 69
           ++V RC      D + VV   ++   + +R  G     + + K K +   NA +G     
Sbjct: 32  IRVLRC------DSSKVVAKPKFR-NNLVRPDGQGSSLLLYPKHKSRFRVNATAG----- 79

Query: 70  NQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGV 129
            QP+ +   S   S  ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FTG+
Sbjct: 80  -QPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGI 138

Query: 130 LEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------------- 159
           LEA+ AALMMNIYIVGLNQLSD+EIDK     LPL                         
Sbjct: 139 LEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLG 198

Query: 160 ----------------------------LRWKRFAVAAAMCILAVRAVVVQLAFYLHMQT 191
                                       LRWKRFA+ AAMCILAVRA++VQ+AFYLH+QT
Sbjct: 199 WIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQT 258

Query: 192 HVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247
           HV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQKRV
Sbjct: 259 HVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  249 bits (635), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/277 (52%), Positives = 172/277 (62%), Gaps = 65/277 (23%)

Query: 62  ASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDI 121
           ASG PLQS+  + +   S    + ++LDAFYRFSRPHTVIGTALSIVSV+LLAVE +SD+
Sbjct: 83  ASGQPLQSSA-EAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDV 141

Query: 122 SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL----------------- 159
           SPLF TG+LEA+ AAL MNIYIVGLNQL DIEIDK     LPL                 
Sbjct: 142 SPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAF 201

Query: 160 ------LRW------------------------------KRFAVAAAMCILAVRAVVVQL 183
                 L W                              KR AV AA+CILAVRAV+VQL
Sbjct: 202 AAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQL 261

Query: 184 AFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLG 243
           AF+LH+QT V+RRPAVF++PLIFATAFM+FFSVVIALFKD+PD+EGD+ FGI++F+VRLG
Sbjct: 262 AFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLG 321

Query: 244 QKRVSVLDLYFSTG--SSLYCCNFSWSNVSLCLEQTY 278
           QK+V     +   G     YC        S CL   Y
Sbjct: 322 QKKV----FWICVGLLEMAYCVAILMGATSACLWSKY 354

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  130 bits (328), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 153/313 (48%), Gaps = 76/313 (24%)

Query: 27  TVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVIN 86
            V++ ++  L HH +  +  S Y Q+   K +  A S  PL   +     PK+ L+SV N
Sbjct: 54  NVLRFQQPSLDHHYKCIRGGSTY-QECNRKFVVKAISKQPL-GFEAHASNPKNILDSVKN 111

Query: 87  ALDAFYRFSRPHTVIGTALSIVSVALLA-------------------------------V 115
            L AFY FS P+T+IG  L   S +LLA                               V
Sbjct: 112 VLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGV 171

Query: 116 EKVSDIS---------PL------FFTGVLEAIAAA----------------LMMNIYIV 144
            ++ D+          P+      F TGV+  I+AA                L+ N+ ++
Sbjct: 172 NQLYDLEIDKINKPHLPMASGQFSFKTGVI--ISAAFLALSFGFTWITGSWPLICNLVVI 229

Query: 145 GLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPL 204
             +  +   ID +PLLRWKR+   AAMC+++  A+ + ++++ HMQT V +RP  F + L
Sbjct: 230 A-SSWTAYSID-VPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSL 287

Query: 205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKR-----VSVLDLYFSTG-- 257
            F  AFM+F+S+ +AL KD+PD+EGDK  GI +F VRLGQKR     VS  ++ F  G  
Sbjct: 288 GFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGIL 347

Query: 258 SSLYCCNFSWSNV 270
           +   C +F W+ +
Sbjct: 348 AGASCSHF-WTKI 359

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 139/278 (50%), Gaps = 63/278 (22%)

Query: 31  LERYHLKHH--IRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINAL 88
             +++LK H  +      S   ++ + K++ NA S    +  +P    P+S  +SV +AL
Sbjct: 56  FSKHNLKQHYKVNEGGSTSNTSKECEKKYVVNAISEQSFE-YEPQTRDPESIWDSVNDAL 114

Query: 89  DAFYRFSRPHTVIGTAL-----SIVSVALLA--------------------------VEK 117
           D FY+F RP+ +    L     S+V+V  L+                          + +
Sbjct: 115 DIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQ 174

Query: 118 VSDIS--------------PLFFTGVLEAIAAALMMNI---YIVGLNQL----------- 149
           + DI                L F  V+   A++L++ +   +IV    L           
Sbjct: 175 LCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVA 234

Query: 150 SDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATA 209
           S   +D LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA
Sbjct: 235 SAYNVD-LPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTA 293

Query: 210 FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247
            +S +++VIALFKD+PD+EGD+ FGI++ ++RLG KRV
Sbjct: 294 IVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 78/282 (27%)

Query: 43  AKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIG 102
           +K  S  ++KI I+  +   +    +S+ P        L+ +    +A +RF RPHT+ G
Sbjct: 56  SKFVSTNYRKISIRACSQVGAA---ESDDPV-------LDRIARFQNACWRFLRPHTIRG 105

Query: 103 TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMM-----------NIYIVGLNQLS- 150
           TAL   S AL+    + +   + ++ VL+A++  L +            IY +G+++++ 
Sbjct: 106 TALG--STALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNK 163

Query: 151 --------DIEIDK---------------------------------------LPLLRWK 163
                   D+ +                                         +P LR K
Sbjct: 164 PYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMK 223

Query: 164 RFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKD 223
           RF VAA + I  VR  ++    Y H        P  +S P+ F T+F++ F++VIA+ KD
Sbjct: 224 RFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKD 282

Query: 224 VPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNF 265
           +PD+EGD+ F I T   +LG + ++ L      GS L   N+
Sbjct: 283 LPDVEGDRKFQISTLATKLGVRNIAFL------GSGLLLVNY 318

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 18/134 (13%)

Query: 153 EIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAV-----FSKPLIFA 207
            I  +P  R KR+ VAA + I  VR       F L+   +   R A+     +S P+ F 
Sbjct: 206 TIYSVPPFRLKRYPVAAFLIIATVRG------FLLNFGVYYATRAALGLTFQWSSPVAFI 259

Query: 208 TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSW 267
           T F++ F++VIA+ KD+PD+EGD+ + I T   +LG + ++ L      GS L   N+  
Sbjct: 260 TCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFL------GSGLLIANYVA 313

Query: 268 S-NVSLCLEQTYHR 280
           +  V+  + Q + R
Sbjct: 314 AIAVAFLMPQAFRR 327

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
185487419	407	homogentisate phytyltransferase [Manihot	0.851	0.592	0.584	9e-90
255586143	432	bacteriochlorophyll synthase, putative [	0.858	0.562	0.559	9e-86
219842166	414	homogentisate phytyl transferase [Hevea	0.862	0.589	0.560	3e-85
147858275	406	hypothetical protein VITISV_043992 [Viti	0.848	0.591	0.557	4e-84
225446000	406	PREDICTED: homogentisate phytyltransfera	0.848	0.591	0.561	6e-84
56126261	406	homogentisate geranylgeranyl transferase	0.848	0.591	0.557	3e-83
254596582	407	homogentisate phytyltransferase [Malus x	0.855	0.594	0.541	2e-82
224143686	398	predicted protein [Populus trichocarpa]	0.837	0.595	0.564	4e-82
190611658	400	homogentisic acid phytyltransferase [Ang	0.830	0.587	0.547	6e-79
186695349	400	chloroplast homogentisate phytyltransfer	0.830	0.587	0.537	4e-78

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  335 bits (860), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 177/303 (58%), Positives = 208/303 (68%), Gaps = 62/303 (20%)

Query: 3   GHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAA 62
           GH P+    ++VS C+ WN+++R    K + + +KHH+R   +RS  +QK     L +A 
Sbjct: 30  GHSPT---SVRVSGCRTWNVLERHYFAKSQHHQMKHHLRHIVERSTIYQKSDAHFLVHAT 86

Query: 63  SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDIS 122
           SG PL+S +PD Y PKS  NS++NALDAFYRFSRPHTVIGTALSI+SV+LLAVEK+SD+S
Sbjct: 87  SGQPLES-EPDAYSPKSTSNSILNALDAFYRFSRPHTVIGTALSILSVSLLAVEKLSDLS 145

Query: 123 PLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------ 159
           PLFFTGVLEA+ AAL+MNIYIVGLNQL+DIEIDK     LPL                  
Sbjct: 146 PLFFTGVLEAVVAALLMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSVGIGVMIIASFS 205

Query: 160 -----------------------------------LRWKRFAVAAAMCILAVRAVVVQLA 184
                                              LRWKRFA  AAMCILAVRAV+VQLA
Sbjct: 206 MMSFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLA 265

Query: 185 FYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
           FYLHMQTHVY RPAVFS+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+FTVRLGQ
Sbjct: 266 FYLHMQTHVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQ 325

Query: 245 KRV 247
           +RV
Sbjct: 326 ERV 328

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586143|ref|XP_002533733.1| bacteriochlorophyll synthase, putative [Ricinus communis] gi|223526358|gb|EEF28652.1| bacteriochlorophyll synthase, putative [Ricinus communis]

 Score =  322 bits (826), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 173/309 (55%), Positives = 207/309 (66%), Gaps = 66/309 (21%)

Query: 4   HFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAAS 63
           H PS     +VSRC+ W I++R  VVK + +++KHH+R + +RS  ++K     LA+AAS
Sbjct: 27  HSPSPIAAFEVSRCRAWTILERHNVVKSQHHYVKHHLRHSAERSTIYRKNDASFLAHAAS 86

Query: 64  GHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGT-------ALSIVSVALLAVE 116
             PLQS +P+ Y PK     ++++LDAFYRFSRPHTVIGT       ALSI+SV+LLA++
Sbjct: 87  EQPLQS-EPEAYIPKKTSIPILDSLDAFYRFSRPHTVIGTVKFNISHALSIISVSLLAIQ 145

Query: 117 KVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------ 159
           K+SD+SPLF TGVLEA+AAALMMNIYIVGLNQL+DIEIDK     LPL            
Sbjct: 146 KLSDLSPLFLTGVLEAVAAALMMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSVGMGVM 205

Query: 160 -----------------------------------------LRWKRFAVAAAMCILAVRA 178
                                                     RWKRFA  AAMCILAVRA
Sbjct: 206 IVTSFSIMSFWLGWIVGSWPLFWALFISFILGTAYSVNLPLFRWKRFAFVAAMCILAVRA 265

Query: 179 VVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTF 238
           V+VQLAFYLHMQ HVYRRPAVFS+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F
Sbjct: 266 VIVQLAFYLHMQIHVYRRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSF 325

Query: 239 TVRLGQKRV 247
           TVRLGQ+RV
Sbjct: 326 TVRLGQERV 334

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842166|dbj|BAH10640.1| homogentisate phytyl transferase [Hevea brasiliensis]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 203/307 (66%), Gaps = 63/307 (20%)

Query: 3   GHFPSFYKGL---QVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKH-L 58
           GH P   + +   +V+RC+ WN+++R  V K     + HH+R + +RS  +Q+ K  H L
Sbjct: 30  GHSPRVTRSIASVRVARCRTWNVLERYYVAKFPLPRMNHHLRCSVERSNIYQRKKGAHFL 89

Query: 59  ANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV 118
              ASG PL+S + D Y PK   NSV+NALDAFYRFSRPHTVIGTALSI+SV+LLAVEK+
Sbjct: 90  VYTASGQPLES-ESDAYSPKITSNSVLNALDAFYRFSRPHTVIGTALSILSVSLLAVEKL 148

Query: 119 SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-------------- 159
           SD+SPLF TGVLEA+ AALMMN+YIVGLNQL+DIEID+     LPL              
Sbjct: 149 SDLSPLFLTGVLEAVVAALMMNVYIVGLNQLTDIEIDQVNKPYLPLASGEYSKGIGVLNV 208

Query: 160 ---------------------------------------LRWKRFAVAAAMCILAVRAVV 180
                                                  LRWKRFA  AAMCIL VRAV+
Sbjct: 209 ASFSIMSFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILVVRAVI 268

Query: 181 VQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTV 240
           VQLAFYLHMQTHVYRRP VFS+PLIFATAFM  FSVVIALFKD+PD+EGDK FGIR+FTV
Sbjct: 269 VQLAFYLHMQTHVYRRPTVFSRPLIFATAFMCLFSVVIALFKDIPDIEGDKIFGIRSFTV 328

Query: 241 RLGQKRV 247
           RLGQ+RV
Sbjct: 329 RLGQERV 335

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 203/303 (66%), Gaps = 63/303 (20%)

Query: 3   GHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAA 62
           GH PS Y  +Q+SR    N   R+  V  +++  KHH+RG ++   ++++   K++ NAA
Sbjct: 30  GHSPSSYVPVQISR----NGAGRSYTVSFQQHLTKHHVRGIQEGCTFYKRWNTKYVVNAA 85

Query: 63  SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDIS 122
           SG PL+S +P    PKS    V NA+DAFYRFSRPHTVIGTALSI+SV+LLAVEK+SD S
Sbjct: 86  SGQPLES-EPGASSPKSTWTPVKNAIDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFS 144

Query: 123 PLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------ 159
           PLFFTGVLEA+ AAL+MNIYIVGLNQ+SDIEIDK     LPL                  
Sbjct: 145 PLFFTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFA 204

Query: 160 -----------------------------------LRWKRFAVAAAMCILAVRAVVVQLA 184
                                              LRWKRFA+ AAMCILAVRAV+VQ+A
Sbjct: 205 VMSFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIA 264

Query: 185 FYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
           FY+H+QT VY RPAVFS+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+VRLGQ
Sbjct: 265 FYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVRLGQ 324

Query: 245 KRV 247
           KRV
Sbjct: 325 KRV 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446000|ref|XP_002267306.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic [Vitis vinifera] gi|297735423|emb|CBI17863.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 203/303 (66%), Gaps = 63/303 (20%)

Query: 3   GHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAA 62
           GH PS Y  +Q+SR    N   R+  V  +++  KHH+RG ++   ++++   K + NAA
Sbjct: 30  GHSPSSYVPVQISR----NGAGRSYTVSFQQHLTKHHVRGIQEGCTFYKRWNTKCVVNAA 85

Query: 63  SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDIS 122
           SG PL+S +P    PKS L  V NALDAFYRFSRPHTVIGTALSI+SV+LLAVEK+SD S
Sbjct: 86  SGQPLES-EPGASSPKSTLTPVKNALDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFS 144

Query: 123 PLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------ 159
           PLFFTGVLEA+ AAL+MNIYIVGLNQ+SDIEIDK     LPL                  
Sbjct: 145 PLFFTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFA 204

Query: 160 -----------------------------------LRWKRFAVAAAMCILAVRAVVVQLA 184
                                              LRWKRFA+ AAMCILAVRAV+VQ+A
Sbjct: 205 FMSFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIA 264

Query: 185 FYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
           FY+H+QT VY RPAVFS+PLIFATAFMSFFSVVIALFKD+PD+EGD+ FGIR+F+VRLGQ
Sbjct: 265 FYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQ 324

Query: 245 KRV 247
           KRV
Sbjct: 325 KRV 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56126261|gb|AAV74623.1| homogentisate geranylgeranyl transferase [Vitis vinifera]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 202/303 (66%), Gaps = 63/303 (20%)

Query: 3   GHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAA 62
           GH PS Y  +Q+SR    N   R+  V  +++  KHH+RG ++   ++++   K + NAA
Sbjct: 30  GHSPSSYVPVQISR----NGAGRSYTVSFQQHLTKHHVRGIQEGCTFYKRWNTKCVVNAA 85

Query: 63  SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDIS 122
           SG PL+S +P    PKS L  V NAL AFYRFSRPHTVIGTALSI+SV+LLAVEK+SD S
Sbjct: 86  SGQPLES-EPGASSPKSTLTPVKNALGAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFS 144

Query: 123 PLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------ 159
           PLFFTGVLEA+ AAL+MNIYIVGLNQ+SDIEIDK     LPL                  
Sbjct: 145 PLFFTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFA 204

Query: 160 -----------------------------------LRWKRFAVAAAMCILAVRAVVVQLA 184
                                              LRWKRFA+ AAMCILAVRAV+VQ+A
Sbjct: 205 FMSFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIA 264

Query: 185 FYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
           FY+H+QT VY RPAVFS+PLIFATAFMSFFSVVIALFKD+PD+EGD+ FGIR+F+VRLGQ
Sbjct: 265 FYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQ 324

Query: 245 KRV 247
           KRV
Sbjct: 325 KRV 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254596582|gb|ACT75571.1| homogentisate phytyltransferase [Malus x domestica]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/301 (54%), Positives = 202/301 (67%), Gaps = 59/301 (19%)

Query: 5   FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASG 64
           F   Y  ++VSRC+ W+I++    V  +++  + +  G K++S +++    K L NA +G
Sbjct: 29  FSGSYVAVRVSRCRAWDILESYCGVGSQQHLFQRNTGGTKEKSKFYRGHDKKFLVNATAG 88

Query: 65  HPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL 124
           +PL+S +P+ Y PKS  NS+ NA+DAFYRFSRPHTVIGTALSI+SV+LLAV+ +SD+SPL
Sbjct: 89  NPLES-EPEAYNPKSIWNSIKNAIDAFYRFSRPHTVIGTALSIISVSLLAVKNLSDLSPL 147

Query: 125 FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-------------------- 159
           FFTGVLEA+ AA  MNIYIVGLNQLSDI+IDK     LPL                    
Sbjct: 148 FFTGVLEAVVAAFFMNIYIVGLNQLSDIDIDKVNKPYLPLASGEYSVGTGIMIVTSFLIM 207

Query: 160 ---------------------------------LRWKRFAVAAAMCILAVRAVVVQLAFY 186
                                            LRWKR AV AAMCILAVRAV+VQLAF+
Sbjct: 208 SFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVVAAMCILAVRAVIVQLAFF 267

Query: 187 LHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKR 246
           LHMQ HVY+RPA FS+PLIFATAFMSFFSVVIALFKD+PD++GDK FGIR+FTVR+GQKR
Sbjct: 268 LHMQMHVYKRPAAFSRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIRSFTVRMGQKR 327

Query: 247 V 247
           V
Sbjct: 328 V 328

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143686|ref|XP_002325040.1| predicted protein [Populus trichocarpa] gi|222866474|gb|EEF03605.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 200/303 (66%), Gaps = 66/303 (21%)

Query: 3   GHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAA 62
           GH P   + +QV RC+   I++R  VV+ +R+H    ++    +S  +Q+   K L +AA
Sbjct: 31  GHSP---REVQVYRCRARKILERQCVVRFQRHHSGFSVK----KSTIYQENNAKFLVHAA 83

Query: 63  SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDIS 122
           SG P +S +   Y P+S   SV NALDAFYRFSRPHTVIGTALSI+SV+LLA+EK+SDIS
Sbjct: 84  SGQPFES-ESGAYNPESTSKSVKNALDAFYRFSRPHTVIGTALSILSVSLLAIEKLSDIS 142

Query: 123 PLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------ 159
           PLFFTGVLEA+AAALMMNIYIVGLNQL+DIEIDK     LPL                  
Sbjct: 143 PLFFTGVLEAVAAALMMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSISTGVMIVTSFS 202

Query: 160 -----------------------------------LRWKRFAVAAAMCILAVRAVVVQLA 184
                                              LRWKRFA  AA+CILAVRAV+VQLA
Sbjct: 203 IMSFWLGWVVGSWPLFWALFISFVLGTAYSINLPLLRWKRFAFVAAVCILAVRAVIVQLA 262

Query: 185 FYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
           FYLHMQTHVY RP V S+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+FTVRLGQ
Sbjct: 263 FYLHMQTHVYGRPPVLSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQ 322

Query: 245 KRV 247
            RV
Sbjct: 323 NRV 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190611658|gb|ACE80263.1| homogentisic acid phytyltransferase [Angelica gigas]

 Score =  300 bits (767), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 161/294 (54%), Positives = 193/294 (65%), Gaps = 59/294 (20%)

Query: 12  LQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQ 71
           L+V RC+ WN I+  +     ++ +  H  G  +    +++   K L NAAS  PL+S +
Sbjct: 29  LRVLRCQAWNTIESYSATNCRQHLVMQHAGGFTNNLSLYRRGDTKFLVNAASEQPLES-E 87

Query: 72  PDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLE 131
           P  Y+PKS   S+ NAL+AFY+FSRPHTVIGTALSI+SV+LLAVEK+SD SP+FFTGVLE
Sbjct: 88  PLSYQPKSLQGSLQNALNAFYKFSRPHTVIGTALSIISVSLLAVEKLSDFSPIFFTGVLE 147

Query: 132 AIAAALMMNIYIVGLNQLSDIEIDK-----LPL--------------------------- 159
           AI AAL MNIYIVGLNQLSDIEIDK     LPL                           
Sbjct: 148 AIVAALFMNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSVATGVILVASFAIMSFCLGWS 207

Query: 160 --------------------------LRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHV 193
                                     LRWKR+AV AAMCILAVRAV+VQ+AFYLH+QTHV
Sbjct: 208 VGSQPLLLALFISFILGTAYSINIPFLRWKRYAVVAAMCILAVRAVIVQIAFYLHVQTHV 267

Query: 194 YRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247
           Y RPA+F KP+IFATAFMSFFSVVIALFKD+PD+ GD+ +GIR+FTVRLGQKRV
Sbjct: 268 YGRPAIFPKPVIFATAFMSFFSVVIALFKDIPDIVGDQIYGIRSFTVRLGQKRV 321

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186695349|gb|ACC86836.1| chloroplast homogentisate phytyltransferase [Coriandrum sativum]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/294 (53%), Positives = 193/294 (65%), Gaps = 59/294 (20%)

Query: 12  LQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQ 71
           L+V RC+ WN I+  +   + ++ +  H  G  +    +++   K+L NAAS  PL+S +
Sbjct: 29  LRVLRCQAWNTIESYSATNIRQHLVMQHAGGFANNLSLYRRGDTKYLVNAASEQPLES-E 87

Query: 72  PDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLE 131
           P   +PKS   S+ NAL+AFY+FSRPHTVIGTALSI+SV+LLAVEK+SD SP+FFTGVLE
Sbjct: 88  PLSCQPKSLQGSLQNALNAFYKFSRPHTVIGTALSIISVSLLAVEKLSDFSPIFFTGVLE 147

Query: 132 AIAAALMMNIYIVGLNQLSDIEIDK-----LPL--------------------------- 159
           AI AAL MNIYIVGLNQLSDIEIDK     LPL                           
Sbjct: 148 AIVAALFMNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSVATGVILVTSFAIMSFCLGWS 207

Query: 160 --------------------------LRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHV 193
                                     LRWKR+AV AAMCILAVRAV+VQ+AFYLH+QTH+
Sbjct: 208 VGSLPLLLALFISFILGTAYSLNIPYLRWKRYAVVAAMCILAVRAVIVQIAFYLHVQTHI 267

Query: 194 YRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247
           Y RPA+F KP+IFAT FMSFFSVV+ALFKD+PD+ GD+ FGIR+FTVRLGQKRV
Sbjct: 268 YGRPAIFPKPVIFATGFMSFFSVVMALFKDIPDIVGDQIFGIRSFTVRLGQKRV 321

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.321	0.223	0.560	1.2e-45
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.402	0.290	0.65	6.3e-37
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.526	0.363	0.397	2e-24
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.579	0.417	0.325	7.9e-12

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 279 (103.3 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 51/91 (56%), Positives = 70/91 (76%)

Query:   157 LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSV 216
             LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA +S +++
Sbjct:   238 LPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAI 297

Query:   217 VIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247
             VIALFKD+PD+EGD+ FGI++ ++RLG KRV
Sbjct:   298 VIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 328

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/120 (65%), Positives = 98/120 (81%)

Query:   157 LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSV 216
             LPLLRWKRFA+ AAMCILAVRA++VQ+AFYLH+QTHV+ RP +F++PLIFATAFMSFFSV
Sbjct:   224 LPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSV 283

Query:   217 VIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFSTGSSLYCCN-FSWSNV 270
             VIALFKD+PD+EGDK FGIR+F+V LGQKRV     ++L + ++    +   + F WS V
Sbjct:   284 VIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKV 343

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 62/156 (39%), Positives = 98/156 (62%)

Query:    93 RFSRPHTVIGTA-LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSD 151
             + ++P   + +  LS  +V ++    +  I  L F  ++++    L   ++I  +   S 
Sbjct:   182 KINKPDLPLASGKLSFRNVVIITASSL--ILGLGFAWIVDSWP--LFWTVFISCM-VASA 236

Query:   152 IEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFM 211
               +D LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA +
Sbjct:   237 YNVD-LPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIV 295

Query:   212 SFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247
             S +++VIALFKD+PD+EGD+ FGI++ ++RLG KRV
Sbjct:   296 SIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 7.9e-12, P = 7.9e-12
 Identities = 59/181 (32%), Positives = 91/181 (50%)

Query:    93 RFSRPHTVIGTA-LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSD 151
             + ++P+  I    LS+ S  LL +     I+ L   G         + ++Y +GL  L  
Sbjct:   167 KVNKPYLPIAAGDLSVQSAWLLVI--FFAIAGLLVVGFN---FGPFITSLYSLGLF-LGT 220

Query:   152 IEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFM 211
             I    +P LR KRF VAA + I  VR  ++    Y H        P  +S P+ F T+F+
Sbjct:   221 IY--SVPPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFV 277

Query:   212 SFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYCCNFSWSNVS 271
             + F++VIA+ KD+PD+EGD+ F I T   +LG + ++ L      GS L   N+  S +S
Sbjct:   278 TLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFL------GSGLLLVNYV-SAIS 330

Query:   272 L 272
             L
Sbjct:   331 L 331

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-84
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	2e-51
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-08
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-07
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	6e-04
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  254 bits (651), Expect = 1e-84
 Identities = 117/201 (58%), Positives = 130/201 (64%), Gaps = 58/201 (28%)

Query: 105 LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL 159
           L I SV+LLAVE +SD SPLFFTG+LEA+  AL+MNIYIVGLNQL DIEIDK     LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 160 -----------------------------------------------------LRWKRFA 166
                                                                LRWKR A
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 167 VAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPD 226
           VAAA CILAVRAVVVQLAF+LHMQTHV  RPAVF++PLIFATAFM FFSVVIALFKD+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 227 LEGDKTFGIRTFTVRLGQKRV 247
           +EGD+ FGIR+F+VRLGQKRV
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRV 201

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  170 bits (433), Expect = 2e-51
 Identities = 81/230 (35%), Positives = 116/230 (50%), Gaps = 57/230 (24%)

Query: 77  PKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTG-VLEAIAA 135
           PK+PL  + + L A ++FSRPHT+IGT+LS++ + L+A+   S+   L   G +L A  A
Sbjct: 2   PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIA 61

Query: 136 ALMMNIYIVGLNQLSDIEIDK-----LPL------------------------------- 159
            L  N+YIVGLNQL+DIEID+     LPL                               
Sbjct: 62  CLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPW 121

Query: 160 -------------------LRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVF 200
                              +R KRF + AA+CI  VR V+V L  +LH Q  +     + 
Sbjct: 122 LLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLL-GGSVLI 180

Query: 201 SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVL 250
              +   T F+  F+  IA+FKD+PD+EGD+ + I TFT+RLG++ V  L
Sbjct: 181 PPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKL 230

Length = 308

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 35/226 (15%), Positives = 59/226 (26%), Gaps = 72/226 (31%)

Query: 93  RFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI 152
           R  RP   +   L  +   LLA   +  +  L       A  A  +       +N L+D 
Sbjct: 18  RLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLL-----AFLAFFLARSAGYVINDLADR 72

Query: 153 EIDKL-------PL---------------------------------------------- 159
           EID++       PL                                              
Sbjct: 73  EIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY 132

Query: 160 LRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSK---PLIFATAFMSFFSV 216
              KRF     + +     +                  AV                 +++
Sbjct: 133 PFLKRFTFLPQLVLGLAFGLGALAGAA-----------AVGGSLPLLAWLLLLAAILWTL 181

Query: 217 VIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLYC 262
              +   + D+EGD+  G+++  V  G K+   L L     S+L  
Sbjct: 182 GYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLV 227

Length = 289

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 158 PLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVV 217
           P LR KR  +   + +     +++ L  Y                PL+     +   S+ 
Sbjct: 110 PPLRLKRRPLLGELVVGLAFGLLILLGAYA--------VGGDIPSPLLLLALPVFLLSLA 161

Query: 218 IALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFSTGSSLY 261
           I L  D+ D+EGD+  GIRT  VRLG+KR   L       + L 
Sbjct: 162 ILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYALLLAAALLL 205

Length = 259

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 194 YRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVL 250
           Y +  +FS  L++A  F+   S +  +  D+ D+EGD+  G++T  + LG++R    
Sbjct: 154 YYQLTIFSLLLLYAV-FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKF 209

Length = 285

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 51/212 (24%)

Query: 88  LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDI--SPLFFTGVLEAIAAALMMNIYIVG 145
           L AF   +RPH  I   +  +  +L+A+  +  I    L F  V    +    +N Y   
Sbjct: 3   LKAFIEITRPHNCILAGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYF-- 60

Query: 146 LNQLSDIEIDKL-----PLLRWK------------RFAVAAAMC-ILAVRAVVVQLAFYL 187
                D EIDK+     PL R               FAV  A+  ++ + A +  L  Y+
Sbjct: 61  -----DYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 188 HMQTHVYR-RPAVFSKPLIFAT----------------------AFMSFF-SVVIALFKD 223
            M  + ++ +P  F   ++ A                       A  +F  +V   + KD
Sbjct: 116 LMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLAICAFLVNVAREIMKD 175

Query: 224 VPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFS 255
           + D+EGDK  G +T  + +G+KR + +   F 
Sbjct: 176 IEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG 207

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	99.89
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.88
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.88
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.87
PRK13105	282	ubiA prenyltransferase; Reviewed	99.87
PRK12882	276	ubiA prenyltransferase; Reviewed	99.87
PLN00012	375	chlorophyll synthetase; Provisional	99.87
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.86
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.85
PRK12884	279	ubiA prenyltransferase; Reviewed	99.84
PRK12875	282	ubiA prenyltransferase; Reviewed	99.84
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.84
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.84
PRK12874	291	ubiA prenyltransferase; Reviewed	99.83
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.83
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.83
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.83
PRK13106	300	ubiA prenyltransferase; Reviewed	99.83
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.82
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.81
PRK12895	286	ubiA prenyltransferase; Reviewed	99.8
PRK12872	285	ubiA prenyltransferase; Reviewed	99.8
PRK12886	291	ubiA prenyltransferase; Reviewed	99.79
PRK12888	284	ubiA prenyltransferase; Reviewed	99.79
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.78
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.78
PRK05951	296	ubiA prenyltransferase; Reviewed	99.77
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.77
PRK13592	299	ubiA prenyltransferase; Provisional	99.76
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.76
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.76
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.76
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.76
PLN02922	315	prenyltransferase	99.75
PRK12871	297	ubiA prenyltransferase; Reviewed	99.75
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.74
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.72
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.71
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.71
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.71
PRK13591	307	ubiA prenyltransferase; Provisional	99.65
PRK12873	294	ubiA prenyltransferase; Reviewed	99.62
PRK12876	300	ubiA prenyltransferase; Reviewed	99.61
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.49
PRK08238	479	hypothetical protein; Validated	99.17
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.06
PLN02776	341	prenyltransferase	98.99
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	98.87
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	97.88
KOG4581	359	consensus Predicted membrane protein [Function unk	97.83
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	94.27

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=7.7e-43  Score=324.73  Aligned_cols=173  Identities=71%  Similarity=1.129  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----------------------------
Q 023367          105 LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----------------------------  156 (283)
Q Consensus       105 l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk----------------------------  156 (283)
                      +++++.+++|+++.+|+++.++.++++++++|+|||+|++|+|||||+||||                            
T Consensus         1 l~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~l   80 (280)
T PLN02878          1 LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIM   80 (280)
T ss_pred             CchhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            3677889999999899988899999999999999999999999999999999                            


Q ss_pred             ------------------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 023367          157 ------------------------------LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIF  206 (283)
Q Consensus       157 ------------------------------iPplRlKr~pllaal~Il~v~a~iv~lg~~l~~~t~~~g~p~~~~~~v~~  206 (283)
                                                    +||+||||+++++++|+++++++++++|+|+|++++++|+|..+++++++
T Consensus        81 g~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~  160 (280)
T PLN02878         81 SFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIF  160 (280)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHH
Confidence                                          69999999999999999999999999999999999999999888899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh----hccccccccchhhhhhhhcce
Q 023367          207 ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST----GSSLYCCNFSWSNVSLCLEQT  277 (283)
Q Consensus       207 lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~----g~~~~~~~~~~~~~~~~~gh~  277 (283)
                      .++|+++|+++||++||+||+||||++|+||+|+++|+|++     +++.++|++    |+   +++..|+|++|+.||+
T Consensus       161 ~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~---~~~~~~~~~~~~~~h~  237 (280)
T PLN02878        161 ATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGA---SSSFLWSKIITVLGHG  237 (280)
T ss_pred             HHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999     889999996    66   8889999999999999


Q ss_pred             eee
Q 023367          278 YHR  280 (283)
Q Consensus       278 ~~~  280 (283)
                      +++
T Consensus       238 ~l~  240 (280)
T PLN02878        238 ILA  240 (280)
T ss_pred             HHH
Confidence            875

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.1e-38  Score=298.04  Aligned_cols=201  Identities=40%  Similarity=0.650  Sum_probs=175.9

Q ss_pred             CCCCchhhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCCh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 023367           76 KPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISP-LFFTGVLEAIAAALMMNIYIVGLNQLSDIEI  154 (283)
Q Consensus        76 ~~~~~~~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~-~~~~~lL~~lla~l~~n~~~ngINDyfD~EI  154 (283)
                      .|++.++++++.+++|||++||||++|+.++++.++++|.+...+... ..+..++.+++++.++|+|+|++|||||+|+
T Consensus         1 ~~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~i   80 (308)
T PRK12887          1 LPKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEI   80 (308)
T ss_pred             CCcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            378999999999999999999999999999999999988654443222 2466667789999999999999999999999


Q ss_pred             cc-------------------------------------------------------cccchhhHHHHHHHHHHHHHHHH
Q 023367          155 DK-------------------------------------------------------LPLLRWKRFAVAAAMCILAVRAV  179 (283)
Q Consensus       155 Dk-------------------------------------------------------iPplRlKr~pllaal~Il~v~a~  179 (283)
                      ||                                                       .||.|+||.|+..++|+..+++.
T Consensus        81 D~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~  160 (308)
T PRK12887         81 DRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV  160 (308)
T ss_pred             HhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHH
Confidence            98                                                       89999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHH
Q 023367          180 VVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYF  254 (283)
Q Consensus       180 iv~lg~~l~~~t~~~g~p~~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY  254 (283)
                      ++++|+|++.+. ..+++...++.++++++++++++++|+++||+||+||||+.|+||+|+++|+|++     +++.++|
T Consensus       161 i~~~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y  239 (308)
T PRK12887        161 IVNLGLFLHFQW-LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACY  239 (308)
T ss_pred             HHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHH
Confidence            999999988765 3455556777888889999999999999999999999999999999999999999     5888888


Q ss_pred             Hh----hccccccccchhhhhhhhcceeee
Q 023367          255 ST----GSSLYCCNFSWSNVSLCLEQTYHR  280 (283)
Q Consensus       255 ~~----g~~~~~~~~~~~~~~~~~gh~~~~  280 (283)
                      ++    |+   .....+.+..++.||++++
T Consensus       240 ~~~i~~~~---~~~~~~~~~~~~~~~~~~~  266 (308)
T PRK12887        240 LGMIAVGL---LSLPTVNPAFLIVSHLILL  266 (308)
T ss_pred             HHHHHHHH---HHhhhHHHHHHHHHHHHHH
Confidence            88    34   5677889999999998864

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.89  E-value=1.2e-22  Score=190.93  Aligned_cols=166  Identities=22%  Similarity=0.221  Sum_probs=105.9

Q ss_pred             HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (283)
Q Consensus        84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------  156 (283)
                      ....++.+++.+||.+|+.+..++.+|+..+.. ..|+.+..   ++..+..++..|.+.|++|||||+|+|+       
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            456778889999999999999999999977632 22322222   2234557777899999999999999999       


Q ss_pred             cccchhhHHHHHHH--HHHHH-----H-HHHHH-----------HHHHHHHHH--HhhhcCCCC----------------
Q 023367          157 LPLLRWKRFAVAAA--MCILA-----V-RAVVV-----------QLAFYLHMQ--THVYRRPAV----------------  199 (283)
Q Consensus       157 iPplRlKr~pllaa--l~Il~-----v-~a~iv-----------~lg~~l~~~--t~~~g~p~~----------------  199 (283)
                      +|.+|+++......  .+.+.     + .+..+           .+..+.|..  .-++.+|..                
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~~~  163 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLALPA  163 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHHHH
Confidence            88888876642221  11110     0 00000           011111210  001222221                


Q ss_pred             ---cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHH
Q 023367          200 ---FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLY  253 (283)
Q Consensus       200 ---~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~a  253 (283)
                         +....+.......+|++++|++||+||+||||+.|+||+|+++|+|++..++..
T Consensus       164 ~~~g~~~~~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~  220 (292)
T PRK13595        164 LALGAPVPWPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALA  220 (292)
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHH
Confidence               111111112334577899999999999999999999999999999999444444

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.88  E-value=3.6e-22  Score=184.42  Aligned_cols=157  Identities=18%  Similarity=0.169  Sum_probs=102.6

Q ss_pred             HHhhhhcccchhHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cccc
Q 023367           89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (283)
Q Consensus        89 ~a~~~l~RPht~iga~l~vl~g~llA~~~~~~-~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iPpl  160 (283)
                      ++|+|++||+|+..+.+++++|+++|...... ++.  ...++.+++++.++++++|.+|||||+|+|+       +|++
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            47899999999999999999999887322121 222  2234446778889999999999999999999       7888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH----------HH---HHH-HHHHHh----hhcCCCCcc---------------------
Q 023367          161 RWKRFAVAAAMCILAVRAVVV----------QL---AFY-LHMQTH----VYRRPAVFS---------------------  201 (283)
Q Consensus       161 RlKr~pllaal~Il~v~a~iv----------~l---g~~-l~~~t~----~~g~p~~~~---------------------  201 (283)
                      +++.........++.+.++++          .+   +.. .+.++.    ++.++..++                     
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~  158 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAP  158 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            887665443332222211111          00   000 001111    111111111                     


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          202 --KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       202 --~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                        ...++.....++++.++++.||+||+||||+.|++|+|+++|+|++
T Consensus       159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a  206 (283)
T TIGR01476       159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRA  206 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHH
Confidence              1112223344466778999999999999999999999999999999

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.88  E-value=1.7e-21  Score=182.97  Aligned_cols=164  Identities=18%  Similarity=0.229  Sum_probs=107.7

Q ss_pred             hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 023367           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----  156 (283)
Q Consensus        82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~-~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk----  156 (283)
                      ...++++++|+|++||+|+..+.+++++|+..+ +. .++... ....++.+++++.++++++|.+|||||+|+|+    
T Consensus        10 ~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~   87 (306)
T TIGR02056        10 PGETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GN-FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP   87 (306)
T ss_pred             ccchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence            356778899999999999999999999999853 21 122211 11223335677788999999999999999999    


Q ss_pred             ---cccchhhHHHHHHHHHHHHHHH----HH------------HHHH------HHHHHH-HhhhcCC-CC----------
Q 023367          157 ---LPLLRWKRFAVAAAMCILAVRA----VV------------VQLA------FYLHMQ-THVYRRP-AV----------  199 (283)
Q Consensus       157 ---iPplRlKr~pllaal~Il~v~a----~i------------v~lg------~~l~~~-t~~~g~p-~~----------  199 (283)
                         +|++|++.........++...+    +.            +.++      .+.|.. .+.+|+. ..          
T Consensus        88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~  167 (306)
T TIGR02056        88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYI  167 (306)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHH
Confidence               7888887665433222211111    00            1111      112210 0111111 01          


Q ss_pred             -------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 -------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 -------------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                                   ++...+++...+++++.++++.||++|+|||++.|+||+|+++|+|++
T Consensus       168 ~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a  228 (306)
T TIGR02056       168 ALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETA  228 (306)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHH
Confidence                         112223444555678889999999999999999999999999999998

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.87  E-value=2.2e-21  Score=179.10  Aligned_cols=161  Identities=20%  Similarity=0.269  Sum_probs=109.3

Q ss_pred             HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cccc
Q 023367           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (283)
Q Consensus        88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iPpl  160 (283)
                      +++|+|++|||+++++.++++.|.++|.+...  ++   ..++.++++++++.+++|.+|||+|+|+|+       +|++
T Consensus         3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~--~~---~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG   77 (279)
T PRK09573          3 IKAYFELIRPKNCIGASIGAIIGYLIASNFKI--DL---KGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG   77 (279)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHccCCc--ch---HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence            68899999999999999999999998844222  22   122335668888999999999999999999       8999


Q ss_pred             hhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhcCCCCc---------------------chHH
Q 023367          161 RWKRFAVAAAMCILAVRAVV---------------VQLAFYLHMQTHVYRRPAVF---------------------SKPL  204 (283)
Q Consensus       161 RlKr~pllaal~Il~v~a~i---------------v~lg~~l~~~t~~~g~p~~~---------------------~~~v  204 (283)
                      |++....+....++...+++               -.+..+.|... .++++..+                     ....
T Consensus        78 ~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~~-lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~  156 (279)
T PRK09573         78 RISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAKD-LKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRI  156 (279)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence            99777644433332221110               01111222211 22222110                     1122


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHH
Q 023367          205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYF  254 (283)
Q Consensus       205 ~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY  254 (283)
                      +++..+.+++++++++.||+||+|+|++.|++|+|+++|+|++..+...|
T Consensus       157 ~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~  206 (279)
T PRK09573        157 IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKIL  206 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHH
Confidence            33445556778899999999999999999999999999999994444433

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=1.4e-21  Score=182.57  Aligned_cols=154  Identities=23%  Similarity=0.223  Sum_probs=92.6

Q ss_pred             HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------cccch
Q 023367           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------LPLLR  161 (283)
Q Consensus        88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------iPplR  161 (283)
                      +|.+++.+||++|+.++++..+|.++| +..++  +   ..++.++.....-|.+.|++|||||.|.|+      =|.++
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~--~---~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~g~   74 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEID--W---LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGA   74 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCCCC--h---HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCc
Confidence            367899999999999999999999999 32222  2   122223334555666667889999999998      12222


Q ss_pred             hhHHHH-----HHHH--HH-HHHHHHHH---------HH---HHHHHHH-H-hhhcCCC---------------------
Q 023367          162 WKRFAV-----AAAM--CI-LAVRAVVV---------QL---AFYLHMQ-T-HVYRRPA---------------------  198 (283)
Q Consensus       162 lKr~pl-----laal--~I-l~v~a~iv---------~l---g~~l~~~-t-~~~g~p~---------------------  198 (283)
                      +++...     ....  ++ +.+.....         .+   ..+.|.. . -++.+|.                     
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~  154 (282)
T PRK13105         75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLA  154 (282)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            333211     1111  11 00000000         00   0111110 0 0000111                     


Q ss_pred             --CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          199 --VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       199 --~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                        ..+...+++...+.+++.+++++||+||+||||+.|+||+|+++|+|++
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a  205 (282)
T PRK13105        155 GAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRT  205 (282)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHH
Confidence              1122334455566677999999999999999999999999999999999

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=3.7e-21  Score=177.15  Aligned_cols=157  Identities=22%  Similarity=0.264  Sum_probs=105.3

Q ss_pred             HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cccc
Q 023367           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (283)
Q Consensus        88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iPpl  160 (283)
                      +++|+|++||++..++.++++.|+++|.+..+   +.  ..++..+++.+++.++.|.+|||+|+|+||       +|++
T Consensus         4 ~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~---~~--~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G   78 (276)
T PRK12882          4 VRGYLELTRPVNAVVAGVAAFIGAFIAGGILS---SP--SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG   78 (276)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence            68999999999999999999999999844321   21  112336668888999999999999999998       8899


Q ss_pred             hhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhcCCCCcch-----------------------
Q 023367          161 RWKRFAVAAAMCILAVRAVV---------------VQLAFYLHMQTHVYRRPAVFSK-----------------------  202 (283)
Q Consensus       161 RlKr~pllaal~Il~v~a~i---------------v~lg~~l~~~t~~~g~p~~~~~-----------------------  202 (283)
                      ++++........++.+.+++               ..+..+.|... ++..|..++.                       
T Consensus        79 ~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~~-lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~  157 (276)
T PRK12882         79 AVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAET-LKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLL  157 (276)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHhcccchH
Confidence            98766544333222211111               01111223211 2222321111                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHH
Q 023367          203 PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVL  250 (283)
Q Consensus       203 ~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll  250 (283)
                      ..+.+....+++++++|++||+||+|||++.|++|+|+++|+|++..+
T Consensus       158 ~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~  205 (276)
T PRK12882        158 ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYV  205 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHH
Confidence            112223334456779999999999999999999999999999999333

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.87  E-value=3.4e-21  Score=186.35  Aligned_cols=164  Identities=16%  Similarity=0.216  Sum_probs=108.4

Q ss_pred             hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 023367           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----  156 (283)
Q Consensus        82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~-~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk----  156 (283)
                      +..+++++.|++++||+|++...+++++|+..+ +. .++.+. +...++.++++..++++++|.+|||||+|+|+    
T Consensus        79 ~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~  156 (375)
T PLN00012         79 AQETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GN-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEP  156 (375)
T ss_pred             ccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCC
Confidence            466788999999999999999999999999842 21 122211 12233446777888899999999999999999    


Q ss_pred             ---cccchhhHHHHHHHHHHHHH----HHHH------------HHH------HHHHHHH-HhhhcC-CC-----------
Q 023367          157 ---LPLLRWKRFAVAAAMCILAV----RAVV------------VQL------AFYLHMQ-THVYRR-PA-----------  198 (283)
Q Consensus       157 ---iPplRlKr~pllaal~Il~v----~a~i------------v~l------g~~l~~~-t~~~g~-p~-----------  198 (283)
                         +|++++++...+....++..    .++.            ..+      ..|.|.. .+.+|+ +.           
T Consensus       157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~  236 (375)
T PLN00012        157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYI  236 (375)
T ss_pred             CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHH
Confidence               88898876654332111110    0100            001      1112210 001111 11           


Q ss_pred             ------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          199 ------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       199 ------------~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                                  ..+...++++.+++++++++++.||++|+|||++.|++|+|+++|++++
T Consensus       237 ~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a  297 (375)
T PLN00012        237 SLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETA  297 (375)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHH
Confidence                        0112233444556678889999999999999999999999999999999

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.86  E-value=2e-20  Score=173.56  Aligned_cols=165  Identities=21%  Similarity=0.216  Sum_probs=115.7

Q ss_pred             HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (283)
Q Consensus        84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------  156 (283)
                      -...++.+.|+.||++++...++...|..++...   +..  +..++.+++++++++.+++++||++|+|+||       
T Consensus         9 ~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~---~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~   83 (289)
T COG0382           9 KLKALLKLLRLDRPIFNLLLLLPALLGLLLAASG---LPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKN   83 (289)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---Cch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccC
Confidence            3456677888889999999999999999888522   222  2333447778899999999999999999999       


Q ss_pred             --cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcCC--------------------CC
Q 023367          157 --LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRP--------------------AV  199 (283)
Q Consensus       157 --iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~p--------------------~~  199 (283)
                        +|++|+++........++.+.++++               .+..+.|  .+.|+.+                    ..
T Consensus        84 RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y--~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~  161 (289)
T COG0382          84 RPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY--PFLKRFTFLPQLVLGLAFGLGALAGAAAV  161 (289)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence              8999997776444333222211111               1111112  1112111                    11


Q ss_pred             c---chHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHHH
Q 023367          200 F---SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFS  255 (283)
Q Consensus       200 ~---~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY~  255 (283)
                      .   ..+.+++..+..+++++++++||+||+||||+.|++|+|+.+|++++..+...+.
T Consensus       162 ~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~  220 (289)
T COG0382         162 GGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL  220 (289)
T ss_pred             hCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH
Confidence            1   4456777888889999999999999999999999999999999999944444443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.85  E-value=2.5e-20  Score=175.66  Aligned_cols=161  Identities=17%  Similarity=0.182  Sum_probs=104.1

Q ss_pred             HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (283)
Q Consensus        85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~-~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------  156 (283)
                      .+++++|++++||++++.+.++++.|++.+ +. .++... .+..++.++++..++++++|.+|||+|+|+|+       
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp  101 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAVSS-GA-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP  101 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHHHc-CC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence            466889999999999999999999888754 22 222221 12223445667777899999999999999999       


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH-HhhhcC-CCC--------------------
Q 023367          157 LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQ-THVYRR-PAV--------------------  199 (283)
Q Consensus       157 iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~-t~~~g~-p~~--------------------  199 (283)
                      +|++++++........++.+.++++               .+..+.|.. .+.+|+ +..                    
T Consensus       102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~  181 (314)
T PRK07566        102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAA  181 (314)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            8888887776444333222211111               001111210 001121 111                    


Q ss_pred             -----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 -----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 -----~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                           .+...+++....++++.++++.||++|+|+||+.|+||+|+++|+|++
T Consensus       182 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a  234 (314)
T PRK07566        182 FGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNA  234 (314)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHH
Confidence                 111222333344456778999999999999999999999999999988

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=5e-20  Score=169.29  Aligned_cols=156  Identities=20%  Similarity=0.268  Sum_probs=106.7

Q ss_pred             HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cc
Q 023367           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LP  158 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iP  158 (283)
                      +++++|+|++||++.+++.++++.|+++|.+.   +++  .. ++.++++.+++.+++|.+|||+|+|+|+       +|
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~--~~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPL--DE-ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---Cch--HH-HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            46899999999999999999999999988543   222  11 2235567888999999999999999998       88


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHH------------HHHH-HHHHHHhh-hcCCCCc----------------------ch
Q 023367          159 LLRWKRFAVAAAMCILAVRAVVV------------QLAF-YLHMQTHV-YRRPAVF----------------------SK  202 (283)
Q Consensus       159 plRlKr~pllaal~Il~v~a~iv------------~lg~-~l~~~t~~-~g~p~~~----------------------~~  202 (283)
                      ++|++.........++...++++            .++. +...++.. +..+...                      +.
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  155 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNE  155 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCch
Confidence            99987776443333222211110            0010 01112222 2222211                      11


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          203 PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       203 ~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                      ..+++..+.+++++++++.+|++|+||||+.|++|+|+++|+|++
T Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~  200 (279)
T PRK12884        156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIA  200 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHH
Confidence            233344456677889999999999999999999999999999999

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=3.8e-20  Score=172.85  Aligned_cols=168  Identities=25%  Similarity=0.318  Sum_probs=97.3

Q ss_pred             HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc-ccc-
Q 023367           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-PLL-  160 (283)
Q Consensus        84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~-~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDki-Ppl-  160 (283)
                      ..+.++.+++.+||+++..+..+++.|+.+|.....+ +++. +..++..++  +..|.+++++|||+|+|+|+. |+- 
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-~~~ll~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-AVALFAYFL--FPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-HHHHHHHHH--HHHHHHHhcchhhhhhhccccCCCcc
Confidence            4567888999999999999999999999999654322 3332 222221222  446788889999999999992 221 


Q ss_pred             --h-----hhHHHHHHH--HHHHHHH--------HHHHHHHHHHH--HHH---h-hhcCCC-------------------
Q 023367          161 --R-----WKRFAVAAA--MCILAVR--------AVVVQLAFYLH--MQT---H-VYRRPA-------------------  198 (283)
Q Consensus       161 --R-----lKr~pllaa--l~Il~v~--------a~iv~lg~~l~--~~t---~-~~g~p~-------------------  198 (283)
                        |     .|+....+.  .+.+.+.        +..+.++....  .++   . ++..|.                   
T Consensus        81 ~~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~~~~~~~~y~~  160 (282)
T PRK12875         81 REREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLYILPGVAAYAL  160 (282)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHHHHHHHHHHHH
Confidence              1     111111111  0111000        00011111101  111   0 011110                   


Q ss_pred             ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-HHHHHHHHh
Q 023367          199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-SVLDLYFST  256 (283)
Q Consensus       199 ---~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-~ll~~aY~~  256 (283)
                         ..++..+  ..-..+++.+++++||+||+|+|++.|+||+|+++|+|++ .+...+|+.
T Consensus       161 ~tg~~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~  220 (282)
T PRK12875        161 VSGSLPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLL  220 (282)
T ss_pred             HcCCCcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHH
Confidence               0111111  1122477889999999999999999999999999999999 344444444

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.84  E-value=3.7e-20  Score=170.56  Aligned_cols=153  Identities=25%  Similarity=0.331  Sum_probs=99.5

Q ss_pred             HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cccc
Q 023367           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (283)
Q Consensus        88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iPpl  160 (283)
                      +++|+|++|||++....++++.|++++.+..+++  .  . ++..+++.+++.+++|.+|||+|+|+|+       +|++
T Consensus         3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~--~--~-~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG   77 (277)
T PRK12883          3 LKAFIEITRPHNCILAGIVGILGSLVALGGIPPI--K--T-LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG   77 (277)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH--H--H-HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence            6789999999999999999999999884432221  1  1 1223456666778889999999999998       8888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcC-CCCcch---------HH-----------
Q 023367          161 RWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR-PAVFSK---------PL-----------  204 (283)
Q Consensus       161 RlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~-p~~~~~---------~v-----------  204 (283)
                      |+++........++...+.++               .+..+.|  +..+++ +..++.         ++           
T Consensus        78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y--~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~  155 (277)
T PRK12883         78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLY--AWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGL  155 (277)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCCcchhhHHHHHHHHHHHHHHHHHhccccH
Confidence            887765444332222211111               0011112  111121 111111         00           


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          205 -IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       205 -~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                       .++..+.+++.+++++.||++|+||||+.|++|+|+++|+|++
T Consensus       156 ~~~~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a  199 (277)
T PRK12883        156 AGYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRA  199 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHH
Confidence             0112234456678999999999999999999999999999998

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.84  E-value=7.1e-20  Score=169.57  Aligned_cols=165  Identities=21%  Similarity=0.242  Sum_probs=107.9

Q ss_pred             HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hccc---------
Q 023367           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI--EIDK---------  156 (283)
Q Consensus        88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~--EIDk---------  156 (283)
                      +++|+|++||+++.++.+++++|..+|... ..+++.   .++.+++++++++.++|.+|||||+  ++|+         
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~   78 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA   78 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence            678999999999999999999999998532 334432   2233667888999999999999999  5785         


Q ss_pred             cccchhhHHHHHHHHHHHHHH----HHHH---------HHHHH----HHHHHhh---hcCCC------------------
Q 023367          157 LPLLRWKRFAVAAAMCILAVR----AVVV---------QLAFY----LHMQTHV---YRRPA------------------  198 (283)
Q Consensus       157 iPplRlKr~pllaal~Il~v~----a~iv---------~lg~~----l~~~t~~---~g~p~------------------  198 (283)
                      +|+++++.........++...    ++.+         .+++.    .+.++..   ++...                  
T Consensus        79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~  158 (293)
T PRK06080         79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGT  158 (293)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHH
Confidence            888888776644332222211    1110         01100    0111100   00000                  


Q ss_pred             ------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367          199 ------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST  256 (283)
Q Consensus       199 ------~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~  256 (283)
                            ..+..+++......+++.++.+.||++|+||||+.|+||+|+++|+|++     .+...+|+.
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~  227 (293)
T PRK06080        159 YYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLC  227 (293)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHH
Confidence                  0112233334455567788999999999999999999999999999998     444445554

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=1.6e-19  Score=168.92  Aligned_cols=163  Identities=17%  Similarity=0.149  Sum_probs=110.1

Q ss_pred             hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhcc---CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--
Q 023367           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV---SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--  156 (283)
Q Consensus        82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~---~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk--  156 (283)
                      ++.++++++|+|++||++.+++...++.|.++|....   ..+++   ..++.++++++++..++|.+|||+|+|||+  
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF---KLLILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            4567789999999999999999999999999985311   12232   122235567777888999999999999999  


Q ss_pred             -------cccchhhHHHHHHHHHHHHHHH-----------HHHHHHH--HHHHHHhhhcCCCC-----------------
Q 023367          157 -------LPLLRWKRFAVAAAMCILAVRA-----------VVVQLAF--YLHMQTHVYRRPAV-----------------  199 (283)
Q Consensus       157 -------iPplRlKr~pllaal~Il~v~a-----------~iv~lg~--~l~~~t~~~g~p~~-----------------  199 (283)
                             +|++|++....+....++.+.+           ..+.++.  +...+++.++....                 
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~  158 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGV  158 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHH
Confidence                   8999997776444333222111           1111111  11112222221100                 


Q ss_pred             ------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 ------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 ------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                            .+...+++...+++++.+++++++++|+|+||+.|++|+|+++|++++
T Consensus       159 ~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~  212 (291)
T PRK12874        159 VAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKAT  212 (291)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhH
Confidence                  111223344455688899999999999999999999999999999988

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.83  E-value=1.3e-19  Score=172.69  Aligned_cols=163  Identities=15%  Similarity=0.275  Sum_probs=101.0

Q ss_pred             hHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----
Q 023367           83 SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----  156 (283)
Q Consensus        83 ~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~-~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-----  156 (283)
                      ...+++|+|+|++||+|++ ..++++.|..+|.+.. +++....+ .+...++...++.+++|.+|||||+|+|+     
T Consensus         7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt   84 (331)
T PRK12392          7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT   84 (331)
T ss_pred             chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCC
Confidence            3466789999999999999 6677777777775321 12221111 11112333344566788999999999999     


Q ss_pred             --cccchhhHHHHHHHHHHHHHHHH----HH-------------------HHHHHHHHH-HhhhcC-CCC----------
Q 023367          157 --LPLLRWKRFAVAAAMCILAVRAV----VV-------------------QLAFYLHMQ-THVYRR-PAV----------  199 (283)
Q Consensus       157 --iPplRlKr~pllaal~Il~v~a~----iv-------------------~lg~~l~~~-t~~~g~-p~~----------  199 (283)
                        +|++|+++...+....++...++    .+                   .+..+.|.. .+-+|+ +..          
T Consensus        85 Rpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~  164 (331)
T PRK12392         85 RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYG  164 (331)
T ss_pred             CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHH
Confidence              88888876654433222221111    10                   001111210 000122 111          


Q ss_pred             -------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 -------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 -------------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                                   .+..++++....++++++++++||++|+|||++.|+||+|+++|++++
T Consensus       165 ~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a  225 (331)
T PRK12392        165 FITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT  225 (331)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhH
Confidence                         112233445566677899999999999999999999999999999999

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.83  E-value=1.5e-19  Score=167.20  Aligned_cols=153  Identities=16%  Similarity=0.135  Sum_probs=103.9

Q ss_pred             HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cc
Q 023367           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP  158 (283)
Q Consensus        88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------iP  158 (283)
                      ++.|+|++||++.+++...++.|.++|.....+  +.  . ++..+++.+++++++|.+|||+|+|+|+         +|
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~--~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~   76 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK--T-LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV   76 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH--H-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence            689999999999999999999999988543222  21  1 2235668888999999999999999999         88


Q ss_pred             cchhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhcCCC-----------------------Cc
Q 023367          159 LLRWKRFAVAAAMCILAVR---------------AVVVQLAFYLHMQTHVYRRPA-----------------------VF  200 (283)
Q Consensus       159 plRlKr~pllaal~Il~v~---------------a~iv~lg~~l~~~t~~~g~p~-----------------------~~  200 (283)
                      ++|++....+....+..+.               +....+..+.|  ++.+....                       ..
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~  154 (282)
T TIGR01475        77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIY--PYTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTI  154 (282)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hhHhccccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9998777543332211110               00111111222  11111110                       01


Q ss_pred             c--hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          201 S--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       201 ~--~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                      +  ...+++....++++.+++++||+||+|||++.|++|+|+++|+|++
T Consensus       155 ~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a  203 (282)
T TIGR01475       155 SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAA  203 (282)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHH
Confidence            1  2223344455677889999999999999999999999999999888

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.83  E-value=1.6e-19  Score=167.27  Aligned_cols=158  Identities=18%  Similarity=0.191  Sum_probs=106.3

Q ss_pred             hHHHHHHHhhhhcccchhHH---HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---
Q 023367           83 SVINALDAFYRFSRPHTVIG---TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---  156 (283)
Q Consensus        83 ~~~~~l~a~~~l~RPht~ig---a~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---  156 (283)
                      ++++++++|+|++|||+..+   +.++++.|.++|.... ..++   ..++..+++++++.+++|.+|||+|+|+|+   
T Consensus         2 ~~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~   77 (285)
T PRK12847          2 DILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVA   77 (285)
T ss_pred             chHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCC
Confidence            45678999999999998876   5588888998885432 1222   122335667788999999999999999997   


Q ss_pred             ------cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcCCCC----------------
Q 023367          157 ------LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRPAV----------------  199 (283)
Q Consensus       157 ------iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~p~~----------------  199 (283)
                            +|++|++....+....++...+.++               .+..+.|  ++ .++...                
T Consensus        78 Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y--~~-~Kr~~~~~~~~~g~~~~~~~l~  154 (285)
T PRK12847         78 RTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLY--PL-MKRFFYWPQLFLGFTFNMGILM  154 (285)
T ss_pred             cccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--cc-cccCCcccHHHHHHHHHHHHHH
Confidence                  8889987665444333222211111               1111112  21 111100                


Q ss_pred             --------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 --------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 --------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                              .+...+++....++++.+.++.++++|+|+|++.|++|+|+++|+|++
T Consensus       155 ~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a  210 (285)
T PRK12847        155 AFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTR  210 (285)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccH
Confidence                    111223344455677889999999999999999999999999999988

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=3.1e-19  Score=168.00  Aligned_cols=158  Identities=20%  Similarity=0.184  Sum_probs=106.0

Q ss_pred             hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----
Q 023367           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----  156 (283)
Q Consensus        82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-----  156 (283)
                      +..++++++|.|++||++.+++..+++.|.++|....++  +.   .++.++++.+++.+++|.+|||+|+|||+     
T Consensus         9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT   83 (300)
T PRK13106          9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT   83 (300)
T ss_pred             hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence            346678999999999999999999999999998543222  21   12235667788899999999999999999     


Q ss_pred             ----cccchhhHHHHHHHHHHHHH----H-----------HHHHHHHHHHHHHHhhhcCCC-------------------
Q 023367          157 ----LPLLRWKRFAVAAAMCILAV----R-----------AVVVQLAFYLHMQTHVYRRPA-------------------  198 (283)
Q Consensus       157 ----iPplRlKr~pllaal~Il~v----~-----------a~iv~lg~~l~~~t~~~g~p~-------------------  198 (283)
                          +|++|++....+........    .           +.+..+..++|  ++.++...                   
T Consensus        84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~lg~~~~~~~~~G~~  161 (300)
T PRK13106         84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSY--PYMKRYTAFANYHLASIQGLAVFSGAV  161 (300)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hHHhcCCcchHHHHHHHHHHHHHHHHH
Confidence                89999977764432211110    0           00001111122  21111100                   


Q ss_pred             --Cc----c------hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          199 --VF----S------KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       199 --~~----~------~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                        .+    +      ...+++....++++++++++||+||+|+|++.|++|+|+++| +++
T Consensus       162 a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a  221 (300)
T PRK13106        162 AVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWA  221 (300)
T ss_pred             HHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhH
Confidence              00    0      011223334567889999999999999999999999999999 777

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.82  E-value=2.7e-19  Score=167.15  Aligned_cols=163  Identities=18%  Similarity=0.133  Sum_probs=108.9

Q ss_pred             HHHHHHhhhhcccchhHHHH---HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----
Q 023367           85 INALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----  156 (283)
Q Consensus        85 ~~~l~a~~~l~RPht~iga~---l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-----  156 (283)
                      .+++++|+|++||++..++.   ++++.|.++|....++  +.   .++..+++.+++.+++|.+|||+|+|+||     
T Consensus         6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt   80 (290)
T PRK12870          6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVERT   80 (290)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence            45789999999999998888   5888899888543222  21   12234567777899999999999999997     


Q ss_pred             ----cccchhhHHHHHHHHHHHHHHHHHH-----------H----HHHHHHHHHhhhcC---CC----------------
Q 023367          157 ----LPLLRWKRFAVAAAMCILAVRAVVV-----------Q----LAFYLHMQTHVYRR---PA----------------  198 (283)
Q Consensus       157 ----iPplRlKr~pllaal~Il~v~a~iv-----------~----lg~~l~~~t~~~g~---p~----------------  198 (283)
                          +|++|++..........+...++++           .    +..++|  ++.++.   |.                
T Consensus        81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~lg~~~~~~~l~g~~  158 (290)
T PRK12870         81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLY--PLAKRVFPVPQLVLAIAWGFAVLISWS  158 (290)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--hhhhhccccceeeehHHHHhHHHHHHH
Confidence                8999998776444333222211110           0    111122  111110   00                


Q ss_pred             ----CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHH
Q 023367          199 ----VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYF  254 (283)
Q Consensus       199 ----~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY  254 (283)
                          ..+...+++....++++.+++++++++|+|+|++.|++|+|+++|+|++..+...+
T Consensus       159 a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~  218 (290)
T PRK12870        159 AVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFF  218 (290)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHH
Confidence                01122334455667889999999999999999999999999999999884444333

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.81  E-value=7.2e-19  Score=166.42  Aligned_cols=66  Identities=18%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 023367           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK  156 (283)
Q Consensus        88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk  156 (283)
                      ++.|+|.+||+|...+.++++.|+.+|......+++.   .++.++++++++++..|.+|||||+|.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~   68 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKAL   68 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence            5779999999999999999999999996543445543   23336678888999999999999998544

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.80  E-value=1.6e-18  Score=162.43  Aligned_cols=159  Identities=14%  Similarity=0.131  Sum_probs=107.3

Q ss_pred             HHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 023367           87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L  157 (283)
Q Consensus        87 ~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------i  157 (283)
                      +++.|+|++||++.+.+...++.|.++|.+...  ++.  ..+ ..+++.+++-.+++++|||+|+||||         +
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~--~l~-l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI--KIL-LILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH--HHH-HHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            378999999999999999999999999854322  221  112 23446778899999999999999999         9


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhh----------cC---------------CC
Q 023367          158 PLLRWKRFAVAAAMCILAVRAVVV--------------QLAFYLHMQTHVY----------RR---------------PA  198 (283)
Q Consensus       158 PplRlKr~pllaal~Il~v~a~iv--------------~lg~~l~~~t~~~----------g~---------------p~  198 (283)
                      |++|+++...+....++...++.+              .+.++.++ .+.|          |.               ..
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~y-p~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~  155 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIID-PFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAF  155 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHhCccccHHHHHHHHHhHHHHHHHHHcCCC
Confidence            999998776544333322211110              11111111 1111          10               00


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHH
Q 023367          199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLD  251 (283)
Q Consensus       199 ~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~  251 (283)
                      .+....+++....++++.+.++++|.+|+|+|++.|++|+|+++|++++..+.
T Consensus       156 ~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~  208 (286)
T PRK12895        156 PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYIS  208 (286)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHH
Confidence            11112234555667889999999999999999999999999999999884333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.80  E-value=1.1e-18  Score=160.44  Aligned_cols=155  Identities=18%  Similarity=0.185  Sum_probs=92.6

Q ss_pred             HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc-------c
Q 023367           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-------P  158 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDki-------P  158 (283)
                      +.+++++|+.|+.|.+.+..++..+.....  ..+..+ .+    ..+++++++..++|.+|||+|+|+|+.       |
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-~~----~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-SW----LLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-HH----HHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            457899999999999999888877653211  112111 11    245577778888999999999999992       2


Q ss_pred             cchhhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH---hhhcCCCC--------------------
Q 023367          159 LLRWKRFAVAAAMCILAVRAVV----------------VQLAFYLHMQT---HVYRRPAV--------------------  199 (283)
Q Consensus       159 plRlKr~pllaal~Il~v~a~i----------------v~lg~~l~~~t---~~~g~p~~--------------------  199 (283)
                      +.|..+...+...++....++.                ..+..++|...   ..+..|..                    
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~  154 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY  154 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh
Confidence            2222222111111111111100                01111122110   01111211                    


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 ----~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                          ++...++...++++..++++++||+||+||||+.|++|+|+++|+|++
T Consensus       155 ~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t  206 (285)
T PRK12872        155 YQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT  206 (285)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHH
Confidence                112233344566667789999999999999999999999999999999

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.79  E-value=4.3e-18  Score=159.25  Aligned_cols=159  Identities=18%  Similarity=0.205  Sum_probs=105.0

Q ss_pred             HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (283)
Q Consensus        84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------  156 (283)
                      ..+++++|+|++||++.++...+++.|+++|....++  .   ..++..+++.+++.+++|++|||+|+|+|+       
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~---~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--A---SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            4678999999999999999999999999998543232  1   112224567778888999999999999999       


Q ss_pred             --cccchhhHHHHHHHHHHHHHHH-----------HHHH-HHHH-HHHHHhhhcCCCC----------------------
Q 023367          157 --LPLLRWKRFAVAAAMCILAVRA-----------VVVQ-LAFY-LHMQTHVYRRPAV----------------------  199 (283)
Q Consensus       157 --iPplRlKr~pllaal~Il~v~a-----------~iv~-lg~~-l~~~t~~~g~p~~----------------------  199 (283)
                        +|++|++..............+           ..+. ++.. ...+++.++....                      
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g  158 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRG  158 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcC
Confidence              8899997765433221111100           0000 0110 1111211211100                      


Q ss_pred             -cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 -FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 -~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                       .+...+++....++++.+.+++++++|.|+|++.|++|+|+++|++++
T Consensus       159 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~  207 (291)
T PRK12886        159 TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGS  207 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhH
Confidence             111222333344567788999999999999999999999999999988

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.79  E-value=4e-18  Score=159.08  Aligned_cols=154  Identities=17%  Similarity=0.149  Sum_probs=104.1

Q ss_pred             HHHhhhhcccchhHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 023367           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L  157 (283)
Q Consensus        88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~-~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------i  157 (283)
                      +++|+|++||+|.+++...++.+++++.... ..+++   ..++..+++.+++.+++|.+|||+|+|+|+         +
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHW---ADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            6899999999999999999999888875211 12222   112235668888999999999999999999         8


Q ss_pred             ccchhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhcCCC------------------------
Q 023367          158 PLLRWKRFAVAAAMCILAVR---------------AVVVQLAFYLHMQTHVYRRPA------------------------  198 (283)
Q Consensus       158 PplRlKr~pllaal~Il~v~---------------a~iv~lg~~l~~~t~~~g~p~------------------------  198 (283)
                      |++|++....+...+.....               +.+..+..+.|  ++ .|+..                        
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y--~~-~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g  155 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVY--PY-AKRFTNFPHAILGLAQAVGPVGAWIAVTG  155 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HH-hhcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence            99999776544332221110               00000111122  11 11100                        


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       199 ~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                      ..+...+++....++++.+.+++++++|+|+||+.|++|+|+++|+|++
T Consensus       156 ~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a  204 (284)
T PRK12888        156 TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAA  204 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhH
Confidence            0122233445556678889999999999999999999999999999988

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.78  E-value=3.2e-18  Score=161.52  Aligned_cols=169  Identities=17%  Similarity=0.168  Sum_probs=105.3

Q ss_pred             HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccccc---c
Q 023367           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKLP---L  159 (283)
Q Consensus        85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDkiP---p  159 (283)
                      .++++.|++-+||++...+..+++.|..+|.....++++.   .++..+++++++++..|.+|||||++  +|+-+   +
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   85 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSV   85 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence            4568889999999999999999999999996543456653   22336779999999999999999999  78721   1


Q ss_pred             ch----hhHHHHHHHHHHHH--HHHH---------HHHHHHHHH-HHHhhhcCCCC------------------------
Q 023367          160 LR----WKRFAVAAAMCILA--VRAV---------VVQLAFYLH-MQTHVYRRPAV------------------------  199 (283)
Q Consensus       160 lR----lKr~pllaal~Il~--v~a~---------iv~lg~~l~-~~t~~~g~p~~------------------------  199 (283)
                      .|    -|+...++..+.+.  +.++         ++.+|..-. ...+..++|..                        
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~  165 (304)
T PRK07419         86 VNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAAL  165 (304)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHH
Confidence            11    12222222111110  0000         111111100 00001222322                        


Q ss_pred             ------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367          200 ------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST  256 (283)
Q Consensus       200 ------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~  256 (283)
                            ++...+.....+.+.+..+...||++|+|.||+.|.||+|+++|+|++     .++..+|++
T Consensus       166 yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~  233 (304)
T PRK07419        166 YSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYAL  233 (304)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHH
Confidence                  111122222233355667889999999999999999999999999999     555666665

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.78  E-value=1.5e-17  Score=157.33  Aligned_cols=161  Identities=17%  Similarity=0.098  Sum_probs=109.3

Q ss_pred             hhHHHHHHHhhhhc---ccchhHHHHHHHHHHHHHHhhccC---CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 023367           82 NSVINALDAFYRFS---RPHTVIGTALSIVSVALLAVEKVS---DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID  155 (283)
Q Consensus        82 ~~~~~~l~a~~~l~---RPht~iga~l~vl~g~llA~~~~~---~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EID  155 (283)
                      ..+.++++.|+|++   ||++.....++++.|+++|.....   ..++.   .++..+++++++.+++|.+|||+|+|+|
T Consensus        24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD  100 (314)
T PRK12878         24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID  100 (314)
T ss_pred             hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34668899999999   999999999999999999854211   22221   2233667888899999999999999999


Q ss_pred             c---------cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcC---C-------CC--
Q 023367          156 K---------LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR---P-------AV--  199 (283)
Q Consensus       156 k---------iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~---p-------~~--  199 (283)
                      +         +|++|++....+....++.+.++.+               .+..+.|  +..+..   |       +.  
T Consensus       101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~~Gl~~~~~  178 (314)
T PRK12878        101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAY--PFMKRITWWPQFFLGLAFSWG  178 (314)
T ss_pred             cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHhcCCcchHHHHHHHHHH
Confidence            7         8899997776544333322211111               1111122  211110   0       00  


Q ss_pred             -----------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 -----------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 -----------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                                 .+...+++....++++.+.+.+++++|+|+|++.|++|+|+++|++++
T Consensus       179 ~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~  237 (314)
T PRK12878        179 ALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTK  237 (314)
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhH
Confidence                       111122333345567888999999999999999999999999999988

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.77  E-value=1.9e-17  Score=154.81  Aligned_cols=159  Identities=17%  Similarity=0.176  Sum_probs=98.3

Q ss_pred             HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc-------
Q 023367           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK-------  156 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk-------  156 (283)
                      ++++.|++.+||+|..++.++++.|..+|.....++++.   .++.++++++++++..|.+|||+|+|  +|+       
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            467899999999999999999999999986543456643   23346778899999999999999955  554       


Q ss_pred             ---cccchhhHHHHHHHHHHHHHHH----H---------HHHHHHHHH-HHHhhhcCCCC------cc-------hHHHH
Q 023367          157 ---LPLLRWKRFAVAAAMCILAVRA----V---------VVQLAFYLH-MQTHVYRRPAV------FS-------KPLIF  206 (283)
Q Consensus       157 ---iPplRlKr~pllaal~Il~v~a----~---------iv~lg~~l~-~~t~~~g~p~~------~~-------~~v~~  206 (283)
                         +|.+++++........++...+    .         .+.+++... ......++|..      +.       .++++
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~v  158 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLV  158 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHH
Confidence               4555564443322221111111    0         001111000 00001122211      00       01111


Q ss_pred             H-----------------HHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          207 A-----------------TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       207 l-----------------t~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                      +                 ..-..+.+..+-+.||++|+|+||+.|+||+|+++|+|++
T Consensus       159 lg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a  216 (296)
T PRK05951        159 MGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA  216 (296)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH
Confidence            1                 1112233456779999999999999999999999999998

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.77  E-value=2.2e-17  Score=153.16  Aligned_cols=164  Identities=16%  Similarity=0.165  Sum_probs=101.5

Q ss_pred             HHHHHhhhhcccchhHHHH---HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 023367           86 NALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~---l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------  156 (283)
                      +++++|+|++|||+..++.   ++++.|.++|....++  ..   .++..+++.+++.+++|.+|||+|+|+|+      
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   77 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK   77 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence            4589999999977665544   5677888887543222  11   12224567778899999999999999997      


Q ss_pred             ---cccchhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhcCCCC-------------------
Q 023367          157 ---LPLLRWKRFAVAAAMCILAVRAVV---------------VQLAFYLHMQTHVYRRPAV-------------------  199 (283)
Q Consensus       157 ---iPplRlKr~pllaal~Il~v~a~i---------------v~lg~~l~~~t~~~g~p~~-------------------  199 (283)
                         +|++|++.........++...+.+               ..+..++|  ++.++....                   
T Consensus        78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~g~~~~~g~~a  155 (282)
T PRK12848         78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIY--PFMKRYTHLPQVVLGAAFGWGIPMAFAA  155 (282)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HhHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence               899999877644433332221111               11111223  212211100                   


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHHHh
Q 023367          200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFST  256 (283)
Q Consensus       200 ----~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY~~  256 (283)
                          .+...+++.....+++.......+++|+|+|++.|++|+|+++|+|++..+...|..
T Consensus       156 ~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~  216 (282)
T PRK12848        156 VQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLA  216 (282)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHH
Confidence                111112222233455667778888999999999999999999999988444444443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.76  E-value=1e-17  Score=157.95  Aligned_cols=123  Identities=19%  Similarity=0.215  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhccc-------cccchhhHHHHHHHHHHHHHHHHHHH----------HHHHHHH----H
Q 023367          132 AIAAALMMNIYIVGLNQLSDIEIDK-------LPLLRWKRFAVAAAMCILAVRAVVVQ----------LAFYLHM----Q  190 (283)
Q Consensus       132 ~lla~l~~n~~~ngINDyfD~EIDk-------iPplRlKr~pllaal~Il~v~a~iv~----------lg~~l~~----~  190 (283)
                      ++++.+++.+.+|.+|||||+||||       +|++|+++..+.....++...++.++          +..++|.    .
T Consensus        51 ~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~i~~lY~~lm~a  130 (299)
T PRK13592         51 GVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFLFLYIYGTLMSF  130 (299)
T ss_pred             HHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666778888999999999999       99999988875554433332222211          1222330    1


Q ss_pred             HhhhcCCCCcchH---------------------------------HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcc
Q 023367          191 THVYRRPAVFSKP---------------------------------LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRT  237 (283)
Q Consensus       191 t~~~g~p~~~~~~---------------------------------v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirT  237 (283)
                      ++.++.+..++..                                 .+++..++++.+++||+.||+|| |||+++ .+|
T Consensus       131 ~~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~T  208 (299)
T PRK13592        131 WFFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVT  208 (299)
T ss_pred             HHHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-Cee
Confidence            2223322221110                                 12444566677899999999999 899975 999


Q ss_pred             cchhcchhhHHHHHHHHHh
Q 023367          238 FTVRLGQKRVSVLDLYFST  256 (283)
Q Consensus       238 Lai~lG~k~a~ll~~aY~~  256 (283)
                      +|+++|+|++..++....+
T Consensus       209 lpi~~G~kkA~~ia~~l~i  227 (299)
T PRK13592        209 YSKLFGYKKATRFIEVVTL  227 (299)
T ss_pred             echhccchhHHHHHHHHHH
Confidence            9999999999777776666

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.76  E-value=1.8e-17  Score=154.87  Aligned_cols=158  Identities=15%  Similarity=0.083  Sum_probs=101.8

Q ss_pred             HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------
Q 023367           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------  156 (283)
Q Consensus        85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk--------  156 (283)
                      ..++++|+|++||++++.+.++++.|+++|.+.  .+++.   .++.++++.+++.+++|.+|||+|+|+|+        
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            456899999999999999999999999998532  22322   12235667888899999999999999999        


Q ss_pred             -cccchhhHHHHHHHHHHHHHH------------HHHH-HHHH--HHHHHHhhhcCCCCcc-------------------
Q 023367          157 -LPLLRWKRFAVAAAMCILAVR------------AVVV-QLAF--YLHMQTHVYRRPAVFS-------------------  201 (283)
Q Consensus       157 -iPplRlKr~pllaal~Il~v~------------a~iv-~lg~--~l~~~t~~~g~p~~~~-------------------  201 (283)
                       +|++|+++........++...            +..+ .+++  +...++...|+...++                   
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~  161 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAV  161 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHh
Confidence             889999877643332221111            1111 1111  1222232123211111                   


Q ss_pred             -----hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          202 -----KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       202 -----~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                           ...+++...++++.........+.|.|.|++.|++|+|+++|++++
T Consensus       162 ~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~  212 (296)
T PRK04375        162 TGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVT  212 (296)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHH
Confidence                 1122233444455555555555677777899999999999999987

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.76  E-value=2.5e-17  Score=155.33  Aligned_cols=168  Identities=14%  Similarity=0.200  Sum_probs=113.1

Q ss_pred             HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (283)
Q Consensus        84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------  156 (283)
                      .+.++++|+|++||+++....++++.|+++|...  +.++.  . ++.++++..++.+++|.+|||+|+|+|+       
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~--~-~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPV--L-MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHH--H-HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            4567899999999999999999999999998432  23332  1 2235567777888999999999999997       


Q ss_pred             --cccchhhHHHHHHHHHHHHHHH------------H-HHHHHH--HHHHHHhhhcC-CCC-------------------
Q 023367          157 --LPLLRWKRFAVAAAMCILAVRA------------V-VVQLAF--YLHMQTHVYRR-PAV-------------------  199 (283)
Q Consensus       157 --iPplRlKr~pllaal~Il~v~a------------~-iv~lg~--~l~~~t~~~g~-p~~-------------------  199 (283)
                        +|++|+++...+....++...+            . +..++.  |...++...|+ +..                   
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a  163 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCA  163 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHH
Confidence              8999998776444332221111            1 111222  22223322222 111                   


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHHHh
Q 023367          200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFST  256 (283)
Q Consensus       200 ----~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY~~  256 (283)
                          .+...+++..++++++.......+++|.|+|++.|++|+|+++|+|++......|..
T Consensus       164 ~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~  224 (306)
T PRK13362        164 VTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYIL  224 (306)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHH
Confidence                112234456667778888888899999999999999999999999988444444444

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.76  E-value=2.9e-17  Score=154.94  Aligned_cols=166  Identities=22%  Similarity=0.239  Sum_probs=107.5

Q ss_pred             HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc-------
Q 023367           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK-------  156 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk-------  156 (283)
                      ++.+.|||..||||...++.+++.|+.+|......+++   ...+.++++++++++..|..|||+|.+  .|.       
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            34589999999999999999999999999775434443   334447889999999999999999999  773       


Q ss_pred             ----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhcCCCCc--ch-----------H
Q 023367          157 ----LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQT----------------HVYRRPAVF--SK-----------P  203 (283)
Q Consensus       157 ----iPplRlKr~pllaal~Il~v~a~iv~lg~~l~~~t----------------~~~g~p~~~--~~-----------~  203 (283)
                          +-+-+.|+.-. ..++ ++..+..+.+|+++...+                ...|+|...  .+           .
T Consensus        83 ~~g~I~~~~~k~~~~-l~l~-l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~  160 (303)
T COG1575          83 QSGLIVRQSMKPALI-LSLA-LFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGP  160 (303)
T ss_pred             ccceeecccCCHHHH-HHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHH
Confidence                33333333321 1111 111222222222222211                113554331  11           1


Q ss_pred             HHHHHH-----------------HHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367          204 LIFATA-----------------FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST  256 (283)
Q Consensus       204 v~~lt~-----------------f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~  256 (283)
                      +++...                 ...+.+..+...|+++|+|-|++.|.+|+|+++|++++     .++..+|+.
T Consensus       161 l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~  235 (303)
T COG1575         161 LIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLA  235 (303)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHH
Confidence            122111                 11233346889999999999999999999999999999     667777776

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.76  E-value=1.9e-17  Score=153.56  Aligned_cols=157  Identities=15%  Similarity=0.170  Sum_probs=102.3

Q ss_pred             HHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 023367           87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L  157 (283)
Q Consensus        87 ~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------i  157 (283)
                      ++++|+|++||++..+..++++.|+++|.+.  ..++.   .++.++++.+++.+++|.+|||+|+|+|+         +
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            3689999999999999999999999998442  22221   12235667777899999999999999999         8


Q ss_pred             ccchhhHHHHHHHHHHHHHHH-------------HHHHHHH--HHHHHHhhhcCCCCc----------------------
Q 023367          158 PLLRWKRFAVAAAMCILAVRA-------------VVVQLAF--YLHMQTHVYRRPAVF----------------------  200 (283)
Q Consensus       158 PplRlKr~pllaal~Il~v~a-------------~iv~lg~--~l~~~t~~~g~p~~~----------------------  200 (283)
                      |++|++..........+...+             ..+.++.  +.+.++...|+-..+                      
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g  155 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTG  155 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            899997765433322211111             1111111  122223212321111                      


Q ss_pred             --chHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHH
Q 023367          201 --SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVS  248 (283)
Q Consensus       201 --~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~  248 (283)
                        +...+++...++++..++.-..+.+|+|.|++.|++|+|+++|+|++.
T Consensus       156 ~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~  205 (279)
T PRK12869        156 SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSV  205 (279)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHH
Confidence              112223333444566667666677899999999999999999999883

>PLN02922 prenyltransferase

Probab=99.75  E-value=2.6e-17  Score=155.96  Aligned_cols=169  Identities=14%  Similarity=0.157  Sum_probs=103.2

Q ss_pred             HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc---ccc
Q 023367           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---LPL  159 (283)
Q Consensus        85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk---iPp  159 (283)
                      .++++.|++-+||++...+.+++++|..+|......+++..   ++..++++++.+...|.+|||||++  +|+   -.+
T Consensus        12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   88 (315)
T PLN02922         12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV   88 (315)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence            35578899999999999999999999999965434566532   2336789999999999999999998  676   111


Q ss_pred             chh----hHHHHHHHHHHH----HHHHH--------HHHHHHHHH-HHHhhhcCCCC-----------------------
Q 023367          160 LRW----KRFAVAAAMCIL----AVRAV--------VVQLAFYLH-MQTHVYRRPAV-----------------------  199 (283)
Q Consensus       160 lRl----Kr~pllaal~Il----~v~a~--------iv~lg~~l~-~~t~~~g~p~~-----------------------  199 (283)
                      .|.    |....++..|.+    ....+        ++.+|..-. ...+..++|..                       
T Consensus        89 ~~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~  168 (315)
T PLN02922         89 VNLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAF  168 (315)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHH
Confidence            111    111111111110    00000        111111100 00001122221                       


Q ss_pred             -----------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367          200 -----------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST  256 (283)
Q Consensus       200 -----------------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~  256 (283)
                                       .+..+++...-+.+.+.++.+.||++|+|.||+.|+||+|+++|+|++     +++..+|++
T Consensus       169 y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~  247 (315)
T PLN02922        169 YLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSL  247 (315)
T ss_pred             HHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHH
Confidence                             011122222333345567889999999999999999999999999999     555566665

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.75  E-value=3.4e-17  Score=153.87  Aligned_cols=159  Identities=21%  Similarity=0.221  Sum_probs=98.4

Q ss_pred             HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------
Q 023367           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------  156 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------  156 (283)
                      +++++|+|++|||+...+..+++.|..+|......+++.  ..++..+.+++.++ ++|.+|||+|+|+|+         
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~--~~~l~~l~~~l~~~-ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE--LTIKAALIGLFGFE-AGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHHHHHH-HHHHHhhHHHHhcCcchHhhhhhc
Confidence            458899999999999998899889988884211223332  11222344555554 457999999999984         


Q ss_pred             ---------cccchhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHH--HHh-hhcC----C---CCcc---
Q 023367          157 ---------LPLLRWKRFAVAAAMCILAVRA-------------VVVQLAFYLHM--QTH-VYRR----P---AVFS---  201 (283)
Q Consensus       157 ---------iPplRlKr~pllaal~Il~v~a-------------~iv~lg~~l~~--~t~-~~g~----p---~~~~---  201 (283)
                               +|+++++....+....++...+             ..+.++++.+.  ..+ .+++    |   ..+.   
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~G~~~~  159 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRNQKYPVAQLLGRTDF  159 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence                     4666776555433322222211             11122222111  111 1222    2   1111   


Q ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          202 ---------------KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       202 ---------------~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                                     ...+++..+.++++.+++++||++|+|||++.|++|+|+++|++++
T Consensus       160 ~~~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t  220 (297)
T PRK12871        160 TLFPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGT  220 (297)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHH
Confidence                           1122334455677889999999999999999999999999999988

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.74  E-value=3.8e-17  Score=152.79  Aligned_cols=163  Identities=19%  Similarity=0.170  Sum_probs=99.5

Q ss_pred             hhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--cccc---ccchh---
Q 023367           91 FYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKL---PLLRW---  162 (283)
Q Consensus        91 ~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDki---PplRl---  162 (283)
                      |++-+||++...+.++++.|..+|......+++..   ++.+++++++.++..|.+|||||.+  .|+-   .+.|.   
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~   78 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGS   78 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCc
Confidence            56889999999999999999999965434566532   2336678999999999999999998  5761   11111   


Q ss_pred             -hHHHHHHHHHHHH--H--------HH-HHHHHHHHHH-HHHhhhcCCCC------------------------------
Q 023367          163 -KRFAVAAAMCILA--V--------RA-VVVQLAFYLH-MQTHVYRRPAV------------------------------  199 (283)
Q Consensus       163 -Kr~pllaal~Il~--v--------~a-~iv~lg~~l~-~~t~~~g~p~~------------------------------  199 (283)
                       |.....+..+.+.  +        .+ .++.+|..-. ...+..++|..                              
T Consensus        79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~  158 (285)
T TIGR02235        79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS  158 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc
Confidence             2221111111100  0        00 0011111100 00111222221                              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367          200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST  256 (283)
Q Consensus       200 ~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~  256 (283)
                      ++...+....-+.+.+.++...||++|+|.||+.|.||+|+++|+|++     .++..+|++
T Consensus       159 ~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~  220 (285)
T TIGR02235       159 FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVV  220 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHH
Confidence            111222223333355668889999999999999999999999999999     555666665

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.72  E-value=1.7e-16  Score=147.44  Aligned_cols=154  Identities=15%  Similarity=0.082  Sum_probs=94.8

Q ss_pred             HHhhhhcccc---hhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------
Q 023367           89 DAFYRFSRPH---TVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------  156 (283)
Q Consensus        89 ~a~~~l~RPh---t~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------  156 (283)
                      ++|.|++|++   ......++.+.|..+|... .+..+.  ..++..+++.+++.+++|.+|||+|+|+|+         
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~--~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPL--YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcH--HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            3455555554   5555667777888887431 122111  112224556677899999999999999997         


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcCCC-----------------------
Q 023367          157 LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRPA-----------------------  198 (283)
Q Consensus       157 iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~p~-----------------------  198 (283)
                      +|++|++....+....++...++++               .+..+.|  +..++...                       
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g  156 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATY--PFMKRITYWPQLVLGLAFGWGALMGWAAVTG  156 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--chhcccccccHHHHHHHHHHHHHHHHHHHcC
Confidence            8899997766444333322211111               1111112  21111110                       


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       199 ~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                      ..+...+++....++++.+++++++++|+|+|++.|++|+|+++|+|++
T Consensus       157 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~  205 (281)
T TIGR01474       157 DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTK  205 (281)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhH
Confidence            0111223344455677889999999999999999999999999999888

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.71  E-value=1.8e-16  Score=146.57  Aligned_cols=155  Identities=15%  Similarity=0.120  Sum_probs=94.8

Q ss_pred             HHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------ccc
Q 023367           89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPL  159 (283)
Q Consensus        89 ~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------iPp  159 (283)
                      |+|+|++||++++.+.++++.|+++|.+.. +.++.   .++..+++++++.+++|.+|||+|+|+|+         +|+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            468999999999999999999999985432 12321   12235668888999999999999999999         888


Q ss_pred             chhhHHHHHHHHHHHHHHHH-------------HHHHHH--HHHHHHhhhcCCCCcc-----------------------
Q 023367          160 LRWKRFAVAAAMCILAVRAV-------------VVQLAF--YLHMQTHVYRRPAVFS-----------------------  201 (283)
Q Consensus       160 lRlKr~pllaal~Il~v~a~-------------iv~lg~--~l~~~t~~~g~p~~~~-----------------------  201 (283)
                      +|++.........++...++             +..++.  +.+.++...|+-..++                       
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~  156 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSI  156 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88877654332222211111             111121  1122231222211111                       


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          202 -KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       202 -~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                       ...+++...++++...-.-.-..+|.|.||+.|++|+|+++|+|++
T Consensus       157 ~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a  203 (280)
T TIGR01473       157 SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERIT  203 (280)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHH
Confidence             1111122222223233222334689999999999999999999988

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.71  E-value=3.4e-16  Score=146.35  Aligned_cols=157  Identities=20%  Similarity=0.164  Sum_probs=95.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc---------cccchhhH
Q 023367           96 RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---------LPLLRWKR  164 (283)
Q Consensus        96 RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk---------iPplRlKr  164 (283)
                      ||+|...+..++++|..+|... ..+++.   .++.++++++++++..|.+|||||.+  +|+         ++.+.++.
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWL-HAFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            9999999999999999999654 255543   22336778899999999999999996  453         44444433


Q ss_pred             HHHHHHHHHHH----HHHH---------------HHHHHHHHH-HHHhhhcCCCC------cch-------HH-------
Q 023367          165 FAVAAAMCILA----VRAV---------------VVQLAFYLH-MQTHVYRRPAV------FSK-------PL-------  204 (283)
Q Consensus       165 ~pllaal~Il~----v~a~---------------iv~lg~~l~-~~t~~~g~p~~------~~~-------~v-------  204 (283)
                      ..+.....++.    +.++               .+.+|.... ...+..++|..      +..       ++       
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y  156 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY  156 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH
Confidence            32221111111    0111               111111100 00101122221      000       11       


Q ss_pred             ----------HHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367          205 ----------IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST  256 (283)
Q Consensus       205 ----------~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~  256 (283)
                                .+...-..+.+.++...||+||+|+|++.|.||+|+++|+|++     +++..+|+.
T Consensus       157 vq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~  223 (284)
T TIGR00751       157 LQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVC  223 (284)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHH
Confidence                      1111123355668999999999999999999999999999999     566666655

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.71  E-value=4.2e-16  Score=146.01  Aligned_cols=159  Identities=17%  Similarity=0.110  Sum_probs=98.4

Q ss_pred             HHHHHhhhhcccchhHHHHHHHH---HHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 023367           86 NALDAFYRFSRPHTVIGTALSIV---SVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~l~vl---~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------  156 (283)
                      +++++|+|++|.++..++.+..+   .|..++.......++   ..++..+++.+++.+++|++|||+|+||||      
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~---~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~   80 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDL---KMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK   80 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence            56899999999999998877662   344444311111112   112235667788899999999999999997      


Q ss_pred             ---cccchhhHHHHHHHHHHHHHHHHHH------------HHHHH-HHHHHhhhcCCC----------C-----------
Q 023367          157 ---LPLLRWKRFAVAAAMCILAVRAVVV------------QLAFY-LHMQTHVYRRPA----------V-----------  199 (283)
Q Consensus       157 ---iPplRlKr~pllaal~Il~v~a~iv------------~lg~~-l~~~t~~~g~p~----------~-----------  199 (283)
                         +|++|++....+....++.+.++.+            .++.. ...+++.|+...          .           
T Consensus        81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~av~  160 (289)
T PLN02809         81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVK  160 (289)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHhcCcchHHHHHHHHHHHHHHHHHHHh
Confidence               8999998776544333222111110            00111 111122221110          0           


Q ss_pred             --cchHHH-HHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 --FSKPLI-FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 --~~~~v~-~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                        .+...+ .+.....+++.+.+++.+++|+|+||+.|++|+|+++|++..
T Consensus       161 g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~  211 (289)
T PLN02809        161 GSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTK  211 (289)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHH
Confidence              011111 133344456788999999999999999999999999999965

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.65  E-value=1.7e-15  Score=143.43  Aligned_cols=41  Identities=24%  Similarity=0.414  Sum_probs=35.6

Q ss_pred             HHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367          216 VVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST  256 (283)
Q Consensus       216 ~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~  256 (283)
                      ++|+++||++|+||||+.|++|+|+++|++++     .+..++|++
T Consensus       193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~  238 (307)
T PRK13591        193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLV  238 (307)
T ss_pred             HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999     444555544

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.62  E-value=1.5e-14  Score=136.32  Aligned_cols=156  Identities=17%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             HHHHHhhhhcccchhHHHHH---HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 023367           86 NALDAFYRFSRPHTVIGTAL---SIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~l---~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------  156 (283)
                      +++++|+|++||+.+.++.+   +.+.|.+++....+  +.   ..++..++...++.++++.+||+.|+|+|+      
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SL---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            35789999999998877654   44556555522211  11   122335667777888999999999999998      


Q ss_pred             ---cccchhhHHHHHHHHHHHHHHHHHHH----------------H-HHHHHHHHhhhcC-----------CCC------
Q 023367          157 ---LPLLRWKRFAVAAAMCILAVRAVVVQ----------------L-AFYLHMQTHVYRR-----------PAV------  199 (283)
Q Consensus       157 ---iPplRlKr~pllaal~Il~v~a~iv~----------------l-g~~l~~~t~~~g~-----------p~~------  199 (283)
                         +|++|++....+....++.+.++.+.                + .++...+++. ||           +..      
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~-KR~t~~~~~vlg~~~a~~~l~g  158 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSA-KRWFAYPQAILALCWGFAVLIP  158 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHhHHHHH
Confidence               89999987765544333322211110                0 0011111211 11           000      


Q ss_pred             -------cc--hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          200 -------FS--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       200 -------~~--~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                             .+  ...+++...+++++.+.+++.+++|.|+|++.|++|+|++.|++..
T Consensus       159 w~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~  215 (294)
T PRK12873        159 WAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL  215 (294)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH
Confidence                   11  1222333566688899999999999999999999999999998655

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.61  E-value=2.9e-14  Score=134.81  Aligned_cols=160  Identities=14%  Similarity=0.109  Sum_probs=96.1

Q ss_pred             HHHHHhhhhcccchhHHHHHHHHHHHHHHhh---ccCC-C-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 023367           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVE---KVSD-I-SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----  156 (283)
Q Consensus        86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~---~~~~-~-~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk----  156 (283)
                      ++++.|.|++|.+.-+=+.=-+.+|.++|..   ...+ + .|. ...++...++.+++-.+++++|||+|+||||    
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~R   80 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGG-IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPR   80 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCC-HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCC
Confidence            3578889999986666555556677778841   1111 0 011 1112225667788899999999999999999    


Q ss_pred             -----cccchhhHHHHHHHHHHHHHHH----H--------HHHHHHH-HHHHHhhhcCCCC-----------c-------
Q 023367          157 -----LPLLRWKRFAVAAAMCILAVRA----V--------VVQLAFY-LHMQTHVYRRPAV-----------F-------  200 (283)
Q Consensus       157 -----iPplRlKr~pllaal~Il~v~a----~--------iv~lg~~-l~~~t~~~g~p~~-----------~-------  200 (283)
                           +|++|++....+....+....+    .        +..+++. +..+++ .||-..           +       
T Consensus        81 T~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~-~KR~t~~~~~vLGl~~~~~~l~~~~  159 (300)
T PRK12876         81 TSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPY-TKRVTFLCHWILGLVYYLAILMNFF  159 (300)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-HhcCCchhHHHHHHHHHHHHHHHHH
Confidence                 8899997776443332211110    0        0011111 111222 222100           0       


Q ss_pred             ----c-hH------HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          201 ----S-KP------LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       201 ----~-~~------v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                          . ..      .++.+...+++..+.+++++.+|+|+||+.|++|+|+++|++++
T Consensus       160 Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a  217 (300)
T PRK12876        160 AIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKA  217 (300)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhH
Confidence                0 00      11122333455568999999999999999999999999999987

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.49  E-value=1.6e-13  Score=122.00  Aligned_cols=140  Identities=26%  Similarity=0.315  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cccchhhHHHHHHHHHH
Q 023367          103 TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRFAVAAAMCI  173 (283)
Q Consensus       103 a~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------iPplRlKr~pllaal~I  173 (283)
                      +..+++.+...+..  ...++   ..++..++++++++.++|.+|||+|+|.|+         +|.+++++........+
T Consensus         4 ~~~~~l~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASG--GPFNW---PIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHc--CCCCH---HHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            34556666333322  23333   122224556678899999999999999999         55667764432221111


Q ss_pred             HHHHH---------------HHHHHHHHHHHHH-hhhcCCCC-----------------------cchHHHHHHHHHHHH
Q 023367          174 LAVRA---------------VVVQLAFYLHMQT-HVYRRPAV-----------------------FSKPLIFATAFMSFF  214 (283)
Q Consensus       174 l~v~a---------------~iv~lg~~l~~~t-~~~g~p~~-----------------------~~~~v~~lt~f~~lf  214 (283)
                      +.+.+               .+..+..+.|... ..++.+..                       .+....+...+..++
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~~~~~~~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLILLLGFLLGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLL  158 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHH
Confidence            11111               1111111233210 12222211                       122333344454667


Q ss_pred             HHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          215 SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       215 s~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                      .......+|++|+|||++.|++|+|+++|++++
T Consensus       159 ~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~  191 (257)
T PF01040_consen  159 IFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKA  191 (257)
T ss_pred             HHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHH
Confidence            778888889999999999999999999999999

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK08238 hypothetical protein; Validated

Probab=99.17  E-value=2.5e-10  Score=113.98  Aligned_cols=153  Identities=22%  Similarity=0.167  Sum_probs=93.8

Q ss_pred             CCchhhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-
Q 023367           78 KSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-  156 (283)
Q Consensus        78 ~~~~~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-  156 (283)
                      ...+++.+..+++|+|++|||.+++..+..+ +.+.+.. ..+  +..+..++.++++..++.++++.+|||+|+|+|| 
T Consensus       181 ~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~  256 (479)
T PRK08238        181 ERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRA  256 (479)
T ss_pred             ceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcc
Confidence            3445666778999999999999999998744 7776632 122  2112222335555557788889999999999999 


Q ss_pred             --------cccchhhHHHHHHHHHHHHHHHHH-----------HHHHHHHH--HHHhhhcC-CCC---------------
Q 023367          157 --------LPLLRWKRFAVAAAMCILAVRAVV-----------VQLAFYLH--MQTHVYRR-PAV---------------  199 (283)
Q Consensus       157 --------iPplRlKr~pllaal~Il~v~a~i-----------v~lg~~l~--~~t~~~g~-p~~---------------  199 (283)
                              +|++|++....+....++...+++           +.++.+.+  .+++++|+ +..               
T Consensus       257 ~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ys~~lKr~~~~~~~~la~~~~lr~~~  336 (479)
T PRK08238        257 HPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTLAYSLRLKRKVLVDVLTLAALYTLRIIA  336 (479)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHhcCCccccchHHHHHHHHHHHH
Confidence                    889999766544433333222111           11111111  22322333 211               


Q ss_pred             ------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCC
Q 023367          200 ------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGI  235 (283)
Q Consensus       200 ------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~Gi  235 (283)
                            .+.+.| +.++..++.+..++.|...|++++++.|-
T Consensus       337 G~~a~~~~~s~w-ll~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        337 GAAAIGVALSFW-LLAFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHhccCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence                  011122 22355566788999999999999998885

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.06  E-value=3.6e-09  Score=100.01  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=55.2

Q ss_pred             HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (283)
Q Consensus        84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------  156 (283)
                      ..+++++|+|++|||.|+...+... +.+.+... .+.. . +...+.++++..++.++++.+||++|+|+||       
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~-~~~~-~-~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNL-LNPG-A-LLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhh-cccc-h-HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            3567899999999999999887444 44444221 1111 1 1122224445555778888999999999999       


Q ss_pred             --cccchhhHHHHHH
Q 023367          157 --LPLLRWKRFAVAA  169 (283)
Q Consensus       157 --iPplRlKr~plla  169 (283)
                        +|++|++....+.
T Consensus        83 RPlasG~is~~~A~~   97 (295)
T PRK12324         83 RPIASGVVSVSLAYI   97 (295)
T ss_pred             CCCCCCccCHHHHHH
Confidence              8899987665443

>PLN02776 prenyltransferase

Probab=98.99  E-value=1.8e-08  Score=97.20  Aligned_cols=71  Identities=18%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             hcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cccchhhH
Q 023367           94 FSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKR  164 (283)
Q Consensus        94 l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------iPplRlKr  164 (283)
                      +++|.-..+..+.++.|+++|.+...+  +   ..++..+++.+++.+++|++||++|+|||+         +|++|+++
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~---~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAID--L---PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            356777788888999999998543222  2   122335667788899999999999999997         99999987


Q ss_pred             HHHHH
Q 023367          165 FAVAA  169 (283)
Q Consensus       165 ~plla  169 (283)
                      ...+.
T Consensus        76 ~~A~~   80 (341)
T PLN02776         76 PHAVA   80 (341)
T ss_pred             HHHHH
Confidence            76444

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.5e-08  Score=91.51  Aligned_cols=153  Identities=18%  Similarity=0.197  Sum_probs=101.9

Q ss_pred             HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (283)
Q Consensus        84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------  156 (283)
                      -..++++|++++.|.-+..-.+.++.|+.+|..  ...++   ..++.+++...++.+..+++|.|+|+|||+       
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~---~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINP---LLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccH---HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            467899999999999999999999999999953  12233   122235556667778888999999999999       


Q ss_pred             --cccchhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHH--HHhhhcCC-----------CCcc-------
Q 023367          157 --LPLLRWKRFAVAAAMCILAVRA-------------VVVQLAFYLHM--QTHVYRRP-----------AVFS-------  201 (283)
Q Consensus       157 --iPplRlKr~pllaal~Il~v~a-------------~iv~lg~~l~~--~t~~~g~p-----------~~~~-------  201 (283)
                        +|.++++....++....+.+.+             .....|++.|.  +|.+.||.           ...|       
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaA  168 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAA  168 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeee
Confidence              8999998887766655554432             22333444442  33344441           1111       


Q ss_pred             ------hHHHHHHHHHHHH------HHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          202 ------KPLIFATAFMSFF------SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       202 ------~~v~~lt~f~~lf------s~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                            ..-+++.+.+++|      ++++..-+|      =++.|+--+|+.-|++.+
T Consensus       169 vtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D------Y~~AgiPMlPvv~G~~~t  220 (304)
T COG0109         169 VTGSISLGAILLFAIIFLWTPPHFWALALKYKDD------YKAAGIPMLPVVKGERRT  220 (304)
T ss_pred             eeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHH------HHHcCCCcccccccHHHH
Confidence                  1233344555544      344433332      257899999999999999

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=97.88  E-value=3.2e-05  Score=73.28  Aligned_cols=168  Identities=17%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             CchhhHHHHHHHhhhhcccchhHHHHHHH-HHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-
Q 023367           79 SPLNSVINALDAFYRFSRPHTVIGTALSI-VSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-  156 (283)
Q Consensus        79 ~~~~~~~~~l~a~~~l~RPht~iga~l~v-l~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-  156 (283)
                      +..+.-+.+.+.|-|++|-..-+||=+-. -+..-+|+....+..|. +..+-..=+.+++|-++++.|||+.|.|+|+ 
T Consensus        55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD~K  133 (353)
T KOG1381|consen   55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLDAK  133 (353)
T ss_pred             hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccch-hHHHHHhcccHHHhccCCceehhhhhhhhhhh
Confidence            33344444589999999999888874311 12222222222333332 1111111234577899999999999999998 


Q ss_pred             --------cccchhhHHHHHHHHHHHH--HHHHHHHHHHHHH---HH------------------HhhhcCCCCc-----
Q 023367          157 --------LPLLRWKRFAVAAAMCILA--VRAVVVQLAFYLH---MQ------------------THVYRRPAVF-----  200 (283)
Q Consensus       157 --------iPplRlKr~pllaal~Il~--v~a~iv~lg~~l~---~~------------------t~~~g~p~~~-----  200 (283)
                              +-++++..+.....+..-.  -.++++++-.|--   ..                  .+++|..+-|     
T Consensus       134 VeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAllG  213 (353)
T KOG1381|consen  134 VERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLG  213 (353)
T ss_pred             HhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhhhc
Confidence                    6667776665444332211  1233333322200   00                  0011111110     


Q ss_pred             -ch------HHHHHHHHHH--HHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367          201 -SK------PLIFATAFMS--FFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV  247 (283)
Q Consensus       201 -~~------~v~~lt~f~~--lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a  247 (283)
                       +.      +.+.+..+.+  .+++.-..+-.-+|-+-|.+-|+++.+.++|++.-
T Consensus       214 w~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK  269 (353)
T KOG1381|consen  214 WCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTK  269 (353)
T ss_pred             chhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCc
Confidence             00      1111222222  34555566677899999999999999999997644

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=97.83  E-value=5.7e-05  Score=70.37  Aligned_cols=71  Identities=17%  Similarity=0.025  Sum_probs=51.6

Q ss_pred             HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc
Q 023367           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK  156 (283)
Q Consensus        85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk  156 (283)
                      -.+.+.|.--+||...-.+..++..|+.+|..+-....+-....++ .-++.+....++|.+|.|||.-  ||+
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl-~a~avlavh~agnlvntyfdf~kgid~  130 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFL-CAFAVLAVHCAGNLVNTYFDFIKGIDH  130 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHH-HHhhheeeecccchhhhhhhhhhcccc
Confidence            4567788888999999999999999999996533322233334444 3345566778899999999976  777

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=94.27  E-value=0.0085  Score=58.37  Aligned_cols=82  Identities=15%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----
Q 023367           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----  156 (283)
Q Consensus        82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-----  156 (283)
                      +--.+.++.|||++.|.--.-..+...+|+.+|-+.   +++   -.++..-+...+..+..|++||+++.+-|.     
T Consensus        88 ~lp~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~---~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT  161 (409)
T KOG1380|consen   88 TLPGKYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSF---PTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRT  161 (409)
T ss_pred             CCCcchHHHHHHhcccceEEEEeeeccccccccccC---CCc---chhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhh
Confidence            334567889999999997777778888899887332   332   234445556677788899999999999998     


Q ss_pred             ----cccchhhHHHHHH
Q 023367          157 ----LPLLRWKRFAVAA  169 (283)
Q Consensus       157 ----iPplRlKr~plla  169 (283)
                          +|.+|++.--.+.
T Consensus       162 ~~Rplv~g~isp~hA~~  178 (409)
T KOG1380|consen  162 QNRPLVRGRISPLHAVT  178 (409)
T ss_pred             cccccccCccChHHHHH
Confidence                8888886654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 24  DRTTVVKLERY---HLKHHIRGAKD-------RSIY------HQKIKIKHLANAASGHPL 67
           D      L++Y   H+ HH++  +        R ++       QKI+    A  ASG  L
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 68  QS-NQPDDYK----PKSPLNS-VINALDAFYRFSRPHTVIGTALSIVSVALLA 114
            +  Q   YK       P    ++NA+  F      + +      ++ +AL+A
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00