Citrus Sinensis ID: 023372

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
ccccccccHHHHHHHHHHHHcccccccHHccccccccccccccccHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHccccccccc
cccccccccHHHHHHHHHHHHcHHHHHcHHHHHHHHccccccccccHHccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHccccccccc
maslaasstpaasigakemlgnplnvssavrtsapgasnpstfkpvalfskkkaappakskpvavspvneelakwygpdrriflpeglldrseipeyltgevpgdygydpfglskkpddfskwAMLGaagfiipeafnkfgancgpeavwFKTGAllldgntlnyfgknipiNLVFAVIAEIVLVGGAeyyritngldledklhpggpfdplglakdpdQFALLKVKEIKNGRLAMFAMLGFFLQAYvtgegpvenlakhlsdpfannLLTVISgnaeraptl
maslaasstpaasigakemlGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKkaappakskpvavspvneelakwygpdrRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLltvisgnaeraptl
MaslaasstpaasIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFskkkaappakskpvavspvNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
**********************************************************************ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI**********
*********************************************************************************IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
************SIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSK***************PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
*************************************************************************KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAER****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query283 2.2.26 [Sep-21-2011]
Q9XF89280 Chlorophyll a-b binding p yes no 0.950 0.960 0.804 1e-111
P27517253 Chlorophyll a-b binding p N/A no 0.766 0.857 0.470 8e-50
P12330265 Chlorophyll a-b binding p no no 0.840 0.898 0.467 8e-50
P27490268 Chlorophyll a-b binding p N/A no 0.823 0.869 0.471 2e-49
P15193278 Chlorophyll a-b binding p N/A no 0.671 0.683 0.516 5e-49
P15194274 Chlorophyll a-b binding p N/A no 0.745 0.770 0.472 6e-49
P04782266 Chlorophyll a-b binding p N/A no 0.706 0.751 0.497 1e-48
P24006278 Chlorophyll a-b binding p N/A no 0.671 0.683 0.511 1e-48
P04781267 Chlorophyll a-b binding p N/A no 0.706 0.749 0.497 1e-48
P27492266 Chlorophyll a-b binding p N/A no 0.710 0.755 0.491 2e-48
>sp|Q9XF89|CB5_ARATH Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1 Back     alignment and function desciption
 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/282 (80%), Positives = 245/282 (86%), Gaps = 13/282 (4%)

Query: 12  ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
           AS+G  EMLG PLN  +  R+SAP AS+PSTFK VALFSKKK A    +K  AVS  ++E
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58

Query: 72  LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
           LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+K         
Sbjct: 59  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118

Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 181
            WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178

Query: 182 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
           +VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLG
Sbjct: 179 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 238

Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
           FF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Arabidopsis thaliana (taxid: 3702)
>sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1 Back     alignment and function description
>sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2 Back     alignment and function description
>sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1 Back     alignment and function description
>sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1 Back     alignment and function description
>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1 Back     alignment and function description
>sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1 Back     alignment and function description
>sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1 Back     alignment and function description
>sp|P04781|CB23_PETSP Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1 Back     alignment and function description
>sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
255557841292 chlorophyll A/B binding protein, putativ 0.996 0.965 0.829 1e-128
225459918290 PREDICTED: chlorophyll a-b binding prote 0.943 0.920 0.842 1e-124
356535308287 PREDICTED: chlorophyll a-b binding prote 0.978 0.965 0.819 1e-124
255638437287 unknown [Glycine max] 0.978 0.965 0.815 1e-124
224127848290 light-harvesting complex II protein Lhcb 0.943 0.920 0.831 1e-123
356576567288 PREDICTED: chlorophyll a-b binding prote 0.978 0.961 0.812 1e-122
261351266287 chloroplast pigment-binding protein CP26 0.964 0.951 0.792 1e-117
449447521288 PREDICTED: chlorophyll a-b binding prote 0.936 0.920 0.802 1e-117
1644289283 chlorophyll a/b-binding protein CP26 in 0.957 0.957 0.770 1e-116
356530963291 PREDICTED: chlorophyll a-b binding prote 0.946 0.920 0.810 1e-115
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/293 (82%), Positives = 261/293 (89%), Gaps = 11/293 (3%)

Query: 1   MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
           MASLAAS   A S+G  EMLGNPLN S A R++AP +S PST K VALFSKKKAAPP K+
Sbjct: 1   MASLAASRA-AGSLGVSEMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKA 59

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
           KP AVSPV++ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 60  KPAAVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 119

Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
           +K          WAMLGAAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +I
Sbjct: 120 AKYQAYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSI 179

Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 230
           PINLV AVIAE+VL+GGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIK
Sbjct: 180 PINLVVAVIAEVVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIK 239

Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
           NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTV++G+AERAPTL
Sbjct: 240 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLAGSAERAPTL 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Vitis vinifera] gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera] gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255638437|gb|ACU19528.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa] gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa] gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum] Back     alignment and taxonomy information
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Cucumis sativus] gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea] Back     alignment and taxonomy information
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
TAIR|locus:2122794280 LHCB5 "light harvesting comple 0.943 0.953 0.771 1.4e-112
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.671 0.716 0.526 1.2e-47
UNIPROTKB|P12331261 CAB2R "Chlorophyll a-b binding 0.671 0.727 0.526 1.2e-47
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.671 0.711 0.509 1.1e-46
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.671 0.711 0.509 1.1e-46
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 0.671 0.711 0.509 1.1e-46
TAIR|locus:2044988265 LHCB2.2 "photosystem II light 0.671 0.716 0.521 6.2e-46
TAIR|locus:2042148265 LHCB2.1 "photosystem II light 0.671 0.716 0.521 6.2e-46
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 0.671 0.716 0.504 7.9e-46
TAIR|locus:2040944266 LHB1B1 "light-harvesting chlor 0.671 0.714 0.504 7.9e-46
TAIR|locus:2122794 LHCB5 "light harvesting complex of photosystem II 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 216/280 (77%), Positives = 233/280 (83%)

Query:    14 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELA 73
             +G  EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELA
Sbjct:     4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELA 60

Query:    74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
             KWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+K          W
Sbjct:    61 KWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARW 120

Query:   124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 183
             AMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+V
Sbjct:   121 AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 180

Query:   184 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
             L+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF
Sbjct:   181 LLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFF 240

Query:   244 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
             +QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct:   241 IQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009533 "chloroplast stromal thylakoid" evidence=IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS;IMP
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009783 "photosystem II antenna complex" evidence=IMP
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0010287 "plastoglobule" evidence=IDA
GO:0010196 "nonphotochemical quenching" evidence=IMP
GO:0009579 "thylakoid" evidence=IDA
GO:0009637 "response to blue light" evidence=IEP;RCA
GO:0010114 "response to red light" evidence=IEP;RCA
GO:0010218 "response to far red light" evidence=IEP;RCA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0009517 "PSII associated light-harvesting complex II" evidence=IDA
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XF89CB5_ARATHNo assigned EC number0.80490.95050.9607yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 2e-70
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 8e-58
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 2e-38
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 2e-38
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 7e-37
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 4e-35
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 7e-33
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 2e-31
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 2e-29
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 2e-28
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 2e-21
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 5e-11
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 6e-06
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 4e-05
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 8e-04
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 9e-04
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
 Score =  217 bits (555), Expect = 2e-70
 Identities = 116/235 (49%), Positives = 141/235 (60%), Gaps = 25/235 (10%)

Query: 52  KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
           +K      +    V+      + WYGPDR  +L  G     E P YLTGE PGDYG+D  
Sbjct: 23  RKVGNGRVTMRKTVAKAAGSGSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTA 79

Query: 112 GLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
           GLS  P+ F++          WAMLGA G + PE   K G   G EAVWFK GA +    
Sbjct: 80  GLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGAQIFSEG 138

Query: 162 TLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLG 213
            L+Y G     +LV A  ++A    ++VL+G  E YR+  G   E  D L+PGG FDPLG
Sbjct: 139 GLDYLGNP---SLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLG 195

Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
           LA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 196 LADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250

Length = 262
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 283
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.93
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.59
PLN00101250 Photosystem I light-harvesting complex type 4 prot 99.55
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 99.52
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.47
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.46
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.45
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.44
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.42
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.4
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.37
PLN00187286 photosystem II light-harvesting complex II protein 99.37
PLN00048 262 photosystem I light harvesting chlorophyll a/b bin 99.35
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.33
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.22
PHA0233735 putative high light inducible protein 97.94
PLN00084214 photosystem II subunit S (PsbS); Provisional 97.6
PLN00014250 light-harvesting-like protein 3; Provisional 97.39
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.5e-60  Score=440.22  Aligned_cols=225  Identities=37%  Similarity=0.682  Sum_probs=184.9

Q ss_pred             chhhcCCccccccccccCCCCCCCCCCCcceeeccCCCCCCCCCCCCcccCcchhhhhhhcCCCCccccCCCCCCCCCCC
Q 023372           16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIP   95 (283)
Q Consensus        16 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~~lP~g~~~~~~~P   95 (283)
                      .|.+.|.++.           .++++..+++++|+.++...++        +...+...+|+++|++|||+     .++|
T Consensus         7 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~w~p~-----~~~P   62 (286)
T PLN00187          7 ASSFMGTRVP-----------DVASNSGRIVARFGFGKKKKAA--------KKAKKKSSKVGADRPLWFPG-----AKAP   62 (286)
T ss_pred             chhhhhhhhc-----------ccccCccchhhhhccCcccccC--------CccccCccCCCCCccccCCC-----CCCc
Confidence            3557776664           1344778889999753321111        01112356789999999997     8999


Q ss_pred             CCCCCCCCCCccccCCCCCCCccc-----------------------------------------------------cch
Q 023372           96 EYLTGEVPGDYGYDPFGLSKKPDD-----------------------------------------------------FSK  122 (283)
Q Consensus        96 ~~LdGslpGD~GFDPLGLs~~pe~-----------------------------------------------------l~R  122 (283)
                      +|||||||||||||||||+++||.                                                     |+|
T Consensus        63 ~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGR  142 (286)
T PLN00187         63 EWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGR  142 (286)
T ss_pred             ccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhH
Confidence            999999999999999999988762                                                     579


Q ss_pred             hhhhccccchhhhhhccCCCCCCCCcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeeccCccCCCC
Q 023372          123 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK  202 (283)
Q Consensus       123 ~AMLAvvG~lv~E~l~~~G~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~g~~~~d~  202 (283)
                      |||||++||++||+++        +..|+++|.+.+..+ ..|++.+.++.+..++++|+++||++|.+|+.+ .+.++.
T Consensus       143 wAMLAvaG~lvpEll~--------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~-~~~~~~  212 (286)
T PLN00187        143 WAMLATLGALSVEALT--------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKR  212 (286)
T ss_pred             HHHHHhhchhhHHhcc--------CCccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccC-CCCCCC
Confidence            9999999999999974        236999997655433 358887777666677799999999999999865 334467


Q ss_pred             CCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhh
Q 023372          203 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS  274 (283)
Q Consensus       203 ~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~  274 (283)
                      .||||+ ||||||.+|+++++++|++|||||||||+|++||++|+.+||+||++||.+|++||+|+||+++|.
T Consensus       213 ~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~n~~~~~~  285 (286)
T PLN00187        213 LYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS  285 (286)
T ss_pred             CCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence            899997 999999999999999999999999999999999999999999999999999999999999999975

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 2e-48
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 3e-48
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 7e-48
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 3e-29
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 1e-28
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 2e-28
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 1e-25
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 2e-25
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 3e-25
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 5e-25
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 2e-22
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 1e-19
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 5e-18
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 3e-17
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 8e-16
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 9e-14
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
           WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK          WA
Sbjct: 16  WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
           MLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +
Sbjct: 73  MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 182 IVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
           ++L+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 191
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
            GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 4e-54
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 1e-46
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 2e-44
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 3e-44
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 2e-42
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 3e-42
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
 Score =  174 bits (442), Expect = 4e-54
 Identities = 105/226 (46%), Positives = 134/226 (59%), Gaps = 19/226 (8%)

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
           K      V    + WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F
Sbjct: 2   KSATTKKVASSGSPWYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 58

Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
           SK          WAMLGA G + PE  ++ G     EAVWFK G+ +     L+Y G   
Sbjct: 59  SKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF-GEAVWFKAGSQIFSEGGLDYLGNPS 117

Query: 171 PIN---LVFAVIAEIVLVGGAEYYRITN--GLDLEDKLHPGGPFDPLGLAKDPDQFALLK 225
            ++   ++     +++L+G  E YRI      ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK 177

Query: 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
           VKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN  +
Sbjct: 178 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.48
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.42
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.39
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.33
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.31
2wsc_3 276 LHCA3, type II chlorophyll A/B binding protein fro 99.18
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
Probab=100.00  E-value=9.5e-58  Score=414.02  Aligned_cols=205  Identities=50%  Similarity=0.921  Sum_probs=174.7

Q ss_pred             hhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCC
Q 023372           72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFG  141 (283)
Q Consensus        72 ~~~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G  141 (283)
                      .++|||+||++|||  +++ .++|+||||++|||||||||||++++|+          |+||||||++|+++||+++++|
T Consensus        13 ~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           13 GSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             TCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            56899999999994  454 6899999999999999999999988764          6899999999999999998877


Q ss_pred             CCCCCCcchhhccccccCCCcccccCCCchh--H-HHHHHHHHHHHHhcceeeeeccCc--cCCCCCCCCCCCCCCCCCC
Q 023372          142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI--N-LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAK  216 (283)
Q Consensus       142 ~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi--~-~~~~~~~qvll~G~~E~~r~~~g~--~~~d~~~PG~~FDPLgl~~  216 (283)
                      ... ++..|+++|...+++..++|++.+...  + +..++++|+++||++|.+|+.++.  ...|+.||||+||||||.+
T Consensus        90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~  168 (232)
T 2bhw_A           90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAD  168 (232)
T ss_dssp             CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTC
T ss_pred             cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhcc
Confidence            543 367899999877766667888765321  2 344557899999999999876522  2246789999999999999


Q ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhcccccCCCC
Q 023372          217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL  283 (283)
Q Consensus       217 d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~~~~~~~~~  283 (283)
                      |+++++++|++|||||||||+|++|+++|+.+||++|++||.+|++||+++|+++++   .+.+|++
T Consensus       169 ~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~---~~~~~~~  232 (232)
T 2bhw_A          169 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYA---TNFVPGK  232 (232)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGT---TTTCSCC
T ss_pred             chHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHH---HhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999984   4677763
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 283
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 9e-61
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  189 bits (482), Expect = 9e-61
 Identities = 104/214 (48%), Positives = 131/214 (61%), Gaps = 19/214 (8%)

Query: 73  AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SK 122
           + WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F           +
Sbjct: 1   SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 57

Query: 123 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVI 179
           WAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   ++    
Sbjct: 58  WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 116

Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
            +++L+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 117 CQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 176

Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
           +M GFF+QA VTG+GP+ENLA HL+DP  NN   
Sbjct: 177 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWN 210

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.54
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=1.4e-56  Score=399.54  Aligned_cols=199  Identities=51%  Similarity=0.945  Sum_probs=161.6

Q ss_pred             hhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCCC
Q 023372           73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFGA  142 (283)
Q Consensus        73 ~~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G~  142 (283)
                      +.|||+||++|||  ++. ++.|+|||||||||||||||||++++++          ||||||||++|++++|++++++.
T Consensus         1 ~~~~~~~r~~~~~--~~~-~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~   77 (218)
T d1rwta_           1 SPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV   77 (218)
T ss_dssp             CTTSSTTCCCTTG--GGG-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCCCcccCC--ccc-cCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCC
Confidence            4799999999996  243 6789999999999999999999998753          78999999999999999988754


Q ss_pred             CCCCCcchhhccccccCCCcccccCCCch--hH-HHHHHHHHHHHHhcceeeeeccC--ccCCCCCCCCCCCCCCCCCCC
Q 023372          143 NCGPEAVWFKTGALLLDGNTLNYFGKNIP--IN-LVFAVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKD  217 (283)
Q Consensus       143 ~~~p~~~W~~aG~~~l~g~~l~y~g~~~p--i~-~~~~~~~qvll~G~~E~~r~~~g--~~~~d~~~PG~~FDPLgl~~d  217 (283)
                      .. ....|++++........+.++..+..  ++ +....+.++++++.+|.+|...+  ....+..|||+.|||+++.++
T Consensus        78 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~  156 (218)
T d1rwta_          78 KF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADD  156 (218)
T ss_dssp             CC-SCCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCS
T ss_pred             CC-CCcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCCCccccccCCC
Confidence            33 35678888766555555555544321  12 22233445566888998876542  123467788888999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhc
Q 023372          218 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG  275 (283)
Q Consensus       218 ~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~  275 (283)
                      +++++++|++||||||||||||+||++|+++||++|++||.+|++||+++||++.+..
T Consensus       157 ~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~~  214 (218)
T d1rwta_         157 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATN  214 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTTS
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999977654
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure