Citrus Sinensis ID: 023374

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHccccEEEEccEEEEEcccccccHHHHHHHHHcccccEEEccHHHHHHcHHHHHHHHHHcccEEEEEccccccEEEEcccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHccccEEEcccEEEEEcccccccHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHcccEEEEEccccccEEEEEccccccccccHHHHHHHHcccccccHHHHHHHHHHcccccccccHHcccccccccccccccccHcccccccccccccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MALQEKLDRFKKQQEKCQETLSNIAaksgasratttsrptpaaastaarssppvkfsndteRLQHINSIRKSPVGAQIKRVIDRLLETRqaftpeeinrdcyvdvnanKAVFDslrnnpkvhydgkrfsykskhdlkdKSQLLVLVRKFpegiavidlkdsypTVMEDLQALKAAGQIWllsnfdsqediaypndprvpikadddlKLLFRdialpsdmLDIEKDLqkngmkpatnTQKRRAAAQIQgissknkpkkkkheISKRtkltnahlPELFQKLNGS
Flexible Loop (DISEMBL)
malqekldRFKKQQEKCQETLsniaaksgasratttsrptpaaastaarssppvkfsndtERLQHinsirkspvgaqIKRVIDRLLETrqaftpeeinrdcyvdVNANKAVfdslrnnpkvhydgkrfsykskhdlkdkSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAaaqiqgissknkpkkkkheiskrtkltnahlpelfqklngs
Low Complexity Region (SEG)
MALQEKLDRFKKQQEKCQETLSNIAAKSGasratttsrptpaaastaarssppVKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGIssknkpkkkkheiskRTKLTNAHLPELFQKLNGS
Disordered region (IsUnstruct)
*************************************************************************VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSD*****************************************************************
Disordered Region (DISOPRED)
*ALQ**********************************************************************GAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDL******************************************TNAHLPELFQKL***
Disordered Region (DISEMBL)
MALQEKLDRFKKQQEKCQETLSNI**********************************DTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKP******************************KRTKLTNAHLPELFQKLNGS
Disordered Region (DISPRO)
*****KL*RFKKQQEKCQETLSN***********************************************KSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKP**********************************LT*A****LFQ*L***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q54KJ8	276	General transcription fac	yes	no	0.876	0.898	0.277	5e-14
P79011	285	Transcription initiation	yes	no	0.657	0.652	0.266	2e-12
Q2KJF9	289	General transcription fac	yes	no	0.618	0.605	0.271	3e-07
Q9D902	292	General transcription fac	yes	no	0.614	0.595	0.280	1e-06
P29084	291	Transcription initiation	yes	no	0.544	0.529	0.269	2e-06
P29540	288	General transcription fac	N/A	no	0.448	0.440	0.285	9e-06
P36145	328	Transcription initiation	yes	no	0.590	0.509	0.251	0.0001

>sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 140/270 (51%), Gaps = 22/270 (8%)

Query: 10  FKKQQEKCQETLSNIAAKSGASRATTTSRP---TPAAASTAARSSPPVKFSNDTERLQHI 66
           FK+ Q K  ETL++I   S ++ +     P       +S+A R S    ++ +T R + +
Sbjct: 6   FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGGGSSSANRQSSI--YTANTLRDKQV 63

Query: 67  NSIRKSPVGAQIKRVIDRL--LETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD 124
              ++ P    +  +++ L  LE   A T E ++   ++ ++    + + LRNN K+   
Sbjct: 64  ---KEKPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDH 119

Query: 125 GK-RFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSN 183
           G  RFS+K K +++ +  +L L+  +P GI V +L +SY     D++ LK   QI+ +  
Sbjct: 120 GNDRFSFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKA 179

Query: 184 FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAA 243
            +S  DI +PND R+ +    +L  +++ I LP++  D+EK+++  G+    + +  R  
Sbjct: 180 AESACDIIFPNDERLRVPLSSELVDMWKSIKLPNEA-DLEKEMKDAGLSVVESVESAR-- 236

Query: 244 AQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
              Q  S+K K ++KK    + TK+TN H+
Sbjct: 237 ---QTKSTKLKKERKK----RITKVTNTHI 259

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
Dictyostelium discoideum (taxid: 44689)

>sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfa2 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 20/206 (9%)

Query: 76  AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSK 133
           +Q+   ++ L E  +  T EEI    Y+       + + L+ N +++YD   + F++K  
Sbjct: 81  SQLHYAVEYLKERNEPKTAEEI--ASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPL 138

Query: 134 HDLKDKSQLLVLV--RKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDI 190
           H+++  + LL  +  +K   G+++ +L+D +P V  +L+ L+  G++ LL +  D    +
Sbjct: 139 HNIRSGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 198

Query: 191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT---NTQKRRAAAQIQ 247
            + ND       D + + ++ +I +P   LD+  +L K G+KP +   +T KR    Q  
Sbjct: 199 VWRNDKSCDCHVDKEFQQVWHEIPIPP-TLDLASELGKYGLKPTSVDPSTVKRAGHNQT- 256

Query: 248 GISSKNKPKKKKHEISKRTKLTNAHL 273
                  PK+KK + ++R K+TN HL
Sbjct: 257 -------PKQKKPK-TRRGKITNTHL 274

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2KJF9|T2EB_BOVIN General transcription factor IIE subunit 2 OS=Bos taurus GN=GTF2E2 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)

Query: 92  FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
            T EEI +   ++D+   +  +   ++L NNPK+     ++++K K++LKDK  LL L+ 
Sbjct: 95  LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 154

Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
           +  + G+  I L+D    +    +A+KA G   L  N   ++ I + ND       D++ 
Sbjct: 155 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 214

Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
           + L+R + + S D   IE+ L++ G+    ++  ++ A     I  + KP  +K    +R
Sbjct: 215 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKVAP----IQRRKKPASQK---KRR 267

Query: 266 TKLTNAHL 273
            K  N HL
Sbjct: 268 FKTHNEHL 275

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Bos taurus (taxid: 9913)

>sp|Q9D902|T2EB_MOUSE General transcription factor IIE subunit 2 OS=Mus musculus GN=Gtf2e2 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 15/189 (7%)

Query: 92  FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
            T EEI +   ++D+   +  +   ++L NNPK+     ++++K K++LKDK  LL L+ 
Sbjct: 98  LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 157

Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
              + G+  I L+D    +    +A+KA G QI  +S  D ++ I + ND       D++
Sbjct: 158 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 216

Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
            + L+R + + S D   IE+ L++ G+     +  ++ A+    I  + KP  +K    +
Sbjct: 217 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS----IQRRKKPASQK---KR 269

Query: 265 RTKLTNAHL 273
           R K  N HL
Sbjct: 270 RFKTHNEHL 278

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Mus musculus (taxid: 10090)

>sp|P29084|T2EB_HUMAN Transcription initiation factor IIE subunit beta OS=Homo sapiens GN=GTF2E2 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
           ++L NNPK+     ++++K K++++DK  LL L+ +  + G+  I L+D    +    +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181

Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
           +KA G   L  N   ++ I + ND       D++ + L+R + + S D   IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241

Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
           +     +  ++ A     I  + KP  +K    +R K  N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Homo sapiens (taxid: 9606)

>sp|P29540|T2EB_XENLA General transcription factor IIE subunit 2 OS=Xenopus laevis GN=gtf2e2 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 20/147 (13%)

Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
           ++L NNPK+     ++++K K++LKDK  LL L+ K  +    GI + D+++  P   + 
Sbjct: 119 EALVNNPKIEIIDGKYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKA 178

Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEK---- 224
           ++AL    QI  ++  D ++ I + ND       D++ + L+R +  P D +D EK    
Sbjct: 179 IKAL--GDQIVFVTRPDKKK-ILFYNDKSCQFTVDEEFQKLWRSV--PVDSMDDEKIEEY 233

Query: 225 -------DLQKNGMKPATNTQKRRAAA 244
                   +Q++G K     QKR+ A 
Sbjct: 234 LKRQGISSMQESGPKKIIPVQKRKKAT 260

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Xenopus laevis (taxid: 8355)

>sp|P36145|T2EB_YEAST Transcription initiation factor IIE subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFA2 PE=1 SV=3

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)

Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
           Y+ +  +  V + L+   ++ +D K+  F Y S +D+   S+LL L+R    F +GI+  
Sbjct: 150 YLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTF-KGISCK 208

Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
           DLKD +P   E +  L+   +I +L +  D      + N        D++   ++ ++ L
Sbjct: 209 DLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQL 268

Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
           P    ++ + LQ  G+KPA+        A I+  + + + KKK+    ++ K+TN H+  
Sbjct: 269 PQ-FAELPRKLQDLGLKPAS-----VDPATIKRQTKRVEVKKKRQ---RKGKITNTHMTG 319

Query: 276 LFQ 278
           + +
Sbjct: 320 ILK 322

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224058567	284	predicted protein [Populus trichocarpa]	0.985	0.982	0.808	1e-126
225426874	285	PREDICTED: general transcription factor	0.982	0.975	0.825	1e-123
449457584	277	PREDICTED: general transcription factor	0.975	0.996	0.809	1e-121
255537377	282	Transcription initiation factor IIE subu	0.978	0.982	0.763	1e-114
357481679	270	General transcription factor IIE subunit	0.954	1.0	0.749	1e-113
388499682	282	unknown [Medicago truncatula]	0.989	0.992	0.722	1e-112
388501696	278	unknown [Lotus japonicus]	0.982	1.0	0.752	1e-112
357481685	307	General transcription factor IIE subunit	0.954	0.879	0.736	1e-111
356513413	279	PREDICTED: general transcription factor	0.985	1.0	0.766	1e-111
356528032	280	PREDICTED: general transcription factor	0.989	1.0	0.766	1e-110

>gi|224058567|ref|XP_002299546.1| predicted protein [Populus trichocarpa] gi|222846804|gb|EEE84351.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/287 (80%), Positives = 252/287 (87%), Gaps = 8/287 (2%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIA----AKSGASRATTTSRPTPAAASTAARS-SPPVK 55
           MALQE+LDRFKKQQEKCQ TL++IA    +KS  ++ T    P P   ST+AR+ +P VK
Sbjct: 1   MALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAP---STSARTPAPAVK 57

Query: 56  FSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSL 115
           FSNDTERLQHINSIRK+P GAQIKRVID LLETRQAFTPE+IN  CYVD+N+NKAVFDSL
Sbjct: 58  FSNDTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKAVFDSL 117

Query: 116 RNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAA 175
           RNNPKVHYDGKRFSYKSKHDLKDKSQLLVL+RKFPEGIAVIDLKDSYP+VM+DLQALKA 
Sbjct: 118 RNNPKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDSYPSVMDDLQALKAV 177

Query: 176 GQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT 235
           GQIWLLSNFDSQEDIAYPNDPR+ IK DDDLK LFR I LP DMLDIEKDLQKNGMKPAT
Sbjct: 178 GQIWLLSNFDSQEDIAYPNDPRMVIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKPAT 237

Query: 236 NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG 282
           NT KRRAAAQ+QGIS+K K KKKKHEISKRTKLTNAHLPELF+ L  
Sbjct: 238 NTAKRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKNLGS 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426874|ref|XP_002283557.1| PREDICTED: general transcription factor IIE subunit 2 [Vitis vinifera] gi|297742556|emb|CBI34705.3| unnamed protein product [Vitis vinifera]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/280 (82%), Positives = 249/280 (88%), Gaps = 2/280 (0%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
           MALQE L +FKKQQEKCQ TL++IAAK+G+S+ T   + TPAA +     +  VKFSNDT
Sbjct: 1   MALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTPAAPTKPPTPA--VKFSNDT 58

Query: 61  ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
           ERLQHINSIRK+PVGAQIKRVID LLETRQAFTPE+IN  CYVD NANKAVFDSLRNNPK
Sbjct: 59  ERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKAVFDSLRNNPK 118

Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
           V YDGKRF+YKSKHDLKD+SQLLVLVRKFPEGIAVIDLKDSYP+VMEDLQALKAAGQ+WL
Sbjct: 119 VSYDGKRFAYKSKHDLKDRSQLLVLVRKFPEGIAVIDLKDSYPSVMEDLQALKAAGQVWL 178

Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
           LSNFDSQEDIAYPNDPRVPIK DDDLK  FR I LP DMLDIEKDLQKNGMKPATNT KR
Sbjct: 179 LSNFDSQEDIAYPNDPRVPIKVDDDLKQFFRTIELPRDMLDIEKDLQKNGMKPATNTAKR 238

Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
           RA AQ+ GI+SK+KPKKKKHEISKRTKLTNAHLPELFQ L
Sbjct: 239 RAMAQVHGIASKSKPKKKKHEISKRTKLTNAHLPELFQNL 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457584|ref|XP_004146528.1| PREDICTED: general transcription factor IIE subunit 2-like [Cucumis sativus] gi|449499921|ref|XP_004160955.1| PREDICTED: general transcription factor IIE subunit 2-like [Cucumis sativus]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/278 (80%), Positives = 244/278 (87%), Gaps = 2/278 (0%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
           MALQE+LDRFKKQQE+CQ TLS IAA    S++T    P PAA S A   +P VKFSNDT
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAA-SIARPPAPAVKFSNDT 59

Query: 61  ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
           ERLQHINSIRKSPVGAQIKRVID LLETRQAFTPE+IN  CYVD+N+NKAV+DSLRNNPK
Sbjct: 60  ERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPK 119

Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
           VHYDG+RFSYKSKHDLKDK+QLL LVRKFPEGIAVIDLKD+YP+VMEDLQALKA+GQ+WL
Sbjct: 120 VHYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWL 179

Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
           LSNFDSQEDIAYPNDPR+ IK DDDLK LFR+I LP DMLD+EKDLQKNGMKPATNT KR
Sbjct: 180 LSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKR 239

Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
           RA AQ    SSK KPKKKK EISKRTKLTNAHLPELF+
Sbjct: 240 RANAQ-HVASSKPKPKKKKQEISKRTKLTNAHLPELFK 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537377|ref|XP_002509755.1| Transcription initiation factor IIE subunit beta, putative [Ricinus communis] gi|223549654|gb|EEF51142.1| Transcription initiation factor IIE subunit beta, putative [Ricinus communis]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/283 (76%), Positives = 243/283 (85%), Gaps = 6/283 (2%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSR---PTPAAASTAARSSPPVKFS 57
           M LQE+L++FK+QQEKCQ TL++IAAK+G+ + + T +   P+P    T     P VKFS
Sbjct: 1   MDLQEQLNKFKRQQEKCQTTLTSIAAKAGSHKPSITPKIVAPSPIIPRTPG---PAVKFS 57

Query: 58  NDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRN 117
           NDTERLQHI+SIRK+PVGAQIKRVID L ETRQAFTPE+IN  CYVDVN+NKAVFDSLRN
Sbjct: 58  NDTERLQHIHSIRKAPVGAQIKRVIDLLFETRQAFTPEQINEACYVDVNSNKAVFDSLRN 117

Query: 118 NPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQ 177
           NPKVHYDG+ FSYKSKHDLKDK QLL L+R+F EGIAVIDLKD+YPTVMEDLQALKAAG 
Sbjct: 118 NPKVHYDGRHFSYKSKHDLKDKKQLLYLIREFKEGIAVIDLKDAYPTVMEDLQALKAAGG 177

Query: 178 IWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
           IWLLSNFDSQEDIAYPNDP+  IK DD+LK+ FR+I LP DMLDIEKDLQKNGMKPATNT
Sbjct: 178 IWLLSNFDSQEDIAYPNDPKAVIKVDDELKVKFREIELPRDMLDIEKDLQKNGMKPATNT 237

Query: 238 QKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
            KRRAAAQ+QGIS+K K KKK  EISK+TKLTNAHLPELFQ L
Sbjct: 238 AKRRAAAQVQGISTKPKTKKKTKEISKKTKLTNAHLPELFQNL 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481679|ref|XP_003611125.1| General transcription factor IIE subunit [Medicago truncatula] gi|355512460|gb|AES94083.1| General transcription factor IIE subunit [Medicago truncatula] gi|388501522|gb|AFK38827.1| unknown [Medicago truncatula]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/283 (74%), Positives = 236/283 (83%), Gaps = 13/283 (4%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
           MALQ KLDRFKKQQEKCQ TLS+IAA    ++A + S P   A         PVKFS DT
Sbjct: 1   MALQGKLDRFKKQQEKCQSTLSSIAA----NKAVSASVPNALA---------PVKFSTDT 47

Query: 61  ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
           ERLQHINSIRK+PVGAQ+KRVID L ETRQA T E+IN  C+VD+ ANK VFD++R NPK
Sbjct: 48  ERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPK 107

Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
           V YDG+RFSYKSKH L+DK +LL L+RKFPEGIAVIDLKDSYPTVMEDLQALK   +IWL
Sbjct: 108 VRYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQALKGGREIWL 167

Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
           LSNFDSQEDIAYPNDP+VPIK DDDLK LFR I LP DM+DIE+DLQKNGMKPATNT KR
Sbjct: 168 LSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKR 227

Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
           R+AAQ++GISSK KPKKKK+EI+KRTKLTNAHLPELFQ LN S
Sbjct: 228 RSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNNS 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499682|gb|AFK37907.1| unknown [Medicago truncatula]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/281 (72%), Positives = 232/281 (82%), Gaps = 1/281 (0%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
           MALQE+LDRFKKQQEKCQ TLS+IA+    SR   T      A++    S   VKFS+DT
Sbjct: 1   MALQEQLDRFKKQQEKCQSTLSSIASSKVGSRKPNTPVVATNASANGRNSRTGVKFSSDT 60

Query: 61  ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
           ERLQ IN+IRK+PVGAQ+KRVID LLETRQAFTPE+IN  CYVD+ ANK VF SLR NPK
Sbjct: 61  ERLQQINNIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMRANKDVFGSLRKNPK 120

Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
           V YDG+RFSYK+K+ LK+KS+LL L+R++PEG+AV DLKD+YP VMEDLQALKAAGQIWL
Sbjct: 121 VEYDGQRFSYKAKYGLKEKSELLQLIRRYPEGLAVFDLKDAYPNVMEDLQALKAAGQIWL 180

Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
           LSNFDSQ+DI YPNDP+  IK DDDLK LFR I LP DM+DIEKDLQKNGMKPATNT KR
Sbjct: 181 LSNFDSQDDITYPNDPKANIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKR 240

Query: 241 RAAAQIQGISSKNKPK-KKKHEISKRTKLTNAHLPELFQKL 280
           R+AAQI G+SSK K   +KK+EI+KRTKLTNAHLPELFQ L
Sbjct: 241 RSAAQIDGVSSKPKSNFRKKNEITKRTKLTNAHLPELFQNL 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501696|gb|AFK38914.1| unknown [Lotus japonicus]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/283 (75%), Positives = 238/283 (84%), Gaps = 5/283 (1%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
           MALQEKLDRFK+QQEKCQ TL++IA  S  + AT   R TP     A       KFSNDT
Sbjct: 1   MALQEKLDRFKRQQEKCQSTLTSIA--STKASATQNGRRTPTPTPPAPVPV---KFSNDT 55

Query: 61  ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
           ERLQHINSIRK+PVGAQ+KRVI  L E+RQAFT E+IN  CYVD+ ANK VFDS+R NPK
Sbjct: 56  ERLQHINSIRKAPVGAQMKRVIALLFESRQAFTMEQINEACYVDMRANKDVFDSMRKNPK 115

Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
           V +DG++FSYKSKHDL+DK +LL L+RKFPEGIAVIDLKDSYPTV+EDLQALKAA +IWL
Sbjct: 116 VKFDGEKFSYKSKHDLRDKKELLFLIRKFPEGIAVIDLKDSYPTVLEDLQALKAAREIWL 175

Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
           LSNFDSQEDIAYPNDP+VPIK DDDLK LFR I LP DM+DIE+DLQKNGMKPATNT KR
Sbjct: 176 LSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKR 235

Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
           R+AAQ+QGISSK KPKKKK+EI+KRTKLTNAHLPELFQ L  S
Sbjct: 236 RSAAQMQGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLKDS 278

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481685|ref|XP_003611128.1| General transcription factor IIE subunit [Medicago truncatula] gi|355512463|gb|AES94086.1| General transcription factor IIE subunit [Medicago truncatula]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/288 (73%), Positives = 236/288 (81%), Gaps = 18/288 (6%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
           MALQ KLDRFKKQQEKCQ TLS+IAA    ++A + S P   A         PVKFS DT
Sbjct: 33  MALQGKLDRFKKQQEKCQSTLSSIAA----NKAVSASVPNALA---------PVKFSTDT 79

Query: 61  ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
           ERLQHINSIRK+PVGAQ+KRVID L ETRQA T E+IN  C+VD+ ANK VFD++R NPK
Sbjct: 80  ERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPK 139

Query: 121 VHYDGKRFSYK-----SKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAA 175
           V YDG+RFSYK     SKH L+DK +LL L+RKFPEGIAVIDLKDSYPTVMEDLQALK  
Sbjct: 140 VRYDGERFSYKVTFILSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQALKGG 199

Query: 176 GQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT 235
            +IWLLSNFDSQEDIAYPNDP+VPIK DDDLK LFR I LP DM+DIE+DLQKNGMKPAT
Sbjct: 200 REIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPAT 259

Query: 236 NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
           NT KRR+AAQ++GISSK KPKKKK+EI+KRTKLTNAHLPELFQ LN S
Sbjct: 260 NTAKRRSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNNS 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513413|ref|XP_003525408.1| PREDICTED: general transcription factor IIE subunit 2-like [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/283 (76%), Positives = 243/283 (85%), Gaps = 4/283 (1%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
           MALQEKLD+FKKQQEKCQ TLS       AS+A  T +     ++    ++P VKFSNDT
Sbjct: 1   MALQEKLDKFKKQQEKCQTTLS----SIAASKAAATQKSAAHGSANGRNAAPAVKFSNDT 56

Query: 61  ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
           ERLQHINSIRK+PVGAQ+KRVID LLETRQAFTPE+IN  CYVD+ ANK VF++LR NPK
Sbjct: 57  ERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINGACYVDMKANKDVFENLRKNPK 116

Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
           V+YDG+RFSYKSK+ LKDK++LL L+RK+PEG+AVIDLKD+YPTVMEDLQALKAAGQIWL
Sbjct: 117 VNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWL 176

Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
           LSNFDSQEDIAYPNDP+V IK DDDLK LFR I LP DM+DIEKDLQKNGMKPATNT +R
Sbjct: 177 LSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAQR 236

Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
           R+AAQIQGISSK KPKKKK EISKRTKLTNAHLPELFQ LN S
Sbjct: 237 RSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQTLNSS 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528032|ref|XP_003532609.1| PREDICTED: general transcription factor IIE subunit 2-like [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/283 (76%), Positives = 242/283 (85%), Gaps = 3/283 (1%)

Query: 1   MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
           MALQE+LD+FKKQQEKCQ TLS IAA   A+    ++    A    AA   P VKFSNDT
Sbjct: 1   MALQERLDKFKKQQEKCQTTLSTIAATKAAAATQKSATHASANGRNAA---PAVKFSNDT 57

Query: 61  ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
           ERLQHINSIRK+PVGAQ+KRVID LLETRQAFTPE+IN  CYVD+ ANK VF++LR NPK
Sbjct: 58  ERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMKANKDVFENLRKNPK 117

Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
           V+YDG+R SYKSK+ +KDK++LL LVRK+PEG+AVIDLKD+YPTVMEDLQA+KAAGQIWL
Sbjct: 118 VNYDGQRLSYKSKYGIKDKTELLQLVRKYPEGLAVIDLKDAYPTVMEDLQAMKAAGQIWL 177

Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
           LSNFDSQEDIAYPNDP+V IK DDDLK LFR I LP DM+DIEKDLQKNGMKPATNT +R
Sbjct: 178 LSNFDSQEDIAYPNDPKVHIKVDDDLKHLFRSIELPRDMIDIEKDLQKNGMKPATNTAQR 237

Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
           R+AAQIQGISSK KPKKKK EISKRTKLTNAHLPELFQ LN S
Sbjct: 238 RSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQNLNSS 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2128580	286	AT4G20330 [Arabidopsis thalian	0.992	0.982	0.616	3e-85
TAIR|locus:2133139	275	AT4G21010 [Arabidopsis thalian	0.961	0.989	0.535	1.1e-69
DICTYBASE|DDB_G0287307	276	gtf2e2 "transcription initiati	0.805	0.826	0.251	4.7e-16
POMBASE|SPCC1672.08c	285	tfa2 "transcription factor TFI	0.572	0.568	0.254	8.8e-11
UNIPROTKB|Q5ZIE1	290	GTF2E2 "Uncharacterized protei	0.519	0.506	0.304	2.3e-08
UNIPROTKB|E2R5J2	291	GTF2E2 "Uncharacterized protei	0.530	0.515	0.284	3.2e-08
UNIPROTKB|F1MUX7	289	GTF2E2 "General transcription	0.530	0.519	0.284	4.1e-08
UNIPROTKB|Q2KJF9	289	GTF2E2 "General transcription	0.530	0.519	0.284	4.1e-08
RGD|1310134	279	Gtf2e2 "general transcription	0.530	0.537	0.293	6.6e-08
MGI|MGI:1915403	292	Gtf2e2 "general transcription	0.530	0.513	0.293	7.6e-08

TAIR|locus:2128580 AT4G20330 [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 175/284 (61%), Positives = 207/284 (72%)

Query:     1 MALQEKLDRFKKQQEKCQETLSNIAAKSGXXXXXXXXXXXXXXXXXXXXXXXXVKFSNDT 60
             MAL+E+LD+F KQQ KCQ TLS+IA+                           VKFS+DT
Sbjct:     1 MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60

Query:    61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
             ERLQ+IN+IRK+PVGAQIKRVID L E R A TPE+IN  C+VD++ANKAVFDSLR NPK
Sbjct:    61 ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120

Query:   121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
              HYDG+RFSYK+ HD+ DK+QLL LVRK+ +GIAV+DLKD+YP VMEDL+AL A+G I+L
Sbjct:   121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

Query:   181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
             LSN  SQEDIAYPND +  IK DD+ K LFRDI +P+DMLD+EK+L K G+KPATNT +R
Sbjct:   181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAER 238

Query:   241 RAAAQIQGIXXX-XXXXXXXXXXXXRTKLTNAHLPELFQKLNGS 283
             RAAAQ  GI                RTKLTNAHLPELFQ LNGS
Sbjct:   239 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQNLNGS 282

GO:0005634 "nucleus" evidence=ISM

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

TAIR|locus:2133139 AT4G21010 [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 150/280 (53%), Positives = 190/280 (67%)

Query:     1 MALQEKLDRFKKQQEKCQETLSNIAAKSGXXXXXXXXXXXXXXXXXXXXXXXXVKFSNDT 60
             MAL+E+LD+F KQQEKCQ TLS+I++                            KFS +T
Sbjct:     1 MALREQLDKFNKQQEKCQSTLSSISSSRTALSRSYVPAATTSQKPNVFRG----KFSENT 56

Query:    61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
             ++LQHI +IR S VGAQ+K VID L +TR A+T E+IN  CYVD++ NKAVFDSLR NPK
Sbjct:    57 KQLQHITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPK 116

Query:   121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQI-W 179
             VHYDG+RFSYK+ H++KDK QLL  V K  + I V DLKD+YP VMEDL++LK++G+I W
Sbjct:   117 VHYDGRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFW 176

Query:   180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
             LLSN DS+E   Y N+   P K DD+LK LFRDI +PSDML++EK+L K G+KPATN  +
Sbjct:   177 LLSNTDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAE 234

Query:   240 RRAAAQIQGIXXX-XXXXXXXXXXXXRTKLTNAHLPELFQ 278
             RRAA Q+ G+                RTKLTN+H+ ELFQ
Sbjct:   235 RRAAEQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQ 274

GO:0005634 "nucleus" evidence=ISM

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

DICTYBASE|DDB_G0287307 gtf2e2 "transcription initiation factor IIE2" [Dictyostelium discoideum (taxid:44689)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 59/235 (25%), Positives = 110/235 (46%)

Query:    10 FKKQQEKCQETLSNIAAKSGXXXXXXXXXXXXXXXXXXXXXXXXVKFSNDTERLQHINSI 69
             FK+ Q K  ETL++I   S                          + S  T        +
Sbjct:     6 FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGGGSSSANR--QSSIYTANTLRDKQV 63

Query:    70 RKSPVGAQIKRVIDRL--LETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGK- 126
             ++ P    +  +++ L  LE   A T E ++   ++ ++    + + LRNN K+   G  
Sbjct:    64 KEKPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDHGND 122

Query:   127 RFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDS 186
             RFS+K K +++ +  +L L+  +P GI V +L +SY     D++ LK   QI+ +   +S
Sbjct:   123 RFSFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKAAES 182

Query:   187 QEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRR 241
               DI +PND R+ +    +L  +++ I LP++  D+EK+++  G+    + +  R
Sbjct:   183 ACDIIFPNDERLRVPLSSELVDMWKSIKLPNEA-DLEKEMKDAGLSVVESVESAR 236

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

POMBASE|SPCC1672.08c tfa2 "transcription factor TFIIE beta subunit, TFIIEB, Tfa2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 165 (63.1 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 44/173 (25%), Positives = 90/173 (52%)

Query:    76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSK 133
             +Q+   ++ L E  +  T EEI    Y+       + + L+ N +++YD +   F++K  
Sbjct:    81 SQLHYAVEYLKERNEPKTAEEIAS--YLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPL 138

Query:   134 HDLKDKSQLLVLV--RKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDI 190
             H+++  + LL  +  +K   G+++ +L+D +P V  +L+ L+  G++ LL +  D    +
Sbjct:   139 HNIRSGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 198

Query:   191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT---NTQKR 240
              + ND       D + + ++ +I +P   LD+  +L K G+KP +   +T KR
Sbjct:   199 VWRNDKSCDCHVDKEFQQVWHEIPIPPT-LDLASELGKYGLKPTSVDPSTVKR 250

GO:0000991 "core RNA polymerase II binding transcription factor activity" evidence=TAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005673 "transcription factor TFIIE complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IDA

UNIPROTKB|Q5ZIE1 GTF2E2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 49/161 (30%), Positives = 86/161 (53%)

Query:    93 TPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHY-DGKRFSYKSKHDLKDKSQLLVLVR 147
             T EEI +   ++D+   +  +   ++L NNPK+   DGK F++K K++LKDK  LL L+ 
Sbjct:    97 TLEEILDETQHLDIGLKQKQWLMNEALVNNPKIEVVDGK-FAFKPKYNLKDKKALLRLLD 155

Query:   148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
             K  + G+  I L++    +    +A+KA G QI  ++  D ++ + Y ND       D++
Sbjct:   156 KHDQQGLGGIFLEEIEEGLPNAHKAIKALGDQILFVTRPDKRQ-LLYYNDKSCHFSVDEE 214

Query:   206 LKLLFRDIALPSDMLD---IEKDLQKNGMKPATNTQKRRAA 243
              + L+R I  P D +D   +E+ L++ G+        R+ A
Sbjct:   215 FRKLWRSI--PMDSIDEDKVEEYLKRQGISSMREAGPRKIA 253

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2R5J2 GTF2E2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 45/158 (28%), Positives = 83/158 (52%)

Query:    93 TPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHY-DGKRFSYKSKHDLKDKSQLLVLVR 147
             T EEI +   ++D+   +  +   ++L NNPK+   DGK +++K K++LKDK  LL L+ 
Sbjct:    98 TLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGK-YAFKPKYNLKDKKALLRLLD 156

Query:   148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
             K  + G+  I L+D    +    +A+KA G   +  N   ++ I + ND       D++ 
Sbjct:   157 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQIIFVNRPDKKKILFFNDKSCQFSVDEEF 216

Query:   207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAA 243
             + L+R + + S D   IE+ L++ G+     +  ++ A
Sbjct:   217 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVA 254

GO:0005737 "cytoplasm" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

UNIPROTKB|F1MUX7 GTF2E2 "General transcription factor IIE subunit 2" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 45/158 (28%), Positives = 84/158 (53%)

Query:    93 TPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHY-DGKRFSYKSKHDLKDKSQLLVLVR 147
             T EEI +   ++D+   +  +   ++L NNPK+   DGK +++K K++LKDK  LL L+ 
Sbjct:    96 TLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGK-YAFKPKYNLKDKKALLRLLD 154

Query:   148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
             +  + G+  I L+D    +    +A+KA G   L  N   ++ I + ND       D++ 
Sbjct:   155 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 214

Query:   207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAA 243
             + L+R + + S D   IE+ L++ G+    ++  ++ A
Sbjct:   215 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKVA 252

GO:0005737 "cytoplasm" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

UNIPROTKB|Q2KJF9 GTF2E2 "General transcription factor IIE subunit 2" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 45/158 (28%), Positives = 84/158 (53%)

Query:    93 TPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHY-DGKRFSYKSKHDLKDKSQLLVLVR 147
             T EEI +   ++D+   +  +   ++L NNPK+   DGK +++K K++LKDK  LL L+ 
Sbjct:    96 TLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGK-YAFKPKYNLKDKKALLRLLD 154

Query:   148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
             +  + G+  I L+D    +    +A+KA G   L  N   ++ I + ND       D++ 
Sbjct:   155 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 214

Query:   207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAA 243
             + L+R + + S D   IE+ L++ G+    ++  ++ A
Sbjct:   215 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKVA 252

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

RGD|1310134 Gtf2e2 "general transcription factor IIE, polypeptide 2, beta" [Rattus norvegicus (taxid:10116)]

 Score = 143 (55.4 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 47/160 (29%), Positives = 86/160 (53%)

Query:    93 TPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHY-DGKRFSYKSKHDLKDKSQLLVLVR 147
             T EEI +   ++D+   +  +   ++L NNPK+   DGK +++K K++LKDK  LL L+ 
Sbjct:    98 TLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGK-YAFKPKYNLKDKKALLRLLD 156

Query:   148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
                + G+  I L+D    +    +A+KA G QI  +S  D ++ I + ND       D++
Sbjct:   157 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 215

Query:   206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAA 244
              + L+R + + S D   IE+ L++ G+     +  ++ A+
Sbjct:   216 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS 255

GO:0005634 "nucleus" evidence=ISO

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

MGI|MGI:1915403 Gtf2e2 "general transcription factor II E, polypeptide 2 (beta subunit)" [Mus musculus (taxid:10090)]

 Score = 143 (55.4 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 47/160 (29%), Positives = 86/160 (53%)

Query:    93 TPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHY-DGKRFSYKSKHDLKDKSQLLVLVR 147
             T EEI +   ++D+   +  +   ++L NNPK+   DGK +++K K++LKDK  LL L+ 
Sbjct:    99 TLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGK-YAFKPKYNLKDKKALLRLLD 157

Query:   148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
                + G+  I L+D    +    +A+KA G QI  +S  D ++ I + ND       D++
Sbjct:   158 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 216

Query:   206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAA 244
              + L+R + + S D   IE+ L++ G+     +  ++ A+
Sbjct:   217 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS 256

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
COG5174	285	COG5174, TFA2, Transcription initiation factor IIE	6e-12

>gnl|CDD|227501 COG5174, TFA2, Transcription initiation factor IIE, beta subunit [Transcription]

 Score = 64.2 bits (156), Expect = 6e-12
 Identities = 47/223 (21%), Positives = 101/223 (45%), Gaps = 18/223 (8%)

Query: 57  SNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLR 116
             D +R+Q I+   +    + +   I+ L +  +  + EEI     +D++ N  +    +
Sbjct: 64  RMDRDRIQSIDRGVQRHTNSYLHAAIEYLKQHDRPLSFEEIKDYLSIDLHNNYVLLLKKK 123

Query: 117 NNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR--KFPEGIAVIDLKDSYPTVMEDLQALKA 174
              ++      F +K  + ++    LL ++R     EG+++  L D +P V+  ++ L+ 
Sbjct: 124 RRIRIDATHSTFMFKPLYSIRSVEDLLKVLRSQGTEEGLSMKKLMDGWPNVVPFVEELEK 183

Query: 175 AGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKP 233
           + +I +L ++ D    + + N   +    D + K L+  + +P+   D+ ++L   G+KP
Sbjct: 184 SNEILILRTDKDGSPVVVWNNTQNLECPVDPEFKSLWNQVRIPT-YHDLIRELNTAGLKP 242

Query: 234 AT---NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
            +   NT+KR                KKK    ++ K+TN H+
Sbjct: 243 TSVDPNTKKR-----------PTIKIKKKKRSRRKGKITNTHV 274

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG3095	284	consensus Transcription initiation factor IIE, bet	100.0
COG5174	285	TFA2 Transcription initiation factor IIE, beta sub	100.0
PF02186	65	TFIIE_beta: TFIIE beta subunit core domain; InterP	99.68
cd07977	75	TFIIE_beta_winged_helix TFIIE_beta_winged_helix do	99.6
PHA02943	165	hypothetical protein; Provisional	93.22
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	89.94
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.48
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	86.99
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	84.24
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	84.19
COG3355	126	Predicted transcriptional regulator [Transcription	82.27
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.25

>KOG3095 consensus Transcription initiation factor IIE, beta subunit [Transcription]

Probab=100.00  E-value=4.7e-64  Score=458.44  Aligned_cols=274  Identities=34%  Similarity=0.536  Sum_probs=236.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC-ccCCCCCCCCCccccccchhhhcccccCCChhHHHHH
Q 023374            1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPA-AASTAARSSPPVKFSNDTERLQHINSIRKSPVGAQIK   79 (283)
Q Consensus         1 ~~~~~~~~~f~~qq~~~~~tl~s~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~s~~~~~~q~~nt~~~~~v~tqi~   79 (283)
                      |+|-++|+.|++++++|+.++.++|.+.   .++++|+..+. +++++.+..+.++++.++.+++.++.++++++|++++
T Consensus         3 ~~Ll~ql~aFkK~~~~~p~v~~~~~ps~---~~t~ss~~~~~~~~~~~~p~~~~lk~~~~s~~~~~ls~~~~~~fgt~~k   79 (284)
T KOG3095|consen    3 PALLRQLEAFKKKAASTPVVAKKSAPSR---FPTPSSRANSNKASKASKPNLPRLKKDANSSNLKSLSNSSQSHFGTHAK   79 (284)
T ss_pred             HHHHHHHHHHHHHHhcCcccccCCCCCC---CCCCcchhcchhhhccCCCCCcccccccchhhHHhhcCcccccchhHHH
Confidence            6899999999999999999888844432   12333444333 3555556677788888899999999999999999999


Q ss_pred             HHHHHHhccCCCCCH-HHHhhhhCCCC-CCcHHHHHhhhCCCceEEeCCeeeeecCCCCCCHHHHHHHHhhCC--CCeeh
Q 023374           80 RVIDRLLETRQAFTP-EEINRDCYVDV-NANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFP--EGIAV  155 (283)
Q Consensus        80 ~vvd~Lk~~~~plt~-~eI~~~~~~di-~~~~~l~e~L~~npKI~~d~~~f~yKP~y~Ik~k~~LL~lL~k~~--~Gi~v  155 (283)
                      .|+.++.++..+++. ++|.|.|++|+ ..+..++|+|++||||+||++||+|||.|+|+|+++||.+|++|.  +||+|
T Consensus        80 iv~~~~~~h~~~~~~PE~i~E~~~~d~~~~n~~l~esLkkNpri~~d~~~FsfKp~y~Ird~~~Ll~llr~~~~~~GI~v  159 (284)
T KOG3095|consen   80 IVIYLLTEHLRGLTHPEIIDELQHYDLKHKNWLLLESLKKNPRIEYDPRTFSFKPTYNIRDKKQLLKLLRKHDTLGGILV  159 (284)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHhhhccHHHHHHHhhCCceEecCceeeccCccccCCHHHHHHHHHhcCccCceeh
Confidence            999999999999999 77799999999 777889999999999999999999999999999999999999998  69999


Q ss_pred             hhHhhhhhcHHHHHHHHHHcCcEEEE-ecCCCCceeEecCCCCCCCCCCHHHHHHhhhcCCCCChhHHHHHHHHCCCCCc
Q 023374          156 IDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPA  234 (283)
Q Consensus       156 ~dLkD~~p~~~~~I~~Le~~g~Ilvl-~~kd~~~~ivf~ND~~~~~~VD~efk~lW~~v~vP~d~~Di~k~L~~~Glkp~  234 (283)
                      +||+||||+|+++|++|++.|+|||+ +.+|++++||||||.+|.+.|||||+.|||+|.||.++.||++||+++||+||
T Consensus       160 ~DL~d~~pNv~~~lk~L~~s~eIl~l~t~~d~k~kivf~ND~~~~~~VDdEFk~LWr~V~Ip~~~~dle~eL~k~GLkp~  239 (284)
T KOG3095|consen  160 SDLKDAWPNVDEDLKELEKSGEILVLRTPKDDKPKIVFYNDKSCSFSVDDEFKKLWRSVTIPSMELDLEEELQKQGLKPM  239 (284)
T ss_pred             HHhhhcccchHHHHHHHhcCCcEEEEeccCCCCCceEEecCCCCCcccCHHHHHHHHhCCCChHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999999988 55689999999999999999999999999999999878999999999999999


Q ss_pred             cchhhhHHHHHhhcccCCCCcccccccccCCCcccCCchHHHHhhhcC
Q 023374          235 TNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG  282 (283)
Q Consensus       235 ~~~~~r~~~~~~~~~~~k~k~kkKKr~~~rr~K~TNtHm~~llkd~s~  282 (283)
                      ++.++++++.+    ..++-++|||++++|++|+|||||. ++.||+.
T Consensus       240 ~~v~p~~~~~~----~~~k~~~Kkk~~~~r~~kitnthl~-~l~d~~~  282 (284)
T KOG3095|consen  240 KDVDPKKAAPQ----QRKKDKKKKKFKKTRRNKITNTHLK-ILEDYSS  282 (284)
T ss_pred             cccchHHhhhh----hhhhhhhhhhhcccccchhhhhHHH-HHHhhcc
Confidence            97666665531    1111123455677789999999999 7788864

>COG5174 TFA2 Transcription initiation factor IIE, beta subunit [Transcription]

Probab=100.00  E-value=2.5e-53  Score=378.58  Aligned_cols=213  Identities=21%  Similarity=0.393  Sum_probs=194.0

Q ss_pred             ccchhhhcccccCCChhHHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC--CeeeeecCCC
Q 023374           58 NDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG--KRFSYKSKHD  135 (283)
Q Consensus        58 ~~~~~~q~~nt~~~~~v~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~--~~f~yKP~y~  135 (283)
                      .|-.+.|++++|.++|-.+++|++++||+++++|++|+||.+++.+|++.  .+++.|+.+.+|.||+  +||.|+|.|+
T Consensus        65 ~~~~~~q~~d~gv~~H~~s~lh~aieylk~~~~P~~~eEi~dyls~~l~~--~~v~Llkk~~ri~~d~~~~Tf~fkply~  142 (285)
T COG5174          65 MDRDRIQSIDRGVQRHTNSYLHAAIEYLKQHDRPLSFEEIKDYLSIDLHN--NYVLLLKKKRRIRIDATHSTFMFKPLYS  142 (285)
T ss_pred             hhHhhhccccccccccchHHHHHHHHHHHHcCCcccHHHHHHHhcCccch--hHHHHHhhccCceeccCCceEEeecccc
Confidence            34445599999999999999999999999999999999999988888876  7889999999999997  4999999999


Q ss_pred             CCCHHHHHHHHhhCC--CCeehhhHhhhhhcHHHHHHHHHHcCcEEEEe-cCCCCceeEecCCCCCCCCCCHHHHHHhhh
Q 023374          136 LKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIWLLS-NFDSQEDIAYPNDPRVPIKADDDLKLLFRD  212 (283)
Q Consensus       136 Ik~k~~LL~lL~k~~--~Gi~v~dLkD~~p~~~~~I~~Le~~g~Ilvl~-~kd~~~~ivf~ND~~~~~~VD~efk~lW~~  212 (283)
                      |++.++||.+|+.+.  .||++++|+||||+|...|++||+.++|+|++ .+||.+++||+|+..|.++||+||+.||+.
T Consensus       143 irS~~~llk~lrsq~t~~Gls~k~L~Dgwpnv~~~veeLek~~eIliLrt~kDg~p~~vW~n~~n~~c~vD~ef~~~W~~  222 (285)
T COG5174         143 IRSVEDLLKVLRSQGTEEGLSMKKLMDGWPNVVPFVEELEKSNEILILRTDKDGSPVVVWNNTQNLECPVDPEFKSLWNQ  222 (285)
T ss_pred             ccCHHHHHHHHHhhcccccccHHHhhcCCCcccHHHHHHhhcCcEEEEeecCCCCceEEEeCCCCcCCCCCHHHHHHHHh
Confidence            999999999999986  89999999999999999999999999999996 789999999999999999999999999999


Q ss_pred             cCCCCChhHHHHHHHHCCCCCccchhhhHHHHHhhcccCCCCcc-cccccccCCCcccCCchHHHHhhhcC
Q 023374          213 IALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPK-KKKHEISKRTKLTNAHLPELFQKLNG  282 (283)
Q Consensus       213 v~vP~d~~Di~k~L~~~Glkp~~~~~~r~~~~~~~~~~~k~k~k-kKKr~~~rr~K~TNtHm~~llkd~s~  282 (283)
                      |.||. ..||.++|..+||+|++.++.         ..+++..+ |+||+++|++|||||||.|||.|||+
T Consensus       223 V~ip~-~~dL~reL~~~GLKptsvdp~---------t~KR~t~~ik~kk~~~RkgkITNTH~~gil~dys~  283 (285)
T COG5174         223 VRIPT-YHDLIRELNTAGLKPTSVDPN---------TKKRPTIKIKKKKRSRRKGKITNTHVKGILLDYSQ  283 (285)
T ss_pred             CCCch-HHHHHHHHHhcCCCccccCcc---------hhccccccccccccccccccccchhhhhhhccccc
Confidence            99997 899999999999999998873         12223222 56677789999999999999999986

>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH

Probab=99.68  E-value=3.1e-17  Score=121.94  Aligned_cols=63  Identities=30%  Similarity=0.458  Sum_probs=49.3

Q ss_pred             ChhHHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC--CeeeeecCCCC
Q 023374           72 SPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG--KRFSYKSKHDL  136 (283)
Q Consensus        72 ~~v~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~--~~f~yKP~y~I  136 (283)
                      ++.++||++||+|||++++|+|++||+++|++|++  +.+++.|++||||+||+  ++|+|||+|+|
T Consensus         1 ~~~~tql~~~VeymK~r~~Plt~~eI~d~l~~d~~--~~~~~~Lk~npKI~~d~~~~~f~fkp~ynI   65 (65)
T PF02186_consen    1 SHKFTQLAKAVEYMKKRDHPLTLEEILDYLSLDIG--KKLKQWLKNNPKIEYDPDGNTFSFKPKYNI   65 (65)
T ss_dssp             -TTHHHHHHHHHHHHHH-S-B-HHHHHHHHTSSS---HHHHHHHHH-TTEEEE-TT-CEEE--TTT-
T ss_pred             CchhhHHHHHHHHHHhcCCCcCHHHHHHHHcCCCC--HHHHHHHHcCCCEEEecCCCEEEeccCCCC
Confidence            35789999999999999999999999999998885  58999999999999994  49999999997

In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.

>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

Probab=99.60  E-value=1.2e-15  Score=116.51  Aligned_cols=70  Identities=23%  Similarity=0.370  Sum_probs=59.9

Q ss_pred             ccCCChhHHHHHHHHHHHhccC-CCCCHHHHhhhhC-CCCCCcH-HHH--HhhhCCCceEEeCCeeeeecCCCCC
Q 023374           68 SIRKSPVGAQIKRVIDRLLETR-QAFTPEEINRDCY-VDVNANK-AVF--DSLRNNPKVHYDGKRFSYKSKHDLK  137 (283)
Q Consensus        68 t~~~~~v~tqi~~vvd~Lk~~~-~plt~~eI~~~~~-~di~~~~-~l~--e~L~~npKI~~d~~~f~yKP~y~Ik  137 (283)
                      +|+|.++.+||++||+|||++. .|+|++||+++|+ +|+.... +|+  +++.+||++....|+|+|||+|+||
T Consensus         1 tg~g~~~~t~l~~aV~ymK~r~~~Plt~~EIl~~ls~~d~~~~~~~~L~~~~~~~n~~~~~~~~tf~fkP~y~Ir   75 (75)
T cd07977           1 TGSGTHVFTQLAKIVDYMKKRHQHPLTLDEILDYLSLLDIGPKLKEWLKSEALVNNPKIDPKDGTFSFKPKYNIR   75 (75)
T ss_pred             CCCCcchhhhHHHHHHHHHhcCCCCccHHHHHHHHhccCccHHHHHHHHhhhhccCceeccCCCEEEeccCCCCC
Confidence            5889999999999999999999 9999999999999 9988653 344  3566666666667899999999996

Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional

>PHA02943 hypothetical protein; Provisional

Probab=93.22  E-value=0.11  Score=45.05  Aligned_cols=72  Identities=13%  Similarity=0.046  Sum_probs=56.0

Q ss_pred             CHHHHHHHHhhCCCCeehhhHhh----hhhcHHHHHHHHHHcCcEEEEecCCCCceeEecCCCCCCCCCCHHHHHHhhhc
Q 023374          138 DKSQLLVLVRKFPEGIAVIDLKD----SYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDI  213 (283)
Q Consensus       138 ~k~~LL~lL~k~~~Gi~v~dLkD----~~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~~~~~~VD~efk~lW~~v  213 (283)
                      -+++.|++|  ..|+.+..++.+    ||-.+.-.|.-||.+|.|.-++.  |...+.+.||..+..-|++=|+++|+=|
T Consensus        12 R~~eILE~L--k~G~~TtseIAkaLGlS~~qa~~~LyvLErEG~VkrV~~--G~~tyw~l~~day~~~v~~~~Relwrlv   87 (165)
T PHA02943         12 RMIKTLRLL--ADGCKTTSRIANKLGVSHSMARNALYQLAKEGMVLKVEI--GRAAIWCLDEDAYTNLVFEIKRELWRLV   87 (165)
T ss_pred             HHHHHHHHH--hcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEEEee--cceEEEEEChHHHHHHHHHHHHHHHHHH
Confidence            367889999  556666665544    68889999999999999988763  6666666677666667999999999865

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=89.94  E-value=0.64  Score=36.61  Aligned_cols=43  Identities=21%  Similarity=0.405  Sum_probs=35.7

Q ss_pred             HHHHHHHHhhC---CCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEE
Q 023374          139 KSQLLVLVRKF---PEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLL  181 (283)
Q Consensus       139 k~~LL~lL~k~---~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl  181 (283)
                      .+.+|++|+..   ..||.|++|....    ..+.++|+.|..+|.||-.
T Consensus        49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT   98 (102)
T PF08784_consen   49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYST   98 (102)
T ss_dssp             HHHHHHHHHC----TTTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEES
T ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecc
Confidence            57789999983   3899999999887    3478999999999999864

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=87.48  E-value=3.2  Score=35.74  Aligned_cols=90  Identities=17%  Similarity=0.332  Sum_probs=62.6

Q ss_pred             HHHHHHHhccCCCCCHHHHhhhhCCCCCCc--HHHHHhhhCCCceEEe--CCeeeeec---CCCCCCHHHHHHHHhhCCC
Q 023374           79 KRVIDRLLETRQAFTPEEINRDCYVDVNAN--KAVFDSLRNNPKVHYD--GKRFSYKS---KHDLKDKSQLLVLVRKFPE  151 (283)
Q Consensus        79 ~~vvd~Lk~~~~plt~~eI~~~~~~di~~~--~~l~e~L~~npKI~~d--~~~f~yKP---~y~Ik~k~~LL~lL~k~~~  151 (283)
                      ..|++||++.+.|++..||...++-.++..  ...++.|...-+|..-  |..-.|-+   .+.+-+.++|-.+=..   
T Consensus         4 ~~Il~y~~~qNRPys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~e---   80 (169)
T PF07106_consen    4 DAILEYMKEQNRPYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAE---   80 (169)
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHH---
Confidence            468999999999999999988776555543  4688999999999984  44433433   3455567765544322   


Q ss_pred             CeehhhHhhhhhcHHHHHHHHHH
Q 023374          152 GIAVIDLKDSYPTVMEDLQALKA  174 (283)
Q Consensus       152 Gi~v~dLkD~~p~~~~~I~~Le~  174 (283)
                         +.+|++-.......+..|++
T Consensus        81 ---i~~L~~el~~l~~~~k~l~~  100 (169)
T PF07106_consen   81 ---IKELREELAELKKEVKSLEA  100 (169)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH
Confidence               56666666666666666643

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=86.99  E-value=0.38  Score=35.50  Aligned_cols=46  Identities=13%  Similarity=0.244  Sum_probs=40.0

Q ss_pred             HHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC
Q 023374           80 RVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG  125 (283)
Q Consensus        80 ~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~  125 (283)
                      .|++||++.+.|++-.||.+.|++++..-..+++.|..--+|+-.+
T Consensus         4 ~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~~   49 (62)
T PF04703_consen    4 KILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGKVERSP   49 (62)
T ss_dssp             CHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEES
T ss_pred             HHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec
Confidence            4899999999999999999999999998888999999999998754

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=84.24  E-value=3.2  Score=30.59  Aligned_cols=53  Identities=11%  Similarity=0.152  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhCCCCeehhhHhhhhh----cHHHHHHHHHHcCcEEEEecCCCCceeEe
Q 023374          139 KSQLLVLVRKFPEGIAVIDLKDSYP----TVMEDLQALKAAGQIWLLSNFDSQEDIAY  192 (283)
Q Consensus       139 k~~LL~lL~k~~~Gi~v~dLkD~~p----~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf  192 (283)
                      |+++|++|+.+.++++-.|+.|+.-    .+-..|..|+.+|.|--....-|.. .+|
T Consensus         2 ke~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~~~~rG~~-~~W   58 (62)
T PF04703_consen    2 KEKILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGKVERSPVRRGKS-TYW   58 (62)
T ss_dssp             HHCHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEES-SSSSS--EE
T ss_pred             cHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCCCcc-eee
Confidence            6789999999999999999999765    4678899999999997775444554 455

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=84.19  E-value=0.75  Score=31.91  Aligned_cols=49  Identities=20%  Similarity=0.248  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC
Q 023374           77 QIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG  125 (283)
Q Consensus        77 qi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~  125 (283)
                      ....|+++|.....++++.||.+.++++-+.-..++..|...--|+.||
T Consensus         4 ral~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~dp   52 (52)
T PF09339_consen    4 RALRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERDP   52 (52)
T ss_dssp             HHHHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEECS
T ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecCc
Confidence            3467899999999999999999999998887777888887776666554

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=82.27  E-value=3.5  Score=34.65  Aligned_cols=83  Identities=18%  Similarity=0.258  Sum_probs=56.5

Q ss_pred             HHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhh-----hCCCceEEeCC--eeeeecCCCCCCHHHHHHHHhhCCCCe
Q 023374           81 VIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSL-----RNNPKVHYDGK--RFSYKSKHDLKDKSQLLVLVRKFPEGI  153 (283)
Q Consensus        81 vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L-----~~npKI~~d~~--~f~yKP~y~Ik~k~~LL~lL~k~~~Gi  153 (283)
                      |.-.|.+.+.|+|.+||.+.++.+-+.-..-+..|     ..-.++.+++|  .|.|+|..    .+++-..+       
T Consensus        32 v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~----~ee~k~~i-------  100 (126)
T COG3355          32 VYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPID----PEEIKKKI-------  100 (126)
T ss_pred             HHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeeccCCCceeEEEecCC----HHHHHHHH-------
Confidence            34445558899999999998988887655433333     23455556666  67777755    66665444       


Q ss_pred             ehhhHhhhhhcHHHHHHHHHHc
Q 023374          154 AVIDLKDSYPTVMEDLQALKAA  175 (283)
Q Consensus       154 ~v~dLkD~~p~~~~~I~~Le~~  175 (283)
                       .++|.+.|-.+...|++.+..
T Consensus       101 -~~~l~~w~~~~~~~i~~~~~~  121 (126)
T COG3355         101 -LKDLDEWYDKMKQLIEEFEKK  121 (126)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcc
Confidence             457888888888888887543

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.25  E-value=6.6  Score=33.76  Aligned_cols=96  Identities=19%  Similarity=0.325  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhCCCCeehhhHhhhhhc------HHHHHHHHHHcCcEEEEecCCCCceeEecCCCCCCCC-------CCHH
Q 023374          139 KSQLLVLVRKFPEGIAVIDLKDSYPT------VMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIK-------ADDD  205 (283)
Q Consensus       139 k~~LL~lL~k~~~Gi~v~dLkD~~p~------~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~~~~~~-------VD~e  205 (283)
                      .+.+|.||+++..-.++-||-+..-+      |...|+.|.++|+|.+-.-  |+-+|.|+|...+...       +|.+
T Consensus         3 e~~Il~y~~~qNRPys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~--GKqkiY~~~Q~~~~~~s~eel~~ld~e   80 (169)
T PF07106_consen    3 EDAILEYMKEQNRPYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEY--GKQKIYFANQDELEVPSPEELAELDAE   80 (169)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeee--cceEEEeeCccccCCCCchhHHHHHHH
Confidence            35789999998877777777776644      6889999999999988753  7778999997665432       3334


Q ss_pred             HHHHhhhcC-CCCChhHHHHHHHHCCCCCccc
Q 023374          206 LKLLFRDIA-LPSDMLDIEKDLQKNGMKPATN  236 (283)
Q Consensus       206 fk~lW~~v~-vP~d~~Di~k~L~~~Glkp~~~  236 (283)
                      +..|=..+. +-.+...+..+|....-.|+.+
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~  112 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNE  112 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            333332221 1112223555555555555543

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
1d8j_A	81	General transcription factor TFIIE-beta; winged he	99.54
2dk8_A	81	DNA-directed RNA polymerase III 39 kDa polypeptide	95.02
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	85.12
2vxz_A	165	Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py	84.91
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	82.48

>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A

Probab=99.54  E-value=8.6e-15  Score=111.62  Aligned_cols=67  Identities=16%  Similarity=0.352  Sum_probs=57.3

Q ss_pred             CChhHHHHHHHHHHHhc-----cCCCCCHHHHhhhhC-CCCCCcH-H-H-HHhhhCCCceEEeCCeeeeecCCCCC
Q 023374           71 KSPVGAQIKRVIDRLLE-----TRQAFTPEEINRDCY-VDVNANK-A-V-FDSLRNNPKVHYDGKRFSYKSKHDLK  137 (283)
Q Consensus        71 ~~~v~tqi~~vvd~Lk~-----~~~plt~~eI~~~~~-~di~~~~-~-l-~e~L~~npKI~~d~~~f~yKP~y~Ik  137 (283)
                      ...-.+||.+||+|||+     .+.|+|++||+++|+ .|++... . | .|+|++||||+|.+++|+|||+|+||
T Consensus         6 s~~~f~~lakiV~~mK~rh~~g~~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI~~~dgkf~fkP~y~ik   81 (81)
T 1d8j_A            6 SGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNVR   81 (81)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEECSSSEEECCTTTCC
T ss_pred             cccceehHHHHHHHHHHhhccCCCCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCceEEeCCceeccCCcCcC
Confidence            33467899999999998     789999999988874 7777663 3 4 49999999999998899999999986

>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85

Probab=95.02  E-value=0.044  Score=41.51  Aligned_cols=46  Identities=24%  Similarity=0.462  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhCCCCeehhhHhhhhhcH-----HHHHHHHHHcCcEEEEecC
Q 023374          139 KSQLLVLVRKFPEGIAVIDLKDSYPTV-----MEDLQALKAAGQIWLLSNF  184 (283)
Q Consensus       139 k~~LL~lL~k~~~Gi~v~dLkD~~p~~-----~~~I~~Le~~g~Ilvl~~k  184 (283)
                      .+.+|++++.+|.||+-+||....|++     ...|+.|-.+|+|-++.+.
T Consensus        16 e~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~   66 (81)
T 2dk8_A           16 ENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSN   66 (81)
T ss_dssp             HHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECS
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence            456999999999999999999999994     7889999999999999764

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B

Probab=85.12  E-value=12  Score=32.73  Aligned_cols=110  Identities=10%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             hhHHHHHHHH-HHHhccCCCCCHHHHhhhh----CCCCCCcHHHHHhhhCCCc----eEE---eCCee-eeecCCCC-CC
Q 023374           73 PVGAQIKRVI-DRLLETRQAFTPEEINRDC----YVDVNANKAVFDSLRNNPK----VHY---DGKRF-SYKSKHDL-KD  138 (283)
Q Consensus        73 ~v~tqi~~vv-d~Lk~~~~plt~~eI~~~~----~~di~~~~~l~e~L~~npK----I~~---d~~~f-~yKP~y~I-k~  138 (283)
                      .++-||..++ ..+.+.+.=+++.|+....    |.++-...+++.+...-+.    +..   ..|.+ .--+.+.. .+
T Consensus        76 ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~  155 (218)
T 3cuq_B           76 QLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEM  155 (218)
T ss_dssp             HHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGG
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHHH
Confidence            3566665553 3344457779999985544    4554444455544333211    333   44554 33335555 67


Q ss_pred             HHHHHHHHhhCCCCeehhhHhh--hhhc--HHHHHHHHHHcCcEEEEec
Q 023374          139 KSQLLVLVRKFPEGIAVIDLKD--SYPT--VMEDLQALKAAGQIWLLSN  183 (283)
Q Consensus       139 k~~LL~lL~k~~~Gi~v~dLkD--~~p~--~~~~I~~Le~~g~Ilvl~~  183 (283)
                      ...+|++++. .+|+++.+|.+  +|+-  +.+.|+.++++|-+|+=..
T Consensus       156 ~~~il~~~~~-~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~  203 (218)
T 3cuq_B          156 VASALETVSE-KGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDS  203 (218)
T ss_dssp             HHHHHHHHHH-TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred             HHHHHHHHHH-CCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            7888888874 47999999887  6776  6889999999999998653

>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}

Probab=84.91  E-value=0.44  Score=40.15  Aligned_cols=70  Identities=11%  Similarity=0.010  Sum_probs=51.4

Q ss_pred             HHHHHHHHhhCCCCeehh----hHhhhhhcHHHHHHHHHHcCcEEEEecCCCCceeEecCCCCCCCCCCHHHHHHhhh
Q 023374          139 KSQLLVLVRKFPEGIAVI----DLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRD  212 (283)
Q Consensus       139 k~~LL~lL~k~~~Gi~v~----dLkD~~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~~~~~~VD~efk~lW~~  212 (283)
                      +.++|++|+  .|.+++.    .|-=||..+.-.|.-|+.+|-|.-+..  |+.+++-.++..+...|++-|+++|+-
T Consensus        13 k~~ILE~Lk--~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~--GK~ayw~L~~s~y~~kV~dilrel~~~   86 (165)
T 2vxz_A           13 LRDILALLA--DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAF--GNVALVCLSMDQYRQLVDGMIREVERL   86 (165)
T ss_dssp             HHHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEE--TTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEE--ccEEEEEecHHHHHHHHHHHHHHHHHH
Confidence            578999999  7777764    455689999999999999999988864  555555455444444677777777764

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=82.48  E-value=4.2  Score=29.14  Aligned_cols=57  Identities=12%  Similarity=0.104  Sum_probs=41.4

Q ss_pred             HHHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCCceeEecCCC
Q 023374          139 KSQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDP  196 (283)
Q Consensus       139 k~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~  196 (283)
                      ...+|.+|... +++++.||.+.    -+.+-..|+.|+++|-|.......|....+..++.
T Consensus         2 r~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~   62 (81)
T 2htj_A            2 KNEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE   62 (81)
T ss_dssp             HHHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence            46788999765 56888888875    45678999999999988766555555544445544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1d8ja_	81	The central core domain of TFIIE beta {Human (Homo	99.51
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	92.53
d2dk8a1	68	DNA-directed RNA polymerase III subunit RPC6, RPO3	92.32
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	87.05
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	82.29

>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: The central core domain of TFIIE beta
domain: The central core domain of TFIIE beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.1e-15  Score=108.27  Aligned_cols=63  Identities=17%  Similarity=0.391  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHhcc-----CCCCCHHHHhhhh-CCCCCCcHH-HH--HhhhCCCceEEeCCeeeeecCCCCC
Q 023374           75 GAQIKRVIDRLLET-----RQAFTPEEINRDC-YVDVNANKA-VF--DSLRNNPKVHYDGKRFSYKSKHDLK  137 (283)
Q Consensus        75 ~tqi~~vvd~Lk~~-----~~plt~~eI~~~~-~~di~~~~~-l~--e~L~~npKI~~d~~~f~yKP~y~Ik  137 (283)
                      ...|.+||+|||.+     .+|||++||++++ .+||+.... |+  |+|.|||||++.+|+|.|||+|+||
T Consensus        10 FgvLaKIV~~MK~RHq~g~~hPLtLeEiLDEt~~~Di~~~~k~WL~~EAL~nNPKi~v~dgKf~Fkp~Y~ik   81 (81)
T d1d8ja_          10 FGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNVR   81 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEECSSSEEECCTTTCC
T ss_pred             chHHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhccccHHHHHHHHhhhcccCCceeecCCeeeecCCcccC
Confidence            44588999999986     6899999997666 699997764 44  9999999999998999999999986

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.11  Score=36.42  Aligned_cols=43  Identities=28%  Similarity=0.516  Sum_probs=36.7

Q ss_pred             HHHHHHHhhCC--CCeehhhHhhhhhc-----HHHHHHHHHHcCcEEEEe
Q 023374          140 SQLLVLVRKFP--EGIAVIDLKDSYPT-----VMEDLQALKAAGQIWLLS  182 (283)
Q Consensus       140 ~~LL~lL~k~~--~Gi~v~dLkD~~p~-----~~~~I~~Le~~g~Ilvl~  182 (283)
                      ..+|++|+.++  +||.+.+|+...++     +.++|+.|..+|-||-..
T Consensus         9 ~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IYsTi   58 (69)
T d1dpua_           9 NQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTV   58 (69)
T ss_dssp             HHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEEECS
T ss_pred             HHHHHHHHhCCCccCcCHHHHHHHccCCCHHHHHHHHHHHHhCCceeccc
Confidence            56899999876  89999999988764     689999999999999543

>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: RPO3F domain-like
domain: DNA-directed RNA polymerase III subunit RPC6, RPO3F
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.32  E-value=0.14  Score=35.73  Aligned_cols=46  Identities=24%  Similarity=0.462  Sum_probs=41.5

Q ss_pred             HHHHHHHHhhCCCCeehhhHhhhhhcH-----HHHHHHHHHcCcEEEEecC
Q 023374          139 KSQLLVLVRKFPEGIAVIDLKDSYPTV-----MEDLQALKAAGQIWLLSNF  184 (283)
Q Consensus       139 k~~LL~lL~k~~~Gi~v~dLkD~~p~~-----~~~I~~Le~~g~Ilvl~~k  184 (283)
                      ...+|++.+.+|+||+-+||....|++     ..+|+.|-..|.|-+++..
T Consensus         9 e~~Ilel~k~~P~GitD~dl~~a~p~v~~~qRv~aiN~LLs~g~idllK~g   59 (68)
T d2dk8a1           9 ENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSN   59 (68)
T ss_dssp             HHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECS
T ss_pred             HHHHHHHHHhCCCCCChHHHHHHCcCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence            457899999999999999999999997     6789999999999999853

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.05  E-value=0.3  Score=33.82  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC-Ceeeee
Q 023374           77 QIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG-KRFSYK  131 (283)
Q Consensus        77 qi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~-~~f~yK  131 (283)
                      ....|++++-..+.|+++.||.+.++++-+.-..++..|..+--|+.++ ++|.--
T Consensus         6 r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG   61 (75)
T d1mkma1           6 KAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPG   61 (75)
T ss_dssp             HHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCCEeec
Confidence            4567899999999999999999999998888788999999999999975 455433

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=82.29  E-value=0.5  Score=34.38  Aligned_cols=75  Identities=19%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-C--CCceeEecCCCCCCCCCCHHHHHHhhhc
Q 023374          141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-D--SQEDIAYPNDPRVPIKADDDLKLLFRDI  213 (283)
Q Consensus       141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d--~~~~ivf~ND~~~~~~VD~efk~lW~~v  213 (283)
                      .+|..|-+.++++++.||.+..    +.+-..|+.|++.|-|.-..+. |  |.+..+|.......-.+.++|.++++.+
T Consensus        25 ~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~~~d~rg~~~~~~~~~~~~~~~i~~~~~~~~~k~  104 (109)
T d2d1ha1          25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLLNCAKRM  104 (109)
T ss_dssp             HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHCccHhHHHHHHHHHHHCCCEEEeecCCCCCceeEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence            3555555556789999988754    6688999999999998766554 3  3444555555555556788888888887


Q ss_pred             CC
Q 023374          214 AL  215 (283)
Q Consensus       214 ~v  215 (283)
                      .+
T Consensus       105 ~~  106 (109)
T d2d1ha1         105 EL  106 (109)
T ss_dssp             HT
T ss_pred             HH
Confidence            65