Citrus Sinensis ID: 023375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MFLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI
Secondary Structure (PSIPRED)
cccccccHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccEEEcccEEEEEccEEEEccccEEccccEEEccccccccccccccccccccccEEEcccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccEEEEcccccEEEcccccccccEEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEcEEEEEccccEEEccccEEcccEEEEEccccccHHHHHcccccccccEEEEcccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccEEEEccccEEEEccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MFLAGISEEEKSRLLHCVVvgggptgvefsgELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGivkdvdsqklilndgtevpyGLLVWstgvgpstlvksldlpkspggrigidewlrvpsvqdvfavgdcsgylestgktvLPALAQVAERQGKYLFSLLNRIgkagggransakdmelgdpfvyrhlgsmatIGRYKALVDLRQnkeskglslaGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVfgrdisri
Flexible Loop (DISEMBL)
MFLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAttqlsksgvrlvRGIVkdvdsqklilndgtevpYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAgggransakdmELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWattfvfgrdisri
Low Complexity Region (SEG)
MFLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI
Disordered region (IsUnstruct)
************RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGG*******MELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRD****
Disordered Region (DISOPRED)
MFLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD*LR*YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAG***********LGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI
Disordered Region (DISEMBL)
MFLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI
Disordered Region (DISPRO)
MFLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGG********MELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q8GWA1	510	Alternative NAD(P)H dehyd	yes	no	0.992	0.550	0.836	1e-133
O80874	508	Alternative NAD(P)H dehyd	no	no	0.985	0.549	0.827	1e-130
O43090	551	Probable NADH-ubiquinone	yes	no	0.954	0.490	0.365	8e-46
Q55CD9	451	Probable NADH dehydrogena	yes	no	0.918	0.576	0.375	5e-44
O14121	551	Probable NADH-ubiquinone	no	no	0.957	0.491	0.338	7e-41
F2Z699	582	External alternative NADH	yes	no	0.943	0.458	0.361	5e-31
P40215	560	External NADH-ubiquinone	yes	no	0.929	0.469	0.359	6e-29
Q1JPL4	571	NAD(P)H dehydrogenase B1,	no	no	0.551	0.273	0.387	1e-28
Q07500	545	External NADH-ubiquinone	no	no	0.946	0.491	0.350	2e-28
P32340	513	Rotenone-insensitive NADH	no	no	0.936	0.516	0.293	7e-24

>sp|Q8GWA1|NDA1_ARATH Alternative NAD(P)H dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1

 Score =  473 bits (1218), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/281 (83%), Positives = 260/281 (92%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + GI E+EK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRYSHVKD I VTLIEA +I
Sbjct: 230 VPGIGEDEKKRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIRVTLIEARDI 289

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFDDRLRHYA  QL+KSGV+LVRGIVK+V  QKLIL+DGTEVPYG LVWSTGVGPS+ 
Sbjct: 290 LSSFDDRLRHYAIKQLNKSGVKLVRGIVKEVKPQKLILDDGTEVPYGPLVWSTGVGPSSF 349

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           V+SLD PK PGGRIGIDEW+RVPSVQDVFA+GDCSGYLESTGK+ LPALAQVAER+GKYL
Sbjct: 350 VRSLDFPKDPGGRIGIDEWMRVPSVQDVFAIGDCSGYLESTGKSTLPALAQVAEREGKYL 409

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
            +L N +GKAGGGRANSAK+MELG+PFVY+HLGSMATIGRYKALVDLR++KE KG+S+AG
Sbjct: 410 ANLFNVMGKAGGGRANSAKEMELGEPFVYKHLGSMATIGRYKALVDLRESKEGKGISMAG 469

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           FLSW +WRSAYLTRVVSWRNRFYVA+NW TTFVFGRDISRI
Sbjct: 470 FLSWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGRDISRI 510

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: -EC: .EC: -

>sp|O80874|NDA2_ARATH Alternative NAD(P)H dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=1 SV=1

 Score =  464 bits (1193), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/279 (82%), Positives = 256/279 (91%)

Query: 5   GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS 64
           GIS+EEK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILS
Sbjct: 230 GISKEEKRRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILS 289

Query: 65  SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK 124
           SFDDRLR YA  QL+KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS  V+
Sbjct: 290 SFDDRLRRYAIKQLNKSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVR 349

Query: 125 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 184
           SL LPK P GRIGIDEW+RVPSVQDVFA+GDCSGYLE+TGK  LPALAQVAER+GKYL +
Sbjct: 350 SLGLPKDPTGRIGIDEWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVAEREGKYLAN 409

Query: 185 LLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFL 244
           LLN IGK  GGRANSAK++ELG PFVY+HLGSMATIGRYKALVDLR++K++KG+S+ GF+
Sbjct: 410 LLNAIGKGNGGRANSAKEIELGVPFVYKHLGSMATIGRYKALVDLRESKDAKGISMTGFV 469

Query: 245 SWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           SW +WRSAYLTRV+SWRNRFYVA+NW TTFVFGRDISRI
Sbjct: 470 SWFIWRSAYLTRVISWRNRFYVAINWFTTFVFGRDISRI 508

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|O43090|NDH2_SCHPO Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.15c PE=3 SV=1

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 168/312 (53%), Gaps = 42/312 (13%)

Query: 2   FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61
           F   +S EE++RLLH  VVGGGPTG+EF+ E+ DFI  DV+  +  ++  IHVTLIEA  
Sbjct: 242 FNKDLSPEERARLLHITVVGGGPTGMEFAAEMQDFIDNDVKDMFPELQKDIHVTLIEAAP 301

Query: 62  -ILSSFDDRLRHYATTQLSKSGVRLV-RGIVKDVDSQKLILN----DGT----EVPYGLL 111
            +L  F   L  Y         ++++ + +VKDV+ + LI+     DG+    E+PYG+L
Sbjct: 302 GVLPMFTKSLITYTENLFKNLNIKIMTKTVVKDVNEKNLIVQKTNPDGSKAMQEIPYGML 361

Query: 112 VWSTGVGPSTLVKSL--DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTV 167
           VW+ G+    L ++L   +P+  G R G  +DE+ RV  V +++AVGDC+        + 
Sbjct: 362 VWAAGITARPLTRTLMSSIPEQSGARKGLIVDEFFRVKGVPEMYAVGDCAF-------SG 414

Query: 168 LPALAQVAERQGKYLFSLLNRIGKAGGGRAN-SAKDMELG-------------------- 206
           LPA AQVA +QG +L   LN  GK         A + +LG                    
Sbjct: 415 LPATAQVANQQGAWLAKNLNVEGKKFALHERIQALEKQLGEKEAPSQVAGLKQQVEQLKL 474

Query: 207 DPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYV 266
           +PF Y H G++A +G  KA+ DL+     K L L G +    WR AYL  ++S R++F V
Sbjct: 475 EPFKYHHQGALAYVGDEKAIADLKLPFMKKMLPLQGIVGHTFWRLAYLNELISARSQFMV 534

Query: 267 AVNWATTFVFGR 278
            ++W  T +FGR
Sbjct: 535 LIDWLKTRLFGR 546

Catalyzes the oxidation of NADH.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2

 Score =  178 bits (451), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/282 (37%), Positives = 159/282 (56%), Gaps = 22/282 (7%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK-DYIHVTLIEAN- 60
           L  +S EE+ RLL  V+VGGG TG+EF+ EL+DF   D+ + +  V  + + + L+EA+ 
Sbjct: 187 LPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSEDLSRLFPFVPVNEVKIILLEASG 246

Query: 61  EILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 119
           +ILS+FD +L   A      SG+ +     VK+V    +IL++G  +PYGLLVWSTG+G 
Sbjct: 247 KILSTFDQKLVKKALINFRNSGIDVRTHSSVKEVLKDYVILDNGDRIPYGLLVWSTGIGQ 306

Query: 120 STLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 179
             LVK+    K    RI +D+ LRV +  +VF+ GDC+  +E+      P  AQVA +  
Sbjct: 307 HPLVKNSSFEKDSHDRIIVDDHLRVKNYSNVFSFGDCAN-VENKN---YPPTAQVASQSA 362

Query: 180 KYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLS 239
            YL    N + K      N  K      PF ++ LG +A  G+   ++      ++    
Sbjct: 363 VYLAKEFNNLEKLN---PNPPK------PFAFKFLGLLAYTGKKSGIL------QTDFFD 407

Query: 240 LAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDIS 281
           L+GF+ ++ WRSAYLTR+ S R++  V  +W  T +FGRDIS
Sbjct: 408 LSGFIGFITWRSAYLTRLGSLRSKIQVPFDWMRTLIFGRDIS 449

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|O14121|NDH1_SCHPO Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.07 PE=3 SV=1

 Score =  167 bits (424), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 162/313 (51%), Gaps = 42/313 (13%)

Query: 6   ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILS 64
           +  E + R +H VVVGGGPTG+EF+GE++DFI  D++  Y  + D   VTL+EA   +L 
Sbjct: 246 LPAETRRRYVHTVVVGGGPTGMEFAGEMADFIEDDLKSWYPELADDFAVTLVEALPSVLP 305

Query: 65  SFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILN----DGTE----VPYGLLVWST 115
            F  +LR Y  +    S +++     +K V ++ + +     DG++    +PYGLLVW+ 
Sbjct: 306 MFSAKLRDYTQSLFDSSHIKIRTNTALKKVTAENIHVEVKNPDGSKQEEVIPYGLLVWAG 365

Query: 116 GVGPSTLVKSL-DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALA 172
           G     L K L +  +    R G  +DE+L++   +D+FA+GDC+        T     A
Sbjct: 366 GNRARPLTKKLMEGSEEQNNRRGLVVDEYLKLKGYKDIFALGDCT-------HTAYAPTA 418

Query: 173 QVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGD----------------------PFV 210
           QVA +QG YL  L N++G     + +  + + LGD                      PF 
Sbjct: 419 QVASQQGAYLGQLFNKLGSLNFEKPSEDRHIALGDEMDSSTLISLANEKHASTKVFLPFK 478

Query: 211 YRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNW 270
           Y H GS+A +G  KA+ D+      K L  +G L++  WRS YL+ + S RNR  V ++W
Sbjct: 479 YSHQGSLAYVGHEKAIADIEVPWFGKQLHASGALAFYFWRSVYLSELYSLRNRTNVTLDW 538

Query: 271 ATTFVFGRDISRI 283
               +FGRDIS +
Sbjct: 539 IRVKLFGRDISSL 551

Catalyzes the oxidation of NADH.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|F2Z699|NDH2_YARLI External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1

 Score =  134 bits (338), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 155/318 (48%), Gaps = 51/318 (16%)

Query: 9   EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFD 67
           E + RLLH VVVGGGPTGVEF+ EL DF   D+R+    ++D   VTL+EA   +L SF 
Sbjct: 271 EVRKRLLHTVVVGGGPTGVEFAAELQDFFEDDLRKWIPDIRDDFKVTLVEALPNVLPSFS 330

Query: 68  DRLRHYATTQLSKSGVR-LVRGIVKDVDSQ----KLILNDGT----EVPYGLLVWSTGVG 118
            +L  Y     S   +  L + +VK VD      +    DGT    E+PYG LVW+TG  
Sbjct: 331 KKLIDYTEKTFSDEKISILTKTMVKSVDENVIRAEQTKGDGTKETLEMPYGTLVWATGNT 390

Query: 119 PSTLVKSL--DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
              +V+ L   +P   G R G  ++E+L V   + ++A+GDCS        T     AQV
Sbjct: 391 VRPVVRELMSKIPAQKGSRRGLLVNEYLVVEGTEGIWALGDCSA-------TKYAPTAQV 443

Query: 175 AERQGKYLFSLLNRIGKAGG-------------------GRANSAKDMELGD-------- 207
           A ++G YL +LLN I K                       R N    +E           
Sbjct: 444 ASQEGSYLANLLNGIAKTEDLNNEITNLEKQSEHTFDEQERKNIFAQLESKSRKLRRSRA 503

Query: 208 --PFVYRHLGSMATIGRYKALVDLRQNKES-KGLSLAGFLSWLVWRSAYLTRVVSWRNRF 264
             PF Y H GS+A IG  +A+ DL  N       S  G +++  WRSAY++   S RN+ 
Sbjct: 504 MLPFEYSHQGSLAYIGSDRAVADLSFNFWGIMNWSSGGTMTYYFWRSAYVSMCFSMRNKI 563

Query: 265 YVAVNWATTFVFGRDISR 282
            V ++W    VFGRDISR
Sbjct: 564 LVCIDWMKVRVFGRDISR 581

Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons accross the inner mitochondrial membrane.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 9

>sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1

 Score =  128 bits (321), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 161/303 (53%), Gaps = 40/303 (13%)

Query: 8   EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSF 66
           + E++RLL  VVVGGGPTGVEF+ EL D++ +D+R+    +   I VTL+EA   IL+ F
Sbjct: 268 DPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPELSKEIKVTLVEALPNILNMF 327

Query: 67  DDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDG----TEVPYGLLVWSTGVGPST 121
           D  L  YA     +  + L ++ +VK VD+  +    G      +PYG+LVW+TG  P  
Sbjct: 328 DKYLVDYAQDLFKEEKIDLRLKTMVKKVDATTITAKTGDGDIENIPYGVLVWATGNAPRE 387

Query: 122 LVKSL--DLPKSPGGR-IGIDEWLRVPSVQ-DVFAVGDCSGYLESTGKTVLPAL---AQV 174
           + K+L   L +    R + ID  L++   +  +FA+GDC         T  P L   AQV
Sbjct: 388 VSKNLMTKLEEQDSRRGLLIDNKLQLLGAKGSIFAIGDC---------TFHPGLFPTAQV 438

Query: 175 AERQGKYL---FSLLNRIGKAGGGRANSAKDMELG-------------DPFVYRHLGSMA 218
           A ++G+YL   F    +I +      ++  D E+              + F Y H G++A
Sbjct: 439 AHQEGEYLAQYFKKAYKIDQLNWKMTHAKDDSEVARLKNQIVKTQSQIEDFKYNHKGALA 498

Query: 219 TIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGR 278
            IG  KA+ DL    E+K   LAG  ++L W+SAYL   +S+RNR  VA++WA  +  GR
Sbjct: 499 YIGSDKAIADLAVG-EAK-YRLAGSFTFLFWKSAYLAMCLSFRNRVLVAMDWAKVYFLGR 556

Query: 279 DIS 281
           D S
Sbjct: 557 DSS 559

External NADH dehydrogenase required for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. With NDE2, performes the mitochondrial oxidation of cytosolic NADH under these growth conditions. Regulates the mitochondrial glycerol-3-phosphate dehydrogenase, GUT2, also involved in cytosolic NADH oxydation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 105/165 (63%), Gaps = 9/165 (5%)

Query: 2   FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-N 60
            L G++EE++ R LH V+VGGGPTGVEF+ EL DFI+ D+ + Y  VK+ + +TLI++ +
Sbjct: 202 ILPGLTEEQRRRKLHFVIVGGGPTGVEFAAELHDFIIEDITKIYPSVKELVKITLIQSGD 261

Query: 61  EILSSFDDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLILNDG--TEVPYGLLVWS 114
            IL++FD+R+  +A  + ++ G+ +  G+    V D D    + + G    +P+GL++WS
Sbjct: 262 HILNTFDERISSFAEQKFTRDGIDVQTGMRVMSVTDKDITVKVKSSGELVSIPHGLILWS 321

Query: 115 TGVGPSTLVKSLDLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCS 157
           TGVG   ++         GGR  +  +EWL+V   ++V+AVGDC+
Sbjct: 322 TGVGTRPVISDFMEQVGQGGRRAVATNEWLQVTGCENVYAVGDCA 366

Calcium-dependent NAD(P)H dehydrogenase. Binds calcium ions.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q07500|NDH2_YEAST External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE2 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 162/302 (53%), Gaps = 34/302 (11%)

Query: 6   ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILS 64
           +++ E+ RLL  VVVGGGPTGVEF+ EL D+I +D+R+    +   + V LIEA   IL+
Sbjct: 251 VNDPERKRLLTFVVVGGGPTGVEFAAELQDYINQDLRKWMPDLSKEMKVILIEALPNILN 310

Query: 65  SFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKL-ILNDG---TEVPYGLLVWSTGVGP 119
            FD  L  YA    ++  + L V   VK V+   +  L +G   T++ YG+LVW+TG  P
Sbjct: 311 MFDKTLIKYAEDLFARDEIDLQVNTAVKVVEPTYIRTLQNGQTNTDIEYGMLVWATGNEP 370

Query: 120 STLVKSL--DLPKSPGGR-IGIDEWLRVP-SVQDVFAVGDCSGYLESTGKTVLPALAQVA 175
               K+L   +P+    R + I++ L +  S   ++A+GDC+ +   TG    P  AQVA
Sbjct: 371 IDFSKTLMSRIPEQTNRRGLLINDKLELLGSENSIYAIGDCTAH---TG--FFPT-AQVA 424

Query: 176 ERQGKYLFSLLNR---IGKAGGGRANSAKDMELG-------------DPFVYRHLGSMAT 219
            ++G+YL  +L++   I +      NS  + E+              D F Y+H+G++A 
Sbjct: 425 HQEGEYLAKILDKKLQIEQLEWDMLNSTDETEVSRLQKEVNLRKSKLDKFNYKHMGALAY 484

Query: 220 IGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRD 279
           IG   A+ DL     S    L G  ++L W+SAYL   +S RNR  +A++W   +  GRD
Sbjct: 485 IGSETAIADLHMGDSS--YQLKGMFAFLFWKSAYLAMCLSIRNRILIAMDWTKVYFLGRD 542

Query: 280 IS 281
            S
Sbjct: 543 SS 544

External NADH dehydrogenase required for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. With NDE1, performes the mitochondrial oxidation of cytosolic NADH under these growth conditions. Regulates the mitochondrial glycerol-3-phosphate dehydrogenase, GUT2, also involved in cytosolic NADH oxydation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P32340|NDI1_YEAST Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDI1 PE=1 SV=1

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 157/296 (53%), Gaps = 31/296 (10%)

Query: 8   EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LSSF 66
           + E+ RLL  VVVGGGPTGVE +GEL D++ +D+R+    + + + + L+EA  I L+ F
Sbjct: 222 DPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMF 281

Query: 67  DDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------VPYGLLVWSTGV 117
           + +L  YA + L  + +++ +R  V  V+ ++L+     E        +PYG L+W+TG 
Sbjct: 282 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 341

Query: 118 GPSTLVKSL--DLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 173
               ++  L   +P+    +  + ++++L+V    ++FA+GD +          LP  AQ
Sbjct: 342 KARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQ 394

Query: 174 VAERQGKYLFSLLNRIGKAGGGRAN--SAKD-----MELGD--PFVYRHLGSMATIGRYK 224
           VA ++ +YL    +++ +    + N  S KD      E  +  PF Y  LG++A +G  +
Sbjct: 395 VAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSER 454

Query: 225 ALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 280
           A+  +R  K +   +  G +++ +WR  YL+ ++S R+R  V  +W     F RD 
Sbjct: 455 AIATIRSGKRT-FYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDF 509

Catalyzes the oxidation of NADH generated inside the Mitochondrion.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
357490831	566	hypothetical protein MTR_5g071250 [Medic	0.982	0.491	0.856	1e-134
449450824	505	PREDICTED: alternative NAD(P)H dehydroge	0.992	0.556	0.850	1e-133
356500874	485	PREDICTED: probable NADH dehydrogenase-l	0.992	0.579	0.836	1e-132
118488127	488	unknown [Populus trichocarpa]	0.992	0.575	0.854	1e-132
225434562	499	PREDICTED: probable NADH dehydrogenase [	0.992	0.563	0.843	1e-132
356553084	485	PREDICTED: probable NADH dehydrogenase-l	0.992	0.579	0.832	1e-132
255560820	546	Rotenone-insensitive NADH-ubiquinone oxi	0.985	0.510	0.810	1e-132
21536893	510	putative NADH dehydrogenase (ubiquinone	0.992	0.550	0.839	1e-132
224104264	452	predicted protein [Populus trichocarpa]	0.992	0.621	0.854	1e-131
385274841	556	type II NAD(P)H dehydrogenase [Arum macu	0.985	0.501	0.802	1e-131

>gi|357490831|ref|XP_003615703.1| hypothetical protein MTR_5g071250 [Medicago truncatula] gi|355517038|gb|AES98661.1| hypothetical protein MTR_5g071250 [Medicago truncatula]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/278 (85%), Positives = 262/278 (94%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + GISEEEK RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY+HVKDYIHVTLIEANEI
Sbjct: 221 VPGISEEEKKRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYAHVKDYIHVTLIEANEI 280

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFDDRLRHYAT QL+KSGVRLVRGIVKDV  +K+ILNDGTEVPYGLLVWSTGVGPS  
Sbjct: 281 LSSFDDRLRHYATNQLTKSGVRLVRGIVKDVQEKKIILNDGTEVPYGLLVWSTGVGPSPF 340

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           + SLDLPKSPGGRIGIDEWLRVPSVQD+F++GDCSG++ESTGK  LPALAQVAERQGKYL
Sbjct: 341 IHSLDLPKSPGGRIGIDEWLRVPSVQDIFSIGDCSGFVESTGKPTLPALAQVAERQGKYL 400

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
            +LLN++G+A GGRANS KD++LG+ FVY+HLGSMAT+G YKALVDLRQNK++KGLSLAG
Sbjct: 401 AALLNKVGEANGGRANSMKDIDLGNQFVYKHLGSMATVGSYKALVDLRQNKDAKGLSLAG 460

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 280
           FLSW VWRSAYLTRV+SWRNRFYVA+NWATTFVFGRDI
Sbjct: 461 FLSWFVWRSAYLTRVISWRNRFYVAINWATTFVFGRDI 498

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450824|ref|XP_004143162.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus] gi|449523139|ref|XP_004168582.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/281 (85%), Positives = 263/281 (93%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + GIS EEK RLLHCVVVGGGPTGVEFSGELSDFI++DV QRYSHVKDYI VTLIEANEI
Sbjct: 225 VPGISVEEKRRLLHCVVVGGGPTGVEFSGELSDFIIKDVTQRYSHVKDYIQVTLIEANEI 284

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFDDRLRHYAT QL+KSGV+LVRGIVKDV  Q +ILNDG+EVPYGLLVWSTGVGPS  
Sbjct: 285 LSSFDDRLRHYATKQLTKSGVQLVRGIVKDVKPQSIILNDGSEVPYGLLVWSTGVGPSPF 344

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           V SL++PKSPGGRIGIDEWLRVP+V+DVFA+GDCSG+LESTGK VLPALAQVAERQGKYL
Sbjct: 345 VNSLEVPKSPGGRIGIDEWLRVPAVEDVFAIGDCSGFLESTGKQVLPALAQVAERQGKYL 404

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
            +LLN+IGK GGGRA S K++ELGDPFVY+HLGSMATIGRYKALVDLRQ+KE+KG+S+AG
Sbjct: 405 AALLNKIGKEGGGRAGSGKNLELGDPFVYKHLGSMATIGRYKALVDLRQSKEAKGISMAG 464

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           FLSW VWRSAYLTRV+SWRNRFYVAVNWATTF+FGRDISRI
Sbjct: 465 FLSWFVWRSAYLTRVISWRNRFYVAVNWATTFIFGRDISRI 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500874|ref|XP_003519255.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/281 (83%), Positives = 263/281 (93%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + GI EEEK RLLHCVVVGGGPTGVEFSGELSDFI+RDVRQRY+HVKDYIHVTLIEANEI
Sbjct: 205 VPGIEEEEKQRLLHCVVVGGGPTGVEFSGELSDFIVRDVRQRYAHVKDYIHVTLIEANEI 264

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFD RLR YAT QL+KSGVRLVRGIVKDV+ +K+ILNDGTEVPYGLLVWSTGVGPS +
Sbjct: 265 LSSFDVRLRQYATNQLTKSGVRLVRGIVKDVEEKKIILNDGTEVPYGLLVWSTGVGPSAI 324

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           ++SLDLPK+PGGRIGIDEWLRVP+V+D+F++GDCSG++ESTGKT LPALAQVAERQGKYL
Sbjct: 325 IRSLDLPKAPGGRIGIDEWLRVPTVEDIFSIGDCSGFVESTGKTPLPALAQVAERQGKYL 384

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
             LLN+IGKA GGRANSAKD++ GD FVY+H+GSMA+IG YKALVDLRQNKE KGLSLAG
Sbjct: 385 GILLNKIGKANGGRANSAKDVDFGDQFVYKHMGSMASIGSYKALVDLRQNKEGKGLSLAG 444

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           F+SW +WRSAYLTRV+SWRNRFYVA+NWATT VFGRDISRI
Sbjct: 445 FVSWFIWRSAYLTRVISWRNRFYVAINWATTLVFGRDISRI 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488127|gb|ABK95883.1| unknown [Populus trichocarpa]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/281 (85%), Positives = 259/281 (92%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + G+SEEEKSRLLHCVVVGGGPTGVEFSGELSDFI++DVRQ YSHVKDYIHVTLIEANEI
Sbjct: 208 MPGLSEEEKSRLLHCVVVGGGPTGVEFSGELSDFILKDVRQTYSHVKDYIHVTLIEANEI 267

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFDD LR YAT QL+KSGV LVRGIVKDV  QKLIL DGTEVPYGLLVWSTGVGPS+ 
Sbjct: 268 LSSFDDSLRRYATKQLTKSGVHLVRGIVKDVKPQKLILTDGTEVPYGLLVWSTGVGPSSF 327

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           VKSL+L KSPGGRIGIDEWLRVPSV DVFA+GDCSG+LESTGK VLPALAQVAERQGKYL
Sbjct: 328 VKSLELSKSPGGRIGIDEWLRVPSVPDVFAIGDCSGFLESTGKPVLPALAQVAERQGKYL 387

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
             LLN+IGK GGGR  S +++ELGDPFVYRHLGSMATIGRYKALVDLRQ+KE+KGL+L G
Sbjct: 388 AKLLNKIGKDGGGRRTSGEEVELGDPFVYRHLGSMATIGRYKALVDLRQSKEAKGLALKG 447

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           F SW +WRSAYLTRV+SWRNRFYVA+NWATTFVFGRDISRI
Sbjct: 448 FASWFIWRSAYLTRVISWRNRFYVAINWATTFVFGRDISRI 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434562|ref|XP_002277505.1| PREDICTED: probable NADH dehydrogenase [Vitis vinifera] gi|297745883|emb|CBI15939.3| unnamed protein product [Vitis vinifera]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/281 (84%), Positives = 259/281 (92%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + GISE EK RLLHCVVVGGGPTGVEFSGELSDFI RDV QRY+HVK+YIHVTLIEANEI
Sbjct: 219 VPGISEAEKQRLLHCVVVGGGPTGVEFSGELSDFITRDVHQRYAHVKNYIHVTLIEANEI 278

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFDDRLRHYAT QL+KSGVRLVRGIVKDV   K+ILN+GTEVPYGLLVWSTGVGPS+ 
Sbjct: 279 LSSFDDRLRHYATRQLTKSGVRLVRGIVKDVKVDKIILNNGTEVPYGLLVWSTGVGPSSF 338

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           VKS+++PKSPGGRIGIDEWLRVPS QD+FA+GDCSG+LESTGK VLPALAQVAERQGKYL
Sbjct: 339 VKSMEVPKSPGGRIGIDEWLRVPSAQDIFAIGDCSGFLESTGKPVLPALAQVAERQGKYL 398

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
              LNRIGKAGGG AN A+DME G+PFVY+HLGSMA++GRYKALVDLRQ KE KGLSLAG
Sbjct: 399 AEQLNRIGKAGGGYANRARDMEFGEPFVYKHLGSMASLGRYKALVDLRQGKEGKGLSLAG 458

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           F SW++WRSAYLTRV+SWRNR YVA+NWATTFVFGRDISRI
Sbjct: 459 FTSWIIWRSAYLTRVLSWRNRLYVAINWATTFVFGRDISRI 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553084|ref|XP_003544888.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/281 (83%), Positives = 263/281 (93%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + GI EEEK RLLHCVVVGGGPTGVEFSGELSDFI+RDVRQRY+HVKDYIHVTLIEANEI
Sbjct: 205 VPGIEEEEKQRLLHCVVVGGGPTGVEFSGELSDFIVRDVRQRYAHVKDYIHVTLIEANEI 264

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFD RLR YAT QL+KSGVRLVRGIVKDV+ +K+ILNDGTEVPYGLLVWSTGVGPS +
Sbjct: 265 LSSFDVRLRQYATNQLTKSGVRLVRGIVKDVEEKKIILNDGTEVPYGLLVWSTGVGPSAI 324

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           ++SLDLPK+PGGRIGIDEWLRVP+V+D+F++GDCSG++ESTGKT LPALAQVAERQGKYL
Sbjct: 325 IQSLDLPKAPGGRIGIDEWLRVPTVEDIFSIGDCSGFVESTGKTPLPALAQVAERQGKYL 384

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
             LLN+IGKA GGRANSAKD++ GD FVY+H+GSMA+IG YKALVDLRQ+KE KGLSLAG
Sbjct: 385 AFLLNKIGKANGGRANSAKDVDFGDQFVYKHMGSMASIGSYKALVDLRQSKEGKGLSLAG 444

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           F+SW +WRSAYLTRV+SWRNRFYVA+NWATT VFGRDISRI
Sbjct: 445 FVSWFIWRSAYLTRVISWRNRFYVAINWATTLVFGRDISRI 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560820|ref|XP_002521423.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis] gi|223539322|gb|EEF40913.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/279 (81%), Positives = 252/279 (90%)

Query: 5   GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS 64
           GI EEEK RLLHCVV+GGGPTGVEFSGELSDFIMRDV++RY+HVKD+I VTLIEANEILS
Sbjct: 267 GIPEEEKKRLLHCVVIGGGPTGVEFSGELSDFIMRDVQERYAHVKDHIKVTLIEANEILS 326

Query: 65  SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK 124
           SFD  LR YAT  L+KSGVRL RG+VK+V  +KL L+DGTEVPYGLLVWSTGVGPS  VK
Sbjct: 327 SFDVGLRQYATNHLTKSGVRLARGVVKEVHPKKLALSDGTEVPYGLLVWSTGVGPSQFVK 386

Query: 125 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 184
           SLDLPKSPGGRIGIDEWLRVPSV+DVFA+GDC+G+LE TG+ VLPALAQVAERQGKYL  
Sbjct: 387 SLDLPKSPGGRIGIDEWLRVPSVEDVFALGDCAGFLEQTGRPVLPALAQVAERQGKYLVG 446

Query: 185 LLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFL 244
           L N+IGK  GG+A  AKD+ LGDPFVY+H+GSMA++GRYKALVDLRQ+K++KGLSLAGF 
Sbjct: 447 LFNKIGKETGGKAFRAKDVRLGDPFVYKHMGSMASVGRYKALVDLRQSKDAKGLSLAGFF 506

Query: 245 SWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           SWL+WRSAYLTRVVSWRNRFYVAVNWATT VFGRD SRI
Sbjct: 507 SWLIWRSAYLTRVVSWRNRFYVAVNWATTLVFGRDNSRI 545

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536893|gb|AAM61225.1| putative NADH dehydrogenase (ubiquinone oxidoreductase) [Arabidopsis thaliana]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/281 (83%), Positives = 261/281 (92%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + GI E+EK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRYSHVKD I VTLIEA +I
Sbjct: 230 VPGIGEDEKKRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIRVTLIEARDI 289

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFDDRLRHYA  QL+KSGV+LVRGIVK+V  QKLIL+DGTEVPYGLLVWSTGVGPS+ 
Sbjct: 290 LSSFDDRLRHYAIKQLNKSGVKLVRGIVKEVKPQKLILDDGTEVPYGLLVWSTGVGPSSF 349

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           V+SLD PK PGGRIGIDEW+RVPSVQDVFA+GDCSGYLESTGK+ LPALAQVAER+GKYL
Sbjct: 350 VRSLDFPKDPGGRIGIDEWMRVPSVQDVFAIGDCSGYLESTGKSTLPALAQVAEREGKYL 409

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
            +L N +GKAGGGRANSAK+MELG+PFVY+HLGSMATIGRYKALVDLR++KE KG+S+AG
Sbjct: 410 TNLFNVMGKAGGGRANSAKEMELGEPFVYKHLGSMATIGRYKALVDLRESKEGKGISMAG 469

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           FLSW +WRSAYLTRVVSWRNRFYVA+NW TTFVFGRDISRI
Sbjct: 470 FLSWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGRDISRI 510

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104264|ref|XP_002313376.1| predicted protein [Populus trichocarpa] gi|222849784|gb|EEE87331.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/281 (85%), Positives = 259/281 (92%)

Query: 3   LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
           + G+SEEEKSRLLHCVVVGGGPTGVEFSGELSDFI++DVRQ YSHVKDYIHVTLIEANEI
Sbjct: 172 MPGLSEEEKSRLLHCVVVGGGPTGVEFSGELSDFILKDVRQTYSHVKDYIHVTLIEANEI 231

Query: 63  LSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
           LSSFDD LR YAT QL+KSGV LVRGIVKDV  QKLIL DGTEVPYGLLVWSTGVGPS+ 
Sbjct: 232 LSSFDDSLRRYATKQLTKSGVHLVRGIVKDVKPQKLILTDGTEVPYGLLVWSTGVGPSSF 291

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           VKSL+L KSPGGRIGIDEWLRVPSV DVFA+GDCSG+LESTGK VLPALAQVAERQGKYL
Sbjct: 292 VKSLELSKSPGGRIGIDEWLRVPSVPDVFAIGDCSGFLESTGKPVLPALAQVAERQGKYL 351

Query: 183 FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAG 242
             LLN+IGK GGGR  S +++ELGDPFVYRHLGSMATIGRYKALVDLRQ+KE+KGL+L G
Sbjct: 352 AKLLNKIGKDGGGRRTSGEEVELGDPFVYRHLGSMATIGRYKALVDLRQSKEAKGLALKG 411

Query: 243 FLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           F SW +WRSAYLTRV+SWRNRFYVA+NWATTFVFGRDISRI
Sbjct: 412 FASWFIWRSAYLTRVISWRNRFYVAINWATTFVFGRDISRI 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385274841|dbj|BAM13875.1| type II NAD(P)H dehydrogenase [Arum maculatum]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/279 (80%), Positives = 254/279 (91%)

Query: 5   GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS 64
           G+SEEEKSRLLHCVV+GGGPTGVEFSGELSDFI RDVRQRYSHVKDY+ VTLIEANEILS
Sbjct: 277 GVSEEEKSRLLHCVVIGGGPTGVEFSGELSDFITRDVRQRYSHVKDYVRVTLIEANEILS 336

Query: 65  SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK 124
           SFD  LR YAT  L+KSGVRLVRG+VK+V  +K++L+DGTEVPYGLLVWSTGVGPS   K
Sbjct: 337 SFDVSLRQYATNHLTKSGVRLVRGVVKEVMPKKILLSDGTEVPYGLLVWSTGVGPSGFTK 396

Query: 125 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 184
           S+DLPKSPGGRIGIDEWLRVPSV DVFA+GDC+G+L+ TGK VLPALAQVAERQGKYL  
Sbjct: 397 SIDLPKSPGGRIGIDEWLRVPSVDDVFALGDCAGFLQETGKPVLPALAQVAERQGKYLAD 456

Query: 185 LLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFL 244
           LLNRIGK  GG+A +++ ++L DPFVYRHLGSMA++GRYKALVDLRQ+K++KGL++AGF+
Sbjct: 457 LLNRIGKQNGGKAFASRGIDLRDPFVYRHLGSMASVGRYKALVDLRQSKDAKGLAMAGFV 516

Query: 245 SWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           SW +WRSAYLTRVVSWRNRFYVAVNWATT VFGRD SRI
Sbjct: 517 SWFIWRSAYLTRVVSWRNRFYVAVNWATTLVFGRDNSRI 555

Source: Arum maculatum

Species: Arum maculatum

Genus: Arum

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2007427	510	NDA1 "AT1G07180" [Arabidopsis	0.985	0.547	0.842	9.6e-128
TAIR|locus:2045708	508	NDA2 "AT2G29990" [Arabidopsis	0.985	0.549	0.827	3.4e-125
TAIR|locus:2123713	571	NDB1 "AT4G28220" [Arabidopsis	0.547	0.271	0.390	4.5e-45
TAIR|locus:2119667	580	NDB3 "AT4G21490" [Arabidopsis	0.547	0.267	0.398	2.5e-43
TAIR|locus:2051431	582	NDB4 "AT2G20800" [Arabidopsis	0.540	0.262	0.407	2.8e-43
ASPGD|ASPL0000060585	570	ndiF [Emericella nidulans (tax	0.628	0.312	0.381	4e-40
UNIPROTKB|G4N8E7	587	MGG_06276 "Uncharacterized pro	0.614	0.296	0.379	1.1e-37
DICTYBASE|DDB_G0295661	584	DDB_G0295661 "pyridine nucleot	0.639	0.309	0.353	4.2e-35
DICTYBASE|DDB_G0290197	654	DDB_G0290197 "putative NADH de	0.367	0.159	0.4	6e-35
ASPGD|ASPL0000068060	702	ndeA [Emericella nidulans (tax	0.614	0.247	0.328	7.1e-32

TAIR|locus:2007427 NDA1 "AT1G07180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 235/279 (84%), Positives = 259/279 (92%)

Query:     5 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS 64
             GI E+EK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRYSHVKD I VTLIEA +ILS
Sbjct:   232 GIGEDEKKRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIRVTLIEARDILS 291

Query:    65 SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK 124
             SFDDRLRHYA  QL+KSGV+LVRGIVK+V  QKLIL+DGTEVPYG LVWSTGVGPS+ V+
Sbjct:   292 SFDDRLRHYAIKQLNKSGVKLVRGIVKEVKPQKLILDDGTEVPYGPLVWSTGVGPSSFVR 351

Query:   125 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 184
             SLD PK PGGRIGIDEW+RVPSVQDVFA+GDCSGYLESTGK+ LPALAQVAER+GKYL +
Sbjct:   352 SLDFPKDPGGRIGIDEWMRVPSVQDVFAIGDCSGYLESTGKSTLPALAQVAEREGKYLAN 411

Query:   185 LLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFL 244
             L N +GKAGGGRANSAK+MELG+PFVY+HLGSMATIGRYKALVDLR++KE KG+S+AGFL
Sbjct:   412 LFNVMGKAGGGRANSAKEMELGEPFVYKHLGSMATIGRYKALVDLRESKEGKGISMAGFL 471

Query:   245 SWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
             SW +WRSAYLTRVVSWRNRFYVA+NW TTFVFGRDISRI
Sbjct:   472 SWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGRDISRI 510

GO:0003954 "NADH dehydrogenase activity" evidence=ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0071482 "cellular response to light stimulus" evidence=IEP

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2045708 NDA2 "AT2G29990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
 Identities = 231/279 (82%), Positives = 256/279 (91%)

Query:     5 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS 64
             GIS+EEK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILS
Sbjct:   230 GISKEEKRRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILS 289

Query:    65 SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK 124
             SFDDRLR YA  QL+KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS  V+
Sbjct:   290 SFDDRLRRYAIKQLNKSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVR 349

Query:   125 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 184
             SL LPK P GRIGIDEW+RVPSVQDVFA+GDCSGYLE+TGK  LPALAQVAER+GKYL +
Sbjct:   350 SLGLPKDPTGRIGIDEWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVAEREGKYLAN 409

Query:   185 LLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFL 244
             LLN IGK  GGRANSAK++ELG PFVY+HLGSMATIGRYKALVDLR++K++KG+S+ GF+
Sbjct:   410 LLNAIGKGNGGRANSAKEIELGVPFVYKHLGSMATIGRYKALVDLRESKDAKGISMTGFV 469

Query:   245 SWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
             SW +WRSAYLTRV+SWRNRFYVA+NW TTFVFGRDISRI
Sbjct:   470 SWFIWRSAYLTRVISWRNRFYVAINWFTTFVFGRDISRI 508

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2123713 NDB1 "AT4G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.5e-45, Sum P(2) = 4.5e-45
 Identities = 64/164 (39%), Positives = 105/164 (64%)

Query:     3 LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE- 61
             L G++EE++ R LH V+VGGGPTGVEF+ EL DFI+ D+ + Y  VK+ + +TLI++ + 
Sbjct:   203 LPGLTEEQRRRKLHFVIVGGGPTGVEFAAELHDFIIEDITKIYPSVKELVKITLIQSGDH 262

Query:    62 ILSSFDDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLILNDG--TEVPYGLLVWST 115
             IL++FD+R+  +A  + ++ G+ +  G+    V D D    + + G    +P+GL++WST
Sbjct:   263 ILNTFDERISSFAEQKFTRDGIDVQTGMRVMSVTDKDITVKVKSSGELVSIPHGLILWST 322

Query:   116 GVGPSTLVKSLDLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCS 157
             GVG   ++         GGR  +  +EWL+V   ++V+AVGDC+
Sbjct:   323 GVGTRPVISDFMEQVGQGGRRAVATNEWLQVTGCENVYAVGDCA 366

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2119667 NDB3 "AT4G21490" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 65/163 (39%), Positives = 102/163 (62%)

Query:     3 LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NE 61
             L G++E+E+ R+LH VVVGGGPTGVEF+ EL DF+  D+ + Y   K+ + +TL+EA + 
Sbjct:   209 LPGLNEQERKRMLHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAADH 268

Query:    62 ILSSFDDRLRHYATTQLSKSGVRLVRG--IVKDVD---SQKLILNDGTEVPYGLLVWSTG 116
             IL+ FD R+  +A  + ++ G+ +  G  +VK  D   S K    + + +PYG++VWSTG
Sbjct:   269 ILTMFDKRITEFAEEKFTRDGIDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTG 328

Query:   117 VGPSTLVKSLDLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCS 157
             +G   ++K        G R  +  DEWLRV    +++A+GDC+
Sbjct:   329 IGTRPVIKDFMKQIGQGNRRALATDEWLRVEGCDNIYALGDCA 371

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2051431 NDB4 "AT2G20800" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
 Identities = 66/162 (40%), Positives = 100/162 (61%)

Query:     3 LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE- 61
             L  ++EEE+ ++LH VVVGGGPTGVEFS EL DF+++DV + Y  V+++  +TL+EA + 
Sbjct:   215 LPNLTEEERKKILHFVVVGGGPTGVEFSAELHDFLVQDVAKIYPKVQEFTKITLLEAGDH 274

Query:    62 ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILND---GTEV--PYGLLVWST 115
             IL+ FD R+  +A  +  + G+ L  G +V  V + ++   +   G  V  PYG++VWST
Sbjct:   275 ILNMFDKRITAFAEEKFQRDGIDLKTGSMVVGVTADEISTKERETGKIVSEPYGMVVWST 334

Query:   116 GVGPSTLVKSLDLPKSPGGR--IGIDEWLRVPSVQDVFAVGD 155
             G+G   ++K        G R  +  DEWLRV     V+A+GD
Sbjct:   335 GIGSRPVIKDFMQQIGQGQRRVLATDEWLRVEGCDGVYALGD 376

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

ASPGD|ASPL0000060585 ndiF [Emericella nidulans (taxid:162425)]

 Score = 293 (108.2 bits), Expect = 4.0e-40, Sum P(2) = 4.0e-40
 Identities = 76/199 (38%), Positives = 113/199 (56%)

Query:     7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSS 65
             SEEE  RLLH VVVGGGPTGVEF+GEL DF   D+R+    +++   VTL+EA   +L  
Sbjct:   260 SEEEIKRLLHMVVVGGGPTGVEFAGELQDFFEHDLRKWVPEIQENFRVTLVEALPNVLPM 319

Query:    66 FDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQ----KLILNDGTE----VPYGLLVWSTG 116
             F  +L  Y  +   +  + +  + +VK+V  +    ++   DGT+    +PYGLLVW+TG
Sbjct:   320 FSKQLIDYTESTFKEESITIRTKTMVKNVTDKYIEAEVTKPDGTKELETIPYGLLVWATG 379

Query:   117 VGPSTLVKSL--DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALA 172
                  +V+ L   LP     R G  ++E+L V   ++V+AVGDC+  + +   T     A
Sbjct:   380 NAIRPIVRDLMSQLPAQKNSRRGLAVNEYLVVNGTENVWAVGDCA--ITNYAPT-----A 432

Query:   173 QVAERQGKYLFSLLNRIGK 191
             QVA ++G +L  L N + K
Sbjct:   433 QVASQEGAFLARLFNTMAK 451

GO:0006091 "generation of precursor metabolites and energy" evidence=RCA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=RCA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|G4N8E7 MGG_06276 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 283 (104.7 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 74/195 (37%), Positives = 109/195 (55%)

Query:     9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFD 67
             EE  RLL  VVVGGGPTGVEF+GEL+DF   D+++    + D   VTL+EA   +L SF 
Sbjct:   279 EEIDRLLSVVVVGGGPTGVEFAGELADFFEEDIKKLIPEISDRFKVTLVEALPSVLPSFS 338

Query:    68 DRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILN----DGTE----VPYGLLVWSTGVG 118
              +L  Y  + L +  + +  + +V+ V  + +       DGT+    +PYGLLVW+TG  
Sbjct:   339 KQLIEYTESTLKEEKINIETKTMVQKVTDKSVEATTTRPDGTKEKRVMPYGLLVWATGNA 398

Query:   119 PSTLVKSL--DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
                LVK L   +P     R G  ++E+L V   +D++A+GDC+  +   G T     AQV
Sbjct:   399 VRPLVKDLCARIPAQKDSRRGLAVNEYLVVQGARDIWAIGDCA--VAGYGPT-----AQV 451

Query:   175 AERQGKYLFSLLNRI 189
             A ++G +L  L N +
Sbjct:   452 ASQEGAFLARLFNNM 466

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0295661 DDB_G0295661 "pyridine nucleotide-disulphide oxidoreductase, NAD-binding region domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 250 (93.1 bits), Expect = 4.2e-35, Sum P(2) = 4.2e-35
 Identities = 71/201 (35%), Positives = 114/201 (56%)

Query:     5 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEIL 63
             G  E+E  RLL+ VVVGGGP+GVEF+ EL+DF+  D+ + Y   K  I+VTL+EA   IL
Sbjct:   268 GQPEKEIDRLLNFVVVGGGPSGVEFTAELNDFLQSDLLKTYPLAKR-INVTLVEALPHIL 326

Query:    64 SSFDDRLRHYATTQL-SKSGVRL-----VRGI-VKDVDSQKLILNDGTEVPYGLLVWSTG 116
             + FD ++  +   +L S +  ++     V G+  K++  +     + +  PYGLLVW+TG
Sbjct:   327 TIFDKKIIDHVEKRLQSSNNTKIWTKTAVVGVREKEITVKNTTTKEESIHPYGLLVWATG 386

Query:   117 VGP----STLVKSLDLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA 170
               P    + +++S+  P     R G  +D++ RV     ++++GD S    +  K  L  
Sbjct:   387 NTPRKITTQIMQSIG-PNIQNNRRGLVVDDYFRVAGTDGIWSIGDAS---INPSKP-LAQ 441

Query:   171 LAQVAERQGKYLFSLLNRIGK 191
              AQVA +QG+YL  L N++ +
Sbjct:   442 TAQVASQQGRYLGRLFNQLAE 462

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0290197 DDB_G0290197 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 193 (73.0 bits), Expect = 6.0e-35, Sum P(3) = 6.0e-35
 Identities = 48/120 (40%), Positives = 66/120 (55%)

Query:   166 TVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDP--FVYRHLGSMATIGRY 223
             T LP+ AQ A +Q KYL   LN   + G       KD     P  F Y+HLGS A IG +
Sbjct:   549 TALPSTAQCASQQAKYLAETLN--DQYG-------KDPSTFQPHNFSYKHLGSFAYIGSH 599

Query:   224 KALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
              A+ D+ Q       +  GF  W +W++ YL +  S +N+F V+++W  T +FGRDISRI
Sbjct:   600 TAIADIPQT-----FTGGGFGVWWMWKAVYLKKQFSLKNKFLVSIDWVKTTLFGRDISRI 654

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000068060 ndeA [Emericella nidulans (taxid:162425)]

 Score = 232 (86.7 bits), Expect = 7.1e-32, Sum P(2) = 7.1e-32
 Identities = 62/189 (32%), Positives = 103/189 (54%)

Query:     7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV-KDYIHVTLIEA-NEILS 64
             ++EE+ RLL  VV GGGPTGVEF+ EL D +  D+   +  + ++ I V +I++ + IL+
Sbjct:   318 TDEERKRLLSFVVCGGGPTGVEFASELFDLLNEDLLYSFPKILRNEISVHIIQSRSHILN 377

Query:    65 SFDDRLRHYATTQLSKSGVR-LVRGIVKDVDSQKLI---LNDGT----EVPYGLLVWSTG 116
             ++D+ L  +A ++ ++  V  L    VK+V   K++   L DG     E+P G  +WSTG
Sbjct:   378 TYDEALSKFAESRFARDDVDVLTNARVKEVREDKVVFTQLEDGKTVTKEIPMGFCLWSTG 437

Query:   117 VGPSTLVKSL-DLPKSPGGRIGI--DEWLRV--PSVQDVFAVGDCSGYLESTGKTVLPAL 171
             VG S     L D  ++   +  +  D  LR+    + DV+A+GDC+         ++  L
Sbjct:   438 VGRSDFCSRLSDKLEAQNNKHALETDSHLRLIGAPLGDVYAIGDCATVQNKVADHIVSFL 497

Query:   172 AQVAERQGK 180
               +A  +GK
Sbjct:   498 RTIAWEKGK 506

GO:0006091 "generation of precursor metabolites and energy" evidence=RCA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWA1	NDA1_ARATH	1, ., 6, ., -, ., -	0.8362	0.9929	0.5509	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-97
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	5e-60
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	5e-20
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-19
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-13
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	8e-11
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	5e-10
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	4e-08
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	8e-08
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	1e-07
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	3e-07
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	8e-07
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	2e-06
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-06
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	5e-06
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	1e-05
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	2e-05
PLN02546	558	PLN02546, PLN02546, glutathione reductase	2e-05
PLN02507	499	PLN02507, PLN02507, glutathione reductase	5e-05
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	5e-05
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	6e-05
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	6e-05
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	2e-04
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	2e-04
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	3e-04
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	5e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	0.004
TIGR02053	463	TIGR02053, MerA, mercuric reductase	0.004

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score =  292 bits (749), Expect = 2e-97
 Identities = 130/279 (46%), Positives = 172/279 (61%), Gaps = 22/279 (7%)

Query: 7   SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSS 65
           S EE+ RLLH VVVGGGPTGVEF+ EL+DF   DVR     + +   VT++EA +E+L S
Sbjct: 166 SVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS 225

Query: 66  FDDRLRHYATTQLSKSGVRLV-RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK 124
           FD  LR Y   +L + GV +  +  VK+V  ++++L DG  +P GL+VWSTGVGP  L K
Sbjct: 226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTK 285

Query: 125 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 184
            L + K+  GRI +D+ LRV  + +VFA+GDC+    +  +  LP LAQVA +QG YL  
Sbjct: 286 QLKVDKTSRGRISVDDHLRVKPIPNVFALGDCA----ANEERPLPTLAQVASQQGVYLAK 341

Query: 185 LLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFL 244
             N          N  K   +  PFVYR LGS+A +G Y A+V L          L+GF 
Sbjct: 342 EFN----------NELKGKPMSKPFVYRSLGSLAYLGNYSAIVQL------GAFDLSGFK 385

Query: 245 SWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283
           + L WRSAYLT + SWR++ YV VNWA T +FGRDI+R 
Sbjct: 386 ALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424

Length = 424

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  195 bits (498), Expect = 5e-60
 Identities = 100/285 (35%), Positives = 150/285 (52%), Gaps = 25/285 (8%)

Query: 1   MFLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA- 59
            F     EE+   LL  V+VGGGPTGVE +GEL++ + R ++ ++      + V L+EA 
Sbjct: 142 AFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLK-KFRVDPSELRVILVEAG 200

Query: 60  NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDG-TEVPYGLLVWSTGV 117
             IL  F  +L  YA   L K GV ++ G  V +V    + L DG  E+P   +VW+ GV
Sbjct: 201 PRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGV 260

Query: 118 GPSTLVKSL-DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE 176
             S L+K L  L     GR+ ++  L+VP   D+FA GDC+          +P  AQ A 
Sbjct: 261 RASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAV---IDPRPVPPTAQAAH 317

Query: 177 RQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESK 236
           +QG+Y    +    K         K ++   PF Y+  G++A++G + A+ DL       
Sbjct: 318 QQGEYAAKNIKARLK--------GKPLK---PFKYKDKGTLASLGDFSAVADL------G 360

Query: 237 GLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDIS 281
           G+ L GFL+WL+ R+AYL  ++  R+R  VA+ W TT++ GR  S
Sbjct: 361 GVKLKGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTGRRSS 405

Length = 405

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 88.1 bits (219), Expect = 5e-20
 Identities = 49/174 (28%), Positives = 68/174 (39%), Gaps = 13/174 (7%)

Query: 17  CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 76
             VVGGG  GVE +  L        R+R         VTLI    +L  F  ++R     
Sbjct: 148 LAVVGGGAAGVEIALAL--------RRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLR 199

Query: 77  QLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 135
            L++ G+ +  G  V       LIL DG  +P   ++W+TG      +    LP    G 
Sbjct: 200 LLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGF 259

Query: 136 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 189
           + +D  L+  S   VFA GDC   +        P     A RQ   L + L   
Sbjct: 260 LRVDPTLQSLSHPHVFAAGDC-AVIT---DAPRPKAGVYAVRQAPILAANLRAS 309

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 24/153 (15%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDD-----R 69
             VVVGGG  G+E +  L+                   VT++E  + +L+  DD      
Sbjct: 144 RVVVVGGGYIGLELAAALAKLGK--------------EVTVVERRDRLLARADDEISAAL 189

Query: 70  LRHYATTQLSKSGVRLVRGIVKDVDSQK--LILNDGTEVPYGLLVWSTGVGPST-LVKSL 126
           L       L  + + +V  +VK  D +   + L DG E+   +++ + G  P+T L++  
Sbjct: 190 LEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTELLEQA 249

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159
            +     G I +DE+LR  SV  ++A GD +  
Sbjct: 250 GVELDERGYIVVDEYLRT-SVPGIYAAGDVAEG 281

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 39/177 (22%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
           V+VGGG  G+EF+   +       +           VT++E  + IL   D  +    T 
Sbjct: 177 VIVGGGYIGLEFASVFAAL---GSK-----------VTVVERGDRILPGEDPEISKELTK 222

Query: 77  QLSKSGVRL-----VRGIVKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 129
           QL K GV++     V  + K  D   + L DG    +    ++ + G  P+T    L L 
Sbjct: 223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT--DGLGLE 280

Query: 130 K-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 181
                    G I +D+ +   +V  ++A+GD  G          P LA VA  +G+ 
Sbjct: 281 NAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG---------PMLAHVAMAEGRI 327

Length = 454

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 61.5 bits (149), Expect = 8e-11
 Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR-LRHYAT 75
           VVVG GP G+E              +R         VTLIEA   +     D  +     
Sbjct: 140 VVVGAGPIGLE--------AAEAAAKRG------KKVTLIEAADRLGGQLLDPEVAEELA 185

Query: 76  TQLSKSGVRLVRGI-VKDVD-------SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 127
             L K GV L+ G  V  V+        ++++  DG E+   L++   G  P+ ++ +  
Sbjct: 186 ELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA 245

Query: 128 LP--KSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGK 180
           LP     GG + +DE        DV+A GD        TGK    AL  +A   G+
Sbjct: 246 LPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR 301

Length = 415

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 59.0 bits (144), Expect = 5e-10
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 35/161 (21%)

Query: 18  VVVGGGPTGVEFSGELSDFIMR----DVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 73
            VVG G   VEF+G     ++     +                +  +  L  FD  +R  
Sbjct: 171 AVVGAGYIAVEFAG-----VLNGLGSETHL------------FVRGDAPLRGFDPDIRET 213

Query: 74  ATTQLSKSGVRL-----VRGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 127
              ++ K G+RL      + + K+ D S  L L DG  +    L+W+ G  P+T    L 
Sbjct: 214 LVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT--DGLG 271

Query: 128 LPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163
           L       +  G I +DE+    +V  ++AVGD +G +E T
Sbjct: 272 LENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVELT 311

Length = 450

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 53  HVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEV 106
           +V +I+  + IL  SFD  +      +L ++GV L     VK +  +   + ++ D  E 
Sbjct: 174 NVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEY 233

Query: 107 PYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTG 164
              +++ +TGV P+T  ++   L     G I +DE+    S+++++A GDC+  Y   + 
Sbjct: 234 EADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSN 292

Query: 165 KTVLPALAQVAERQGK 180
           K V   LA  A + G+
Sbjct: 293 KNVYVPLATTANKLGR 308

Length = 444

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 22/177 (12%)

Query: 10  EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFD 67
           +K+++ + V++GGG  G+E        +   +R+R        +VTLI  +  IL+  FD
Sbjct: 133 DKNKVENVVIIGGGYIGIE--------MAEALRER------GKNVTLIHRSERILNKLFD 178

Query: 68  DRLRHYATTQLSKSGV--RLVRGIVKDVDSQKL-ILNDGTEVPYGLLVWSTGVGP-STLV 123
           + +      +L K  +  RL   +      +++ +   G      +++ +TG+ P S L 
Sbjct: 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELA 238

Query: 124 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQG 179
           K   L     G I ++E  +  SV +++A GD    +   T K     LA  A + G
Sbjct: 239 KDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMG 294

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 39/177 (22%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
           V++GGG  GVEF+   +              K    VT+IE  + IL   D  +      
Sbjct: 174 VIIGGGVIGVEFASIFASL----------GSK----VTVIEMLDRILPGEDAEVSKVLQK 219

Query: 77  QLSKSGVRLVRG----IVKDVDSQKLILNDGTEVP-----YGLLVWSTGVGPSTL---VK 124
            L K GV+++       V+  D Q    N G E         L+  + G  P+T    ++
Sbjct: 220 ALKKKGVKILTNTKVTAVEKNDDQVTYENKGGETETLTGEKVLV--AVGRKPNTEGLGLE 277

Query: 125 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 181
            L +     GRI +DE++R  +V  ++A+GD        G    P LA VA  +G  
Sbjct: 278 KLGVELDERGRIVVDEYMRT-NVPGIYAIGDV------IGG---PMLAHVASHEGIV 324

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 43/178 (24%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 76
           VV+GGG  GVEF+   +                   VT++EA   IL   D  +   A  
Sbjct: 176 VVIGGGYIGVEFASAYASL--------------GAEVTIVEALPRILPGEDKEISKLAER 221

Query: 77  QLSKSGVR-----LVRGIVKDVDSQKLILNDGT-----EVPYGLLVWSTGVGPSTLVKSL 126
            L K G++       + + +  D   + L DG      E  Y +LV + G  P+T  ++L
Sbjct: 222 ALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADY-VLV-AVGRRPNT--ENL 277

Query: 127 DLP----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180
            L     K+  G I +DE LR  +V +++A+GD        G    P LA  A  +G 
Sbjct: 278 GLEELGVKTDRGFIEVDEQLRT-NVPNIYAIGDI------VGG---PMLAHKASAEGI 325

Length = 462

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 76
           VVVGGG  G+EF+  L+                   VT++E  + +L  FD+ +      
Sbjct: 3   VVVGGGYIGLEFASALAKLGS--------------KVTVVERRDRLLRGFDEEIAKILQE 48

Query: 77  QLSKSGVRL-----VRGIVKDVDSQKLILNDGTE 105
           +L K+G+ +     V  I  + D   + L  G  
Sbjct: 49  KLEKNGIEVLLNTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 23/153 (15%)

Query: 19  VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQ 77
           ++GGG  G+EF+G             Y+ +     VT+++A + IL   +  +   A   
Sbjct: 162 IIGGGNIGLEFAG------------LYNKLGS--KVTVLDAASTILPREEPSVAALAKQY 207

Query: 78  LSKSGVRLVRGI----VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPK 130
           + + G+  +       VK+   Q L++ +     +  L+++TG  P+T    +++ D+  
Sbjct: 208 MEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIEL 267

Query: 131 SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163
           +  G I +D++ +  SV  VFAVGD +G  + T
Sbjct: 268 TERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFT 299

Length = 438

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 29/160 (18%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI-EANEILSSFDDRLRHYA 74
             ++ GGG   VEF+G     I R +          +  TLI    EIL  FDD +R   
Sbjct: 168 SILIAGGGYIAVEFAG-----IFRGLG---------VQTTLIYRGKEILRGFDDDMRRGL 213

Query: 75  TTQLSKSGVRLVRG-----IVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 128
              L + G+R++       I KD D + K  L+   E+   +++++TG  P+T    L L
Sbjct: 214 AAALEERGIRILPEDSITSISKDDDGRLKATLSKHEEIVADVVLFATGRSPNT--NGLGL 271

Query: 129 PKS-----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163
             +       G I +DE+ R  S   ++AVGD +  +  T
Sbjct: 272 EAAGVRLNDLGAIAVDEYSRT-STPSIYAVGDVTDRINLT 310

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 31/154 (20%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEANE-ILSSFDDRLRH 72
             V+VGGG    EF+                HV   +   VT++  +  +L   DD +  
Sbjct: 168 SLVIVGGGFIAAEFA----------------HVFSALGVRVTVVNRSGRLLRHLDDDISE 211

Query: 73  YATTQLSKS-GVRLVRGIV---KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 128
             T   SK   VRL R +V   +D     L L+DG+ V   +L+ +TG  P+     LD 
Sbjct: 212 RFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG--DLLDA 269

Query: 129 PKS-----PGGRIGIDEWLRVPSVQDVFAVGDCS 157
             +       GR+ +DE+ R  S + VFA+GD S
Sbjct: 270 AAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVS 302

Length = 451

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 23/168 (13%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
            VVGGG  G+E +G L +  +       +HV ++  + +  A ++     ++LR     +
Sbjct: 149 AVVGGGLLGLEAAGALKNLGVE------THVIEFAPMLM--AEQLDQMGGEQLRR----K 196

Query: 78  LSKSGVRL-----VRGIVKD-VDSQK-LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLP 129
           +   GVR+        IV++ V+++K +   DG+E+    +V+STG+ P   L     L 
Sbjct: 197 IESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLA 256

Query: 130 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA--LAQVA 175
            +P G I I++  +  S  D++A+G+C+ +       V P   +AQVA
Sbjct: 257 VAPRGGIVINDSCQT-SDPDIYAIGECASWNNRVFGLVAPGYKMAQVA 303

Length = 847

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 37/155 (23%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHV--TLIE------ANEILSSFD 67
             VV+GGG  G+E +  L D  M +V      V   +H+  TL+E      A  +L    
Sbjct: 147 KAVVIGGGLLGLEAARGLKDLGM-EV-----TV---VHIAPTLMERQLDRTAGRLLR--- 194

Query: 68  DRLRHYATTQLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-ST 121
                    +L   G++++       IV +   + +   DGTE+P  L+V + G+ P   
Sbjct: 195 --------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDE 246

Query: 122 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
           L K   L  + G  I ++++++  S  D++AVG+C
Sbjct: 247 LAKEAGLAVNRG--IVVNDYMQT-SDPDIYAVGEC 278

Length = 793

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 27/148 (18%)

Query: 19  VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 78
           +VGGG   +EF+G             ++ +K  +HV  I   ++L  FD+ +R +   Q+
Sbjct: 257 IVGGGYIALEFAG------------IFNGLKSDVHV-FIRQKKVLRGFDEEVRDFVAEQM 303

Query: 79  SKSGVRL-----VRGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK-- 130
           S  G+        + I+K  D S  L  N GT   +  ++++TG  P+T  K+L L +  
Sbjct: 304 SLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT--KNLGLEEVG 361

Query: 131 ---SPGGRIGIDEWLRVPSVQDVFAVGD 155
                 G I +DE+ R  SV  ++AVGD
Sbjct: 362 VKMDKNGAIEVDEYSRT-SVPSIWAVGD 388

Length = 558

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 30/162 (18%)

Query: 5   GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-L 63
            +S EE  +    VV+GGG   VEF+      I R +            V L    E+ L
Sbjct: 196 ALSLEELPK--RAVVLGGGYIAVEFAS-----IWRGMG---------ATVDLFFRKELPL 239

Query: 64  SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 118
             FDD +R      L   G+ L     +  + K     K+I + G E    +++++TG  
Sbjct: 240 RGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA 299

Query: 119 PSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGD 155
           P+T  K L+L          G + +DE+ R  ++  ++A+GD
Sbjct: 300 PNT--KRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGD 338

Length = 499

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 25/166 (15%)

Query: 8   EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI-EANEILSSF 66
           +E   R+L    VGGG   VEF+G  + +  R  +           VTL    N IL  F
Sbjct: 184 DEPPRRVL---TVGGGFISVEFAGIFNAYKPRGGK-----------VTLCYRNNMILRGF 229

Query: 67  DDRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPS 120
           D  LR   T QL  +G+ ++       +  + D S+ +    G  +   +++ + G  P 
Sbjct: 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289

Query: 121 TLVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163
           T    LD   +  +  G I +DE+ R  +V +++A+GD +  +  T
Sbjct: 290 TQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTDRVMLT 334

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 50/181 (27%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
           V+VGGG  G+E++  L+DF    V            VT++EA + IL + D  L      
Sbjct: 184 VIVGGGVIGLEWASMLADF---GVE-----------VTVVEAADRILPTEDAELSKEVAR 229

Query: 77  QLSKSGVRLVRG---------------IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 121
            L K GVR+V G               IV + + ++  L         +LV S G  P+T
Sbjct: 230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADK-----VLV-SVGRRPNT 283

Query: 122 L---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
               +++ D+    GG I ID++ +    + ++A+GD  G          P LA VA  +
Sbjct: 284 EGIGLENTDIDVE-GGFIQIDDFCQT-KERHIYAIGDVIGE---------PQLAHVAMAE 332

Query: 179 G 179
           G
Sbjct: 333 G 333

Length = 472

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 32/158 (20%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLI-EANEILSSFDDRLRH 72
             V+VGGG    EF                +HV   +   VT++  + ++L   D+ +  
Sbjct: 171 SLVIVGGGYIAAEF----------------AHVFSALGTRVTIVNRSTKLLRHLDEDISD 214

Query: 73  YATTQLSKS-GVRLVRGIV---KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 128
             T    K   +RL R +    +D D   L L+DG+ V   +L+ +TG  P+     LD 
Sbjct: 215 RFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG--DLLDA 272

Query: 129 PKS-----PGGRIGIDEWLRVPSVQDVFAVGD-CSGYL 160
             +       GRI +DE+ R  S + V+A+GD  S Y 
Sbjct: 273 EAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQ 309

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 40/214 (18%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
           V+VG G   VE +G L            +H+       +I    +L SFD  +    T +
Sbjct: 170 VIVGAGYIAVELAGVLHGLGSE------THL-------VIRHERVLRSFDSMISETITEE 216

Query: 78  LSKSGVRL-----VRGIVKDVDSQKLI-LNDGTEVP-YGLLVWSTGVGPSTLVKSLD--- 127
             K G+ +        + K V+ + +I   DG  +     L+W+ G  P+T    L+   
Sbjct: 217 YEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVG 276

Query: 128 LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 187
           +  +  G+I +DE+    +V  ++A+GD        GK  L  +A  A R+      L  
Sbjct: 277 IKLNEKGQIIVDEYQNT-NVPGIYALGDV------VGKVELTPVAIAAGRK------LSE 323

Query: 188 RIGKAGGGRANSAKDMELGDPFVYRHLGSMATIG 221
           R+     G+ +   D       V+ H   + TIG
Sbjct: 324 RL---FNGKTDDKLDYNNVPTVVFSH-PPIGTIG 353

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 37/175 (21%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF-DDRLRHYA 74
             ++ G G  G E++   S F    V+           VTLI   + L SF DD +    
Sbjct: 177 SLIIYGAGVIGCEYA---SIFAALGVK-----------VTLINTRDRLLSFLDDEISDAL 222

Query: 75  TTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 129
           +  L  SGV +     V  +    D   + L  G ++    L+++   G +     L+L 
Sbjct: 223 SYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYA--NGRTGNTDGLNLE 280

Query: 130 K-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 179
                    G++ ++E  +  +V  ++AVGD  G+         P+LA  +  QG
Sbjct: 281 NAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF---------PSLASASMDQG 325

Length = 461

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 21/151 (13%)

Query: 13  RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH 72
           R     V+GGG  G+E +  L +  M         V   IH       + L     RL  
Sbjct: 139 RFKKAAVIGGGLLGLEAAVGLQNLGMD------VSV---IHHAPGLMAKQLDQTAGRL-- 187

Query: 73  YATTQLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSL 126
               +L + G+  +       IV    + ++   DG+ +   L+V + G+ P+  L  S 
Sbjct: 188 -LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSA 246

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 157
            +       I +++ ++  S  D++AVG+C+
Sbjct: 247 GIKV--NRGIIVNDSMQT-SDPDIYAVGECA 274

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 27/152 (17%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
            + G G   VE    ++              + YI       N +L  FD+ + +     
Sbjct: 241 GIAGSGYIAVELINVVNRLGA----------ESYIFA---RGNRLLRKFDETIINELEND 287

Query: 78  LSKSGVRLV-RGIVKDVDSQK------LILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP- 129
           + K+ + ++    V++++  K       + +      +  +++  G  P+T  + L+L  
Sbjct: 288 MKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT--EDLNLKA 345

Query: 130 ---KSPGGRIGIDEWLRVPSVQDVFAVGDCSG 158
              K+P G I +D+  R  SV+ ++AVGDC  
Sbjct: 346 LNIKTPKGYIKVDDNQRT-SVKHIYAVGDCCM 376

Length = 561

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 51/182 (28%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
            V+GGG  G+E    LS      V+           VT+ E  + IL   D  +   A  
Sbjct: 173 AVIGGGVIGLELGQALSRL---GVK-----------VTVFERGDRILPLEDPEVSKQAQK 218

Query: 77  QLSK---------------SGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 121
            LSK               SG   V  + K   ++ +      E  Y +LV +TG  P+T
Sbjct: 219 ILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETI------EADY-VLV-ATGRRPNT 270

Query: 122 --L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
             L +++  +     GR  +DE  +  SV  ++A GD +G          P L   A  +
Sbjct: 271 DGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNG---------KPPLLHEAADE 320

Query: 179 GK 180
           G+
Sbjct: 321 GR 322

Length = 460

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 40/178 (22%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYA 74
              V+GGG  GVE +            Q ++ +     VT+++ ++ +L   +  +    
Sbjct: 168 SLAVIGGGAIGVELA------------QAFARLG--SEVTILQRSDRLLPREEPEISAAV 213

Query: 75  TTQLSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGL----LVWSTGVGPSTLVKSL 126
              L++ G+ +V    VK V  +   K+I  +       +    L+ +TG  P+T    L
Sbjct: 214 EEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT--DGL 271

Query: 127 DLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 179
            L K        G I +DE LR  S   ++A GD +G L+         L  VA ++G
Sbjct: 272 GLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQ---------LEYVAAKEG 319

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.94
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.93
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.93
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.92
PLN02507	499	glutathione reductase	99.92
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.92
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.92
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.92
PRK07846	451	mycothione reductase; Reviewed	99.91
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.91
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.91
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.91
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.91
PRK06116	450	glutathione reductase; Validated	99.91
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.91
PRK06370	463	mercuric reductase; Validated	99.9
PRK14727	479	putative mercuric reductase; Provisional	99.9
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.9
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.9
PLN02546	558	glutathione reductase	99.9
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.9
TIGR02053	463	MerA mercuric reductase. This model represents the	99.9
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.9
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.9
PTZ00052	499	thioredoxin reductase; Provisional	99.9
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.9
PRK13748	561	putative mercuric reductase; Provisional	99.9
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.89
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.89
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.89
PRK14694	468	putative mercuric reductase; Provisional	99.89
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.89
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.88
PTZ00058	561	glutathione reductase; Provisional	99.88
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.88
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.87
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.87
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.86
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.86
PRK10262	321	thioredoxin reductase; Provisional	99.84
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.84
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.83
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.83
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.82
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.82
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.82
PRK12831	464	putative oxidoreductase; Provisional	99.8
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.8
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.8
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.79
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.79
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.79
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.77
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.76
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.76
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.76
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.75
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.74
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.74
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.73
PRK13984	604	putative oxidoreductase; Provisional	99.71
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.7
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.68
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.67
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.66
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.65
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.65
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.64
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.58
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.5
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.48
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.42
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.39
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.35
PLN02852	491	ferredoxin-NADP+ reductase	99.19
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.12
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.09
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.06
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.94
COG2081	408	Predicted flavoproteins [General function predicti	98.9
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.88
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.88
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.87
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.83
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.82
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.82
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.79
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.78
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.78
PRK06116	450	glutathione reductase; Validated	98.77
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.77
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.77
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.75
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.74
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.74
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.74
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.7
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.7
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.67
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.66
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.65
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.64
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.64
PRK10262	321	thioredoxin reductase; Provisional	98.63
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.62
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.61
PRK06847	375	hypothetical protein; Provisional	98.61
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.61
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.59
PLN02463	447	lycopene beta cyclase	98.58
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.57
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.54
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.54
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.54
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.53
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.52
PRK06370	463	mercuric reductase; Validated	98.51
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.5
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.48
PRK12831	464	putative oxidoreductase; Provisional	98.48
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.48
TIGR02053	463	MerA mercuric reductase. This model represents the	98.47
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.47
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.45
PLN02852	491	ferredoxin-NADP+ reductase	98.44
PLN02546	558	glutathione reductase	98.44
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.43
PRK07236	386	hypothetical protein; Provisional	98.43
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.42
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.41
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.38
KOG2755	334	consensus Oxidoreductase [General function predict	98.37
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.36
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.35
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.34
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.34
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.33
PRK14694	468	putative mercuric reductase; Provisional	98.33
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.33
PRK06834	488	hypothetical protein; Provisional	98.32
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.31
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.31
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.31
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.28
PLN02697	529	lycopene epsilon cyclase	98.26
PLN02661	357	Putative thiazole synthesis	98.26
PTZ00058	561	glutathione reductase; Provisional	98.23
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.22
PLN02507	499	glutathione reductase	98.21
PRK08163	396	salicylate hydroxylase; Provisional	98.21
PRK07588	391	hypothetical protein; Provisional	98.21
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.2
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.2
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.2
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.19
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.19
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.19
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.19
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.18
PRK13748	561	putative mercuric reductase; Provisional	98.16
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.14
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.14
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.14
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.14
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.12
PRK08244	493	hypothetical protein; Provisional	98.11
PRK05868	372	hypothetical protein; Validated	98.1
PRK07846	451	mycothione reductase; Reviewed	98.1
PRK06184	502	hypothetical protein; Provisional	98.1
PTZ00188	506	adrenodoxin reductase; Provisional	98.09
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.09
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.08
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.08
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.06
PRK06753	373	hypothetical protein; Provisional	98.06
PRK09126	392	hypothetical protein; Provisional	98.06
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.05
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.05
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.04
PTZ00052	499	thioredoxin reductase; Provisional	98.04
PRK07190	487	hypothetical protein; Provisional	98.03
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.03
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.02
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.01
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.0
PRK10157	428	putative oxidoreductase FixC; Provisional	98.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.99
PRK13984	604	putative oxidoreductase; Provisional	97.99
PRK09897	534	hypothetical protein; Provisional	97.99
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.98
PRK08013	400	oxidoreductase; Provisional	97.98
PRK07045	388	putative monooxygenase; Reviewed	97.97
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.97
COG0579	429	Predicted dehydrogenase [General function predicti	97.96
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.96
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.95
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.94
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.94
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.93
PRK06475	400	salicylate hydroxylase; Provisional	97.92
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.92
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.91
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.91
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.9
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.9
PRK06996	398	hypothetical protein; Provisional	97.89
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.89
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.88
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.88
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.88
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.87
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.87
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.86
PRK14727	479	putative mercuric reductase; Provisional	97.85
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.84
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.82
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.81
PRK06185	407	hypothetical protein; Provisional	97.8
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.78
PRK10015	429	oxidoreductase; Provisional	97.78
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.78
KOG2755	334	consensus Oxidoreductase [General function predict	97.77
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.75
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.75
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.73
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.72
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.72
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.7
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.69
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.66
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.65
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.64
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.64
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.62
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.59
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.59
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.59
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.58
PRK07538	413	hypothetical protein; Provisional	97.57
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.57
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.55
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.55
PRK06126	545	hypothetical protein; Provisional	97.51
PRK11445	351	putative oxidoreductase; Provisional	97.45
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.44
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.43
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.42
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.39
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.39
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.38
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.38
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.36
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.35
PLN02985	514	squalene monooxygenase	97.3
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.26
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.26
PRK08401	466	L-aspartate oxidase; Provisional	97.22
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.2
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.15
PRK08294	634	phenol 2-monooxygenase; Provisional	97.1
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.1
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.06
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.05
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.94
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	96.82
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	96.72
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	96.69
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.66
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.63
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.58
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.57
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.56
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.53
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.49
PRK07804	541	L-aspartate oxidase; Provisional	96.48
KOG2852	380	consensus Possible oxidoreductase [General functio	96.43
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.43
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.37
PRK08275	554	putative oxidoreductase; Provisional	96.36
PRK06175	433	L-aspartate oxidase; Provisional	96.33
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.33
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.32
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.31
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.3
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.28
PRK11883	451	protoporphyrinogen oxidase; Reviewed	96.25
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.23
PTZ00367	567	squalene epoxidase; Provisional	96.21
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.18
COG3349	485	Uncharacterized conserved protein [Function unknow	96.13
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.03
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.0
PLN02268	435	probable polyamine oxidase	95.99
PRK07233	434	hypothetical protein; Provisional	95.98
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	95.97
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.94
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	95.9
PRK07208	479	hypothetical protein; Provisional	95.89
KOG2853	509	consensus Possible oxidoreductase [General functio	95.88
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.81
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	95.79
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.78
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	95.71
PRK12416	463	protoporphyrinogen oxidase; Provisional	95.7
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	95.66
PLN02487	569	zeta-carotene desaturase	95.65
PLN02464	627	glycerol-3-phosphate dehydrogenase	95.61
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	95.5
PLN02576	496	protoporphyrinogen oxidase	95.5
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.49
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.38
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.22
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.22
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.21
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	95.2
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	95.18
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	95.18
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	95.17
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	95.16
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.11
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.06
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	95.05
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.03
PLN02529	738	lysine-specific histone demethylase 1	95.0
PRK07121	492	hypothetical protein; Validated	95.0
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.99
COG2907	447	Predicted NAD/FAD-binding protein [General functio	94.91
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.75
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.75
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.74
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.64
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	94.62
PRK12842	574	putative succinate dehydrogenase; Reviewed	94.59
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.58
PRK05257	494	malate:quinone oxidoreductase; Validated	94.58
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	94.53
PRK08274	466	tricarballylate dehydrogenase; Validated	94.46
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	94.46
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.35
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.33
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.32
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.31
PLN02328	808	lysine-specific histone demethylase 1 homolog	94.25
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.24
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	94.04
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	93.96
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	93.94
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	93.93
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.88
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.82
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.76
PLN02676	487	polyamine oxidase	93.7
PLN02612	567	phytoene desaturase	93.68
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	93.67
PRK13339	497	malate:quinone oxidoreductase; Reviewed	93.64
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	93.62
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.56
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.55
PRK13977	576	myosin-cross-reactive antigen; Provisional	93.49
PRK02106	560	choline dehydrogenase; Validated	93.48
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.44
PLN03000	881	amine oxidase	93.38
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	93.33
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	93.27
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.27
PTZ00188	506	adrenodoxin reductase; Provisional	93.26
PLN02568	539	polyamine oxidase	93.23
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.23
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.21
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	93.12
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.98
PRK12842	574	putative succinate dehydrogenase; Reviewed	92.95
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.89
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	92.83
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	92.75
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.68
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.52
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	92.43
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.37
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	92.28
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	92.22
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	92.18
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.14
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.12
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	92.07
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.07
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	92.06
PRK08328	231	hypothetical protein; Provisional	92.01
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	91.98
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	91.94
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	91.85
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	91.83
PRK05562	223	precorrin-2 dehydrogenase; Provisional	91.76
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	91.73
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	91.68
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	91.68
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	91.67
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	91.64
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	91.62
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.62
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.54
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	91.37
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	91.28
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	91.25
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	91.25
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	91.19
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	91.16
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	91.15
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	91.12
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	91.08
PRK08223	287	hypothetical protein; Validated	91.02
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	90.97
PLN02602	350	lactate dehydrogenase	90.91
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.88
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	90.87
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	90.81
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	90.78
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	90.72
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	90.7
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.7
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	90.68
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	90.58
PRK04148	134	hypothetical protein; Provisional	90.52
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.51
PLN02612	567	phytoene desaturase	90.42
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	90.18
PLN02976	1713	amine oxidase	90.16
PRK08275	554	putative oxidoreductase; Provisional	90.1
PLN02785	587	Protein HOTHEAD	89.97
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	89.93
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	89.7
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.6
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	89.56
PRK07411	390	hypothetical protein; Validated	89.54
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	89.43
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	89.31
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	89.3
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	89.27
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.25
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	89.19
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	89.09
PLN02735	1102	carbamoyl-phosphate synthase	89.03
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	88.99
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	88.95
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	88.78
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	88.75
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	88.73
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.69
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	88.68
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.66
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	88.62
PRK12839	572	hypothetical protein; Provisional	88.61
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	88.59
COG3573	552	Predicted oxidoreductase [General function predict	88.58
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	88.57
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	88.57
PRK07395	553	L-aspartate oxidase; Provisional	88.57
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	88.52
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	88.5
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	88.49
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	88.47
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	88.45
PRK08071	510	L-aspartate oxidase; Provisional	88.4
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	88.38
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	88.29
PRK06153	393	hypothetical protein; Provisional	88.28
PRK11730	715	fadB multifunctional fatty acid oxidation complex	88.26
PRK13339	497	malate:quinone oxidoreductase; Reviewed	88.2
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	88.14
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	88.09
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	87.93
PRK05442	326	malate dehydrogenase; Provisional	87.88
KOG1495	332	consensus Lactate dehydrogenase [Energy production	87.61
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	87.57
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	87.53
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	87.46
PLN00112	444	malate dehydrogenase (NADP); Provisional	87.37
PRK00536	262	speE spermidine synthase; Provisional	87.33
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	87.33
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	87.32
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	87.17
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	87.14
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	87.03
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	87.02
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.0
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	86.99
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	86.86
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	86.74
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	86.62
PRK09077	536	L-aspartate oxidase; Provisional	86.55
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	86.49
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	86.37
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	86.27
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	85.98
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.98

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=100.00  E-value=1.7e-54  Score=379.11  Aligned_cols=272  Identities=50%  Similarity=0.849  Sum_probs=242.8

Q ss_pred             CCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhC
Q 023375            3 LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS   81 (283)
Q Consensus         3 ~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~   81 (283)
                      .|+..+|||++.+++|||||||+|+|+|+||+++...++.+-||+++++.+|||+|+. .+|+.|+..+.+++++.+.+.
T Consensus       207 ~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~  286 (491)
T KOG2495|consen  207 LPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRD  286 (491)
T ss_pred             cCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhc
Confidence            4788999999999999999999999999999999999999999999999999999998 799999999999999999999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCC----cEEEeeEEEEcCCCCCchhhhccCCCCCCCC--ccccCCCcccCCCCCEEEec
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDG----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG--RIGIDEWLRVPSVQDVFAVG  154 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g----~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g--~i~Vd~~l~~~~~~~VfaiG  154 (283)
                      ||++.++ .|..|+++.+..+.+    ++|||.+++|+||..|.++...+....++.|  ++.||++||+++.+||||+|
T Consensus       287 ~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiG  366 (491)
T KOG2495|consen  287 GIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIG  366 (491)
T ss_pred             cceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEec
Confidence            9999999 799999998887654    6899999999999999999998877777777  79999999999999999999


Q ss_pred             cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCc-----CCCCCCCCceeeecccEEEecCcceeEec
Q 023375          155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSA-----KDMELGDPFVYRHLGSMATIGRYKALVDL  229 (283)
Q Consensus       155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~g~~~slG~~~av~~~  229 (283)
                      ||+..      ...+++||+|.|||.++|++++...+..+......     ......+||+|+++|++++||+++|++++
T Consensus       367 Dca~~------~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl  440 (491)
T KOG2495|consen  367 DCADQ------RGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADL  440 (491)
T ss_pred             ccccc------ccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcC
Confidence            99954      34578999999999999999998876543311000     01111389999999999999999999998


Q ss_pred             cccccCCCeeeecHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCCCCCC
Q 023375          230 RQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI  283 (283)
Q Consensus       230 ~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~  283 (283)
                      +.   ...+...|..+|++|+++|+.++.|||+|+.|++||++.+|||||++++
T Consensus       441 ~~---g~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV~~dW~~~~~fGRd~s~i  491 (491)
T KOG2495|consen  441 PV---GKMWVSAGGSSFWLWRSAYLSKLVSWRNRFLVAIDWEKTFFFGRDSSSI  491 (491)
T ss_pred             cc---CCeeeeccchhhHHHHHHHHHHhhhhhhheeeeeheeeeEEeccccccC
Confidence            63   1238999999999999999999999999999999999999999999875

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=2.4e-51  Score=367.53  Aligned_cols=247  Identities=39%  Similarity=0.707  Sum_probs=227.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      +.++|+|||||++|+|+|++|+++.++.+.. |.....+.+|+|||++ ++||.+++++++++++.|+++||+++++ .|
T Consensus       154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~V  232 (405)
T COG1252         154 ALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPV  232 (405)
T ss_pred             ceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCce
Confidence            5679999999999999999999998765555 4444447899999998 9999999999999999999999999999 89


Q ss_pred             EEEeCCeEEEcCCcE-EEeeEEEEcCCCCCchhhhc-cCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCC
Q 023375           91 KDVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL  168 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~-i~~d~vi~a~G~~~~~~~~~-~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~  168 (283)
                      ++|++++|++++|++ |+++++|||+|.+++++.++ ++++.++.|++.||++||++++|+|||+|||+.++++   .|.
T Consensus       233 t~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~  309 (405)
T COG1252         233 TEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---RPV  309 (405)
T ss_pred             EEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC---CCC
Confidence            999999999999984 99999999999999999999 4888888999999999999999999999999998765   588


Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEEEecCcceeEeccccccCCCeeeecHHHHHH
Q 023375          169 PALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLV  248 (283)
Q Consensus       169 p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~slG~~~av~~~~~~~~~~~~~~~G~~a~~~  248 (283)
                      |++||.|+|||+++|+||.+.++   |+       ++ +||+|+++|+|+|||.+.||+.+      .+..+.|+++|++
T Consensus       310 P~tAQ~A~Qqg~~~a~ni~~~l~---g~-------~l-~~f~y~~~Gtl~~lG~~~av~~~------g~~~l~G~~a~~~  372 (405)
T COG1252         310 PPTAQAAHQQGEYAAKNIKARLK---GK-------PL-KPFKYKDKGTLASLGDFSAVADL------GGVKLKGFLAWLL  372 (405)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhc---CC-------CC-CCCcccceEEEEEccCCceeEEe------cceeeccHHHHHH
Confidence            99999999999999999999987   43       44 99999999999999999999987      4589999999999


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHhccCCCC
Q 023375          249 WRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI  280 (283)
Q Consensus       249 ~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~  280 (283)
                      |+.+|++++.+++++..+..+|.+.++++++.
T Consensus       373 k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~  404 (405)
T COG1252         373 KRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS  404 (405)
T ss_pred             HHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence            99999999999999999999999999998864

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=9.7e-48  Score=354.44  Aligned_cols=258  Identities=51%  Similarity=0.875  Sum_probs=233.1

Q ss_pred             CCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCE
Q 023375            6 ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVR   84 (283)
Q Consensus         6 ~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~   84 (283)
                      .+++++++.++|+|||||++|+|+|.+|+++.++...+.|++++++.+|+||+++ ++++.+++++++.+++.|+++||+
T Consensus       165 ~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~  244 (424)
T PTZ00318        165 TSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVD  244 (424)
T ss_pred             CChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence            3444455667999999999999999999998776667778877778999999997 899999999999999999999999


Q ss_pred             EEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           85 LVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        85 v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++ +|++++++.|++++|+++++|++||++|.+|+++++.++++.+++|+|.||++||++++|||||+|||+.+++  
T Consensus       245 v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~--  322 (424)
T PTZ00318        245 IRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEE--  322 (424)
T ss_pred             EEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCC--
Confidence            9999 8999999999999999999999999999999998888999888889999999999879999999999998643  


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEEEecCcceeEeccccccCCCeeeecH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGF  243 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~slG~~~av~~~~~~~~~~~~~~~G~  243 (283)
                        .+.|++++.|++||+++|+||.+.+.   |+       +..+||.+...|.+++||+++|++++      .++.+.|+
T Consensus       323 --~~~~~~~~~A~~qg~~~A~ni~~~l~---g~-------~~~~~~~~~~~g~~~~lG~~~av~~~------~~~~~~g~  384 (424)
T PTZ00318        323 --RPLPTLAQVASQQGVYLAKEFNNELK---GK-------PMSKPFVYRSLGSLAYLGNYSAIVQL------GAFDLSGF  384 (424)
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHhc---CC-------CCCCCCeecCCceEEEecCCceEEEc------CCceEecH
Confidence              35689999999999999999999886   33       21289999999999999999999986      56899999


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCCCCCC
Q 023375          244 LSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI  283 (283)
Q Consensus       244 ~a~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~  283 (283)
                      ++|++|+++|+.+++++++|++++++|++++||+|++.|.
T Consensus       385 ~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  424 (424)
T PTZ00318        385 KALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF  424 (424)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence            9999999999999999999999999999999999999863

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=1.8e-32  Score=248.32  Aligned_cols=217  Identities=26%  Similarity=0.344  Sum_probs=184.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      ..++|+|||||++|+|+|.+|++..++        .....+|+++....+++.+++.+...+++.|++.||+++++ +|+
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~  215 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVT  215 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeE
Confidence            346999999999999999999875421        01125899995557888899999999999999999999999 899


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcc
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPAL  171 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~  171 (283)
                      +++++.+.+++|+++++|.+|||+|.+|++++..++++.+++|++.||+++|++++|+|||+|||+.+++    .+.|++
T Consensus       216 ~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~----~~~~~~  291 (364)
T TIGR03169       216 RGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD----APRPKA  291 (364)
T ss_pred             EEcCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCC----CCCCCc
Confidence            9988889999999999999999999999988888888888889999999999889999999999998643    346888


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCcee-eecccEEEecCcceeEeccccccCCCeeeecHHHHHHHH
Q 023375          172 AQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVY-RHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWR  250 (283)
Q Consensus       172 ~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~~~slG~~~av~~~~~~~~~~~~~~~G~~a~~~~~  250 (283)
                      ++.|++||+++|+||.+.+.   |+       ++ ++|++ ...+.++|+|.++||++.      .++.+.|+++|++|.
T Consensus       292 ~~~A~~~g~~~a~ni~~~l~---g~-------~~-~~~~~~~~~~~~~~~G~~~~v~~~------~~~~~~~~~~~~~k~  354 (364)
T TIGR03169       292 GVYAVRQAPILAANLRASLR---GQ-------PL-RPFRPQRDYLQLLNTGDRRAVASW------GWIIGPGRWLWRLKD  354 (364)
T ss_pred             hHHHHHhHHHHHHHHHHHhc---CC-------CC-CCCcccccceeEEEcCCCcEEEee------cceeecCccHHHHHH
Confidence            99999999999999998876   33       22 67765 456899999999999865      468999999999999


Q ss_pred             HHHHHhcC
Q 023375          251 SAYLTRVV  258 (283)
Q Consensus       251 ~~~~~~~~  258 (283)
                      .+...++.
T Consensus       355 ~~~~~~~~  362 (364)
T TIGR03169       355 WIDRRFMR  362 (364)
T ss_pred             HHhHHHHh
Confidence            88776653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.94  E-value=2.2e-25  Score=206.65  Aligned_cols=161  Identities=18%  Similarity=0.278  Sum_probs=142.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       147 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v  212 (438)
T PRK13512        147 QVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI  212 (438)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeE
Confidence            4579999999999999999999877              899999997 7889999999999999999999999999 89


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-CCCcCC
Q 023375           91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGKTVL  168 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-~~~~~~  168 (283)
                      +++++..+++++|+++++|.|+|++|.+|+ +++++.+++++++|++.||+++|+ +.|+|||+|||+..... .+....
T Consensus       213 ~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~  291 (438)
T PRK13512        213 DAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPAS  291 (438)
T ss_pred             EEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCcee
Confidence            999988898888999999999999999998 578888888888899999999998 89999999999964322 111224


Q ss_pred             CcchHHHHHHHHHHHHHHHH
Q 023375          169 PALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       169 p~~~~~A~~qg~~~a~~i~~  188 (283)
                      ++.++.|.+||+++|+||..
T Consensus       292 ~~la~~A~~~a~~~a~ni~g  311 (438)
T PRK13512        292 VPLAWGAHRAASIVAEQIAG  311 (438)
T ss_pred             cccchHHHHHHHHHHHHhcC
Confidence            67889999999999999863

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.93  E-value=5e-25  Score=201.84  Aligned_cols=182  Identities=20%  Similarity=0.290  Sum_probs=146.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .+++. +++...+.+.+.+++.||+++++ +
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~  208 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNA  208 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCe
Confidence            4689999999999999999999876              899999987 77764 68888999999999999999999 8


Q ss_pred             eEEEeCC---eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375           90 VKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK  165 (283)
Q Consensus        90 V~~v~~~---~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~  165 (283)
                      |++++.+   .+.+.+|+++++|.||+++|.+|++ +.+.++++.+  +.+.||+++|+ +.|+|||+|||+..+++.+.
T Consensus       209 V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~--~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~  285 (396)
T PRK09754        209 IEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA--NGIVIDEACRT-CDPAIFAGGDVAITRLDNGA  285 (396)
T ss_pred             eEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC--CCEEECCCCcc-CCCCEEEccceEeeeCCCCC
Confidence            9998753   3567889999999999999999995 6667777653  56999999999 89999999999987665333


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecc--cEEEecC
Q 023375          166 TVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGR  222 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~~~slG~  222 (283)
                      ...+++++.|.+||+++|+||.....          +++. .||.+.+..  .+.++|.
T Consensus       286 ~~~~~~~~~A~~qg~~aa~ni~g~~~----------~~~~-~p~~~~~~~~~~~~~~G~  333 (396)
T PRK09754        286 LHRCESWENANNQAQIAAAAMLGLPL----------PLLP-PPWFWSDQYSDNLQFIGD  333 (396)
T ss_pred             EEEECcHHHHHHHHHHHHHHhcCCCC----------CCCC-CCceEEEeCCccEEEeeC
Confidence            33567899999999999999964221          1222 566666543  4566664

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.93  E-value=7.4e-25  Score=201.17  Aligned_cols=180  Identities=28%  Similarity=0.395  Sum_probs=148.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +-+++++|||||++|+|+|..++.++              .+||++++. ++||.+++++++.+.+.|++.|++++++ +
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG--------------~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~  236 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALG--------------SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTK  236 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccce
Confidence            56789999999999999999999998              999999998 8999999999999999999999999999 7


Q ss_pred             eEEEeCC----eEEEcCCc--EEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           90 VKDVDSQ----KLILNDGT--EVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        90 V~~v~~~----~v~~~~g~--~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      +++++.+    .+.+++|+  ++.+|.+++|+|.+||.   -+++.|++++++|+|.||+.+++ +.|+|||+|||+.- 
T Consensus       237 v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~-  314 (454)
T COG1249         237 VTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG-  314 (454)
T ss_pred             EEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCC-
Confidence            8888654    36677776  78999999999999994   36788999999999999966666 89999999999841 


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEEEecCc
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRY  223 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~slG~~  223 (283)
                              |.+++.|..||+++|+||.. ..  ...    .++.. -|+.--....+.++|-.
T Consensus       315 --------~~Lah~A~~eg~iaa~~i~g-~~--~~~----~d~~~-iP~~ift~Peia~VGlt  361 (454)
T COG1249         315 --------PMLAHVAMAEGRIAAENIAG-GK--RTP----IDYRL-IPSVVFTDPEIASVGLT  361 (454)
T ss_pred             --------cccHhHHHHHHHHHHHHHhC-CC--CCc----CcccC-CCEEEECCCcceeeeCC
Confidence                    55999999999999999985 10  011    11122 45554444467777763

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.92  E-value=1.9e-24  Score=199.97  Aligned_cols=161  Identities=24%  Similarity=0.374  Sum_probs=139.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-CCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-LSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||++|+|+|..|++.+              .+|+++++. .+ .+.+++++.+.+.+.|+++||+++.+ +
T Consensus       136 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~  201 (427)
T TIGR03385       136 KVENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEE  201 (427)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCE
Confidence            4589999999999999999999876              899999987 56 47788999999999999999999999 8


Q ss_pred             eEEEeCCe--EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC-
Q 023375           90 VKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-  165 (283)
Q Consensus        90 V~~v~~~~--v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~-  165 (283)
                      |++++++.  +.+.+|+++++|.+||++|.+|+ +++++++++.+++|++.||+++|+ +.|+|||+|||+..+++..+ 
T Consensus       202 v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~  280 (427)
T TIGR03385       202 VDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKK  280 (427)
T ss_pred             EEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCC
Confidence            99998654  36778899999999999999999 678888998888899999999998 89999999999987554222 


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHH
Q 023375          166 TVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      ...+++++.|.+||+++|+||..
T Consensus       281 ~~~~~~~~~A~~~g~~~a~ni~g  303 (427)
T TIGR03385       281 PAWVPLAWGANKMGRIAGENIAG  303 (427)
T ss_pred             ceeeechHHHHHHHHHHHHHhcC
Confidence            23467899999999999999953

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02507 glutathione reductase

Probab=99.92  E-value=7.2e-24  Score=199.11  Aligned_cols=151  Identities=24%  Similarity=0.388  Sum_probs=134.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++|+|||||++|+|+|..++.++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       202 ~~k~vvVIGgG~ig~E~A~~l~~~G--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V  267 (499)
T PLN02507        202 LPKRAVVLGGGYIAVEFASIWRGMG--------------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNL  267 (499)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999887              899999987 7889999999999999999999999999 89


Q ss_pred             EEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDS--QK--LILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.  +.  +.+.+|+++++|.|++++|.+|+. +  +++++++++++|++.||+++|+ +.|+|||+|||+..    
T Consensus       268 ~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~~----  342 (499)
T PLN02507        268 TQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTNR----  342 (499)
T ss_pred             EEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCCC----
Confidence            99864  33  556678899999999999999995 3  4677888888899999999998 99999999999952    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                           +..++.|.+||+++|+||.
T Consensus       343 -----~~l~~~A~~qg~~aa~ni~  361 (499)
T PLN02507        343 -----INLTPVALMEGTCFAKTVF  361 (499)
T ss_pred             -----CccHHHHHHHHHHHHHHHc
Confidence                 5688999999999999985

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.92  E-value=8.7e-24  Score=196.46  Aligned_cols=151  Identities=26%  Similarity=0.399  Sum_probs=134.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..|+.++              .+|+++++. ++++.+++++++.+.+.|++.||+++++ +|
T Consensus       165 ~~~~vvIIGgG~iG~E~A~~l~~~g--------------~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v  230 (450)
T TIGR01421       165 LPKRVVIVGAGYIAVELAGVLHGLG--------------SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKP  230 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            3579999999999999999999887              899999987 7899999999999999999999999999 89


Q ss_pred             EEEeCC-----eEEEcCC-cEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           91 KDVDSQ-----KLILNDG-TEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        91 ~~v~~~-----~v~~~~g-~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      ++++.+     .+++++| +++++|.|+|++|.+|+..   ++.++++.+++|++.||+++|+ +.|+|||+|||+..  
T Consensus       231 ~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~--  307 (450)
T TIGR01421       231 VKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGK--  307 (450)
T ss_pred             EEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCC--
Confidence            988642     3566677 5799999999999999952   4677888888999999999998 89999999999942  


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                             +..++.|.+||+.+|+||.
T Consensus       308 -------~~~~~~A~~~g~~aa~~i~  326 (450)
T TIGR01421       308 -------VELTPVAIAAGRKLSERLF  326 (450)
T ss_pred             -------cccHHHHHHHHHHHHHHHh
Confidence                   6678899999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.92  E-value=4.2e-24  Score=198.54  Aligned_cols=161  Identities=25%  Similarity=0.418  Sum_probs=137.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||++|+|+|.+|.+.+              .+|+++++. ++++ .+++++.+.+.+.|++.||+++++ +
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~  213 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEF  213 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCE
Confidence            4589999999999999999998876              899999987 6776 589999999999999999999999 8


Q ss_pred             eEEEeCCe---EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC-C
Q 023375           90 VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST-G  164 (283)
Q Consensus        90 V~~v~~~~---v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~-~  164 (283)
                      |++++++.   ....++.++++|.+++|+|.+|+ +++++++++.+++|++.||+++|+ +.|||||+|||+..+++. +
T Consensus       214 v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~  292 (444)
T PRK09564        214 VKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSN  292 (444)
T ss_pred             EEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCC
Confidence            99997542   22235567999999999999998 688888998888899999999998 899999999999865432 2


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      ....+++++.|.+||+++|+||..
T Consensus       293 ~~~~~~~~~~A~~qg~~~a~ni~g  316 (444)
T PRK09564        293 KNVYVPLATTANKLGRMVGENLAG  316 (444)
T ss_pred             CeeeccchHHHHHHHHHHHHHhcC
Confidence            233578999999999999999864

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.92  E-value=5e-24  Score=199.24  Aligned_cols=154  Identities=26%  Similarity=0.396  Sum_probs=134.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..++.+.+           .+.+|+|+++. .+++.+++++++.+.+.|++.||+++++ .|
T Consensus       186 ~~~~vvIIGgG~iG~E~A~~~~~l~~-----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v  254 (486)
T TIGR01423       186 PPRRVLTVGGGFISVEFAGIFNAYKP-----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENP  254 (486)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHhcc-----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            46899999999999999998876521           12899999987 7899999999999999999999999999 79


Q ss_pred             EEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           91 KDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        91 ~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      ++++.+     .+++.+++++++|.++|++|.+|+..   +++++++++++|+|.||+++|+ +.|+|||+|||+.    
T Consensus       255 ~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~----  329 (486)
T TIGR01423       255 AKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD----  329 (486)
T ss_pred             EEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCC----
Confidence            998632     36667888999999999999999952   3567888888899999999998 9999999999984    


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                           .+..++.|.+||+++|+||.
T Consensus       330 -----~~~l~~~A~~qG~~aa~ni~  349 (486)
T TIGR01423       330 -----RVMLTPVAINEGAAFVDTVF  349 (486)
T ss_pred             -----CcccHHHHHHHHHHHHHHHh
Confidence                 26789999999999999986

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07846 mycothione reductase; Reviewed

Probab=99.91  E-value=1.6e-23  Score=194.69  Aligned_cols=152  Identities=28%  Similarity=0.385  Sum_probs=131.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..+++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.+ +.||+++++ +
T Consensus       164 ~~~~~vvIIGgG~iG~E~A~~l~~~G--------------~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~  228 (451)
T PRK07846        164 ELPESLVIVGGGFIAAEFAHVFSALG--------------VRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRN  228 (451)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCE
Confidence            34689999999999999999999887              899999997 788999999988877655 568999999 8


Q ss_pred             eEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           90 VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        90 V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      |++++.+    .+.+.+|+++++|.|++|+|.+|+. +  .++.+++++++|++.||+++|+ +.|+|||+|||+..   
T Consensus       229 v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~---  304 (451)
T PRK07846        229 VVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSP---  304 (451)
T ss_pred             EEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCC---
Confidence            9998643    3556688899999999999999994 4  3567888888899999999998 99999999999952   


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                            +++++.|.+||+++|+||..
T Consensus       305 ------~~l~~~A~~~g~~~a~ni~~  324 (451)
T PRK07846        305 ------YQLKHVANHEARVVQHNLLH  324 (451)
T ss_pred             ------ccChhHHHHHHHHHHHHHcC
Confidence                  67889999999999999963

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.91  E-value=2e-23  Score=194.87  Aligned_cols=152  Identities=27%  Similarity=0.441  Sum_probs=135.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++...+.+.|+++||+++++ +|
T Consensus       176 ~~~~vvVIGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v  241 (466)
T PRK07845        176 LPEHLIVVGSGVTGAEFASAYTELG--------------VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRA  241 (466)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEE
Confidence            3479999999999999999999887              899999987 8999999999999999999999999999 89


Q ss_pred             EEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.  +.  +.+.+|+++++|.|++++|.+|+..   +++++++++++|++.||+++|+ +.|+|||+|||+..    
T Consensus       242 ~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~----  316 (466)
T PRK07845        242 ESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV----  316 (466)
T ss_pred             EEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC----
Confidence            99853  33  5567888999999999999999953   5778888888899999999999 99999999999952    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                           +++++.|..||+++|.|+..
T Consensus       317 -----~~l~~~A~~~g~~aa~~i~g  336 (466)
T PRK07845        317 -----LPLASVAAMQGRIAMYHALG  336 (466)
T ss_pred             -----ccchhHHHHHHHHHHHHHcC
Confidence                 67899999999999999863

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.91  E-value=1.6e-23  Score=194.73  Aligned_cols=152  Identities=26%  Similarity=0.437  Sum_probs=134.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..++.++              .+|++++++ .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       165 ~~~~vvVIGgG~~g~E~A~~l~~~G--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v  230 (446)
T TIGR01424       165 LPKSILILGGGYIAVEFAGIWRGLG--------------VQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSL  230 (446)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4679999999999999999999877              899999997 7889999999999999999999999999 89


Q ss_pred             EEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.  +  .+++.+++++++|.+|+|+|.+|+..   ++..+++++++|++.||+++|+ +.|+|||+|||+.     
T Consensus       231 ~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~-----  304 (446)
T TIGR01424       231 TSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTD-----  304 (446)
T ss_pred             EEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCC-----
Confidence            99864  3  35566788999999999999999942   4667888888899999999999 9999999999994     


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                          .+..++.|.+||+++|+||..
T Consensus       305 ----~~~l~~~A~~~g~~~a~~i~~  325 (446)
T TIGR01424       305 ----RINLTPVAIMEATCFANTEFG  325 (446)
T ss_pred             ----CccchhHHHHHHHHHHHHHhc
Confidence                266889999999999999863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.91  E-value=2.5e-23  Score=194.40  Aligned_cols=152  Identities=27%  Similarity=0.452  Sum_probs=133.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..|++++              .+|+++++. +++|.+++++++.+.+.|+++||+++++ +|
T Consensus       171 ~~~~vvVIGgG~ig~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v  236 (466)
T PRK07818        171 LPKSIVIAGAGAIGMEFAYVLKNYG--------------VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKV  236 (466)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence            4579999999999999999999887              899999987 8999999999999999999999999999 89


Q ss_pred             EEEeCC--e--EEEc--CC--cEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           91 KDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~~~--~--v~~~--~g--~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      ++++++  .  +.+.  +|  +++++|.|++++|.+|+..   +++.+++++++|++.||+++|+ +.|+|||+|||+. 
T Consensus       237 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~-  314 (466)
T PRK07818        237 ESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTA-  314 (466)
T ss_pred             EEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCC-
Confidence            999754  2  3443  56  4799999999999999952   5677888888899999999999 9999999999984 


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              .+++++.|..||+++|+||..
T Consensus       315 --------~~~l~~~A~~~g~~aa~~i~g  335 (466)
T PRK07818        315 --------KLQLAHVAEAQGVVAAETIAG  335 (466)
T ss_pred             --------CcccHhHHHHHHHHHHHHHcC
Confidence                    267899999999999999863

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.91  E-value=2.8e-23  Score=204.56  Aligned_cols=156  Identities=24%  Similarity=0.405  Sum_probs=137.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|++++              .+|++++.. .+++ .+++..++.+.+.|+++||+++++ .
T Consensus       144 ~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~  209 (847)
T PRK14989        144 RSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKN  209 (847)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCe
Confidence            5679999999999999999999887              899999997 6776 589999999999999999999999 7


Q ss_pred             eEEEeCC------eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           90 VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        90 V~~v~~~------~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      +++|.++      .+.+++|+++++|.||+++|.+|++ +.++++++++++|+|.||+++|+ +.|+|||+|||+.+.+ 
T Consensus       210 v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~-  287 (847)
T PRK14989        210 TLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQT-SDPDIYAIGECASWNN-  287 (847)
T ss_pred             EEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcC-CCCCEEEeecceeEcC-
Confidence            9998642      4677899999999999999999995 66778999888999999999999 8999999999997632 


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                          .....+..|.+||+++|+||..
T Consensus       288 ----~~~gl~~~a~~~a~vaa~~i~g  309 (847)
T PRK14989        288 ----RVFGLVAPGYKMAQVAVDHLLG  309 (847)
T ss_pred             ----cccccHHHHHHHHHHHHHHhcC
Confidence                2345778899999999999863

>PRK06116 glutathione reductase; Validated

Probab=99.91  E-value=4.4e-23  Score=192.02  Aligned_cols=152  Identities=30%  Similarity=0.456  Sum_probs=134.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++|+|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       166 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V  231 (450)
T PRK06116        166 LPKRVAVVGAGYIAVEFAGVLNGLG--------------SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVP  231 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEE
Confidence            4579999999999999999999877              899999987 7889999999999999999999999999 89


Q ss_pred             EEEeC--C---eEEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           91 KDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        91 ~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      ++++.  +   .+.+.+|+++++|.||+|+|.+|+..   ++.++++.+++|++.||+++|+ +.|+|||+|||+..   
T Consensus       232 ~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---  307 (450)
T PRK06116        232 KAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGR---  307 (450)
T ss_pred             EEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCC---
Confidence            99964  2   35667888999999999999999942   5667888888899999999998 99999999999841   


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                            ++.++.|.+||+.+|+||..
T Consensus       308 ------~~~~~~A~~~g~~aa~~i~g  327 (450)
T PRK06116        308 ------VELTPVAIAAGRRLSERLFN  327 (450)
T ss_pred             ------cCcHHHHHHHHHHHHHHHhC
Confidence                  66789999999999999863

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.91  E-value=4.1e-23  Score=192.78  Aligned_cols=151  Identities=25%  Similarity=0.423  Sum_probs=134.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..|+.++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v  239 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALG--------------VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEV  239 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEE
Confidence            4689999999999999999999887              899999997 8999999999999999999999999999 89


Q ss_pred             EEEe--CCe--EEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVD--SQK--LILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~--~~~--v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++  ++.  +++.+|+++++|.|++|+|.+|+.-   +++++++.+++|++.||+++|+ +.|+|||+|||+..    
T Consensus       240 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~----  314 (461)
T PRK05249        240 EKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF----  314 (461)
T ss_pred             EEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCC----
Confidence            8886  333  4556788999999999999999942   4667888888899999999998 89999999999842    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                           |+.++.|..||+++|.||.
T Consensus       315 -----~~~~~~A~~~g~~aa~~i~  333 (461)
T PRK05249        315 -----PSLASASMDQGRIAAQHAV  333 (461)
T ss_pred             -----cccHhHHHHHHHHHHHHHc
Confidence                 6789999999999999986

>PRK06370 mercuric reductase; Validated

Probab=99.90  E-value=1.2e-22  Score=189.76  Aligned_cols=152  Identities=24%  Similarity=0.390  Sum_probs=132.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++|+|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       170 ~~~~vvVIGgG~~g~E~A~~l~~~G--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V  235 (463)
T PRK06370        170 LPEHLVIIGGGYIGLEFAQMFRRFG--------------SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAEC  235 (463)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999887              899999997 7889999999999999999999999999 89


Q ss_pred             EEEeCC--e--EEEc---CCcEEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQ--K--LILN---DGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~--~--v~~~---~g~~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      .+++++  .  +.+.   +++++++|.||+|+|.+|+.  + +++.+++++++|++.||+++|+ +.|+|||+|||+.. 
T Consensus       236 ~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~-  313 (463)
T PRK06370        236 IRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGR-  313 (463)
T ss_pred             EEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCC-
Confidence            999753  2  3332   34579999999999999994  3 5667888888899999999999 99999999999852 


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              +..++.|..||+++|+||..
T Consensus       314 --------~~~~~~A~~~g~~aa~ni~~  333 (463)
T PRK06370        314 --------GAFTHTAYNDARIVAANLLD  333 (463)
T ss_pred             --------cccHHHHHHHHHHHHHHHhC
Confidence                    66889999999999999864

>PRK14727 putative mercuric reductase; Provisional

Probab=99.90  E-value=7.1e-23  Score=191.87  Aligned_cols=152  Identities=21%  Similarity=0.293  Sum_probs=131.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .+++++|||||++|+|+|..|+.++              .+|+++++..+++.+++++.+.+.+.|++.||+++++ +|+
T Consensus       187 ~~k~vvVIGgG~iG~E~A~~l~~~G--------------~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~  252 (479)
T PRK14727        187 LPASLTVIGSSVVAAEIAQAYARLG--------------SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQAS  252 (479)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEE
Confidence            3589999999999999999999887              8999999888888899999999999999999999999 888


Q ss_pred             EEeC--CeEEE-cCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375           92 DVDS--QKLIL-NDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK  165 (283)
Q Consensus        92 ~v~~--~~v~~-~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~  165 (283)
                      +++.  +.+.+ .++.++++|.+|+|+|..|+..   ++..+++.+++|++.||+++|+ +.|+|||+|||+..      
T Consensus       253 ~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~------  325 (479)
T PRK14727        253 LVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDL------  325 (479)
T ss_pred             EEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCc------
Confidence            8863  33332 2334699999999999999953   4566888888899999999999 99999999999953      


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHH
Q 023375          166 TVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                         |..++.|..||+.+|.||..
T Consensus       326 ---~~~~~~A~~~G~~aa~~i~g  345 (479)
T PRK14727        326 ---PQFVYVAAAAGSRAGINMTG  345 (479)
T ss_pred             ---chhhhHHHHHHHHHHHHHcC
Confidence               66788999999999999863

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.90  E-value=1.2e-22  Score=190.17  Aligned_cols=153  Identities=24%  Similarity=0.325  Sum_probs=131.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .+++++|||||++|+|+|..|++++              .+|+++++..+++.+++++++.+.+.|++.||+++++ .++
T Consensus       179 ~~~~vvIIGgG~iG~E~A~~l~~~G--------------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~  244 (484)
T TIGR01438       179 CPGKTLVVGASYVALECAGFLAGIG--------------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPI  244 (484)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhC--------------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEE
Confidence            4578999999999999999999887              8999999878889999999999999999999999999 777


Q ss_pred             EEeC--C--eEEEcCC---cEEEeeEEEEcCCCCCch-h--hhccCCCCCC-CCccccCCCcccCCCCCEEEeccccccC
Q 023375           92 DVDS--Q--KLILNDG---TEVPYGLLVWSTGVGPST-L--VKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        92 ~v~~--~--~v~~~~g---~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~-~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      +++.  +  .+++.++   +++++|.|+|++|.+|+. .  +++.++++++ +|+|.||+++|+ +.|+|||+|||+.. 
T Consensus       245 ~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~-  322 (484)
T TIGR01438       245 KVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILED-  322 (484)
T ss_pred             EEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecCC-
Confidence            7763  2  3555555   379999999999999995 2  4567777765 489999999998 89999999999952 


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                             .+..++.|.+||+++|+||..
T Consensus       323 -------~~~l~~~A~~~g~~aa~~i~~  343 (484)
T TIGR01438       323 -------KQELTPVAIQAGRLLAQRLFS  343 (484)
T ss_pred             -------CccchHHHHHHHHHHHHHHhc
Confidence                   266789999999999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.90  E-value=9e-23  Score=185.80  Aligned_cols=155  Identities=24%  Similarity=0.393  Sum_probs=132.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ...++|+|||||++|+|+|..|++.+              .+|+++++. .+++. +++.+...+.+.|++.||+++.+ 
T Consensus       139 ~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~  204 (377)
T PRK04965        139 RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKS  204 (377)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECC
Confidence            35689999999999999999999876              899999987 67765 58889999999999999999998 


Q ss_pred             ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           89 IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        89 ~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      +|++++.+    .+.+.+|+++++|.+|+|+|.+|+ .+.+.++++.+ +| +.||+++|+ +.|+|||+|||+.+..  
T Consensus       205 ~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~--  279 (377)
T PRK04965        205 QLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYLQT-SAPDIYALGDCAEING--  279 (377)
T ss_pred             eEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCccc-CCCCEEEeeecEeECC--
Confidence            89999764    367788999999999999999998 46677888775 35 999999999 8999999999998632  


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                        .. .+..+.|.+||+++|+||..
T Consensus       280 --~~-~~~~~~a~~~g~~~a~n~~g  301 (377)
T PRK04965        280 --QV-LPFLQPIQLSAMALAKNLLG  301 (377)
T ss_pred             --ce-eehHHHHHHHHHHHHHHhcC
Confidence              12 23567799999999999864

>PLN02546 glutathione reductase

Probab=99.90  E-value=6e-23  Score=194.31  Aligned_cols=153  Identities=27%  Similarity=0.429  Sum_probs=132.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...++|+|||||++|+|+|..|+.++              .+|+++++. .+++.+++++++.+.+.|+++||+++++ +
T Consensus       250 ~~~k~V~VIGgG~iGvE~A~~L~~~g--------------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~  315 (558)
T PLN02546        250 SKPEKIAIVGGGYIALEFAGIFNGLK--------------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEES  315 (558)
T ss_pred             ccCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCE
Confidence            35689999999999999999999877              899999987 7899999999999999999999999999 7


Q ss_pred             eEEEeC---CeE--EEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           90 VKDVDS---QKL--ILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        90 V~~v~~---~~v--~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      +.+++.   +.+  .+.+++...+|.|||++|.+|+..   +++++++++++|+|.||+++|+ +.|+|||+|||+..  
T Consensus       316 v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~--  392 (558)
T PLN02546        316 PQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDR--  392 (558)
T ss_pred             EEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCC--
Confidence            888863   223  334444456899999999999952   4778888888899999999998 99999999999952  


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                             +..++.|..||+++|+||..
T Consensus       393 -------~~l~~~A~~~g~~~a~~i~g  412 (558)
T PLN02546        393 -------INLTPVALMEGGALAKTLFG  412 (558)
T ss_pred             -------cccHHHHHHHHHHHHHHHcC
Confidence                   66788999999999999863

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.90  E-value=6.1e-23  Score=191.69  Aligned_cols=151  Identities=30%  Similarity=0.474  Sum_probs=132.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|
T Consensus       171 ~~~~vvVvGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V  236 (462)
T PRK06416        171 VPKSLVVIGGGYIGVEFASAYASLG--------------AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKA  236 (462)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            4579999999999999999999876              899999997 8899999999999999999999999999 89


Q ss_pred             EEEeCC--e--EEEcCC---cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQ--K--LILNDG---TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~--~--v~~~~g---~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      ++++++  .  +.+.++   +++++|.+|+|+|.+|+. +  +++.+++.+ +|++.||+++|+ +.|+|||+|||+.  
T Consensus       237 ~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~--  312 (462)
T PRK06416        237 KKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVG--  312 (462)
T ss_pred             EEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCC--
Confidence            999754  3  344555   679999999999999994 3  356778777 799999999998 8999999999994  


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                             .|++++.|.+||+++|+||..
T Consensus       313 -------~~~~~~~A~~~g~~aa~ni~~  333 (462)
T PRK06416        313 -------GPMLAHKASAEGIIAAEAIAG  333 (462)
T ss_pred             -------CcchHHHHHHHHHHHHHHHcC
Confidence                   267899999999999999964

>TIGR02053 MerA mercuric reductase

Probab=99.90  E-value=1.5e-22  Score=189.05  Aligned_cols=152  Identities=26%  Similarity=0.350  Sum_probs=132.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. +++|.+++++...+.+.|++.||+++++ +|
T Consensus       165 ~~~~vvIIGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V  230 (463)
T TIGR02053       165 IPESLAVIGGGAIGVELAQAFARLG--------------SEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQV  230 (463)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEE
Confidence            3589999999999999999999887              899999997 8999999999999999999999999999 79


Q ss_pred             EEEeCC----eEEEc---CCcEEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQ----KLILN---DGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~----~v~~~---~g~~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      ++++.+    .+++.   +++++++|.||+|+|.+|+.  + ++..+++.+++|++.||+++|+ +.|+|||+|||+.. 
T Consensus       231 ~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~-  308 (463)
T TIGR02053       231 KAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGG-  308 (463)
T ss_pred             EEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCC-
Confidence            998653    23443   23679999999999999994  3 5667788888899999999999 99999999999952 


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              +.+++.|..||+++|.||..
T Consensus       309 --------~~~~~~A~~~g~~aa~ni~~  328 (463)
T TIGR02053       309 --------LQLEYVAAKEGVVAAENALG  328 (463)
T ss_pred             --------cccHhHHHHHHHHHHHHhcC
Confidence                    67899999999999999863

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.90  E-value=1.7e-22  Score=188.65  Aligned_cols=151  Identities=23%  Similarity=0.318  Sum_probs=129.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..+++++              .+|+++++. +++|.+++++.+.+.+.|++.||+++++ +|
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G--------------~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V  238 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLG--------------AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKV  238 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEE
Confidence            4689999999999999999999887              899999987 8999999999999999999999999999 89


Q ss_pred             EEEeCC--eE--EEc---C--CcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           91 KDVDSQ--KL--ILN---D--GTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        91 ~~v~~~--~v--~~~---~--g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      ++++++  .+  .+.   +  ++++++|.|++++|.+|+.-   ++..+++.+++| +.||+++|+ +.|+|||+|||+.
T Consensus       239 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~  316 (466)
T PRK06115        239 TGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTS  316 (466)
T ss_pred             EEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCC
Confidence            999743  33  332   2  35799999999999999842   345567666666 678999998 9999999999995


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .         |++++.|.+||+++|+||..
T Consensus       317 ~---------~~la~~A~~~g~~aa~~i~~  337 (466)
T PRK06115        317 G---------PMLAHKAEDEAVACIERIAG  337 (466)
T ss_pred             C---------cccHHHHHHHHHHHHHHHcC
Confidence            2         67999999999999999863

>TIGR03452 mycothione_red mycothione reductase

Probab=99.90  E-value=1.1e-22  Score=189.32  Aligned_cols=151  Identities=28%  Similarity=0.391  Sum_probs=130.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..|+.++              .+|++|++. .+++.+++++.+.+.+.+ +.||+++++ +|
T Consensus       168 ~~k~vvVIGgG~ig~E~A~~l~~~G--------------~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V  232 (452)
T TIGR03452       168 LPESLVIVGGGYIAAEFAHVFSALG--------------TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNV  232 (452)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEE
Confidence            4689999999999999999999887              899999997 788889999988887755 468999998 89


Q ss_pred             EEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDS--QK--LILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.  +.  +++.+|+++++|.+++++|.+|+. +  .+..+++++++|++.||+++|+ +.|+|||+|||+..    
T Consensus       233 ~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~----  307 (452)
T TIGR03452       233 TAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSP----  307 (452)
T ss_pred             EEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCc----
Confidence            99874  23  455678899999999999999995 3  3556888888899999999997 99999999999952    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                           ++.++.|.+||+++|+||..
T Consensus       308 -----~~l~~~A~~~g~~~a~ni~~  327 (452)
T TIGR03452       308 -----YQLKHVANAEARVVKHNLLH  327 (452)
T ss_pred             -----ccChhHHHHHHHHHHHHhcC
Confidence                 67889999999999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.90  E-value=3.4e-22  Score=187.91  Aligned_cols=152  Identities=22%  Similarity=0.350  Sum_probs=131.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .+++++|||||++|+|+|..|+.++              .+|+++++..+++.+++++++.+.+.|++.||+++++ .++
T Consensus       181 ~~~~vvIIGgG~iG~E~A~~l~~~G--------------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~  246 (499)
T PTZ00052        181 DPGKTLIVGASYIGLETAGFLNELG--------------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPI  246 (499)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEE
Confidence            4579999999999999999999887              8999999877789999999999999999999999999 787


Q ss_pred             EEeC--C--eEEEcCCcEEEeeEEEEcCCCCCch-hh--hccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375           92 DVDS--Q--KLILNDGTEVPYGLLVWSTGVGPST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG  164 (283)
Q Consensus        92 ~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~~-~~--~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~  164 (283)
                      +++.  +  .+.+.+|+++++|.|+|++|.+|+. ++  +.++++++++|++.+++. ++ +.|+|||+|||+.      
T Consensus       247 ~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~------  318 (499)
T PTZ00052        247 NIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE------  318 (499)
T ss_pred             EEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC------
Confidence            7753  2  3566788899999999999999994 33  567888888898777776 77 8999999999984      


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                        ..|.+++.|.+||+++|+||..
T Consensus       319 --~~~~l~~~A~~~g~~aa~ni~g  340 (499)
T PTZ00052        319 --GRPELTPVAIKAGILLARRLFK  340 (499)
T ss_pred             --CCcccHHHHHHHHHHHHHHHhC
Confidence              1367899999999999999963

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.90  E-value=1.3e-22  Score=189.70  Aligned_cols=151  Identities=20%  Similarity=0.323  Sum_probs=131.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..|++++              .+|++|++. +++|.+++++++.+.+.|++. |+++++ +|
T Consensus       173 ~~~~vvIiGgG~iG~E~A~~l~~~G--------------~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v  237 (471)
T PRK06467        173 VPKRLLVMGGGIIGLEMGTVYHRLG--------------SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKV  237 (471)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEE
Confidence            4579999999999999999999887              899999997 899999999999999999998 999999 89


Q ss_pred             EEEeC--Ce--EEEcC--C--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           91 KDVDS--QK--LILND--G--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~~--~~--v~~~~--g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      ++++.  +.  +++.+  +  +++++|.|||++|.+|+.   .....+++++++|++.||+++|+ +.|+|||+|||+. 
T Consensus       238 ~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~-  315 (471)
T PRK06467        238 TAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVG-  315 (471)
T ss_pred             EEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcC-
Confidence            88863  33  34433  2  469999999999999994   24567888888999999999999 9999999999984 


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              .|..++.|.+||+++|+||..
T Consensus       316 --------~~~la~~A~~eG~~aa~~i~g  336 (471)
T PRK06467        316 --------QPMLAHKGVHEGHVAAEVIAG  336 (471)
T ss_pred             --------CcccHHHHHHHHHHHHHHHcC
Confidence                    267899999999999999863

>PRK13748 putative mercuric reductase; Provisional

Probab=99.90  E-value=2.5e-22  Score=191.83  Aligned_cols=151  Identities=21%  Similarity=0.325  Sum_probs=131.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .+++++|||||++|+|+|..|++++              .+|+++++..+++.+++++++.+.+.|++.||+++++ +|+
T Consensus       269 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~  334 (561)
T PRK13748        269 IPERLAVIGSSVVALELAQAFARLG--------------SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQAS  334 (561)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            4589999999999999999999887              8999999888888899999999999999999999999 898


Q ss_pred             EEeCC--eEEEc-CCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375           92 DVDSQ--KLILN-DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK  165 (283)
Q Consensus        92 ~v~~~--~v~~~-~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~  165 (283)
                      +++.+  .+.+. ++.++++|.|++++|.+|+. +  +++.+++.+++|++.||+++|+ +.|+|||+|||+..      
T Consensus       335 ~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~------  407 (561)
T PRK13748        335 QVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQ------  407 (561)
T ss_pred             EEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCC------
Confidence            88643  33322 33479999999999999995 2  4667888888899999999999 99999999999952      


Q ss_pred             cCCCcchHHHHHHHHHHHHHHH
Q 023375          166 TVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                         |..++.|..||+++|.||.
T Consensus       408 ---~~~~~~A~~~g~~aa~~i~  426 (561)
T PRK13748        408 ---PQFVYVAAAAGTRAAINMT  426 (561)
T ss_pred             ---ccchhHHHHHHHHHHHHHc
Confidence               6778899999999999985

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.89  E-value=3.7e-22  Score=186.28  Aligned_cols=152  Identities=27%  Similarity=0.373  Sum_probs=132.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..+++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|+++ |+++++ +
T Consensus       167 ~~~k~v~VIGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~  231 (460)
T PRK06292        167 KLPKSLAVIGGGVIGLELGQALSRLG--------------VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAK  231 (460)
T ss_pred             ccCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCE
Confidence            35689999999999999999999887              899999997 789999999999999999999 999999 8


Q ss_pred             eEEEeCC---eEEE--cCC--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           90 VKDVDSQ---KLIL--NDG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        90 V~~v~~~---~v~~--~~g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      |++++.+   .+++  .++  +++++|.+++++|.+|+.   .++.++++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus       232 v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~  310 (460)
T PRK06292        232 VTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGK  310 (460)
T ss_pred             EEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCC
Confidence            9998643   3553  233  579999999999999994   24667888888899999999999 99999999999952


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                               +++++.|..||+++|.||..
T Consensus       311 ---------~~~~~~A~~qg~~aa~~i~~  330 (460)
T PRK06292        311 ---------PPLLHEAADEGRIAAENAAG  330 (460)
T ss_pred             ---------ccchhHHHHHHHHHHHHhcC
Confidence                     66789999999999999964

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.89  E-value=5.2e-22  Score=185.38  Aligned_cols=152  Identities=28%  Similarity=0.436  Sum_probs=133.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++|+|||||++|+|+|..|++.+              .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v  234 (461)
T TIGR01350       169 VPESLVIIGGGVIGIEFASIFASLG--------------SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKV  234 (461)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            4589999999999999999999876              899999997 7899999999999999999999999999 89


Q ss_pred             EEEeC--CeE--EEcCC--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           91 KDVDS--QKL--ILNDG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        91 ~~v~~--~~v--~~~~g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      ++++.  +.+  .+.+|  +++++|.+|+|+|.+|+.   .+++++++.+++|++.||+++|+ +.|+|||+|||+..  
T Consensus       235 ~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~--  311 (461)
T TIGR01350       235 TAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGG--  311 (461)
T ss_pred             EEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCC--
Confidence            98863  344  34456  579999999999999994   36777888888899999999999 89999999999852  


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                             +++++.|..||+.+|+||..
T Consensus       312 -------~~~~~~A~~~g~~aa~~i~~  331 (461)
T TIGR01350       312 -------PMLAHVASHEGIVAAENIAG  331 (461)
T ss_pred             -------cccHHHHHHHHHHHHHHHcC
Confidence                   67899999999999999864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.89  E-value=3.3e-22  Score=185.71  Aligned_cols=152  Identities=22%  Similarity=0.362  Sum_probs=131.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...++++|||||++|+|+|..|++++              .+|++++++ .++|.+++++.+.+.+.|++.||+++++ +
T Consensus       156 ~~~~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~  221 (441)
T PRK08010        156 ELPGHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAH  221 (441)
T ss_pred             ccCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCE
Confidence            34579999999999999999999887              899999997 7899999999999999999999999999 8


Q ss_pred             eEEEeCC--eEEEc-CCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           90 VKDVDSQ--KLILN-DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        90 V~~v~~~--~v~~~-~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      |++++.+  .+.+. ++.++++|.+++|+|.+|+. +  .++++++++++|++.||+++|+ +.|+|||+|||+..    
T Consensus       222 v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~----  296 (441)
T PRK08010        222 VERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGG----  296 (441)
T ss_pred             EEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCC----
Confidence            9998743  34332 23469999999999999995 2  4567888888899999999999 89999999999952    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                           ++.++.|..||+.+++||.
T Consensus       297 -----~~~~~~a~~~~~~~~~~~~  315 (441)
T PRK08010        297 -----LQFTYISLDDYRIVRDELL  315 (441)
T ss_pred             -----ccchhHHHHHHHHHHHHHc
Confidence                 6788999999999999985

>PRK14694 putative mercuric reductase; Provisional

Probab=99.89  E-value=1.3e-21  Score=182.84  Aligned_cols=150  Identities=23%  Similarity=0.383  Sum_probs=128.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++.++++.+++++.+.+.+.|++.||+++++ +|+
T Consensus       177 ~~~~vvViG~G~~G~E~A~~l~~~g--------------~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~  242 (468)
T PRK14694        177 IPERLLVIGASVVALELAQAFARLG--------------SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQAS  242 (468)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence            4579999999999999999999887              8999999888889999999999999999999999999 898


Q ss_pred             EEeCC--eEEE-cCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375           92 DVDSQ--KLIL-NDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK  165 (283)
Q Consensus        92 ~v~~~--~v~~-~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~  165 (283)
                      +++.+  .+.+ .++.++++|.||+++|.+|+..   +++++++. .+|++.||+++|+ +.|+|||+|||+..      
T Consensus       243 ~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~------  314 (468)
T PRK14694        243 EVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ------  314 (468)
T ss_pred             EEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC------
Confidence            88653  2322 2345799999999999999953   24567765 4789999999999 89999999999952      


Q ss_pred             cCCCcchHHHHHHHHHHHHHHH
Q 023375          166 TVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                         |..++.|..||+++|.||.
T Consensus       315 ---~~~~~~A~~~G~~aa~~i~  333 (468)
T PRK14694        315 ---PQFVYVAAAGGSRAAINMT  333 (468)
T ss_pred             ---cccHHHHHHHHHHHHHHhc
Confidence               6778899999999999985

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.89  E-value=5.1e-22  Score=185.93  Aligned_cols=152  Identities=25%  Similarity=0.382  Sum_probs=132.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++|+|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v  247 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSVWRRLG--------------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKI  247 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEE
Confidence            4589999999999999999999887              899999997 7888899999999999999999999999 89


Q ss_pred             EEEeCC--e--EEEcC--C--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           91 KDVDSQ--K--LILND--G--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~~~--~--v~~~~--g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      ++++.+  .  +.+.+  |  +++++|.+++++|.+|+.   ..+.++++++++|++.||+++|+ +.|+|||+|||+..
T Consensus       248 ~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~~  326 (475)
T PRK06327        248 GEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVRG  326 (475)
T ss_pred             EEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccCC
Confidence            999753  3  44444  3  479999999999999994   24567888888899999999998 89999999999852


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                               |+.++.|..||+.+|+||..
T Consensus       327 ---------~~~~~~A~~~G~~aa~~i~g  346 (475)
T PRK06327        327 ---------PMLAHKAEEEGVAVAERIAG  346 (475)
T ss_pred             ---------cchHHHHHHHHHHHHHHHcC
Confidence                     67899999999999999863

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.88  E-value=8.4e-22  Score=193.94  Aligned_cols=154  Identities=21%  Similarity=0.366  Sum_probs=132.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|++.+              .+|++++.. .+++ .+++.....+.+.|+++||+++++ .
T Consensus       139 ~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~  204 (785)
T TIGR02374       139 RFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKD  204 (785)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCc
Confidence            5689999999999999999999887              899999987 6765 489999999999999999999999 7


Q ss_pred             eEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375           90 VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG  164 (283)
Q Consensus        90 V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~  164 (283)
                      ++++.++    .|+++||+++++|+||+++|.+|++ +...++++.+  |.+.||+++|+ +.|+|||+|||+.+..   
T Consensus       205 v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~~T-s~p~IyA~GD~a~~~~---  278 (785)
T TIGR02374       205 TVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSMQT-SDPDIYAVGECAEHNG---  278 (785)
T ss_pred             eEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCccc-CCCCEEEeeecceeCC---
Confidence            8888654    4778899999999999999999994 6667788765  66999999999 8999999999997632   


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                        .....+..|.+||+++|.||..
T Consensus       279 --~~~gl~~~a~~qa~vaA~ni~g  300 (785)
T TIGR02374       279 --RVYGLVAPLYEQAKVLADHICG  300 (785)
T ss_pred             --cccccHHHHHHHHHHHHHHhcC
Confidence              2234567789999999999963

>PTZ00058 glutathione reductase; Provisional

Probab=99.88  E-value=7.9e-22  Score=186.65  Aligned_cols=159  Identities=23%  Similarity=0.417  Sum_probs=130.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      +++++|||||++|+|+|..|+.++              .+|+++++. ++++.+++++.+.+.+.|++.||+++++ .|.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~  302 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVE  302 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            789999999999999999999887              899999997 7899999999999999999999999999 799


Q ss_pred             EEeCC---e--EEEcCC-cEEEeeEEEEcCCCCCch-hh--hccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc-
Q 023375           92 DVDSQ---K--LILNDG-TEVPYGLLVWSTGVGPST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE-  161 (283)
Q Consensus        92 ~v~~~---~--v~~~~g-~~i~~d~vi~a~G~~~~~-~~--~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~-  161 (283)
                      +++++   .  +.+.++ +++++|.|++++|.+|+. .+  +..++. +++|+|.||+++|| +.|+|||+|||+.... 
T Consensus       303 ~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~~~  380 (561)
T PTZ00058        303 EIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQRT-SVKHIYAVGDCCMVKKN  380 (561)
T ss_pred             EEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCCcc-CCCCEEEeEeccCcccc
Confidence            98753   2  333344 579999999999999994 22  222332 45789999999998 9999999999997321 


Q ss_pred             -----------------------CCCCcC-CCcchHHHHHHHHHHHHHHHH
Q 023375          162 -----------------------STGKTV-LPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       162 -----------------------~~~~~~-~p~~~~~A~~qg~~~a~~i~~  188 (283)
                                             ..+... .++.++.|..||+++|+||..
T Consensus       381 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g  431 (561)
T PTZ00058        381 QEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG  431 (561)
T ss_pred             ccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence                                   011111 378899999999999999963

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.88  E-value=1.4e-21  Score=182.30  Aligned_cols=150  Identities=27%  Similarity=0.430  Sum_probs=128.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++++|||||++|+|+|..+.+++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       169 ~~~~vvIIGgG~iG~E~A~~l~~~g--------------~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V  234 (458)
T PRK06912        169 IPSSLLIVGGGVIGCEFASIYSRLG--------------TKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAAL  234 (458)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEE
Confidence            3579999999999999999998876              899999997 8899999999999999999999999999 89


Q ss_pred             EEEeCC--eEEEc-CC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           91 KDVDSQ--KLILN-DG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        91 ~~v~~~--~v~~~-~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      ++++.+  .+.+. +|  +++++|.|++|+|.+|+. .  ++..+++.+++| +.||+++|+ +.|+|||+|||+.    
T Consensus       235 ~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~----  308 (458)
T PRK06912        235 KGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIG----  308 (458)
T ss_pred             EEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCC----
Confidence            998754  34443 34  369999999999999994 2  345567666666 999999998 8999999999984    


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                           .+++++.|.+||+++|.|+.
T Consensus       309 -----~~~la~~A~~~g~~aa~~~~  328 (458)
T PRK06912        309 -----GIQLAHVAFHEGTTAALHAS  328 (458)
T ss_pred             -----CcccHHHHHHHHHHHHHHHc
Confidence                 27789999999999999985

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.87  E-value=2.6e-21  Score=185.60  Aligned_cols=152  Identities=24%  Similarity=0.357  Sum_probs=127.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHH-HhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l-~~~gV~v~~~-~   89 (283)
                      .+++|+|||||++|+|+|..|+.++              .+|++|++. .++|.+++++.+.+.+.+ ++.||+++++ +
T Consensus       311 lpk~VvIVGgG~iGvE~A~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~  376 (659)
T PTZ00153        311 LQNYMGIVGMGIIGLEFMDIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTL  376 (659)
T ss_pred             cCCceEEECCCHHHHHHHHHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCE
Confidence            3579999999999999999999887              899999997 899999999999999876 6799999999 8


Q ss_pred             eEEEeCCe----EEE--cC-------C--------cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccC
Q 023375           90 VKDVDSQK----LIL--ND-------G--------TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVP  145 (283)
Q Consensus        90 V~~v~~~~----v~~--~~-------g--------~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~  145 (283)
                      |++|+++.    +.+  .+       +        +++++|.|+||+|.+|+. .  ++..+++.+ +|+|.||++||+.
T Consensus       377 V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs  455 (659)
T PTZ00153        377 IEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVL  455 (659)
T ss_pred             EEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcC
Confidence            99997531    432  21       1        279999999999999994 2  355677665 4899999999994


Q ss_pred             C-----CCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          146 S-----VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       146 ~-----~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .     .|+|||+|||+.         .++.++.|..||+++|+||..
T Consensus       456 ~~~~~~v~~IYAiGDv~g---------~~~La~~A~~qg~~aa~ni~g  494 (659)
T PTZ00153        456 REDQEVYDNIFCIGDANG---------KQMLAHTASHQALKVVDWIEG  494 (659)
T ss_pred             CCCCCCCCCEEEEEecCC---------CccCHHHHHHHHHHHHHHHcC
Confidence            2     699999999983         267899999999999999964

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.87  E-value=4.1e-21  Score=179.78  Aligned_cols=150  Identities=31%  Similarity=0.479  Sum_probs=127.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|
T Consensus       179 ~~~~vvIIGgG~~G~E~A~~l~~~g--------------~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v  244 (472)
T PRK05976        179 LPKSLVIVGGGVIGLEWASMLADFG--------------VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKV  244 (472)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEE
Confidence            3589999999999999999999876              899999987 8899999999999999999999999999 89


Q ss_pred             EEEe---CCeE---EEcCC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           91 KDVD---SQKL---ILNDG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~---~~~v---~~~~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      ++++   .+.+   .+.+|  +++++|.+|+|+|.+|+. .  ++..++.. .+|++.||+++++ +.|+|||+|||+. 
T Consensus       245 ~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiGD~~~-  321 (472)
T PRK05976        245 LGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIGDVIG-  321 (472)
T ss_pred             EEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEeeecCC-
Confidence            9986   3433   23456  369999999999999984 2  23444544 4688999999998 7899999999984 


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                              .+++++.|.+||+++|+||.
T Consensus       322 --------~~~~~~~A~~~g~~aa~~i~  341 (472)
T PRK05976        322 --------EPQLAHVAMAEGEMAAEHIA  341 (472)
T ss_pred             --------CcccHHHHHHHHHHHHHHHc
Confidence                    16789999999999999985

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.86  E-value=9.4e-21  Score=175.82  Aligned_cols=151  Identities=24%  Similarity=0.456  Sum_probs=130.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+++|+|||||++|+|+|..|++.+              .+|+++++. .+++..++++.+.+.+.|++.||+++++ +|
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V  221 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHT  221 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            4679999999999999999999876              899999997 7889899999999999999999999999 89


Q ss_pred             EEEeCC--eEE-EcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375           91 KDVDSQ--KLI-LNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG  164 (283)
Q Consensus        91 ~~v~~~--~v~-~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~  164 (283)
                      ++++.+  .+. ..+++++++|.+|+|+|.+|+. .  +++.+++.+++|++.||+++|+ +.|+|||+|||+.      
T Consensus       222 ~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~------  294 (438)
T PRK07251        222 TEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNG------  294 (438)
T ss_pred             EEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCC------
Confidence            998754  333 3467789999999999999984 2  3345666677899999999999 8999999999984      


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                         .+..++.|..||++++.++.
T Consensus       295 ---~~~~~~~a~~~~~~~~~~~~  314 (438)
T PRK07251        295 ---GPQFTYISLDDFRIVFGYLT  314 (438)
T ss_pred             ---CcccHhHHHHHHHHHHHHHc
Confidence               26788999999999998875

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.86  E-value=1.2e-20  Score=165.93  Aligned_cols=149  Identities=27%  Similarity=0.325  Sum_probs=121.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhC-CCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~-gV~v~~~-~   89 (283)
                      .+.++|+|||+|++|+|+|.+|++.+              .+|+++++...+. .    ...+.+.+++. ||+++++ +
T Consensus       139 ~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~-~----~~~~~~~l~~~~gv~~~~~~~  199 (300)
T TIGR01292       139 FKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFR-A----EKILLDRLRKNPNIEFLWNST  199 (300)
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccC-c----CHHHHHHHHhCCCeEEEeccE
Confidence            35679999999999999999998876              8999999873222 1    23455667777 9999998 8


Q ss_pred             eEEEeCCe----EEEc---CC--cEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           90 VKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        90 V~~v~~~~----v~~~---~g--~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      +++++++.    +++.   ++  +++++|++|||+|.+|+. +++.+ ++.+++|++.||+++++ ++|+||++|||+..
T Consensus       200 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~  277 (300)
T TIGR01292       200 VKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRT-SVPGVFAAGDVRDK  277 (300)
T ss_pred             EEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCcc-CCCCEEEeecccCc
Confidence            99997652    4443   23  579999999999999984 66666 66777899999999998 99999999999962


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                              .++++..|+.||+.+|.+|.+.
T Consensus       278 --------~~~~~~~A~~~g~~aa~~i~~~  299 (300)
T TIGR01292       278 --------GYRQAVTAAGDGCIAALSAERY  299 (300)
T ss_pred             --------chhhhhhhhhhHHHHHHHHHhh
Confidence                    2678899999999999998764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK10262 thioredoxin reductase; Provisional

Probab=99.84  E-value=3.1e-20  Score=165.53  Aligned_cols=155  Identities=22%  Similarity=0.219  Sum_probs=125.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ...++|+|||+|++|+|+|..|++++              .+|+++++...++ .++.+.+.+.+.|++.||+++++ .+
T Consensus       144 ~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v  208 (321)
T PRK10262        144 YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVENGNIILHTNRTL  208 (321)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhhccCCCeEEEeCCEE
Confidence            45789999999999999999999887              8999999874232 35667888889999999999998 89


Q ss_pred             EEEeCC-----eEEEcCC------cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCC-----CcccCCCCCEEEec
Q 023375           91 KDVDSQ-----KLILNDG------TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE-----WLRVPSVQDVFAVG  154 (283)
Q Consensus        91 ~~v~~~-----~v~~~~g------~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~-----~l~~~~~~~VfaiG  154 (283)
                      ++++++     .|++.++      +++++|.|+|++|.+|+..+.+.++.. ++|++.||+     ++++ +.|+|||+|
T Consensus       209 ~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~G  286 (321)
T PRK10262        209 EEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQT-SIPGVFAAG  286 (321)
T ss_pred             EEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccc-cCCEEEECCCCccccccc-CCCCEEECe
Confidence            999775     3565432      479999999999999996444445655 358899997     6677 999999999


Q ss_pred             cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ||+..        ..++...|+.+|..||..|...+.
T Consensus       287 D~~~~--------~~~~~~~A~~~g~~Aa~~~~~~l~  315 (321)
T PRK10262        287 DVMDH--------IYRQAITSAGTGCMAALDAERYLD  315 (321)
T ss_pred             eccCC--------CcceEEEEehhHHHHHHHHHHHHH
Confidence            99952        145555699999999999998885

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.84  E-value=5.8e-20  Score=170.81  Aligned_cols=148  Identities=22%  Similarity=0.209  Sum_probs=118.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||.+|+|+|..+.+++              .+|+++++. . -++..     ....+.+++.||+++++ .
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~~G--------------~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~  331 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALRLG--------------AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQ  331 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccC
Confidence            4589999999999999999999887              789999986 3 23322     22335678899999988 7


Q ss_pred             eEEEeCC------eEEEc---------CC-----------cEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCc
Q 023375           90 VKDVDSQ------KLILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWL  142 (283)
Q Consensus        90 V~~v~~~------~v~~~---------~g-----------~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l  142 (283)
                      ++++..+      .|++.         +|           +++++|+||+++|..|+. +++.++++++++|++.||+++
T Consensus       332 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~  411 (449)
T TIGR01316       332 PVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQ  411 (449)
T ss_pred             cEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCC
Confidence            7777532      23332         22           269999999999999994 566678888888999999999


Q ss_pred             ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                      +| +.|+|||+|||+.-         +.++..|+.||+.+|.+|.+.
T Consensus       412 ~T-s~~~VfA~GD~~~g---------~~~v~~Ai~~G~~AA~~I~~~  448 (449)
T TIGR01316       412 RT-SIPGVFAGGDIILG---------AATVIRAMGQGKRAAKSINEY  448 (449)
T ss_pred             cc-CCCCEEEecCCCCC---------cHHHHHHHHHHHHHHHHHHhh
Confidence            98 89999999999851         668899999999999999765

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.83  E-value=5.2e-20  Score=165.07  Aligned_cols=162  Identities=22%  Similarity=0.356  Sum_probs=137.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...+|+++|||+.|+|+|.+|....              .+||+|++. ..++ -+.+.+.+.++++++++||+++++ .
T Consensus       212 ~~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~  277 (478)
T KOG1336|consen  212 LGGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTV  277 (478)
T ss_pred             cCceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecc
Confidence            4578999999999999999999775              999999997 6776 578999999999999999999999 6


Q ss_pred             eEEEeCC------eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           90 VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        90 V~~v~~~------~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      +++++.+      .|.+.||+++++|+||..+|.+|+ ++.+. +.-.+++|.|.||+.+|+ +.|||||+||+++++-+
T Consensus       278 ~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~  355 (478)
T KOG1336|consen  278 VSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLK  355 (478)
T ss_pred             eeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceee-ccCCcccccceeecccc
Confidence            8888765      478899999999999999999999 45555 666788999999999999 79999999999998755


Q ss_pred             CC-CcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          163 TG-KTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       163 ~~-~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      -. ....-..++.|..+|+.+...|+...
T Consensus       356 ~~~~~~~v~H~~~A~~~g~~av~ai~~~~  384 (478)
T KOG1336|consen  356 GYGEDRRVEHVDHARASGRQAVKAIKMAP  384 (478)
T ss_pred             cccccccchHHHHHHHHHHhhhhhhhccC
Confidence            22 12236788889999998887776543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.83  E-value=4.8e-20  Score=174.15  Aligned_cols=150  Identities=22%  Similarity=0.282  Sum_probs=120.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh-CCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK-SGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~~~-~V   90 (283)
                      ..++|+|||||++|+|+|..|+..+              .+|++++..+.+.     ....+.+.+++ .||+++++ .+
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~~l~~~~gV~i~~~~~v  411 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQDKLKSLPNVDILTSAQT  411 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHHHHhcCCCCEEEECCee
Confidence            4689999999999999999999876              8999999863221     12445666766 59999999 89


Q ss_pred             EEEeCC-----eEEEcC---C--cEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           91 KDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~~~-----~v~~~~---g--~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      +++.++     .|++.+   +  +++++|.|++++|.+|+ ++++.. ++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus       412 ~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~  489 (515)
T TIGR03140       412 TEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRT-SVPGIFAAGDVTTV  489 (515)
T ss_pred             EEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCC-CCCCEEEcccccCC
Confidence            998765     366543   2  46999999999999999 466655 77778899999999999 99999999999963


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +        .+++..|+.+|..+|.++...+.
T Consensus       490 ~--------~~~~~~A~~~G~~Aa~~i~~~~~  513 (515)
T TIGR03140       490 P--------YKQIIIAMGEGAKAALSAFDYLI  513 (515)
T ss_pred             c--------cceEEEEEccHHHHHHHHHHHHh
Confidence            1        34566899999999999987763

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.82  E-value=2.9e-19  Score=166.68  Aligned_cols=151  Identities=20%  Similarity=0.205  Sum_probs=121.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||.+|+|+|..|.+++.             .+|+++++.  ..++....     ..+.+++.||+++++ .
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~-------------~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~  333 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGA-------------ESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAA  333 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCC
Confidence            56899999999999999999988761             389999985  24554322     345678899999998 7


Q ss_pred             eEEEeCCe-----EEEc-------------------CCcEEEeeEEEEcCCCCCch-hhh-ccCCCCCCCCccccCC-Cc
Q 023375           90 VKDVDSQK-----LILN-------------------DGTEVPYGLLVWSTGVGPST-LVK-SLDLPKSPGGRIGIDE-WL  142 (283)
Q Consensus        90 V~~v~~~~-----v~~~-------------------~g~~i~~d~vi~a~G~~~~~-~~~-~~~l~~~~~g~i~Vd~-~l  142 (283)
                      +.++.++.     |++.                   +++++++|+|||++|.+|+. +.. ..+++++++|++.||+ ++
T Consensus       334 v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~  413 (457)
T PRK11749        334 PVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETG  413 (457)
T ss_pred             cEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCC
Confidence            88886542     5542                   23479999999999999994 333 4577788889999998 77


Q ss_pred             ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++ +.|+|||+|||+.-         ++++..|+.||+.+|.+|.+.+.
T Consensus       414 ~T-s~~~VfA~GD~~~~---------~~~~~~A~~~G~~aA~~I~~~l~  452 (457)
T PRK11749        414 RT-SLPGVFAGGDIVTG---------AATVVWAVGDGKDAAEAIHEYLE  452 (457)
T ss_pred             cc-CCCCEEEeCCcCCC---------chHHHHHHHHHHHHHHHHHHHHh
Confidence            77 89999999999941         56889999999999999999886

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.82  E-value=1.8e-19  Score=162.58  Aligned_cols=151  Identities=23%  Similarity=0.208  Sum_probs=118.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .++++|||+|++|+|+|.+|...+              . +|+++++......   .......+.|+++||+++++ .++
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~~~l~~~gi~i~~~~~v~  234 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEIERLIARGVEFLELVTPV  234 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHHHHHHHcCCEEeeccCce
Confidence            479999999999999999998765              5 4999987532211   11133455689999999998 788


Q ss_pred             EEeCC-e---EEE--------------------cCCcEEEeeEEEEcCCCCCch-hhhc-cCCCCCCCCccccCCCcccC
Q 023375           92 DVDSQ-K---LIL--------------------NDGTEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDEWLRVP  145 (283)
Q Consensus        92 ~v~~~-~---v~~--------------------~~g~~i~~d~vi~a~G~~~~~-~~~~-~~l~~~~~g~i~Vd~~l~~~  145 (283)
                      +++++ .   |++                    .+++++++|.+|+++|.+|++ +... ++++++++|++.||+++++ 
T Consensus       235 ~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t-  313 (352)
T PRK12770        235 RIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMT-  313 (352)
T ss_pred             eeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCccc-
Confidence            88653 2   222                    123579999999999999995 4444 6787888889999999998 


Q ss_pred             CCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          146 SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       146 ~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +.|+||++|||+..         |..+..|++||+.+|.+|...+.
T Consensus       314 ~~~~vyaiGD~~~~---------~~~~~~A~~~g~~aa~~i~~~l~  350 (352)
T PRK12770        314 SREGVFAAGDVVTG---------PSKIGKAIKSGLRAAQSIHEWLD  350 (352)
T ss_pred             CCCCEEEEcccccC---------cchHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999852         56788999999999999988775

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=6.3e-20  Score=158.04  Aligned_cols=153  Identities=27%  Similarity=0.425  Sum_probs=132.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.+++++|||+|++++|+|+-++.++              .++.++-+. .+|..|++.+++.+.+.|+.+||+++.+ .
T Consensus       187 e~Pkr~vvvGaGYIavE~Agi~~gLg--------------sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~  252 (478)
T KOG0405|consen  187 EQPKRVVVVGAGYIAVEFAGIFAGLG--------------SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSS  252 (478)
T ss_pred             hcCceEEEEccceEEEEhhhHHhhcC--------------CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeeccccc
Confidence            57899999999999999999999998              899999887 8999999999999999999999999998 7


Q ss_pred             eEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           90 VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        90 V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      ++++...     .+....|+...+|+++||+|..|+.   -+++.|++++++|.|.||++.++ +.|+||++||++.-  
T Consensus       253 ~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk--  329 (478)
T KOG0405|consen  253 VTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK--  329 (478)
T ss_pred             ceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCc--
Confidence            7777542     2444566555699999999999995   35667888999999999999999 99999999999842  


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                             ..+..+|+..|+.+|+.+..
T Consensus       330 -------~~LTPVAiaagr~la~rlF~  349 (478)
T KOG0405|consen  330 -------INLTPVAIAAGRKLANRLFG  349 (478)
T ss_pred             -------EecchHHHhhhhhHHHHhhc
Confidence                   45566899999999987654

>PRK12831 putative oxidoreductase; Provisional

Probab=99.80  E-value=1.4e-18  Score=162.09  Aligned_cols=151  Identities=19%  Similarity=0.156  Sum_probs=118.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ...++|+|||||++|+|+|..+.+++              .+|+++++.  ..++....++     +.+.+.||+++++ 
T Consensus       279 ~~gk~VvVIGgG~va~d~A~~l~r~G--------------a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~  339 (464)
T PRK12831        279 KVGKKVAVVGGGNVAMDAARTALRLG--------------AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLT  339 (464)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecc
Confidence            35689999999999999999999987              789999875  3444432222     3356789999988 


Q ss_pred             ceEEEeC--C-e---EEEc------------------CCc--EEEeeEEEEcCCCCCch-hhhc-cCCCCCCCCccccCC
Q 023375           89 IVKDVDS--Q-K---LILN------------------DGT--EVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE  140 (283)
Q Consensus        89 ~V~~v~~--~-~---v~~~------------------~g~--~i~~d~vi~a~G~~~~~-~~~~-~~l~~~~~g~i~Vd~  140 (283)
                      .+.++..  + .   |.+.                  +|+  ++++|+||+++|..|+. ++.. .+++++++|++.||+
T Consensus       340 ~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~  419 (464)
T PRK12831        340 NPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADE  419 (464)
T ss_pred             cceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECC
Confidence            6777742  2 1   2221                  222  69999999999999994 4444 578888889999998


Q ss_pred             C-cccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          141 W-LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       141 ~-l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      + ++| +.|+|||+|||+.-         +.++..|+.+|+.+|.+|.+.+.
T Consensus       420 ~~~~T-s~pgVfAaGD~~~g---------~~~v~~Ai~~G~~AA~~I~~~L~  461 (464)
T PRK12831        420 ETGLT-SKEGVFAGGDAVTG---------AATVILAMGAGKKAAKAIDEYLS  461 (464)
T ss_pred             CCCcc-CCCCEEEeCCCCCC---------chHHHHHHHHHHHHHHHHHHHhc
Confidence            7 888 99999999999841         66789999999999999998875

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.80  E-value=1.2e-18  Score=171.95  Aligned_cols=152  Identities=18%  Similarity=0.198  Sum_probs=120.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||.+|+|+|..+.+....            .+|+++.+.  ..+|..++++...    + +.||+++.. .
T Consensus       667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGa------------keVTLVyRr~~~~MPA~~eEle~A----l-eeGVe~~~~~~  729 (1019)
T PRK09853        667 LGKHVVVVGGGNTAMDAARAALRVPGV------------EKVTVVYRRTKQEMPAWREEYEEA----L-EDGVEFKELLN  729 (1019)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhcCCC------------ceEEEEEccCcccccccHHHHHHH----H-HcCCEEEeCCc
Confidence            468999999999999999988776411            489999985  5677665554333    2 469999987 6


Q ss_pred             eEEEeCC-eE-------------------EEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCC
Q 023375           90 VKDVDSQ-KL-------------------ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ  148 (283)
Q Consensus        90 V~~v~~~-~v-------------------~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~  148 (283)
                      +.+++.+ .+                   ...+++++++|+||+|+|..|+ .++...+++++++|++.||+++++ +.|
T Consensus       730 p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqT-s~p  808 (1019)
T PRK09853        730 PESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGET-SLT  808 (1019)
T ss_pred             eEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCccc-CCC
Confidence            7777532 12                   1123457999999999999998 577778888888899999999998 899


Q ss_pred             CEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          149 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       149 ~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +|||+|||+..         |.++..|+.||+.||+||.....
T Consensus       809 gVFAaGD~a~G---------p~tvv~Ai~qGr~AA~nI~~~~~  842 (1019)
T PRK09853        809 NVYMIGDVQRG---------PSTIVAAIADARRAADAILSREG  842 (1019)
T ss_pred             CEEEEeccccC---------chHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999852         67889999999999999987653

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.80  E-value=9.4e-19  Score=165.50  Aligned_cols=150  Identities=23%  Similarity=0.285  Sum_probs=121.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh-CCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK-SGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~~~-~V   90 (283)
                      +.++|+|||||++|+|+|..|+..+              .+|+++++.+.+..     ...+.+.+.+ .||+++.+ .+
T Consensus       350 ~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l~~~l~~~~gI~i~~~~~v  410 (517)
T PRK15317        350 KGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVLQDKLRSLPNVTIITNAQT  410 (517)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc-----cHHHHHHHhcCCCcEEEECcEE
Confidence            5689999999999999999999877              89999998732221     2344556665 69999999 89


Q ss_pred             EEEeCC-----eEEEc---CC--cEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           91 KDVDSQ-----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~~~-----~v~~~---~g--~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      +++.++     .+++.   ++  +++++|.+++++|.+|+ .+++.. ++++++|++.||+++|+ +.|+|||+|||+..
T Consensus       411 ~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~  488 (517)
T PRK15317        411 TEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGAT-SVPGVFAAGDCTTV  488 (517)
T ss_pred             EEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCC-CCCCEEECccccCC
Confidence            998766     25554   23  36999999999999998 466655 67778899999999998 99999999999964


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                              ..++...|+.+|..||.++...+.
T Consensus       489 --------~~k~~~~A~~eG~~Aa~~~~~~l~  512 (517)
T PRK15317        489 --------PYKQIIIAMGEGAKAALSAFDYLI  512 (517)
T ss_pred             --------CCCEEEEhhhhHHHHHHHHHHHHh
Confidence                    246788899999999999988775

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.79  E-value=3.7e-18  Score=169.08  Aligned_cols=183  Identities=17%  Similarity=0.196  Sum_probs=132.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ...++|+|||||.+|+|+|..+.+...            ..+|+++++.  ..+|...+++...     .+.||+++.. 
T Consensus       664 ~~GK~VVVIGGGnvAmD~Ar~a~Rl~G------------a~kVtLVyRr~~~~Mpa~~eEl~~a-----leeGVe~~~~~  726 (1012)
T TIGR03315       664 PLGKHVVVVGGGNTAMDAARAALRVPG------------VEKVTVVYRRTKRYMPASREELEEA-----LEDGVDFKELL  726 (1012)
T ss_pred             ccCCeEEEECCCHHHHHHHHHHHHhCC------------CceEEEEEccCccccccCHHHHHHH-----HHcCCEEEeCC
Confidence            357899999999999999998876521            1489999975  4567665554332     2469999887 


Q ss_pred             ceEEEeCCeEEE-----------------cCCc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCC-cccCCC
Q 023375           89 IVKDVDSQKLIL-----------------NDGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW-LRVPSV  147 (283)
Q Consensus        89 ~V~~v~~~~v~~-----------------~~g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~-l~~~~~  147 (283)
                      .+.+++++.++.                 .+|+  ++++|+||+|+|..|+ .+++.++++++++|++.||++ +++ +.
T Consensus       727 ~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~T-s~  805 (1012)
T TIGR03315       727 SPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGET-NI  805 (1012)
T ss_pred             ceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCcc-CC
Confidence            677776443221                 1233  6899999999999998 577778888888899999986 777 89


Q ss_pred             CCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcC--CCCCCCCceeeecccEEEecC
Q 023375          148 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAK--DMELGDPFVYRHLGSMATIGR  222 (283)
Q Consensus       148 ~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~slG~  222 (283)
                      |+|||+|||+..         |.++..|+.||+.||.+|.+......... ...  ..+...+|.|..+|.+...+.
T Consensus       806 pgVFAaGD~a~G---------P~tVv~AIaqGr~AA~nIl~~~~~~~~~~-~~~~~~~~~~~~~~Y~~kG~la~~~~  872 (1012)
T TIGR03315       806 TNVFVIGDANRG---------PATIVEAIADGRKAANAILSREGLNSDVD-KVFPINEEVRLAEVYQKKGILVIDDH  872 (1012)
T ss_pred             CCEEEEeCcCCC---------ccHHHHHHHHHHHHHHHHhccccCCcccc-cccccccccccchhhccCcceeccCc
Confidence            999999999852         77899999999999999976543111000 000  001125788889988876553

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.79  E-value=2e-18  Score=164.45  Aligned_cols=153  Identities=18%  Similarity=0.160  Sum_probs=118.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...++|+|||||++|+|+|..|++++              .+|+++++. .+..  ...   ...+.+...||+++++ .
T Consensus       141 ~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~~--~~~---~~~~~~~~~gV~i~~~~~  201 (555)
T TIGR03143       141 FTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFTC--AKL---IAEKVKNHPKIEVKFNTE  201 (555)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCcccc--CHH---HHHHHHhCCCcEEEeCCE
Confidence            45689999999999999999998876              899999987 4321  222   2233345579999999 8


Q ss_pred             eEEEeCCe----EEE---cCCcEE----EeeE----EEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEec
Q 023375           90 VKDVDSQK----LIL---NDGTEV----PYGL----LVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG  154 (283)
Q Consensus        90 V~~v~~~~----v~~---~~g~~i----~~d~----vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiG  154 (283)
                      |+++.++.    +.+   .+|++.    ++|.    |+|++|.+|+..+.+.+++++++|++.||+++++ +.|+|||+|
T Consensus       202 V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~T-s~p~IyAaG  280 (555)
T TIGR03143       202 LKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMET-NVPGVYAAG  280 (555)
T ss_pred             EEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCcccc-CCCCEEEce
Confidence            99997652    222   356543    3566    9999999999544444677788899999999999 899999999


Q ss_pred             cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhh
Q 023375          155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA  192 (283)
Q Consensus       155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~  192 (283)
                      ||+..        .+..+..|+.||+.+|.+|.+.+..
T Consensus       281 Dv~~~--------~~~~v~~A~~~G~~Aa~~i~~~l~~  310 (555)
T TIGR03143       281 DLRPK--------ELRQVVTAVADGAIAATSAERYVKE  310 (555)
T ss_pred             eccCC--------CcchheeHHhhHHHHHHHHHHHHHh
Confidence            99741        2445678999999999999988863

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.79  E-value=7e-19  Score=153.36  Aligned_cols=153  Identities=22%  Similarity=0.328  Sum_probs=133.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +-+++++|||||.+|+|++.-..+++              .+||++|.. .+.+.++.++++..++.|.+.|++++++ +
T Consensus       209 ~vPk~~~viG~G~IGLE~gsV~~rLG--------------seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tk  274 (506)
T KOG1335|consen  209 EVPKKLTVIGAGYIGLEMGSVWSRLG--------------SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTK  274 (506)
T ss_pred             hCcceEEEEcCceeeeehhhHHHhcC--------------CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccE
Confidence            34679999999999999999999998              999999986 8999999999999999999999999999 8


Q ss_pred             eEEEeCC-----eEEEcC---C--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccc
Q 023375           90 VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC  156 (283)
Q Consensus        90 V~~v~~~-----~v~~~~---g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~  156 (283)
                      |...+.+     .|++.+   +  ++++||.+++++|.+|..   -+++.|++.|++|++.||..+++ .+|+||+|||+
T Consensus       275 v~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv  353 (506)
T KOG1335|consen  275 VTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDV  353 (506)
T ss_pred             EEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEeccc
Confidence            9888754     244432   2  579999999999999973   35667888899999999999999 89999999999


Q ss_pred             cccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      ..-         |.+|+.|..||-.+.+.|..
T Consensus       354 ~~g---------pMLAhkAeeegI~~VE~i~g  376 (506)
T KOG1335|consen  354 TLG---------PMLAHKAEEEGIAAVEGIAG  376 (506)
T ss_pred             CCc---------chhhhhhhhhchhheeeecc
Confidence            952         99999999999988877653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.77  E-value=1.5e-17  Score=155.67  Aligned_cols=155  Identities=20%  Similarity=0.240  Sum_probs=118.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCH--------HHHHHHHHHHHhCCCE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD--------RLRHYATTQLSKSGVR   84 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~--------~~~~~~~~~l~~~gV~   84 (283)
                      ..++|+|||||++|+|+|..+.+.+.             .+|++++.... +....        .......+.+.+.||+
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~ga-------------~~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~GV~  345 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQGA-------------KSVTQRDIMPM-PPSRRNKNNPWPYWPMKLEVSNAHEEGVE  345 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-------------CeEEEccccCC-CccccccccCCcccchHHHHHHHHHcCCe
Confidence            46899999999999999998887652             47887765421 11111        0011134567788999


Q ss_pred             EEeC-ceEEEeC--Ce---EEE-----cCC---------cEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccC-CC
Q 023375           85 LVRG-IVKDVDS--QK---LIL-----NDG---------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EW  141 (283)
Q Consensus        85 v~~~-~V~~v~~--~~---v~~-----~~g---------~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd-~~  141 (283)
                      ++++ .+++|..  +.   |++     .+|         +++++|+||+++|.+|+  .+++.++++.+++|++.|| ++
T Consensus       346 i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~  425 (471)
T PRK12810        346 REFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNA  425 (471)
T ss_pred             EEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCc
Confidence            9998 7888863  22   222     122         57999999999999997  3777788888888999998 78


Q ss_pred             cccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          142 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       142 l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +++ +.|+|||+|||+.-         +.++..|+.||+.+|.+|...+.
T Consensus       426 ~~T-s~~gVfa~GD~~~g---------~~~~~~Av~~G~~AA~~i~~~L~  465 (471)
T PRK12810        426 YQT-SNPKVFAAGDMRRG---------QSLVVWAIAEGRQAARAIDAYLM  465 (471)
T ss_pred             ccC-CCCCEEEccccCCC---------chhHHHHHHHHHHHHHHHHHHHh
Confidence            998 89999999999951         55788999999999999999886

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.76  E-value=1.1e-17  Score=164.71  Aligned_cols=150  Identities=22%  Similarity=0.268  Sum_probs=117.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ..++|+|||||++|+|+|..+.+++              . +|+++++.  ..+|....++     +.+++.||+++.+ 
T Consensus       569 ~gk~VvVIGgG~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~  629 (752)
T PRK12778        569 FGKKVAVVGGGNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLH  629 (752)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecC
Confidence            4589999999999999999998876              5 49999875  3445432222     3467889999987 


Q ss_pred             ceEEEeC--C-e---EEEc---------CC-----------cEEEeeEEEEcCCCCCchh-hhcc-CCCCCCCCccccCC
Q 023375           89 IVKDVDS--Q-K---LILN---------DG-----------TEVPYGLLVWSTGVGPSTL-VKSL-DLPKSPGGRIGIDE  140 (283)
Q Consensus        89 ~V~~v~~--~-~---v~~~---------~g-----------~~i~~d~vi~a~G~~~~~~-~~~~-~l~~~~~g~i~Vd~  140 (283)
                      .+.++..  + .   |.+.         +|           .++++|+||+|+|..|+.. .... +++.+++|++.||+
T Consensus       630 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~  709 (752)
T PRK12778        630 NPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDE  709 (752)
T ss_pred             cceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCC
Confidence            6777642  1 1   3331         12           2599999999999999953 3333 67788889999999


Q ss_pred             CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          141 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       141 ~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++++ +.|+|||+|||+.-         +.++..|+.+|+.+|.+|.+.+.
T Consensus       710 ~~~T-s~~gVfA~GD~~~g---------~~~vv~Av~~G~~AA~~I~~~L~  750 (752)
T PRK12778        710 EMQS-SIPGIYAGGDIVRG---------GATVILAMGDGKRAAAAIDEYLS  750 (752)
T ss_pred             CCCC-CCCCEEEeCCccCC---------cHHHHHHHHHHHHHHHHHHHHhc
Confidence            9988 89999999999851         66889999999999999998875

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.76  E-value=2.3e-17  Score=159.70  Aligned_cols=152  Identities=21%  Similarity=0.271  Sum_probs=118.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ...++|+|||||.+|+|+|..+.+++.             .+|+++++.  ..+|..+.++.+    . .+.||+++.+ 
T Consensus       321 ~~gk~VvVIGgG~~a~e~A~~l~~~Ga-------------~~Vtlv~r~~~~~mpa~~~ei~~----a-~~eGV~i~~~~  382 (652)
T PRK12814        321 HPGKKVVVIGGGNTAIDAARTALRLGA-------------ESVTILYRRTREEMPANRAEIEE----A-LAEGVSLRELA  382 (652)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHHH----H-HHcCCcEEecc
Confidence            356899999999999999999987761             479999875  356765444322    2 3569999988 


Q ss_pred             ceEEEeC--CeE--E---Ec---------------CCc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCC-Cc
Q 023375           89 IVKDVDS--QKL--I---LN---------------DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDE-WL  142 (283)
Q Consensus        89 ~V~~v~~--~~v--~---~~---------------~g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~-~l  142 (283)
                      .+.++..  +.+  .   ++               +|+  ++++|+||+++|..|+ .++...+++.+.+|++.||+ ++
T Consensus       383 ~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~  462 (652)
T PRK12814        383 APVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETL  462 (652)
T ss_pred             CcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCC
Confidence            6777753  221  1   11               122  5899999999999998 46677788888889999997 56


Q ss_pred             ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++ +.|+|||+|||+..         |.++..|+.||+.+|.+|.+.+.
T Consensus       463 ~T-s~pgVfA~GDv~~g---------~~~v~~Ai~~G~~AA~~I~~~L~  501 (652)
T PRK12814        463 QT-SVAGVFAGGDCVTG---------ADIAINAVEQGKRAAHAIDLFLN  501 (652)
T ss_pred             cC-CCCCEEEcCCcCCC---------chHHHHHHHHHHHHHHHHHHHHc
Confidence            66 89999999999852         66889999999999999999987

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.76  E-value=1.8e-17  Score=151.82  Aligned_cols=162  Identities=27%  Similarity=0.317  Sum_probs=137.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCC-HHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~-~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .++++|||+|+.|+|+|..+++.+              ++|++++.. ++++.+- +.+.+.+.+.|+++||+++++ .+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~  201 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKV  201 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCce
Confidence            479999999999999999999988              999999998 8888877 899999999999999999999 89


Q ss_pred             EEEeCCe-------EEEcCCcEEEeeEEEEcCCCCCchhhhccCC--CCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           91 KDVDSQK-------LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL--PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        91 ~~v~~~~-------v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l--~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      .+|+.+.       +...+++++++|.+++++|.+|+..+.+...  .....|++.||+.+++...++||++|||+..+.
T Consensus       202 ~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~  281 (415)
T COG0446         202 VGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPA  281 (415)
T ss_pred             EEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeec
Confidence            9998752       5677889999999999999999865555443  455678999999999833899999999999876


Q ss_pred             CC-CCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          162 ST-GKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       162 ~~-~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                      +. +.....+.++.|..+++.++.++...
T Consensus       282 ~~~~~~~~~~~~~~a~~~~~i~~~~~~~~  310 (415)
T COG0446         282 AETGKGGRIALWAIAVAAGRIAAENIAGA  310 (415)
T ss_pred             ccCCceeeeechhhHhhhhHHHHHHhccc
Confidence            54 23345778899999999999988643

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=3.2e-17  Score=144.01  Aligned_cols=152  Identities=24%  Similarity=0.314  Sum_probs=125.2

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhC-CCEEEeC-
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GVRLVRG-   88 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~-gV~v~~~-   88 (283)
                      ..+.++|+|||||.+++|-|..|+++.              .+|+++++..-+..     .+.+.+.++++ +|+++.+ 
T Consensus       140 ~~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~l~~~~~i~~~~~~  200 (305)
T COG0492         140 FFKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVERLKKNVKIEVLTNT  200 (305)
T ss_pred             cccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHHHHhcCCeEEEeCC
Confidence            455679999999999999999999998              88999999854433     23344555555 8999999 


Q ss_pred             ceEEEeCC---eEEEcCC----cEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           89 IVKDVDSQ---KLILNDG----TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        89 ~V~~v~~~---~v~~~~g----~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      .+.++.++   .|++++.    +++++|-++++.|..|+ .++...+. ++++|+|.||+.++| +.|+|||+||++.. 
T Consensus       201 ~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~T-svpGifAaGDv~~~-  277 (305)
T COG0492         201 VVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMET-SVPGIFAAGDVADK-  277 (305)
T ss_pred             ceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCccc-CCCCEEEeEeeccC-
Confidence            89999884   6777763    36899999999999999 57777666 788999999999999 99999999999963 


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                             ..+++..|..+|..+|.++.+.+.
T Consensus       278 -------~~rqi~ta~~~G~~Aa~~a~~~l~  301 (305)
T COG0492         278 -------NGRQIATAAGDGAIAALSAERYLE  301 (305)
T ss_pred             -------cccEEeehhhhHHHHHHHHHHHhh
Confidence                   133777899999999999888775

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.74  E-value=6.7e-18  Score=158.20  Aligned_cols=158  Identities=24%  Similarity=0.400  Sum_probs=135.1

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-CCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SSFDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-~~~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      .+..++-+|||||..|+|+|..|.+.+              .++++++-. .++ ..+++.....+...++++|++++++
T Consensus       142 ar~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~  207 (793)
T COG1251         142 ARNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLE  207 (793)
T ss_pred             HhccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecc
Confidence            345567899999999999999999988              999999887 444 5688889999999999999999998


Q ss_pred             -ceEEEeC----CeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           89 -IVKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        89 -~V~~v~~----~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                       ..+++.+    +.+.++||+.+++|.|||++|++|+ .+....+++.++  .|.||+++|| +.|+|||+|+|+.+.. 
T Consensus       208 ~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~mqT-sdpdIYAvGEcae~~g-  283 (793)
T COG1251         208 KNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYMQT-SDPDIYAVGECAEHRG-  283 (793)
T ss_pred             cchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC--Ceeecccccc-cCCCeeehhhHHHhcC-
Confidence             4555543    3688999999999999999999999 677778998876  6999999999 9999999999998643 


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                          ....+...+..||+++|+++....
T Consensus       284 ----~~yGLVaP~yeq~~v~a~hl~~~~  307 (793)
T COG1251         284 ----KVYGLVAPLYEQAKVLADHLCGGE  307 (793)
T ss_pred             ----ccceehhHHHHHHHHHHHHhccCc
Confidence                357777889999999999987543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.74  E-value=8.3e-17  Score=150.33  Aligned_cols=150  Identities=17%  Similarity=0.158  Sum_probs=117.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||.+|+++|..+.+++.             .+|+++++.  ..+|..+.++     +.+++.||+++++ .
T Consensus       281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~  342 (467)
T TIGR01318       281 EGKRVVVLGGGDTAMDCVRTAIRLGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQ  342 (467)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCC
Confidence            35799999999999999999887761             479999975  3466554433     3467789999999 7


Q ss_pred             eEEEeC--C-e---EEEc---------C-----------CcEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccC--
Q 023375           90 VKDVDS--Q-K---LILN---------D-----------GTEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID--  139 (283)
Q Consensus        90 V~~v~~--~-~---v~~~---------~-----------g~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd--  139 (283)
                      +.++..  + .   |++.         +           .+++++|.||+++|.+|+  .++..++++.+++|++.||  
T Consensus       343 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~  422 (467)
T TIGR01318       343 PVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDV  422 (467)
T ss_pred             cEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCc
Confidence            888853  2 2   2321         1           136899999999999997  3566678888888999999  


Q ss_pred             --CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          140 --EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       140 --~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                        .++++ +.|+||++|||+..         +.++..|+.+|+.+|.+|.+.+
T Consensus       423 ~~~~~~T-~~~gVfa~GD~~~~---------~~~~~~Ai~~G~~aA~~i~~~L  465 (467)
T TIGR01318       423 SYLPYQT-TNPKIFAGGDAVRG---------ADLVVTAVAEGRQAAQGILDWL  465 (467)
T ss_pred             cccCccC-CCCCEEEECCcCCC---------ccHHHHHHHHHHHHHHHHHHHh
Confidence              67887 89999999999852         5677899999999999998876

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.73  E-value=1.2e-16  Score=155.16  Aligned_cols=151  Identities=19%  Similarity=0.168  Sum_probs=118.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||++|+++|..+.+++.             .+|+++.+. . .+|..+.+     .+.+++.||+++++ .
T Consensus       467 ~gk~VvVIGgG~~a~d~A~~a~r~ga-------------~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~  528 (654)
T PRK12769        467 AGLNVVVLGGGDTAMDCVRTALRHGA-------------SNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQ  528 (654)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccC
Confidence            35799999999999999998887761             479999875 3 45654433     34577889999988 7


Q ss_pred             eEEEeC---Ce---EEEc---------CC-----------cEEEeeEEEEcCCCCCch--hhhccCCCCCCCCccccCC-
Q 023375           90 VKDVDS---QK---LILN---------DG-----------TEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDE-  140 (283)
Q Consensus        90 V~~v~~---~~---v~~~---------~g-----------~~i~~d~vi~a~G~~~~~--~~~~~~l~~~~~g~i~Vd~-  140 (283)
                      ++++..   +.   |++.         +|           .++++|+||+|+|+.|++  +++.++++++++|.+.||+ 
T Consensus       529 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~  608 (654)
T PRK12769        529 PVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVE  608 (654)
T ss_pred             cEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCC
Confidence            777742   22   3331         12           269999999999999983  6677788888899999985 


Q ss_pred             ---CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          141 ---WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       141 ---~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                         +++| +.|+|||+||++..         +.++..|+.+|+.+|.+|.+.+.
T Consensus       609 ~~~~~~T-s~~gVfAaGD~~~g---------~~~vv~Ai~~Gr~AA~~I~~~L~  652 (654)
T PRK12769        609 SQYRYQT-SNPKIFAGGDAVRG---------ADLVVTAMAEGRHAAQGIIDWLG  652 (654)
T ss_pred             cccCccc-CCCCEEEcCCcCCC---------CcHHHHHHHHHHHHHHHHHHHhC
Confidence               4788 89999999999852         66788999999999999998874

>PRK13984 putative oxidoreductase; Provisional

Probab=99.71  E-value=2.9e-16  Score=151.33  Aligned_cols=153  Identities=20%  Similarity=0.238  Sum_probs=107.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      .++|+|||||++|+|+|..+++++...    +    ...+|+++...   ..++....++    .+ +.+.||+++.+ .
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~----~----g~~~V~v~~~~r~~~~~~~~~~e~----~~-~~~~GV~i~~~~~  484 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKME----Y----GEVNVKVTSLERTFEEMPADMEEI----EE-GLEEGVVIYPGWG  484 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccc----c----CceEEEEeccccCcccCCCCHHHH----HH-HHHcCCEEEeCCC
Confidence            579999999999999999998764100    0    11467776432   3344433332    22 34579999987 6


Q ss_pred             eEEEeC--C---eEEEc-------------------CCcEEEeeEEEEcCCCCCc-hhhh-cc--CCCCCCCCccccCCC
Q 023375           90 VKDVDS--Q---KLILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SL--DLPKSPGGRIGIDEW  141 (283)
Q Consensus        90 V~~v~~--~---~v~~~-------------------~g~~i~~d~vi~a~G~~~~-~~~~-~~--~l~~~~~g~i~Vd~~  141 (283)
                      +.++..  +   .|++.                   +.+++++|.||+++|.+|+ .++. .+  +++. ++|++.||++
T Consensus       485 ~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~  563 (604)
T PRK13984        485 PMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEY  563 (604)
T ss_pred             CEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCC
Confidence            666642  1   12221                   1247999999999999998 3433 22  3444 4688999999


Q ss_pred             cccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          142 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       142 l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +|| +.|+|||+|||+..         + ....|+.+|+.+|.+|...+.
T Consensus       564 ~~T-s~~gVfAaGD~~~~---------~-~~v~Ai~~G~~AA~~I~~~L~  602 (604)
T PRK13984        564 GQT-SIPWLFAGGDIVHG---------P-DIIHGVADGYWAAEGIDMYLR  602 (604)
T ss_pred             Ccc-CCCCEEEecCcCCc---------h-HHHHHHHHHHHHHHHHHHHhc
Confidence            998 99999999999952         3 346799999999999998874

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.70  E-value=3.9e-16  Score=155.67  Aligned_cols=150  Identities=19%  Similarity=0.240  Sum_probs=115.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||.+|+++|..+.+++              .+|+++.+.  ..+|....++.    . ..+.||+++.+ .
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e~~----~-a~eeGV~~~~~~~  506 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEELH----H-ALEEGINLAVLRA  506 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHHHH----H-HHHCCCEEEeCcc
Confidence            4589999999999999999999887              789999875  34554433332    2 33569999887 7


Q ss_pred             eEEEeCC----eE---EE---------c--------CC--cEEEeeEEEEcCCCCCchhhhc--cCCCCCCCCccccCC-
Q 023375           90 VKDVDSQ----KL---IL---------N--------DG--TEVPYGLLVWSTGVGPSTLVKS--LDLPKSPGGRIGIDE-  140 (283)
Q Consensus        90 V~~v~~~----~v---~~---------~--------~g--~~i~~d~vi~a~G~~~~~~~~~--~~l~~~~~g~i~Vd~-  140 (283)
                      ++++..+    .|   .+         .        +|  .++++|+||+|+|..|++.+..  .+++.+++|.|.||+ 
T Consensus       507 p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~  586 (944)
T PRK12779        507 PREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKG  586 (944)
T ss_pred             eEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCC
Confidence            7777432    12   11         1        12  3699999999999999965432  367778889999996 


Q ss_pred             CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          141 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       141 ~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +++| +.|+|||+|||+.-         +.++..|+.+|+.||.+|...+.
T Consensus       587 ~~~T-s~pgVFAaGD~~~G---------~~~vv~Ai~eGr~AA~~I~~~L~  627 (944)
T PRK12779        587 SQRT-SIKGVYSGGDAARG---------GSTAIRAAGDGQAAAKEIVGEIP  627 (944)
T ss_pred             CCcc-CCCCEEEEEcCCCC---------hHHHHHHHHHHHHHHHHHHHHhc
Confidence            4777 89999999999951         56889999999999999998875

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=9.9e-17  Score=138.05  Aligned_cols=156  Identities=26%  Similarity=0.403  Sum_probs=126.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC---
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG---   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~---   88 (283)
                      ..+-+.+|||+|+.++|+|+.|+.++              .+|++.-++-+|..|+.++.+.+.+.|+++||++...   
T Consensus       196 ~~PGkTLvVGa~YVaLECAgFL~gfg--------------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp  261 (503)
T KOG4716|consen  196 YEPGKTLVVGAGYVALECAGFLKGFG--------------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVP  261 (503)
T ss_pred             CCCCceEEEccceeeeehhhhHhhcC--------------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccc
Confidence            34568899999999999999999988              8999999999999999999999999999999999866   


Q ss_pred             -ceEEEeCCe--EEEc---CC--cEEEeeEEEEcCCCCCch---hhhccCCCCC-CCCccccCCCcccCCCCCEEEeccc
Q 023375           89 -IVKDVDSQK--LILN---DG--TEVPYGLLVWSTGVGPST---LVKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDC  156 (283)
Q Consensus        89 -~V~~v~~~~--v~~~---~g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~-~~g~i~Vd~~l~~~~~~~VfaiGD~  156 (283)
                       +|++++...  |...   .+  -+-.+|+|+||+|..+..   -+.+.|...+ .+|.|.||+.-++ +.|.|||+||.
T Consensus       262 ~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDI  340 (503)
T KOG4716|consen  262 ERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDI  340 (503)
T ss_pred             eeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecce
Confidence             355555554  2222   22  245699999999998873   2334455553 4688999999888 99999999999


Q ss_pred             cccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      ..        ..|.+...|++.|+.+|+.+..-.
T Consensus       341 l~--------~kpELTPvAIqsGrlLa~Rlf~gs  366 (503)
T KOG4716|consen  341 LE--------DKPELTPVAIQSGRLLARRLFAGS  366 (503)
T ss_pred             ec--------CCcccchhhhhhchHHHHHHhcCc
Confidence            85        348889999999999999876543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.67  E-value=1.3e-15  Score=142.86  Aligned_cols=156  Identities=22%  Similarity=0.262  Sum_probs=110.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC---------CCCHH--HHHHHHHHHHh
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------SFDDR--LRHYATTQLSK   80 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~---------~~~~~--~~~~~~~~l~~   80 (283)
                      ..++|+|||||++|+|+|..+.+.+.             .+|++++.. ..+.         .++..  .....++..+.
T Consensus       282 ~gk~VvViGgG~~g~d~a~~a~~~ga-------------~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~  348 (485)
T TIGR01317       282 KGKKVVVIGGGDTGADCVGTSLRHGA-------------ASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAH  348 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhh
Confidence            46899999999999999988877652             589999865 3322         11111  22223344444


Q ss_pred             CCCEE-EeC-ceEEEeCC---e---EEE--------cCC-----------cEEEeeEEEEcCCCC-Cc-hhhhccCCCCC
Q 023375           81 SGVRL-VRG-IVKDVDSQ---K---LIL--------NDG-----------TEVPYGLLVWSTGVG-PS-TLVKSLDLPKS  131 (283)
Q Consensus        81 ~gV~v-~~~-~V~~v~~~---~---v~~--------~~g-----------~~i~~d~vi~a~G~~-~~-~~~~~~~l~~~  131 (283)
                      .||++ +.+ .+.++..+   .   +.+        ++|           .++++|+||+++|.. |+ .++..++++++
T Consensus       349 ~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~  428 (485)
T TIGR01317       349 YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKT  428 (485)
T ss_pred             cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccC
Confidence            57654 334 45555321   1   221        123           379999999999996 66 57777888888


Q ss_pred             CCCcccc-CCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          132 PGGRIGI-DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       132 ~~g~i~V-d~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++|++.+ |+++++ +.|+|||+|||+..         +.++..|+.+|+.+|.+|.+.+.
T Consensus       429 ~~G~i~~~~~~~~T-s~~gVfAaGD~~~g---------~~~~~~Av~~G~~AA~~i~~~L~  479 (485)
T TIGR01317       429 RRGNISAGYDDYST-SIPGVFAAGDCRRG---------QSLIVWAINEGRKAAAAVDRYLM  479 (485)
T ss_pred             CCCCEEecCCCceE-CCCCEEEeeccCCC---------cHHHHHHHHHHHHHHHHHHHHHh
Confidence            8898855 577887 99999999999851         56788999999999999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.66  E-value=2.5e-15  Score=145.47  Aligned_cols=151  Identities=19%  Similarity=0.190  Sum_probs=117.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||.+|+++|..+.+++.             .+|+++.+. . .+|..+.++.     .+++.||+++++ .
T Consensus       450 ~gk~vvViGgG~~a~d~a~~~~~~Ga-------------~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~  511 (639)
T PRK12809        450 EGKRVVVLGGGDTTMDCLRTSIRLNA-------------ASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQ  511 (639)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccC
Confidence            45899999999999999998877661             479999875 3 3565544432     356789999988 7


Q ss_pred             eEEEeC---CeE---EE---c------CC-----------cEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccCC-
Q 023375           90 VKDVDS---QKL---IL---N------DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDE-  140 (283)
Q Consensus        90 V~~v~~---~~v---~~---~------~g-----------~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd~-  140 (283)
                      ++++..   +.|   .+   +      +|           .++++|+||+++|..|+  .+++.++++++++|++.||+ 
T Consensus       512 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~  591 (639)
T PRK12809        512 PQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDV  591 (639)
T ss_pred             CEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCC
Confidence            888752   222   21   1      12           36899999999999997  35666788888889999985 


Q ss_pred             ---CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          141 ---WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       141 ---~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                         +++| +.|+|||+|||+..         +.+...|+.+|+.+|++|...+.
T Consensus       592 ~~~~~~T-s~~gVfA~GD~~~g---------~~~vv~Ai~~Gr~AA~~i~~~l~  635 (639)
T PRK12809        592 GYLPTQT-HLKKVFAGGDAVHG---------ADLVVTAMAAGRQAARDMLTLFD  635 (639)
T ss_pred             cccCccc-CCCCEEEcCCCCCC---------chHHHHHHHHHHHHHHHHHHHHh
Confidence               4788 89999999999852         56788999999999999999885

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.65  E-value=2.2e-16  Score=139.18  Aligned_cols=166  Identities=19%  Similarity=0.266  Sum_probs=134.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEE-EEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT-LIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~-li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|-|||+|+.|.|+|+.|.+..+.          .+.+|+ +|+.. ..-.-+++-++++..+.+++.||.++.+ .
T Consensus       346 ek~siTIiGnGflgSELacsl~rk~r~----------~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~  415 (659)
T KOG1346|consen  346 EKQSITIIGNGFLGSELACSLKRKYRN----------EGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAK  415 (659)
T ss_pred             hcceEEEEcCcchhhhHHHHHHHhhhc----------cCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchh
Confidence            347999999999999999999876531          346666 44433 3333455788999999999999999999 7


Q ss_pred             eEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCC-CccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           90 VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        90 V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~-g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      |.++...    .+.+.||.++..|+|++|+|..|| .+.+.++++.|++ |.+.||..|+.  ..|||++||++.+.++-
T Consensus       416 v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~  493 (659)
T KOG1346|consen  416 VESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGV  493 (659)
T ss_pred             hhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec--ccceeeecchhhhhccc
Confidence            8777543    467789999999999999999999 6777889999875 78999999987  68999999999998864


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      -++-+-....+|.-.|+.++.|+....
T Consensus       494 LGrRRVehhdhavvSGRLAGENMtgAa  520 (659)
T KOG1346|consen  494 LGRRRVEHHDHAVVSGRLAGENMTGAA  520 (659)
T ss_pred             ccceeccccccceeeceeccccccccc
Confidence            444566777889999999999987544

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.65  E-value=7e-15  Score=147.90  Aligned_cols=151  Identities=15%  Similarity=0.149  Sum_probs=114.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||.+|+++|..+.+++.             ..|+++.+.  .-+|....+     .+.+++.||+++.+ .
T Consensus       570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~  631 (1006)
T PRK12775        570 LGKSVVVIGAGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHS  631 (1006)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCC
Confidence            56899999999999999999888762             468888764  334433222     24567789999988 6


Q ss_pred             eEEEeC--C-e---EEEc-----------------CC--cEEEeeEEEEcCCCCCch-hhhc-cCCCCCCCCccccCC--
Q 023375           90 VKDVDS--Q-K---LILN-----------------DG--TEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE--  140 (283)
Q Consensus        90 V~~v~~--~-~---v~~~-----------------~g--~~i~~d~vi~a~G~~~~~-~~~~-~~l~~~~~g~i~Vd~--  140 (283)
                      +.++..  + .   |++.                 +|  .++++|+||+++|..|+. +... .+++++++|.+.+|+  
T Consensus       632 p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~  711 (1006)
T PRK12775        632 PVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGK  711 (1006)
T ss_pred             cEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCc
Confidence            777742  2 1   3221                 12  269999999999999995 3333 367777889999996  


Q ss_pred             ---CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          141 ---WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       141 ---~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                         +++| +.|+|||+|||+.-         +.++..|+.+|+.+|.+|...+.
T Consensus       712 v~~~~~T-s~pgVFAaGDv~~G---------~~~vv~Ai~~Gr~AA~~I~~~L~  755 (1006)
T PRK12775        712 LESTQST-NLPGVFAGGDIVTG---------GATVILAMGAGRRAARSIATYLR  755 (1006)
T ss_pred             cccCcCC-CCCCEEEecCcCCC---------ccHHHHHHHHHHHHHHHHHHHHh
Confidence               6777 99999999999851         67889999999999999999987

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.64  E-value=5.1e-15  Score=141.56  Aligned_cols=150  Identities=20%  Similarity=0.263  Sum_probs=115.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||.+|++.|..+.+++.             .+|+++.+.  ..++.....+.     ...+.||+++.+ .
T Consensus       266 ~gk~v~ViGgg~~a~d~a~~a~~lga-------------~~v~ii~r~~~~~~~~~~~~~~-----~a~~~GVki~~~~~  327 (564)
T PRK12771        266 LGKRVVVIGGGNTAMDAARTARRLGA-------------EEVTIVYRRTREDMPAHDEEIE-----EALREGVEINWLRT  327 (564)
T ss_pred             CCCCEEEECChHHHHHHHHHHHHcCC-------------CEEEEEEecCcccCCCCHHHHH-----HHHHcCCEEEecCC
Confidence            36799999999999999988877652             578888875  34555444332     245679999988 7


Q ss_pred             eEEEeCCe-----E---EE------cCC---------cEEEeeEEEEcCCCCCc-hhhhc-cCCCCCCCCccccCC-Ccc
Q 023375           90 VKDVDSQK-----L---IL------NDG---------TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDE-WLR  143 (283)
Q Consensus        90 V~~v~~~~-----v---~~------~~g---------~~i~~d~vi~a~G~~~~-~~~~~-~~l~~~~~g~i~Vd~-~l~  143 (283)
                      +.++..+.     +   .+      ++|         .++++|+||+++|..|+ .++.+ .++. +++|++.||+ +++
T Consensus       328 ~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~  406 (564)
T PRK12771        328 PVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMM  406 (564)
T ss_pred             cEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCcc
Confidence            88886431     1   11      112         37999999999999998 46654 4676 6789999998 566


Q ss_pred             cCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          144 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       144 ~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      + +.|+||++|||+..         |.++..|+.||+.+|.+|.+.+.
T Consensus       407 t-s~~~Vfa~GD~~~g---------~~~v~~Av~~G~~aA~~i~~~L~  444 (564)
T PRK12771        407 T-GRPGVFAGGDMVPG---------PRTVTTAIGHGKKAARNIDAFLG  444 (564)
T ss_pred             C-CCCCEEeccCcCCC---------chHHHHHHHHHHHHHHHHHHHHc
Confidence            6 99999999999851         77899999999999999999986

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.58  E-value=2.7e-15  Score=124.35  Aligned_cols=129  Identities=31%  Similarity=0.503  Sum_probs=92.6

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC----CCCCH-----------HHH--H--HHHH
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT   76 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l----~~~~~-----------~~~--~--~~~~   76 (283)
                      +|+|||||++|+.+|.+|++.+              .+|++++.....    ..++.           ...  .  .+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD   66 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999999999665              999999765311    11110           011  1  3344


Q ss_pred             HHHhCCCEEEeC-ceEEEeCC--eE----------EEcCCcEEEeeEEEEcCCCCCchh-h-------------------
Q 023375           77 QLSKSGVRLVRG-IVKDVDSQ--KL----------ILNDGTEVPYGLLVWSTGVGPSTL-V-------------------  123 (283)
Q Consensus        77 ~l~~~gV~v~~~-~V~~v~~~--~v----------~~~~g~~i~~d~vi~a~G~~~~~~-~-------------------  123 (283)
                      .+...+++++.+ ++.+++..  .+          ...++.+++||.+|+|+|..|+.. +                   
T Consensus        67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~  146 (201)
T PF07992_consen   67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL  146 (201)
T ss_dssp             HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred             ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence            457789999877 78887643  21          123456899999999999886511 0                   


Q ss_pred             ------------------hccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375          124 ------------------KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus       124 ------------------~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                                        +..+++++++|++.||+++|+ +.|+||++|||+.+
T Consensus       147 ~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~  199 (201)
T PF07992_consen  147 ELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGI  199 (201)
T ss_dssp             THSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence                              233556678899999999999 79999999999975

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.50  E-value=2.2e-13  Score=96.31  Aligned_cols=74  Identities=34%  Similarity=0.560  Sum_probs=67.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV   93 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v   93 (283)
                      +|+|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ .++++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i   66 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI   66 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence            6899999999999999999987              999999998 7889999999999999999999999999 89998


Q ss_pred             eCC--e--EEEcCC
Q 023375           94 DSQ--K--LILNDG  103 (283)
Q Consensus        94 ~~~--~--v~~~~g  103 (283)
                      +.+  +  |+++||
T Consensus        67 ~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   67 EKDGDGVEVTLEDG   80 (80)
T ss_dssp             EEETTSEEEEEETS
T ss_pred             EEeCCEEEEEEecC
Confidence            654  4  677765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2e-13  Score=118.22  Aligned_cols=153  Identities=22%  Similarity=0.282  Sum_probs=114.2

Q ss_pred             CCCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhC
Q 023375            2 FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS   81 (283)
Q Consensus         2 ~~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~   81 (283)
                      +||-+|-. --+.|+|+|||||.+|+|+|..|+-..              .+||++|-..-|.     .-+.+++.|++.
T Consensus       343 yCPHCDGP-LF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eLk-----AD~VLq~kl~sl  402 (520)
T COG3634         343 YCPHCDGP-LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPELK-----ADAVLQDKLRSL  402 (520)
T ss_pred             eCCCCCCc-ccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhhh-----hHHHHHHHHhcC
Confidence            35666654 357789999999999999999999876              7899996442221     223455556554


Q ss_pred             -CCEEEeC-ceEEEeCC-----eEEEc---CCc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCC
Q 023375           82 -GVRLVRG-IVKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ  148 (283)
Q Consensus        82 -gV~v~~~-~V~~v~~~-----~v~~~---~g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~  148 (283)
                       +|+++++ .-++|.++     ++.+.   +|+  .+.-+-|++-.|..|| .|++.. ++++++|.|.||....+ +.|
T Consensus       403 ~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~T-svp  480 (520)
T COG3634         403 PNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGET-NVP  480 (520)
T ss_pred             CCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCc-CCC
Confidence             7999999 78899776     34443   343  4677789999999999 577765 88899999999999999 999


Q ss_pred             CEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHH
Q 023375          149 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS  184 (283)
Q Consensus       149 ~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~  184 (283)
                      +|||+|||...+        .++...|+.+|..++-
T Consensus       481 GvFAAGD~T~~~--------yKQIIIamG~GA~AaL  508 (520)
T COG3634         481 GVFAAGDCTTVP--------YKQIIIAMGEGAKASL  508 (520)
T ss_pred             ceeecCcccCCc--------cceEEEEecCcchhhh
Confidence            999999999753        3444455555655543

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.42  E-value=4.6e-12  Score=128.05  Aligned_cols=147  Identities=17%  Similarity=0.145  Sum_probs=108.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      ..++|+|||+|++|+|+|..|++.+.             ..|++++....+       ...+.+.|++.||+++++ .|+
T Consensus       316 ~gk~VvViG~G~~g~e~A~~L~~~G~-------------~vV~vv~~~~~~-------~~~l~~~L~~~GV~i~~~~~v~  375 (985)
T TIGR01372       316 PGKRIVVATNNDSAYRAAADLLAAGI-------------AVVAIIDARADV-------SPEARAEARELGIEVLTGHVVA  375 (985)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-------------ceEEEEccCcch-------hHHHHHHHHHcCCEEEcCCeEE
Confidence            45899999999999999999998762             457888765311       233566788999999999 788


Q ss_pred             EEeCC----eEEEc----CCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           92 DVDSQ----KLILN----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        92 ~v~~~----~v~~~----~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      ++.++    .|++.    +++++++|.|+++.|.+|+ .+...+++++.-+....  .+...++.|+||++|||+.    
T Consensus       376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~--~~~~~t~v~gVyaaGD~~g----  449 (985)
T TIGR01372       376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIA--AFLPGDAVQGCILAGAANG----  449 (985)
T ss_pred             EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccC--ceecCCCCCCeEEeeccCC----
Confidence            88765    35554    4568999999999999999 56666665542111100  0111236899999999984    


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                            ...+..|+.+|+.+|..+...+.
T Consensus       450 ------~~~~~~A~~eG~~Aa~~i~~~lg  472 (985)
T TIGR01372       450 ------LFGLAAALADGAAAGAAAARAAG  472 (985)
T ss_pred             ------ccCHHHHHHHHHHHHHHHHHHcC
Confidence                  44677899999999999887663

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.39  E-value=6.5e-13  Score=113.90  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             CCCCccccC-CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          131 SPGGRIGID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       131 ~~~g~i~Vd-~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      |..|++.|| .++|++.+||||+||||.+.       |..+++..+..|..++-+|+-...+
T Consensus       307 dktGfvdVD~~TlQs~kypNVFgiGDc~n~-------PnsKTaAAvaaq~~vv~~nl~~~m~  361 (446)
T KOG3851|consen  307 DKTGFVDVDQSTLQSKKYPNVFGIGDCMNL-------PNSKTAAAVAAQSPVVDKNLTQVMQ  361 (446)
T ss_pred             CcccceecChhhhccccCCCceeeccccCC-------CchhhHHHHHhcCchhhhhHHHHhc
Confidence            567999999 68999999999999999985       4578888888999999999998886

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=5.7e-12  Score=103.18  Aligned_cols=152  Identities=20%  Similarity=0.223  Sum_probs=110.1

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHH-HHHHhCCCEEEeC-
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT-TQLSKSGVRLVRG-   88 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~-~~l~~~gV~v~~~-   88 (283)
                      .-+.+-.+|||||.+++|-|..|..++              .+|.++++.+.+.     .++.++ +.++.-+|+++.+ 
T Consensus       154 ifrnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~fR-----As~~Mq~ra~~npnI~v~~nt  214 (322)
T KOG0404|consen  154 IFRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHFR-----ASKIMQQRAEKNPNIEVLYNT  214 (322)
T ss_pred             hhcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhhh-----HHHHHHHHHhcCCCeEEEech
Confidence            356788999999999999999999988              8999999874332     223333 3344568999988 


Q ss_pred             ceEEEeCC-----eEEE-----cCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEecccc
Q 023375           89 IVKDVDSQ-----KLIL-----NDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS  157 (283)
Q Consensus        89 ~V~~v~~~-----~v~~-----~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a  157 (283)
                      .+.+..++     .+.+     .+-+.++.+-++.+.|..|++ +++. .+++|++|+|.+-+.-..++.|++||+||+.
T Consensus       215 ~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVq  293 (322)
T KOG0404|consen  215 VAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQ  293 (322)
T ss_pred             hhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccc
Confidence            44454443     2333     233579999999999999995 5544 8889999999998555445999999999998


Q ss_pred             ccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          158 GYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       158 ~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      ..        .-.++..|...|.++|-.-.+++
T Consensus       294 D~--------kyRQAvTaAgsGciaaldAe~yL  318 (322)
T KOG0404|consen  294 DK--------KYRQAVTAAGSGCIAALDAERYL  318 (322)
T ss_pred             hH--------HHHHHHhhhccchhhhhhHHHHh
Confidence            63        24456666667777765444443

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.19  E-value=5.1e-10  Score=104.53  Aligned_cols=78  Identities=13%  Similarity=0.091  Sum_probs=60.2

Q ss_pred             EEEeeEEEEcCCCCCch-----hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHH
Q 023375          105 EVPYGLLVWSTGVGPST-----LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG  179 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~~~-----~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg  179 (283)
                      ++++|.||.+.|.++.+     +-...++..+.+|+|.+|+.+++ +.|+|||+|||..     |   .....-.++.+|
T Consensus       340 ~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~-----G---p~gvI~t~~~dA  410 (491)
T PLN02852        340 DLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKR-----G---PTGIIGTNLTCA  410 (491)
T ss_pred             EEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEeeeEec-----C---CCCeeeecHhhH
Confidence            68999999999998432     11222445567799999988777 8999999999996     2   133566788999


Q ss_pred             HHHHHHHHHHhh
Q 023375          180 KYLFSLLNRIGK  191 (283)
Q Consensus       180 ~~~a~~i~~~~~  191 (283)
                      ..+|.+|...+.
T Consensus       411 ~~ta~~i~~d~~  422 (491)
T PLN02852        411 EETVASIAEDLE  422 (491)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.12  E-value=7.6e-10  Score=97.19  Aligned_cols=91  Identities=23%  Similarity=0.321  Sum_probs=75.5

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC------------CCCC-----CHHHHHHHHHHH
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL   78 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~------------l~~~-----~~~~~~~~~~~l   78 (283)
                      +|+|||||++|+++|..|++.+              .+|+|||++..            .|.+     +.++..++.+.+
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   67 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA   67 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence            6999999999999999999876              89999997431            1333     257888889999


Q ss_pred             HhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           79 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ++.|+++++.+|++++.+    .+.+++++++.+|.+|+|+|..|+
T Consensus        68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~  113 (300)
T TIGR01292        68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR  113 (300)
T ss_pred             HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence            999999988778888765    466677889999999999999886

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.09  E-value=8e-10  Score=103.08  Aligned_cols=142  Identities=14%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      -+.++|+|||+|.+|+++|.+|+...              .+|+++++.......         ..+......+..+ .|
T Consensus       202 ~~gk~VvVVG~G~Sg~diA~~L~~~a--------------~~V~l~~r~~~~~~~---------~~~~~~~~~v~~~~~I  258 (461)
T PLN02172        202 FKNEVVVVIGNFASGADISRDIAKVA--------------KEVHIASRASESDTY---------EKLPVPQNNLWMHSEI  258 (461)
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHHhC--------------CeEEEEEeecccccc---------ccCcCCCCceEECCcc
Confidence            36789999999999999999999887              899999886311110         1111123344555 56


Q ss_pred             EEEeC-CeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccC-CCCCCCCcc-ccCCCcccCC-CCCEEEeccccccCcCCCC
Q 023375           91 KDVDS-QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD-LPKSPGGRI-GIDEWLRVPS-VQDVFAVGDCSGYLESTGK  165 (283)
Q Consensus        91 ~~v~~-~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~-l~~~~~g~i-~Vd~~l~~~~-~~~VfaiGD~a~~~~~~~~  165 (283)
                      ..+.+ +.|+++||+++++|.||+|||.+++ +++...+ +..+. +++ ....+.=.+. .|++..+|=...       
T Consensus       259 ~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~-~~v~~Ly~~~f~~~~~p~LafiG~~~~-------  330 (461)
T PLN02172        259 DTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDE-NRVEPLYKHVFPPALAPGLSFIGLPAM-------  330 (461)
T ss_pred             cceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCC-CcchhhHHhhcCCCCCCcEEEEecccc-------
Confidence            66544 4699999999999999999999998 6655432 22222 222 1222221223 489999995432       


Q ss_pred             cCCCcchHHHHHHHHHHHHHHH
Q 023375          166 TVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                         ......+..|++.+|+-+.
T Consensus       331 ---~~~f~~~E~Qa~~~a~v~s  349 (461)
T PLN02172        331 ---GIQFVMFEIQSKWVAAVLS  349 (461)
T ss_pred             ---ccCchhHHHHHHHHHHHHc
Confidence               2234567889999887664

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.06  E-value=9.2e-10  Score=101.04  Aligned_cols=95  Identities=18%  Similarity=0.288  Sum_probs=72.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC----CCCCHHHH---------HHHHHHHHh
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDDRLR---------HYATTQLSK   80 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l----~~~~~~~~---------~~~~~~l~~   80 (283)
                      .++|||||||++|+++|..|++.+.            +.+|+++++....    |.++....         ..-.+.+.+
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~------------~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~   70 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGF------------TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQE   70 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCC------------CCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHH
Confidence            4689999999999999999987652            2789999886322    22322211         011345677


Q ss_pred             CCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .||+++.+ .|..++.+  .|++++|+++.||.+|+|||.+|.
T Consensus        71 ~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~  113 (396)
T PRK09754         71 NNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR  113 (396)
T ss_pred             CCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence            89999999 79888765  578888999999999999999986

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.94  E-value=4.6e-09  Score=95.23  Aligned_cols=94  Identities=22%  Similarity=0.319  Sum_probs=72.3

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---CCCC---------HHHHHHHHHHHHhCCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV   83 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---~~~~---------~~~~~~~~~~l~~~gV   83 (283)
                      +|||||||++|+.+|..|.+..           .++.+|+||+++...   +.++         +++.....+.+++.||
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv   69 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA   69 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence            5899999999999999886532           123899999986321   2211         2233345566778899


Q ss_pred             EEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           84 RLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        84 ~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +++.++|++|+.+  .|.+++|++++||.+|+|||.++.
T Consensus        70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~  108 (364)
T TIGR03169        70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP  108 (364)
T ss_pred             EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence            9998899999754  688899989999999999999987

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.90  E-value=2.2e-08  Score=89.29  Aligned_cols=93  Identities=20%  Similarity=0.276  Sum_probs=73.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-----------------------------   63 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-----------------------------   63 (283)
                      ...|+||||||+|+-+|..+++.+              .+|+|||.+ ++.                             
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G--------------~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~   68 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAG--------------RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGN   68 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcC--------------CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCc
Confidence            357999999999999999999887              788888875 331                             


Q ss_pred             ------------------------------------CC--CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEE
Q 023375           64 ------------------------------------SS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLIL  100 (283)
Q Consensus        64 ------------------------------------~~--~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~  100 (283)
                                                          |.  -...+.+.+.+.+++.||+++++ +|.+|+.+    .+.+
T Consensus        69 ~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t  148 (408)
T COG2081          69 GHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT  148 (408)
T ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc
Confidence                                                10  01245666778889999999999 89999876    3666


Q ss_pred             cCCcEEEeeEEEEcCCCCCc
Q 023375          101 NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       101 ~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+|+++.||.+|+|+|-...
T Consensus       149 ~~g~~i~~d~lilAtGG~S~  168 (408)
T COG2081         149 SSGETVKCDSLILATGGKSW  168 (408)
T ss_pred             CCCCEEEccEEEEecCCcCC
Confidence            78889999999999995443

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.88  E-value=2.9e-08  Score=91.40  Aligned_cols=157  Identities=17%  Similarity=0.148  Sum_probs=105.7

Q ss_pred             EEEccCcHHHHHH-HHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe
Q 023375           18 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD   94 (283)
Q Consensus        18 vVvGgG~~Gve~A-~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~   94 (283)
                      +|++.|..|+|.+ ..++++...          -+.+|++++.. +.+|.+  ++.+.+.+.+++.|++++++ +|.+++
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~  286 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE  286 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence            6899999999999 445432110          12899999876 677764  78889999999999999999 888886


Q ss_pred             C--CeE---EEcCC--cEEEeeEEEEcCCCCCch-hhhc--------cCCCC--C-------------C----CCccccC
Q 023375           95 S--QKL---ILNDG--TEVPYGLLVWSTGVGPST-LVKS--------LDLPK--S-------------P----GGRIGID  139 (283)
Q Consensus        95 ~--~~v---~~~~g--~~i~~d~vi~a~G~~~~~-~~~~--------~~l~~--~-------------~----~g~i~Vd  139 (283)
                      .  +.+   ...++  .++.+|.+|+|+|..... +..+        +++++  .             .    +-.+.+|
T Consensus       287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d  366 (422)
T PRK05329        287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD  366 (422)
T ss_pred             EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence            3  333   23344  358999999999987653 2110        12221  0             0    1136777


Q ss_pred             CCccc------CCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          140 EWLRV------PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       140 ~~l~~------~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                      +.|+.      +..+|+||+|++..-.++...  -.. .-+|+..|-.+|++|...
T Consensus       367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~--~~g-~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        367 ATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE--GCG-SGVALATALHAAEQIAEE  419 (422)
T ss_pred             CCcCcccCCCCeeccceEEeeehhcCCchHHh--CCC-chhHHHHHHHHHHHHHHh
Confidence            77775      247999999999975553110  011 127889999999988754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.88  E-value=1.1e-08  Score=95.30  Aligned_cols=94  Identities=22%  Similarity=0.443  Sum_probs=70.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC-------CCCC-----C--HHHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-------LSSF-----D--DRLRHYATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~-------l~~~-----~--~~~~~~~~~~l~~   80 (283)
                      ++|||||||++|+++|..|+++..            +.+|+||++++.       +|.+     +  .++.....+.+++
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~------------~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNK------------ELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIK   68 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCC------------CCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHH
Confidence            479999999999999999987642            279999998732       2211     1  1233344566888


Q ss_pred             CCCEEEeC-ceEEEeCC--eEEEcC---CcEEE--eeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQ--KLILND---GTEVP--YGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~--~v~~~~---g~~i~--~d~vi~a~G~~~~  120 (283)
                      .||+++.+ +|++|+.+  .|.+.+   ++++.  ||.+|+|||.+|.
T Consensus        69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~  116 (444)
T PRK09564         69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI  116 (444)
T ss_pred             CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence            99999988 89998754  566654   56666  9999999999986

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.87  E-value=1.2e-08  Score=94.63  Aligned_cols=97  Identities=25%  Similarity=0.333  Sum_probs=72.0

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---CCC---------CHHHHHHHHHH
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF---------DDRLRHYATTQ   77 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---~~~---------~~~~~~~~~~~   77 (283)
                      .+...++|||||||++|+.+|..|...              +.+|+||++.+..   |.+         ...+...+.+.
T Consensus         6 ~~~~~~~vVIvGgG~aGl~~a~~L~~~--------------~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~   71 (424)
T PTZ00318          6 ARLKKPNVVVLGTGWAGAYFVRNLDPK--------------KYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPA   71 (424)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHhCcC--------------CCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHH
Confidence            345668999999999999998877432              2899999986321   221         12233344566


Q ss_pred             HHhCCCEEEeCceEEEeCC--eEEE----------cCCcEEEeeEEEEcCCCCCc
Q 023375           78 LSKSGVRLVRGIVKDVDSQ--KLIL----------NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        78 l~~~gV~v~~~~V~~v~~~--~v~~----------~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+++++.++|++|+.+  .|++          ++|++++||.+|+|+|..+.
T Consensus        72 ~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~  126 (424)
T PTZ00318         72 LAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN  126 (424)
T ss_pred             hccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence            7778999988899999764  5766          45678999999999999986

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.83  E-value=1.5e-08  Score=91.92  Aligned_cols=96  Identities=27%  Similarity=0.437  Sum_probs=76.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCC-CCC---------CHHHHHHHHHHHHhC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EIL-SSF---------DDRLRHYATTQLSKS   81 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l-~~~---------~~~~~~~~~~~l~~~   81 (283)
                      .++|||||||+.|+++|..|....+            +.+|+||++.  .++ |.+         +.+....+.+.+++.
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~------------~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~   70 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLP------------DVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKS   70 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCC------------CCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhccc
Confidence            5799999999999999999986531            3899999986  232 222         234455566777756


Q ss_pred             C-CEEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCch
Q 023375           82 G-VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        82 g-V~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      + |+++.++|++|+.+  .|+++++.+++||.+|+++|..++.
T Consensus        71 ~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~  113 (405)
T COG1252          71 GNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY  113 (405)
T ss_pred             CceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence            5 99999999999765  7999998889999999999999984

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.82  E-value=3.6e-08  Score=93.44  Aligned_cols=89  Identities=13%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             ceEEEeCCeEEEcCCcEE-EeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccC--CCCCEEEeccccccCcCCC
Q 023375           89 IVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVP--SVQDVFAVGDCSGYLESTG  164 (283)
Q Consensus        89 ~V~~v~~~~v~~~~g~~i-~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~--~~~~VfaiGD~a~~~~~~~  164 (283)
                      .|+++++++|+++||+++ ++|.||+|||.+.. +++.+.-+... ++.+....++=.+  .+|++..+|=+..      
T Consensus       301 ~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~~------  373 (531)
T PF00743_consen  301 DIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQP------  373 (531)
T ss_dssp             -EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S--SSSSSEETTTEETETTSTTEEESS-SBS------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc------
Confidence            467778889999999875 69999999999887 77765433332 3344444433221  4588999996542      


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                         .-.....+..|++++|+-+.
T Consensus       374 ---~g~~fp~~ElQArw~a~v~s  393 (531)
T PF00743_consen  374 ---FGSIFPIFELQARWAARVFS  393 (531)
T ss_dssp             ---SS-HHHHHHHHHHHHHHHHT
T ss_pred             ---cccccccccccccccccccc
Confidence               12234567788888877553

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.82  E-value=3.7e-08  Score=91.82  Aligned_cols=92  Identities=22%  Similarity=0.318  Sum_probs=71.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCC------CC---------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD---------------------   67 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~------~~---------------------   67 (283)
                      -.|+||||||.|+++|..+++++              .+|+|+|+..+...      .|                     
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g   68 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAANHG--------------AKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYG   68 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcC
Confidence            36999999999999999999988              89999997432110      00                     


Q ss_pred             ---------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE-cCCcEEEeeEEEEcCCCCCc
Q 023375           68 ---------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        68 ---------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~-~~g~~i~~d~vi~a~G~~~~  120 (283)
                                           .++.+..++.+++.||+++.+++..++.+.+.. .+|+++.+|.+|+|||.+|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~  143 (446)
T TIGR01424        69 WTVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQ  143 (446)
T ss_pred             cCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCC
Confidence                                 123344556677889999988888888876655 46778999999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.79  E-value=5.3e-08  Score=92.40  Aligned_cols=95  Identities=15%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CCC-----------C-CCCHHHHHHHHH
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL-----------S-SFDDRLRHYATT   76 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~l-----------~-~~~~~~~~~~~~   76 (283)
                      ....+|+||||||+|+++|.++++.+              .+|++++..   ...           + ...+++.+.+.+
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~  275 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEE  275 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHH
Confidence            45679999999999999999999887              889998641   221           1 234677888888


Q ss_pred             HHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           77 QLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        77 ~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+++.||+++.+ +|++++.+    .+.+++|+++.+|.+|+|+|..+.
T Consensus       276 ~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~  324 (515)
T TIGR03140       276 HIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR  324 (515)
T ss_pred             HHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence            899999999998 89888643    466678889999999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.78  E-value=1.5e-08  Score=93.91  Aligned_cols=153  Identities=20%  Similarity=0.214  Sum_probs=104.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--C-CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      .++|+|||||.|++++|.....++.             .+|+.+.+.  . -....+........+...+.|++.... .
T Consensus       262 gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~  328 (457)
T COG0493         262 GKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQ  328 (457)
T ss_pred             CCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCC
Confidence            3899999999999999988877762             578877532  2 222222222344445556667665443 3


Q ss_pred             eEEEeC-----------CeEEEc--------------CC--cEEEeeEEEEcCCCCCchh--h-hccCCCCCCCCccccC
Q 023375           90 VKDVDS-----------QKLILN--------------DG--TEVPYGLLVWSTGVGPSTL--V-KSLDLPKSPGGRIGID  139 (283)
Q Consensus        90 V~~v~~-----------~~v~~~--------------~g--~~i~~d~vi~a~G~~~~~~--~-~~~~l~~~~~g~i~Vd  139 (283)
                      -.++..           ..+...              .|  .++++|+|+.+.|+.++..  . ...++..+..|++.++
T Consensus       329 ~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~  408 (457)
T COG0493         329 PKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVD  408 (457)
T ss_pred             ceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecc
Confidence            223221           111111              12  2578999999999988731  1 2225667888999999


Q ss_pred             CCc-ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          140 EWL-RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       140 ~~l-~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                      +.+ ++ +.|++|+.||+...         ......|+.+|+.+|+.|...
T Consensus       409 ~~~~~t-s~~~vfa~gD~~~g---------~~~vv~ai~eGr~aak~i~~~  449 (457)
T COG0493         409 ENLQQT-SIPGVFAGGDAVRG---------AALVVWAIAEGREAAKAIDKE  449 (457)
T ss_pred             cccccc-cCCCeeeCceeccc---------hhhhhhHHhhchHHHHhhhHH
Confidence            998 66 89999999999962         567788999999999999843

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.78  E-value=3.8e-08  Score=91.58  Aligned_cols=94  Identities=13%  Similarity=0.215  Sum_probs=66.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC---CC-CCCHHH----------HHH-HHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LS-SFDDRL----------RHY-ATTQLS   79 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~---l~-~~~~~~----------~~~-~~~~l~   79 (283)
                      ++|||||||+.|+.+|..|++..            ++.+|+||++++.   .+ .++.-+          ... .++..+
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~------------~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~   69 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLD------------KESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYD   69 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhC------------CCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHH
Confidence            58999999999999999998653            2389999998732   11 111111          111 123335


Q ss_pred             hCCCEEEeC-ceEEEeCC--eEEEcCC---c--EEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQ--KLILNDG---T--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~--~v~~~~g---~--~i~~d~vi~a~G~~~~  120 (283)
                      +.||+++.+ +|++|+.+  .|.+.++   +  +++||.+|+|||.+|+
T Consensus        70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~  118 (438)
T PRK13512         70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN  118 (438)
T ss_pred             hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence            679999987 89999865  5666543   2  4789999999999987

>PRK06116 glutathione reductase; Validated

Probab=98.77  E-value=4.7e-08  Score=91.26  Aligned_cols=91  Identities=26%  Similarity=0.433  Sum_probs=70.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD--------------------   68 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~--------------------   68 (283)
                      -.|+||||||.|+.+|..+++.+              .+|+|||++.+..      .+|.                    
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G--------------~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~   70 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYG--------------AKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGY   70 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhc
Confidence            47999999999999999999987              8999999753310      0000                    


Q ss_pred             -----------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           69 -----------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 -----------------------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                             .+.+...+.+.+.||+++.++++.++...|++ +|+++.+|.+|+|||.+|.
T Consensus        71 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~  144 (450)
T PRK06116         71 GFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPS  144 (450)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence                                   01122334466789999999877888888888 7788999999999999986

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.77  E-value=7.3e-08  Score=94.60  Aligned_cols=77  Identities=22%  Similarity=0.376  Sum_probs=62.5

Q ss_pred             cEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccC-CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHH
Q 023375          104 TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK  180 (283)
Q Consensus       104 ~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd-~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~  180 (283)
                      +.+++|+||++.|+..+  ...++++++.++++.|..- +.+.+ +.+.|||+|||-.     |    ......|+++|+
T Consensus      2040 e~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrr-----g----qslvvwai~egr 2109 (2142)
T KOG0399|consen 2040 EIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRR-----G----QSLVVWAIQEGR 2109 (2142)
T ss_pred             eeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccc-cccceeecccccC-----C----ceEEEEEehhhh
Confidence            36899999999999877  4667788888888776664 55666 8999999999986     2    456778999999


Q ss_pred             HHHHHHHHHh
Q 023375          181 YLFSLLNRIG  190 (283)
Q Consensus       181 ~~a~~i~~~~  190 (283)
                      .+|+.+....
T Consensus      2110 q~a~~vd~~~ 2119 (2142)
T KOG0399|consen 2110 QAARQVDELM 2119 (2142)
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.77  E-value=4.3e-08  Score=97.28  Aligned_cols=93  Identities=23%  Similarity=0.373  Sum_probs=71.8

Q ss_pred             EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC----CCC---------HHHHHHHHHHHHhCCC
Q 023375           17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD---------DRLRHYATTQLSKSGV   83 (283)
Q Consensus        17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~----~~~---------~~~~~~~~~~l~~~gV   83 (283)
                      |||||||++|+++|.+|.+...           .+.+|+||++.+..+    .++         +++.....+.+++.||
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~-----------~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv   69 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNR-----------HMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGI   69 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCC-----------CCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCC
Confidence            6899999999999999987641           237999999863221    121         1222223566788999


Q ss_pred             EEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           84 RLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        84 ~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +++++ +|++|+.+  .|++.+|++++||.+|+|||..|.
T Consensus        70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~  109 (785)
T TIGR02374        70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF  109 (785)
T ss_pred             EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC
Confidence            99999 89999865  688889999999999999999886

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.75  E-value=1e-07  Score=90.54  Aligned_cols=95  Identities=15%  Similarity=0.224  Sum_probs=77.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CC--------CC----CCCHHHHHHHHH
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATT   76 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~--------l~----~~~~~~~~~~~~   76 (283)
                      ....+|+|||||++|+.+|.++++.+              .+|++++..   ..        ++    ..+.++.+.+.+
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~  274 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEE  274 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHH
Confidence            34569999999999999999999887              888888752   11        11    134678888999


Q ss_pred             HHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           77 QLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        77 ~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+++.|++++.+ +|.+++.+    .|.+.+|+++.+|.+|+|+|..+.
T Consensus       275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r  323 (517)
T PRK15317        275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR  323 (517)
T ss_pred             HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence            999999999988 89888654    466678889999999999999875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.74  E-value=6.8e-08  Score=88.08  Aligned_cols=93  Identities=24%  Similarity=0.291  Sum_probs=68.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC----CCCC---------HHHHH-HHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFD---------DRLRH-YATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l----~~~~---------~~~~~-~~~~~l~~   80 (283)
                      ++|||||||++|+.+|..|.+..+            +.+|++|++....    |.++         .++.. ...+.+++
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~------------~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   70 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDA------------HIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQ   70 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCc------------CCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHh
Confidence            589999999999999999976542            3899999875211    2221         12222 23455677


Q ss_pred             CCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .||+++.+ +|++++.+  .|. .+++++.||.+|+|||.+|.
T Consensus        71 ~gv~~~~~~~V~~id~~~~~v~-~~~~~~~yd~LVlATG~~~~  112 (377)
T PRK04965         71 FNLRLFPHTWVTDIDAEAQVVK-SQGNQWQYDKLVLATGASAF  112 (377)
T ss_pred             CCCEEECCCEEEEEECCCCEEE-ECCeEEeCCEEEECCCCCCC
Confidence            89999988 89999865  355 46778999999999999886

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.74  E-value=8.7e-08  Score=95.47  Aligned_cols=96  Identities=20%  Similarity=0.312  Sum_probs=72.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC----CC--------CHHHHHHHHHHHHhCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SF--------DDRLRHYATTQLSKSG   82 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~----~~--------~~~~~~~~~~~l~~~g   82 (283)
                      ++|||||+|++|+.+|..|.+...          .++.+|++|++.+.++    .+        .+++.....+.+++.|
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g   73 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG   73 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence            589999999999999999986531          1238999998863322    11        1222333346678899


Q ss_pred             CEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           83 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        83 V~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |+++.+ +|.+++.+  .|.+.+|++++||.+|+|||..|.
T Consensus        74 I~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~  114 (847)
T PRK14989         74 IKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW  114 (847)
T ss_pred             CEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC
Confidence            999999 79999765  577788889999999999999886

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.74  E-value=5.7e-07  Score=77.67  Aligned_cols=158  Identities=17%  Similarity=0.212  Sum_probs=100.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------C------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------S------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------~------------------   65 (283)
                      ..|+|||||++|+-+|.+|++.+              .+|+++|+. .+..          .                  
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~   91 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY   91 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc
Confidence            58999999999999999999876              889999875 3210          0                  


Q ss_pred             ----------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC-e---EEEc-----------CCcEEEeeEEEEcCCC
Q 023375           66 ----------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ-K---LILN-----------DGTEVPYGLLVWSTGV  117 (283)
Q Consensus        66 ----------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~-~---v~~~-----------~g~~i~~d~vi~a~G~  117 (283)
                                .+..+...+.+...+.|++++.+ +|.++.  ++ .   +...           +..++.++.||.|+|.
T Consensus        92 ~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~  171 (257)
T PRK04176         92 KEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH  171 (257)
T ss_pred             eeecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence                      01234444556667789999998 787764  33 2   2221           2247899999999997


Q ss_pred             CCch---hhhccC---CC--------CCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHH-HHHHHH
Q 023375          118 GPST---LVKSLD---LP--------KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE-RQGKYL  182 (283)
Q Consensus       118 ~~~~---~~~~~~---l~--------~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~-~qg~~~  182 (283)
                      ...-   +.+..+   ..        .+......|+.+-++  +|++|+.|=+++-..  | .|+..-..-++ ..|+.+
T Consensus       172 ~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~--~-~~rmg~~fg~m~~sg~~~  246 (257)
T PRK04176        172 DAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVH--G-LPRMGPIFGGMLLSGKKV  246 (257)
T ss_pred             CcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhc--C-CCccCchhHhHHHhHHHH
Confidence            6651   212111   11        112224556666666  899999998775322  2 22222222333 679999


Q ss_pred             HHHHHHHhh
Q 023375          183 FSLLNRIGK  191 (283)
Q Consensus       183 a~~i~~~~~  191 (283)
                      |+.|...++
T Consensus       247 a~~~~~~~~  255 (257)
T PRK04176        247 AELILEKLK  255 (257)
T ss_pred             HHHHHHHhh
Confidence            998887664

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.70  E-value=4.1e-08  Score=91.84  Aligned_cols=88  Identities=23%  Similarity=0.326  Sum_probs=68.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------CC--CCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------SS--FDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~~--~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+|||||++|+++|..|++.+              .+|+++++. .+.       |.  ++.++.....+.+++.
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~  203 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL  203 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence            45679999999999999999999876              899999986 431       22  4667778888889999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      ||+++++ .+    ...+.+++.. +.+|.||+|||..
T Consensus       204 gv~~~~~~~v----~~~v~~~~~~-~~~d~vvlAtGa~  236 (457)
T PRK11749        204 GVEIRTNTEV----GRDITLDELR-AGYDAVFIGTGAG  236 (457)
T ss_pred             CCEEEeCCEE----CCccCHHHHH-hhCCEEEEccCCC
Confidence            9999998 44    1223333333 7899999999986

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.70  E-value=1.1e-07  Score=78.76  Aligned_cols=89  Identities=24%  Similarity=0.365  Sum_probs=62.6

Q ss_pred             EEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCC-CCC--------------CC----------C-----
Q 023375           18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL--------------SS----------F-----   66 (283)
Q Consensus        18 vVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~-~~l--------------~~----------~-----   66 (283)
                      +|||||++|+.+|..|.+.+              .+ |+++|++ .+.              |.          +     
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF   66 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred             CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence            69999999999999999887              56 8888875 431              11          0     


Q ss_pred             --------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           67 --------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        67 --------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                    .+++.+++++..++.+++++++ +|++++.+    .|++++++++.+|.||+|+|....
T Consensus        67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence                          1245678888889999999988 89988654    488888888999999999997433

...

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.67  E-value=1.8e-07  Score=87.11  Aligned_cols=92  Identities=22%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CCCC-------CCH--------------H---
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-------FDD--------------R---   69 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l~~-------~~~--------------~---   69 (283)
                      -+|+||||||.|+++|..+++.+              .+|+|||+++ .+..       .|.              .   
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g--------------~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~   69 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAG--------------KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMA   69 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCC--------------CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHH
Confidence            47999999999999999999987              8999999863 2110       111              1   


Q ss_pred             --------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcC---CcEEEeeEEEEcCCCCCc
Q 023375           70 --------LRHYATTQLSKSGVRLVRGIVKDVDSQKLILND---GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 --------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~---g~~i~~d~vi~a~G~~~~  120 (283)
                              +.....+.+.+.||+++.+....++...|.+.+   ..++.+|.||+|||.+|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~  131 (438)
T PRK07251         70 TKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSN  131 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCC
Confidence                    112223456778999998865556667776653   247999999999999986

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.66  E-value=2e-07  Score=93.27  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=68.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CCC--CCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LSS--FDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~~--~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+||||||+|+.+|..|++.+              .+|+|+|+. .+       .|.  ++.+......+.+.+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~  602 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH  602 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence            45689999999999999999999887              899999985 32       122  3455666666788889


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ||+++++ .+ .     +.+++.....+|.||+|||..+.
T Consensus       603 GVe~~~gt~V-d-----i~le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        603 GVKFEFGCSP-D-----LTVEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             CCEEEeCcee-E-----EEhhhheeccCCEEEECcCCCCC
Confidence            9999999 55 2     23334445669999999999864

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.65  E-value=2.2e-07  Score=85.29  Aligned_cols=92  Identities=18%  Similarity=0.294  Sum_probs=61.0

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------------------------C-----
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------S-----   65 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------------------------~-----   65 (283)
                      +|+|||||++|+-+|..+++.+              .+|+|+|++ ++..                        .     
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g--------------~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~   67 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKG--------------ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNP   67 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT----------------EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTT
T ss_pred             cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccch
Confidence            6899999999999999999877              889999887 4410                        0     


Q ss_pred             -C--------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEE
Q 023375           66 -F--------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LIL  100 (283)
Q Consensus        66 -~--------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~~  100 (283)
                       +                                      ..++.+.+.+.+++.||+++++ +|.++.  ++.   |.+
T Consensus        68 ~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~  147 (409)
T PF03486_consen   68 KFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT  147 (409)
T ss_dssp             TCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE
T ss_pred             HHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec
Confidence             0                                      1244566777788999999999 899985  444   666


Q ss_pred             cCCcEEEeeEEEEcCCCCCch
Q 023375          101 NDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus       101 ~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      ++++++.+|.||+|+|..+.+
T Consensus       148 ~~~~~~~a~~vILAtGG~S~p  168 (409)
T PF03486_consen  148 KNGGEYEADAVILATGGKSYP  168 (409)
T ss_dssp             TTTEEEEESEEEE----SSSG
T ss_pred             cCcccccCCEEEEecCCCCcc
Confidence            678899999999999987643

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.64  E-value=9.9e-08  Score=96.01  Aligned_cols=90  Identities=24%  Similarity=0.300  Sum_probs=72.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG   82 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~g   82 (283)
                      ..++|+||||||+|+.+|..|++.+              ++|+++|+. .+.       |  .++.++.+...+.+++.|
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~G  370 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLG  370 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhc
Confidence            4689999999999999999999887              999999985 322       3  346777788888899999


Q ss_pred             CEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCC-Cc
Q 023375           83 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS  120 (283)
Q Consensus        83 V~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~-~~  120 (283)
                      |+++++ .+    +..+++++.....||.|++|+|.. |.
T Consensus       371 v~f~~n~~v----G~dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        371 GRFVKNFVV----GKTATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             CeEEEeEEe----ccEEeHHHhccccCCEEEEeCCCCCCC
Confidence            999998 43    234666665566799999999995 54

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.64  E-value=3.1e-07  Score=86.32  Aligned_cols=94  Identities=19%  Similarity=0.294  Sum_probs=69.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH-------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD-------------------   68 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~-------------------   68 (283)
                      ..+++||||||.|+.+|..+++++              .+|+|||++.+..      ..|.                   
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G--------------~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~   69 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLG--------------LKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPF   69 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhc
Confidence            458999999999999999999987              8999999754210      0000                   


Q ss_pred             ------------H-----------HHHHHHHHHHhCCCEEEeCceEEEeCC-------eE--EEcCC--cEEEeeEEEEc
Q 023375           69 ------------R-----------LRHYATTQLSKSGVRLVRGIVKDVDSQ-------KL--ILNDG--TEVPYGLLVWS  114 (283)
Q Consensus        69 ------------~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~-------~v--~~~~g--~~i~~d~vi~a  114 (283)
                                  .           +.....+.+++.||+++.+.++.++.+       .+  .+.+|  +++.+|.+|+|
T Consensus        70 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViA  149 (472)
T PRK05976         70 GISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIA  149 (472)
T ss_pred             CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEe
Confidence                        0           112223446677999999987778776       44  44566  57999999999


Q ss_pred             CCCCCch
Q 023375          115 TGVGPST  121 (283)
Q Consensus       115 ~G~~~~~  121 (283)
                      ||.+|..
T Consensus       150 TGs~p~~  156 (472)
T PRK05976        150 TGSRPVE  156 (472)
T ss_pred             CCCCCCC
Confidence            9999863

>PRK10262 thioredoxin reductase; Provisional

Probab=98.63  E-value=4.1e-07  Score=81.08  Aligned_cols=94  Identities=18%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC------------CC-----CCHHHHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS-----FDDRLRHYAT   75 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l------------~~-----~~~~~~~~~~   75 (283)
                      +.++|+||||||+|+++|..+++++              .++++|+..+..            |.     ..+.+.+++.
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g--------------~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH   70 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHH
Confidence            4568999999999999999999877              677887642211            21     1234567777


Q ss_pred             HHHHhCCCEEEeCceEEEeC--CeEEEc-CCcEEEeeEEEEcCCCCCc
Q 023375           76 TQLSKSGVRLVRGIVKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        76 ~~l~~~gV~v~~~~V~~v~~--~~v~~~-~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.....++++..++|.+|+.  +.+++. +..++.+|.||+|+|..|+
T Consensus        71 ~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~  118 (321)
T PRK10262         71 EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR  118 (321)
T ss_pred             HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC
Confidence            88888888888776666653  333332 2347899999999999986

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.62  E-value=7.3e-07  Score=83.32  Aligned_cols=95  Identities=16%  Similarity=0.175  Sum_probs=69.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------------------------
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------------------------   63 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------------------------   63 (283)
                      ...++|+|||||++|+.+|.+|.+.+              .+|+++|++ .+.                           
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~   73 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSV   73 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhh
Confidence            44589999999999999999999876              778887763 210                           


Q ss_pred             ------------------CC---------------CCHHHHHHHHHHHHhCCCE--EEeC-ceEEEeCC----eEEEcCC
Q 023375           64 ------------------SS---------------FDDRLRHYATTQLSKSGVR--LVRG-IVKDVDSQ----KLILNDG  103 (283)
Q Consensus        64 ------------------~~---------------~~~~~~~~~~~~l~~~gV~--v~~~-~V~~v~~~----~v~~~~g  103 (283)
                                        |.               -..++.+++++..+..|++  +.++ +|++|+..    .|++.++
T Consensus        74 Y~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~  153 (461)
T PLN02172         74 YESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNS  153 (461)
T ss_pred             hhhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcC
Confidence                              10               0145777888888888988  7788 89998753    3555432


Q ss_pred             --c--EEEeeEEEEcCCC--CCc
Q 023375          104 --T--EVPYGLLVWSTGV--GPS  120 (283)
Q Consensus       104 --~--~i~~d~vi~a~G~--~~~  120 (283)
                        .  +..+|.||+|+|.  .|+
T Consensus       154 ~~~~~~~~~d~VIvAtG~~~~P~  176 (461)
T PLN02172        154 GGFSKDEIFDAVVVCNGHYTEPN  176 (461)
T ss_pred             CCceEEEEcCEEEEeccCCCCCc
Confidence              2  4579999999995  454

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.61  E-value=3e-06  Score=73.02  Aligned_cols=158  Identities=16%  Similarity=0.166  Sum_probs=99.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC----------CC-----------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------SS-----------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l----------~~-----------------   65 (283)
                      ...|+|||||++|+-+|..|++.+              .+|+++|+. .+.          +.                 
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~   86 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR   86 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC
Confidence            458999999999999999999876              888999886 321          00                 


Q ss_pred             -----------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC-----eEEEc-----------CCcEEEeeEEEEcC
Q 023375           66 -----------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ-----KLILN-----------DGTEVPYGLLVWST  115 (283)
Q Consensus        66 -----------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~-----~v~~~-----------~g~~i~~d~vi~a~  115 (283)
                                 ...++.+.+.+...+.|++++.+ .|.++.  ++     +|.+.           +..++.++.||.||
T Consensus        87 ~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdAT  166 (254)
T TIGR00292        87 YEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDAT  166 (254)
T ss_pred             eeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEee
Confidence                       01234455556667889999988 787764  22     34332           22478999999999


Q ss_pred             CCCCc--h-hhhccCCCCCC-------------CCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHH-HH
Q 023375          116 GVGPS--T-LVKSLDLPKSP-------------GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE-RQ  178 (283)
Q Consensus       116 G~~~~--~-~~~~~~l~~~~-------------~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~-~q  178 (283)
                      |....  . +.+..++....             .-...|+.+-++  +|++|+.|=.++-..  | .|+..-..-++ ..
T Consensus       167 G~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~--~-~~rmgp~fg~m~~s  241 (254)
T TIGR00292       167 GHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVH--G-LPRMGPIFGGMLLS  241 (254)
T ss_pred             cCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhc--C-CCCcCchHHHHHHh
Confidence            97654  2 22333322111             112444455555  899999998765221  2 22222222333 57


Q ss_pred             HHHHHHHHHHHh
Q 023375          179 GKYLFSLLNRIG  190 (283)
Q Consensus       179 g~~~a~~i~~~~  190 (283)
                      |+.+|+.|...+
T Consensus       242 g~~~a~~~~~~~  253 (254)
T TIGR00292       242 GKHVAEQILEKL  253 (254)
T ss_pred             hHHHHHHHHHHh
Confidence            999998876554

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06847 hypothetical protein; Provisional

Probab=98.61  E-value=5.9e-07  Score=81.64  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+.+.+.+.+.+.|++++.+ +|++++.+    .+.+.+|+++.+|.||.|.|..+.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~  164 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK  164 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence            355666777777889999999 88888643    366778999999999999998775

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.61  E-value=3.6e-07  Score=85.34  Aligned_cols=91  Identities=22%  Similarity=0.360  Sum_probs=67.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------CC--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~~--------------------   65 (283)
                      -.|+||||||.|+++|..+++.+              .+|+|||+..+.         |.                    
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g   68 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHG--------------AKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYG   68 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcC
Confidence            47999999999999999999987              899999974321         10                    


Q ss_pred             --------CC-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           66 --------FD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        66 --------~~-~-----------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                              ++ +           .+.+.....+++.||+++.+...-.+++.|.+ +++++.+|.+|+|||.+|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~  142 (450)
T TIGR01421        69 FYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPS  142 (450)
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence                    00 0           12223445577789999998543345556665 5678999999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.59  E-value=4.4e-07  Score=85.04  Aligned_cols=92  Identities=21%  Similarity=0.373  Sum_probs=68.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCC---------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFD---------------------   67 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~---------------------   67 (283)
                      -+|+||||||.|+.+|..+++.+              .+|.++|+..+..      ..|                     
T Consensus         5 yDvvVIGaGpaG~~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g   70 (462)
T PRK06416          5 YDVIVIGAGPGGYVAAIRAAQLG--------------LKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFG   70 (462)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcC
Confidence            57999999999999999999987              8999999754211      001                     


Q ss_pred             ----------HHHHHH-----------HHHHHHhCCCEEEeCceEEEeCCeEEEc--C-CcEEEeeEEEEcCCCCCc
Q 023375           68 ----------DRLRHY-----------ATTQLSKSGVRLVRGIVKDVDSQKLILN--D-GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        68 ----------~~~~~~-----------~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~-g~~i~~d~vi~a~G~~~~  120 (283)
                                .++.++           +...+++.||+++.++++.++++.+...  + ++++.+|.+|+|||.+|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~  147 (462)
T PRK06416         71 IKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPR  147 (462)
T ss_pred             cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence                      111222           3345667899999997777777766654  3 368999999999999986

>PLN02463 lycopene beta cyclase

Probab=98.58  E-value=4.8e-07  Score=84.12  Aligned_cols=102  Identities=25%  Similarity=0.447  Sum_probs=72.7

Q ss_pred             CCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC--CCCC-C--------------
Q 023375            4 AGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSS-F--------------   66 (283)
Q Consensus         4 ~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~--~l~~-~--------------   66 (283)
                      |..|+ .+....+|+|||||++|+.+|..|++.+              .+|.++|+..  ..|. .              
T Consensus        19 ~~~~~-~~~~~~DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~   83 (447)
T PLN02463         19 PRFDP-SKSRVVDLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLD   83 (447)
T ss_pred             cCCCC-ccccCceEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHH
Confidence            33444 2344469999999999999999999766              7788887642  1111 0              


Q ss_pred             -----------------------------CHHHHHHHHHHHHhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEE
Q 023375           67 -----------------------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVW  113 (283)
Q Consensus        67 -----------------------------~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~  113 (283)
                                                   ...+.+.+.+.+.+.||+++..+|++|+.+    .|++++|+++.+|.||.
T Consensus        84 ~l~~~w~~~~v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~  163 (447)
T PLN02463         84 CLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLD  163 (447)
T ss_pred             HHHhhCCCcEEEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEE
Confidence                                         122334555556678999986688888643    47778898999999999


Q ss_pred             cCCCCCc
Q 023375          114 STGVGPS  120 (283)
Q Consensus       114 a~G~~~~  120 (283)
                      |+|..+.
T Consensus       164 AdG~~s~  170 (447)
T PLN02463        164 ATGFSRC  170 (447)
T ss_pred             CcCCCcC
Confidence            9998764

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.6e-06  Score=75.23  Aligned_cols=93  Identities=24%  Similarity=0.379  Sum_probs=72.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCCCC------------CC-----CCCHHHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LS-----SFDDRLRHYAT   75 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~~~------------l~-----~~~~~~~~~~~   75 (283)
                      ...|+||||||+|+.+|.++++.+              .+ +.+++....            .|     ...+++.+...
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~   68 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMK   68 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHH
Confidence            357999999999999999999876              45 555554211            11     24578888888


Q ss_pred             HHHHhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch
Q 023375           76 TQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        76 ~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      +.....++++....|.+++..    .|.+++++ +.++.||+|||..+..
T Consensus        69 ~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          69 EQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             HHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence            888899999998878888765    46666776 9999999999998873

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.54  E-value=8.1e-07  Score=85.08  Aligned_cols=91  Identities=21%  Similarity=0.325  Sum_probs=70.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC------------CC----CCHHHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQL   78 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l------------~~----~~~~~~~~~~~~l   78 (283)
                      ..|+||||||+|+.+|..|++.+              .+|+|||++++.            |.    .++.+.+++.+.+
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~   70 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQA   70 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence            58999999999999999999876              899999975321            11    1246677777888


Q ss_pred             HhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           79 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ++.|++++...|++++.+    .+.+.++ ++.++.+|+|||..|.
T Consensus        71 ~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~  115 (555)
T TIGR03143        71 QDFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR  115 (555)
T ss_pred             HHcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence            889999976678887643    2444444 6899999999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.54  E-value=2.2e-07  Score=86.77  Aligned_cols=91  Identities=23%  Similarity=0.298  Sum_probs=68.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+|||||++|+++|..|++.+              .+|+++++. .+       .|  .++.++.....+.+++.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~  196 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL  196 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence            34579999999999999999999876              899999985 33       12  25667777777889999


Q ss_pred             CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCC-CCc
Q 023375           82 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS  120 (283)
Q Consensus        82 gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~-~~~  120 (283)
                      ||+++++.+.   ...+.+++. ...+|.||+|+|. .|.
T Consensus       197 gv~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       197 GVTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             CcEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence            9999998421   223444333 3469999999998 454

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.54  E-value=9.7e-07  Score=82.83  Aligned_cols=92  Identities=23%  Similarity=0.391  Sum_probs=67.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD--------------------   68 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~--------------------   68 (283)
                      ++++|||+|+.|+++|..+++.+              .+|++||++++-.      ..|.                    
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g--------------~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g   67 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLG--------------ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELG   67 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999887              8999999754210      0000                    


Q ss_pred             --------------H-----------HHHHHHHHHHhCCCEEEeCceEE----EeCCeEEE--cCCc--EEEeeEEEEcC
Q 023375           69 --------------R-----------LRHYATTQLSKSGVRLVRGIVKD----VDSQKLIL--NDGT--EVPYGLLVWST  115 (283)
Q Consensus        69 --------------~-----------~~~~~~~~l~~~gV~v~~~~V~~----v~~~~v~~--~~g~--~i~~d~vi~a~  115 (283)
                                    .           +.+...+.+++.||+++.++++.    ++++.++.  .+|+  ++.+|.||+||
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViAT  147 (466)
T PRK07845         68 IRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIAT  147 (466)
T ss_pred             cccccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcC
Confidence                          0           12234455777899999996655    55565544  4665  79999999999


Q ss_pred             CCCCc
Q 023375          116 GVGPS  120 (283)
Q Consensus       116 G~~~~  120 (283)
                      |.+|.
T Consensus       148 Gs~p~  152 (466)
T PRK07845        148 GASPR  152 (466)
T ss_pred             CCCCC
Confidence            99986

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.53  E-value=1.2e-06  Score=82.05  Aligned_cols=92  Identities=23%  Similarity=0.344  Sum_probs=68.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------CCCHH------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------SFDDR------------------   69 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------~~~~~------------------   69 (283)
                      ..|+|||||++|+.+|..|++.+              .+|++||+. .+..      ..+.+                  
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G--------------~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~   71 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLG--------------KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLY   71 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhh
Confidence            57999999999999999999987              899999985 4321      01110                  


Q ss_pred             ------------------------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCCc--EEEeeEEEEcCCCCCc
Q 023375           70 ------------------------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ------------------------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~d~vi~a~G~~~~  120 (283)
                                              ..+...+.+++.||+++.+++..++.+.++.  .+|+  ++.+|.+|+|||.+|.
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~  150 (461)
T PRK05249         72 SSYRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPY  150 (461)
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence                                    1122334567789999998776677776544  4554  7899999999999986

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.52  E-value=7.6e-07  Score=82.92  Aligned_cols=92  Identities=17%  Similarity=0.313  Sum_probs=65.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-------CCCHH-----------H-----
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-------SFDDR-----------L-----   70 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-------~~~~~-----------~-----   70 (283)
                      -.|+|||||+.|+.+|..|++.+              .+|+|||++ ..+.       .++..           .     
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g--------------~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~   69 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAG--------------WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQ   69 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCC--------------CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHH
Confidence            47999999999999999999887              899999986 2211       11111           0     


Q ss_pred             -----HHHH----HHHHHh-CCCEEEeCceEEEeCCeEE--EcCCc-EEEeeEEEEcCCCCCc
Q 023375           71 -----RHYA----TTQLSK-SGVRLVRGIVKDVDSQKLI--LNDGT-EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        71 -----~~~~----~~~l~~-~gV~v~~~~V~~v~~~~v~--~~~g~-~i~~d~vi~a~G~~~~  120 (283)
                           .+.+    .+.+.+ .||+++.+++..++.+.+.  ..+++ ++.+|.+|+|||.+|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~  132 (441)
T PRK08010         70 RKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV  132 (441)
T ss_pred             HHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC
Confidence                 0111    122333 3899998887778777554  45664 6999999999999986

>PRK06370 mercuric reductase; Validated

Probab=98.51  E-value=1.2e-06  Score=82.22  Aligned_cols=91  Identities=20%  Similarity=0.298  Sum_probs=67.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD--------------------   68 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~--------------------   68 (283)
                      ..|+||||||.|+++|..+++.+              .+|+|||+..+..      ..|.                    
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G--------------~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g   71 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLG--------------MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYG   71 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcC
Confidence            58999999999999999999987              8999999753211      0010                    


Q ss_pred             ------------H-----------HHHHHHHHHHhC-CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           69 ------------R-----------LRHYATTQLSKS-GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ------------~-----------~~~~~~~~l~~~-gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                  .           +.......+++. ||+++.+....++++.|++ +++++.+|.+|+|||.+|.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~  146 (463)
T PRK06370         72 VSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAA  146 (463)
T ss_pred             cccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCC
Confidence                        0           112334456666 9999988544556667776 4678999999999999987

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.50  E-value=1.5e-06  Score=78.77  Aligned_cols=88  Identities=28%  Similarity=0.425  Sum_probs=64.3

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCC-----CCC----------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EIL-----SSF----------------------   66 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l-----~~~----------------------   66 (283)
                      +|+|||||.+|+|+|..+++.+              .+|.|+...  .+.     |.+                      
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~   66 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA   66 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence            5899999999999999999998              899999543  221     110                      


Q ss_pred             --------------------------C-HHHHHHHHHHHHh-CCCEEEeCceEEEeC--C---eEEEcCCcEEEeeEEEE
Q 023375           67 --------------------------D-DRLRHYATTQLSK-SGVRLVRGIVKDVDS--Q---KLILNDGTEVPYGLLVW  113 (283)
Q Consensus        67 --------------------------~-~~~~~~~~~~l~~-~gV~v~~~~V~~v~~--~---~v~~~~g~~i~~d~vi~  113 (283)
                                                + ......+.+.+++ .+++++.++|+++..  +   +|.+.+|+++.+|.||+
T Consensus        67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl  146 (392)
T PF01134_consen   67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL  146 (392)
T ss_dssp             HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred             HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence                                      0 2345566677776 689998778988853  2   68889999999999999


Q ss_pred             cCCC
Q 023375          114 STGV  117 (283)
Q Consensus       114 a~G~  117 (283)
                      |||.
T Consensus       147 aTGt  150 (392)
T PF01134_consen  147 ATGT  150 (392)
T ss_dssp             -TTT
T ss_pred             eccc
Confidence            9998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.48  E-value=1.5e-06  Score=81.70  Aligned_cols=92  Identities=21%  Similarity=0.306  Sum_probs=66.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------CCCH-------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------SFDD-------------------   68 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------~~~~-------------------   68 (283)
                      ..|+|||||+.|+.+|..+++.+              .+|+|||+. .+..      .+|.                   
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~   70 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLG--------------LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEH   70 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhc
Confidence            58999999999999999999987              899999975 3321      1111                   


Q ss_pred             ------------HHH-----------HHHHHHHHhCCCEEEeCceEEEeCCeEEEc--CC--cEEEeeEEEEcCCCCCc
Q 023375           69 ------------RLR-----------HYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ------------~~~-----------~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~d~vi~a~G~~~~  120 (283)
                                  ++.           ......+++.||+++.+...-++++.+.+.  +|  +++.+|.+|+|||.+|.
T Consensus        71 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         71 GIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             CcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence                        111           111233566799999886666677766553  55  47999999999999986

>PRK12831 putative oxidoreductase; Provisional

Probab=98.48  E-value=3.5e-07  Score=85.65  Aligned_cols=91  Identities=22%  Similarity=0.401  Sum_probs=67.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC---C----CC--CCH-HHHHHHHHHHHh
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI---L----SS--FDD-RLRHYATTQLSK   80 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~---l----~~--~~~-~~~~~~~~~l~~   80 (283)
                      ...++|+||||||+|+++|..|++.+              .+|+++|+. .+   +    |.  ++. ++.....+.+++
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~  203 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK  203 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence            46689999999999999999999887              899999975 32   1    22  233 366666788899


Q ss_pred             CCCEEEeC-ceEEEeCCeEEEcCC-cEEEeeEEEEcCCC-CCc
Q 023375           81 SGVRLVRG-IVKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~~v~~~~g-~~i~~d~vi~a~G~-~~~  120 (283)
                      .||+++++ .+.    ..+.+++. +++.+|.||+|+|. .|.
T Consensus       204 ~gv~i~~~~~v~----~~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        204 LGVKIETNVVVG----KTVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             cCCEEEcCCEEC----CcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence            99999998 442    22333332 34679999999998 454

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.48  E-value=3.9e-07  Score=90.34  Aligned_cols=92  Identities=23%  Similarity=0.422  Sum_probs=70.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+|||||++|+.+|..|++.+              .+|+++++. .+       .|  .++.++.+...+.+++.
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~  494 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL  494 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence            45679999999999999999999887              899999974 22       12  23566777777888999


Q ss_pred             CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCC-CCc
Q 023375           82 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS  120 (283)
Q Consensus        82 gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~-~~~  120 (283)
                      ||+++++...   ...+++++..+..||.||+|+|. .|.
T Consensus       495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence            9999998321   23444544445679999999998 455

>TIGR02053 MerA mercuric reductase

Probab=98.47  E-value=1.1e-06  Score=82.28  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=68.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCC------CC----------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD----------------------   67 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~------~~----------------------   67 (283)
                      .|+||||||.|+.+|..+++.+              .+|+|||+..+...      .|                      
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g--------------~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~   67 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELG--------------ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGL   67 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccc
Confidence            5899999999999999999987              89999997432211      00                      


Q ss_pred             ---------------HHHHHH-----HHHHHHhCCCEEEeCceEEEeCCeEEEcCCc-EEEeeEEEEcCCCCCc
Q 023375           68 ---------------DRLRHY-----ATTQLSKSGVRLVRGIVKDVDSQKLILNDGT-EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        68 ---------------~~~~~~-----~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~-~i~~d~vi~a~G~~~~  120 (283)
                                     .++.+.     ..+.+++.||+++.+++..+++..|.+++|+ .+.+|.+|+|||.+|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~  141 (463)
T TIGR02053        68 AATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPA  141 (463)
T ss_pred             cCCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCC
Confidence                           011111     2345677899999887766777788887764 6899999999999986

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.47  E-value=8.2e-07  Score=89.21  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+||||||+|+.+|..|++.+              .+|+|+|+. .+       .|  .++.+......+.+.+.
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~  600 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFH  600 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhc
Confidence            34579999999999999999999887              899999985 32       12  23455666666778889


Q ss_pred             CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ||+++++.-.     .+.+++.....+|.||+|+|..+.
T Consensus       601 GVe~~~g~~~-----d~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       601 GVEFKYGCSP-----DLTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             CcEEEEeccc-----ceEhhhhhcccccEEEECCCCCCC
Confidence            9999987211     122333345669999999999754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.45  E-value=5.1e-07  Score=81.61  Aligned_cols=93  Identities=16%  Similarity=0.183  Sum_probs=64.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------CCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------FDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~---------~~~~~~~~~~~~l~~~   81 (283)
                      +..++|+|||+|++|+++|..|++.+              .+|+++++. .+...         .+.+......+.+.+.
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEA   81 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhC
Confidence            35579999999999999999999876              899999986 43211         2333334455667778


Q ss_pred             CCEEEeC-ceEEEeC------CeEE--E--cCCcEEEeeEEEEcCCCC
Q 023375           82 GVRLVRG-IVKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        82 gV~v~~~-~V~~v~~------~~v~--~--~~g~~i~~d~vi~a~G~~  118 (283)
                      |++++.+ .+..+..      +...  .  .++..+.+|.||+|+|..
T Consensus        82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW  129 (352)
T ss_pred             CeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence            9999988 5644322      1111  1  112247899999999984

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.44  E-value=4.7e-07  Score=84.80  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=64.9

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CCC--CHHHHHHHHHHHH
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SSF--DDRLRHYATTQLS   79 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~~--~~~~~~~~~~~l~   79 (283)
                      ....++|+||||||+|+.+|..|+...            .+++|+|+|+. .+.        |..  ...+.....+.+.
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~   90 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVAT   90 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHH
Confidence            345689999999999999999998632            12899999986 332        221  1234455666778


Q ss_pred             hCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+|+++.+ .|    +..+.+++-. ..||.||+|+|..+.
T Consensus        91 ~~~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852         91 DDRVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             HCCeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence            889999887 55    2234443332 469999999999863

>PLN02546 glutathione reductase

Probab=98.44  E-value=2.2e-06  Score=81.92  Aligned_cols=91  Identities=25%  Similarity=0.319  Sum_probs=70.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC----------CCCC---------C-----------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----------NEIL---------S-----------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~----------~~~l---------~-----------   64 (283)
                      -.|+|||||+.|+++|..+++++              .+|.|+|+          +.+.         |           
T Consensus        80 yDvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~  145 (558)
T PLN02546         80 FDLFTIGAGSGGVRASRFASNFG--------------ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYS  145 (558)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHH
Confidence            57999999999999999999988              99999994          1110         0           


Q ss_pred             -------CCC----------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcC
Q 023375           65 -------SFD----------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWST  115 (283)
Q Consensus        65 -------~~~----------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~  115 (283)
                             .+.                      .++.....+.|++.||+++.++++.++.+.|.+ +|+++.+|.||+||
T Consensus       146 ~~~~~~~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIAT  224 (558)
T PLN02546        146 HEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAV  224 (558)
T ss_pred             HHHHhhhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeC
Confidence                   000                      012334455577889999999888888888877 67789999999999


Q ss_pred             CCCCc
Q 023375          116 GVGPS  120 (283)
Q Consensus       116 G~~~~  120 (283)
                      |.+|.
T Consensus       225 Gs~p~  229 (558)
T PLN02546        225 GGRPF  229 (558)
T ss_pred             CCCCC
Confidence            99986

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.43  E-value=1.5e-06  Score=79.18  Aligned_cols=93  Identities=23%  Similarity=0.298  Sum_probs=65.0

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CCC---------CCCHHHHH-------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS---------SFDDRLRH-------------   72 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l~---------~~~~~~~~-------------   72 (283)
                      .|+|||||++|+.+|..|++..            ++.+|.++|+.. +.+         .+++....             
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~------------~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~   68 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRAR------------PDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGY   68 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcC------------CCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCC
Confidence            4899999999999999998651            128999998863 322         11111100             


Q ss_pred             ---------------------HHHHH-HHhCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           73 ---------------------YATTQ-LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        73 ---------------------~~~~~-l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                           .+.+. +++.+..++.+ +|+++++++|++++|+++.+|.||.|.|..+.
T Consensus        69 ~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        69 EVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             EEECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCC
Confidence                                 11112 23334446667 89999888899999999999999999998875

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK07236 hypothetical protein; Provisional

Probab=98.43  E-value=1.6e-06  Score=79.27  Aligned_cols=94  Identities=20%  Similarity=0.184  Sum_probs=65.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC------CCHHHHHHHHH---------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRLRHYATT---------   76 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~------~~~~~~~~~~~---------   76 (283)
                      ...+|+|||||++|+.+|..|++.+              .+|+|+|+. ...+.      +.+...+.+.+         
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~   70 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI   70 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc
Confidence            3478999999999999999999877              889999876 33221      12222222111         


Q ss_pred             ----------------------------------HHHh--CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcC
Q 023375           77 ----------------------------------QLSK--SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWST  115 (283)
Q Consensus        77 ----------------------------------~l~~--~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~  115 (283)
                                                        .|.+  .+++++.+ +|++++.+    .+++++|+++.+|.||.|-
T Consensus        71 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgAD  150 (386)
T PRK07236         71 GVPSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGAD  150 (386)
T ss_pred             ccCccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECC
Confidence                                              1111  13567778 78888643    3677899999999999999


Q ss_pred             CCCCc
Q 023375          116 GVGPS  120 (283)
Q Consensus       116 G~~~~  120 (283)
                      |....
T Consensus       151 G~~S~  155 (386)
T PRK07236        151 GGRST  155 (386)
T ss_pred             CCCch
Confidence            98665

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.42  E-value=1e-05  Score=66.85  Aligned_cols=158  Identities=16%  Similarity=0.231  Sum_probs=95.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------CC-------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FD-------------------   67 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------~~-------------------   67 (283)
                      ..|+|||+||+|+.+|.+|++.+              .+|.++|+. .+...       |+                   
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~y   96 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRY   96 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcc
Confidence            58999999999999999999887              999999986 44211       11                   


Q ss_pred             ------------HHHHHHHHHHHHhCCCEEEeC-ceEEE--eCC----eEEEc-----------CCcEEEeeEEEEcCCC
Q 023375           68 ------------DRLRHYATTQLSKSGVRLVRG-IVKDV--DSQ----KLILN-----------DGTEVPYGLLVWSTGV  117 (283)
Q Consensus        68 ------------~~~~~~~~~~l~~~gV~v~~~-~V~~v--~~~----~v~~~-----------~g~~i~~d~vi~a~G~  117 (283)
                                  .++...+...--+.|++++.. .|+++  .++    +|.+.           |--.++++.||=+||.
T Consensus        97 e~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH  176 (262)
T COG1635          97 EEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH  176 (262)
T ss_pred             eecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence                        111112222223457777777 66665  222    22221           2347899999999998


Q ss_pred             CCc--hhhh-cc---CCCC--------CCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHH-HHHHHHH
Q 023375          118 GPS--TLVK-SL---DLPK--------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA-ERQGKYL  182 (283)
Q Consensus       118 ~~~--~~~~-~~---~l~~--------~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A-~~qg~~~  182 (283)
                      ...  .++. ..   +.++        +..-.+.|+.+.++  +|++|++|=+++-..  | .|+..-..-+ ...|+.+
T Consensus       177 da~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~--G-~pRMGPiFGgMllSGkka  251 (262)
T COG1635         177 DAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVH--G-LPRMGPIFGGMLLSGKKA  251 (262)
T ss_pred             chHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhc--C-CcccCchhhhhhhchHHH
Confidence            775  2222 11   2221        11123556666665  899999998664221  1 1221112223 3679999


Q ss_pred             HHHHHHHhh
Q 023375          183 FSLLNRIGK  191 (283)
Q Consensus       183 a~~i~~~~~  191 (283)
                      |+.+...++
T Consensus       252 Ae~i~e~L~  260 (262)
T COG1635         252 AEEILEKLK  260 (262)
T ss_pred             HHHHHHHhh
Confidence            988776654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.41  E-value=7.2e-07  Score=90.57  Aligned_cols=91  Identities=19%  Similarity=0.385  Sum_probs=68.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKSG   82 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~g   82 (283)
                      ..++|+||||||+|+.+|.+|++.+              .+|+|+++. .+       .|  .++.++.....+.+++.|
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G  494 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG  494 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence            4679999999999999999999987              899999986 32       12  246778888888899999


Q ss_pred             CEEEeCceEEEeCCeEEEcCC-cEEEeeEEEEcCCCC-Cc
Q 023375           83 VRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGVG-PS  120 (283)
Q Consensus        83 V~v~~~~V~~v~~~~v~~~~g-~~i~~d~vi~a~G~~-~~  120 (283)
                      |+++++.+.   +..+++++- +...+|.||+|||.. |.
T Consensus       495 v~~~~~~~v---g~~~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        495 VKIETNKVI---GKTFTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             CEEEeCCcc---CCccCHHHHhhccCCCEEEEecCCCCCC
Confidence            999998432   122222221 124599999999985 44

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.38  E-value=3.1e-06  Score=79.26  Aligned_cols=91  Identities=22%  Similarity=0.372  Sum_probs=64.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH---------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD---------------------   68 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~---------------------   68 (283)
                      .|+|||||+.|+.+|..|++.+              .+|++||++.+..      .+|.                     
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G--------------~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~   68 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLG--------------LKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGI   68 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCC
Confidence            6999999999999999999887              8999999843311      0111                     


Q ss_pred             ----------HH-----------HHHHHHHHHhCCCEEEeCceEEEeCCeEEEc--CC-cEEEeeEEEEcCCCCCc
Q 023375           69 ----------RL-----------RHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG-TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ----------~~-----------~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g-~~i~~d~vi~a~G~~~~  120 (283)
                                .+           .......+++.||+++.+++..+++..+...  +| .++.+|.+|+|||.+|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~  144 (461)
T TIGR01350        69 EVENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPR  144 (461)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCC
Confidence                      00           0111223456688888886666666665554  33 47999999999999886

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=98.37  E-value=2.2e-06  Score=72.31  Aligned_cols=54  Identities=30%  Similarity=0.458  Sum_probs=46.4

Q ss_pred             EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375          105 EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      .+.+|.+++++|+.|+ ++.-...+...++|.+.||+.|++ +.|++|++||.+..
T Consensus       268 qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvctt  322 (334)
T KOG2755|consen  268 QLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT  322 (334)
T ss_pred             eeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccc-cccceeeecceecc
Confidence            5779999999999999 555455566778899999999999 99999999998863

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.36  E-value=1.5e-06  Score=79.05  Aligned_cols=96  Identities=26%  Similarity=0.424  Sum_probs=74.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCC-----------HHHHHHHHHHHHhC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD-----------DRLRHYATTQLSKS   81 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~-----------~~~~~~~~~~l~~~   81 (283)
                      ..++|+|||||+.|.-++..+...+.            .-+++++.+..++|...           ..+.....+.++++
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~------------~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~  140 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGF------------TERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEK  140 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCC------------CcceEEEeccccCcccchhcccceeeccccccccChhhHhhc
Confidence            35799999999997767666666553            27888888765554333           34455566788999


Q ss_pred             CCEEEeC-ceEEEe--CCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~--~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ||+++++ .|+.++  .+.+.+.+|++++++.+++|||..+.
T Consensus       141 gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~  182 (478)
T KOG1336|consen  141 GIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAK  182 (478)
T ss_pred             CceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccc
Confidence            9999999 888776  45899999999999999999999555

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.35  E-value=6e-06  Score=82.18  Aligned_cols=58  Identities=14%  Similarity=0.155  Sum_probs=41.0

Q ss_pred             cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHH
Q 023375          104 TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF  183 (283)
Q Consensus       104 ~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a  183 (283)
                      .+++||+||+|+|..|+....                      ..++-.+||+--        ....+...|+.+|+.++
T Consensus       713 ~~i~~~~vi~A~G~~~~~~~~----------------------~~~~s~~~d~~~--------~f~Gtvv~A~as~k~~~  762 (1028)
T PRK06567        713 NDIKTKTVIMAIGIENNTQFD----------------------EDKYSYFGDCNP--------KYSGSVVKALASSKEGY  762 (1028)
T ss_pred             ccccCCEEEEecccCCccccc----------------------ccccccccCCCC--------ccccHHHHHHHHHHhHH
Confidence            368999999999999984320                      011234565542        12346778999999999


Q ss_pred             HHHHHHhh
Q 023375          184 SLLNRIGK  191 (283)
Q Consensus       184 ~~i~~~~~  191 (283)
                      .+|.+.+.
T Consensus       763 ~~i~~~l~  770 (1028)
T PRK06567        763 DAINKKLI  770 (1028)
T ss_pred             HHHHHHHh
Confidence            99988775

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.34  E-value=1.6e-06  Score=81.37  Aligned_cols=89  Identities=19%  Similarity=0.274  Sum_probs=67.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG   82 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~g   82 (283)
                      ..++|+|||||++|+++|..|+..+              .+|+++++. .+.       |  .++.++.....+.+++.|
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G  205 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG  205 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence            5579999999999999999999876              899999986 331       2  246677777778899999


Q ss_pred             CEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           83 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        83 V~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |+++.+ .+..    .+.+++ ....+|.||+|+|..+.
T Consensus       206 v~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       206 IEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             CEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence            999988 5521    122221 12469999999999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.34  E-value=4e-06  Score=75.03  Aligned_cols=57  Identities=21%  Similarity=0.338  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCCchhhhccCC
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL  128 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l  128 (283)
                      ...+.+.+++.|++++.+ +|+++..  +.   |.+++|+ +.+|.||+|+|.....+...++.
T Consensus       150 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~  212 (358)
T PF01266_consen  150 IQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGL  212 (358)
T ss_dssp             HHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTT
T ss_pred             hhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccc
Confidence            334445556889999999 8998864  33   6778887 99999999999876666666654

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.33  E-value=4.6e-06  Score=78.08  Aligned_cols=91  Identities=20%  Similarity=0.333  Sum_probs=65.8

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------C------------------C---
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S------------------S---   65 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~------------------~---   65 (283)
                      +|+|||||+.|+.+|..+++.+              .+|++||++.+.         |                  .   
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g--------------~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~   67 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNG--------------KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGI   67 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCc
Confidence            7999999999999999999987              899999985321         1                  0   


Q ss_pred             --------CC-HHHH-----------HHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCC-cEEEeeEEEEcCCCCCc
Q 023375           66 --------FD-DRLR-----------HYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG-TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        66 --------~~-~~~~-----------~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g-~~i~~d~vi~a~G~~~~  120 (283)
                              .+ +.+.           +.....+++.+|+++.+++.-++++.+..  +++ +++.+|.+|+|||.+|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~  145 (458)
T PRK06912         68 TLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPT  145 (458)
T ss_pred             cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCC
Confidence                    00 0111           11233455678999888776677776555  344 37999999999999986

>PRK14694 putative mercuric reductase; Provisional

Probab=98.33  E-value=5.3e-06  Score=77.93  Aligned_cols=94  Identities=27%  Similarity=0.381  Sum_probs=66.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------------------------C-
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------------------------S-   64 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------------------------~-   64 (283)
                      ..-.|+|||||+.|+.+|..|++.+              .+|++||++.+.                           + 
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g--------------~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~   70 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERG--------------ARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPF   70 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccc
Confidence            3458999999999999999999987              899999875420                           0 


Q ss_pred             --CC-------C-HHHHHHH------------HHHHHhC-CCEEEeCceEEEeCCe--EEEcCC--cEEEeeEEEEcCCC
Q 023375           65 --SF-------D-DRLRHYA------------TTQLSKS-GVRLVRGIVKDVDSQK--LILNDG--TEVPYGLLVWSTGV  117 (283)
Q Consensus        65 --~~-------~-~~~~~~~------------~~~l~~~-gV~v~~~~V~~v~~~~--v~~~~g--~~i~~d~vi~a~G~  117 (283)
                        .+       + .++.++.            ...+++. +|+++.++++.++.+.  |++.+|  +++.+|.+|+|||.
T Consensus        71 ~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs  150 (468)
T PRK14694         71 DDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA  150 (468)
T ss_pred             cCCcccCCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC
Confidence              00       0 0111111            1123333 8999998888888774  555666  37999999999999


Q ss_pred             CCc
Q 023375          118 GPS  120 (283)
Q Consensus       118 ~~~  120 (283)
                      +|.
T Consensus       151 ~p~  153 (468)
T PRK14694        151 RPA  153 (468)
T ss_pred             CCC
Confidence            986

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.33  E-value=2.1e-05  Score=73.21  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=83.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCC-CCC----------------------CCC--
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL----------------------SSF--   66 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~-~~l----------------------~~~--   66 (283)
                      ...+|+|||||++|+-+|..|.+.+              .. +.++|++ ++.                      |.+  
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~   72 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPF   72 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCcc
Confidence            3468999999999999999999987              33 7777765 321                      111  


Q ss_pred             --------CHHHHHHHHHHHHhCCCEEE--eC-ceEEE--eCC----eEEEcCCcE--EEeeEEEEcCCCCCchhhhcc-
Q 023375           67 --------DDRLRHYATTQLSKSGVRLV--RG-IVKDV--DSQ----KLILNDGTE--VPYGLLVWSTGVGPSTLVKSL-  126 (283)
Q Consensus        67 --------~~~~~~~~~~~l~~~gV~v~--~~-~V~~v--~~~----~v~~~~g~~--i~~d~vi~a~G~~~~~~~~~~-  126 (283)
                              ..++.+++...++++++...  .+ .|+.+  +.+    .|+++++.+  +.+|.||+|||.-..+.+... 
T Consensus        73 ~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~  152 (443)
T COG2072          73 RWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA  152 (443)
T ss_pred             CCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC
Confidence                    12378899999999987654  33 44444  333    477777755  559999999999655544443 


Q ss_pred             CCCCCCCCccccC----CCcccCCCCCEEEeccccc
Q 023375          127 DLPKSPGGRIGID----EWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus       127 ~l~~~~~g~i~Vd----~~l~~~~~~~VfaiGD~a~  158 (283)
                      |.+ +..|.+.-.    +.... ...+|-+||-.++
T Consensus       153 G~~-~f~g~~~HS~~~~~~~~~-~GKrV~VIG~GaS  186 (443)
T COG2072         153 GLD-EFKGRILHSADWPNPEDL-RGKRVLVIGAGAS  186 (443)
T ss_pred             Ccc-CCCceEEchhcCCCcccc-CCCeEEEECCCcc
Confidence            222 233443332    12222 4578899986653

>PRK06834 hypothetical protein; Provisional

Probab=98.32  E-value=9.1e-06  Score=76.68  Aligned_cols=100  Identities=25%  Similarity=0.381  Sum_probs=69.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC---CC--------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI---LS--------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~---l~--------------------------   64 (283)
                      ..|+|||||++|+-+|.+|++.+              .+|+++|+. ..   .+                          
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G--------------~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~   69 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAG--------------VDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQG   69 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcC
Confidence            57999999999999999999876              555555543 10   00                          


Q ss_pred             ---------------------------CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEE
Q 023375           65 ---------------------------SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLV  112 (283)
Q Consensus        65 ---------------------------~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi  112 (283)
                                                 .....+.+.+.+.+++.||+++.+ +|++++.+    .+++.+|+++.+|.||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vV  149 (488)
T PRK06834         70 QVAQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLV  149 (488)
T ss_pred             CccccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence                                       001234445556667789999999 88888643    3555678889999999


Q ss_pred             EcCCCCCchhhhccCCC
Q 023375          113 WSTGVGPSTLVKSLDLP  129 (283)
Q Consensus       113 ~a~G~~~~~~~~~~~l~  129 (283)
                      .|.|..+. .-+.++++
T Consensus       150 gADG~~S~-vR~~lgi~  165 (488)
T PRK06834        150 GCDGGRSL-VRKAAGID  165 (488)
T ss_pred             EecCCCCC-cHhhcCCC
Confidence            99999774 33334443

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.31  E-value=1.1e-05  Score=73.94  Aligned_cols=60  Identities=25%  Similarity=0.327  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP  129 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~  129 (283)
                      .+.+.+.+.+++.|++++.+ +|++++.+    .+++++|+++.+|.||.|.|..+. +-+.++++
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~-vr~~~g~~  178 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST-LRELAGLP  178 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch-HHHhhcCC
Confidence            34455566677789999998 88888643    356678889999999999999874 33334443

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.31  E-value=7e-06  Score=71.64  Aligned_cols=91  Identities=24%  Similarity=0.343  Sum_probs=67.3

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC-C------------------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-S------------------------------   64 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l-~------------------------------   64 (283)
                      +|+|||||++|+.+|.+|++.+              .+|+++|+.... .                              
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   67 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR   67 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence            5899999999999999999876              788888875210 0                              


Q ss_pred             --------------------CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe--EEEcC-CcEEEeeEEEEcCCCC
Q 023375           65 --------------------SFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILND-GTEVPYGLLVWSTGVG  118 (283)
Q Consensus        65 --------------------~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~--v~~~~-g~~i~~d~vi~a~G~~  118 (283)
                                          --..++.+.+.+.+.+.|++++.+ +++++.  ++.  +.+.+ ++++.+|.||.|+|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~  147 (295)
T TIGR02032        68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR  147 (295)
T ss_pred             EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence                                001345566777778889999988 788764  343  33343 4679999999999986


Q ss_pred             Cc
Q 023375          119 PS  120 (283)
Q Consensus       119 ~~  120 (283)
                      ..
T Consensus       148 s~  149 (295)
T TIGR02032       148 SI  149 (295)
T ss_pred             hH
Confidence            53

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.31  E-value=1.8e-06  Score=81.40  Aligned_cols=87  Identities=22%  Similarity=0.300  Sum_probs=65.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG   82 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~g   82 (283)
                      ..++|+|||||++|+++|..|++.+              .+|+++++. .+.       |  .+++++.....+.+++.|
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G  207 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEG  207 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCC
Confidence            4579999999999999999999876              899999986 331       3  245667777778889999


Q ss_pred             CEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375           83 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        83 V~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      |+++++ .+. .   .+.. +.....+|.|++|+|..
T Consensus       208 v~~~~~~~v~-~---~~~~-~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       208 IDFVTNTEIG-V---DISA-DELKEQFDAVVLAGGAT  239 (485)
T ss_pred             CEEECCCEeC-C---ccCH-HHHHhhCCEEEEccCCC
Confidence            999998 553 1   1111 11235799999999997

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.28  E-value=8.1e-06  Score=76.45  Aligned_cols=91  Identities=22%  Similarity=0.370  Sum_probs=64.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC---------------------------CC-
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------SF-   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~---------------------------~~-   66 (283)
                      -.|+|||||+.|+.+|..|++.+              .+|.+||++.+..                           .+ 
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~g   69 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLG--------------KKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFG   69 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999887              8999999743210                           00 


Q ss_pred             --------C-HHHHHHH------------HHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCC-Cc
Q 023375           67 --------D-DRLRHYA------------TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS  120 (283)
Q Consensus        67 --------~-~~~~~~~------------~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~-~~  120 (283)
                              + .++.++.            ...++..+|+++.+....++...+.+ +++++.+|.+|+|||.+ |+
T Consensus        70 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~  144 (460)
T PRK06292         70 IHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPP  144 (460)
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCC
Confidence                    0 1111111            22245567888877666666777766 67789999999999998 54

>PLN02697 lycopene epsilon cyclase

Probab=98.26  E-value=1.1e-05  Score=76.53  Aligned_cols=94  Identities=22%  Similarity=0.374  Sum_probs=66.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC--------------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS--------------------------   65 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~--------------------------   65 (283)
                      ....|+|||||++|+.+|..|++.+              .+|.+|++. ...+.                          
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v  172 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIV  172 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEE
Confidence            3468999999999999999999876              667777653 21100                          


Q ss_pred             ----------------C-CHHHHHHHHHHHHhCCCEEEeCceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCCc
Q 023375           66 ----------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        66 ----------------~-~~~~~~~~~~~l~~~gV~v~~~~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                      + ...+.+.+.+.+.+.|++++..+|+++..  +.   +++.+|+++.++.||.|+|..+.
T Consensus       173 ~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~  249 (529)
T PLN02697        173 YLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG  249 (529)
T ss_pred             EecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence                            0 11233455555677899985558888863  33   34567889999999999998763

>PLN02661 Putative thiazole synthesis

Probab=98.26  E-value=3.9e-05  Score=68.66  Aligned_cols=160  Identities=18%  Similarity=0.174  Sum_probs=94.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------C-----------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------S-----------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------~-----------------   65 (283)
                      ...|+|||||++|+-+|.+|++..             +.+|++||++ ....          .                 
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~-------------g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~  158 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNP-------------NVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP  158 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcC-------------CCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC
Confidence            358999999999999999998641             1788888875 2210          0                 


Q ss_pred             CC-----------HHH-HHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEE------cC--C------cEEEeeEEEE
Q 023375           66 FD-----------DRL-RHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLIL------ND--G------TEVPYGLLVW  113 (283)
Q Consensus        66 ~~-----------~~~-~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~------~~--g------~~i~~d~vi~  113 (283)
                      ++           ... ...+.+.+++.||+++.+ .+.++..  +   ++.+      .+  +      ..+.++.||+
T Consensus       159 fd~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVl  238 (357)
T PLN02661        159 YDEQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVS  238 (357)
T ss_pred             cccCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEE
Confidence            00           011 112223344578999888 6776532  2   3332      11  1      2689999999


Q ss_pred             cCCCCCc---hhhhc---cCC----------CCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHH-
Q 023375          114 STGVGPS---TLVKS---LDL----------PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE-  176 (283)
Q Consensus       114 a~G~~~~---~~~~~---~~l----------~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~-  176 (283)
                      |||..+.   .....   +++          ..+..-...|+.+-++  +|++|+.|=.++-.+  | .|+..-..-++ 
T Consensus       239 ATGh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~--g-~~rmgp~fg~m~  313 (357)
T PLN02661        239 SCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEID--G-SPRMGPTFGAMM  313 (357)
T ss_pred             cCCCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhc--C-CCccCchhHhHH
Confidence            9997653   11111   111          1111112445555555  899999997665221  2 22222223343 


Q ss_pred             HHHHHHHHHHHHHhh
Q 023375          177 RQGKYLFSLLNRIGK  191 (283)
Q Consensus       177 ~qg~~~a~~i~~~~~  191 (283)
                      ..|+.+|+.|...++
T Consensus       314 ~sg~k~a~~~~~~l~  328 (357)
T PLN02661        314 ISGQKAAHLALKALG  328 (357)
T ss_pred             hhhHHHHHHHHHHHc
Confidence            679999999888775

>PTZ00058 glutathione reductase; Provisional

Probab=98.23  E-value=1.4e-05  Score=76.39  Aligned_cols=92  Identities=22%  Similarity=0.347  Sum_probs=63.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC---------------------------C--
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------S--   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~---------------------------~--   65 (283)
                      -.|+|||||+.|..+|..+++.+              .+|.+||++.+..                           .  
T Consensus        49 yDvvVIG~G~aG~~aA~~aa~~G--------------~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~G  114 (561)
T PTZ00058         49 YDLIVIGGGSGGMAAARRAARNK--------------AKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYG  114 (561)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcC--------------CeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcC
Confidence            47999999999999999999987              8999998643210                           0  


Q ss_pred             ------CC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeE--------------------E--------
Q 023375           66 ------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKL--------------------I--------   99 (283)
Q Consensus        66 ------~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v--------------------~--------   99 (283)
                            ++            ..+.+...+.+++.||+++.+.-.=++++.|                    +        
T Consensus       115 i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~  194 (561)
T PTZ00058        115 FDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQ  194 (561)
T ss_pred             CCccCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeecccee
Confidence                  00            0112334455677899999873211122222                    2        


Q ss_pred             EcCCcEEEeeEEEEcCCCCCc
Q 023375          100 LNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       100 ~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .++|+++.+|.+|+|||.+|.
T Consensus       195 ~~~g~~i~ad~lVIATGS~P~  215 (561)
T PTZ00058        195 LDDGQVIEGKNILIAVGNKPI  215 (561)
T ss_pred             cCCCcEEECCEEEEecCCCCC
Confidence            246778999999999999986

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.22  E-value=3.4e-06  Score=79.28  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+|||||++|+.+|..|++.+              .+|+++++. .+.       |  .++.++.....+.+.+.
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~  206 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE  206 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence            34579999999999999999999876              899999986 331       2  23556666677788999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ||+++++ .+. .+   +.. +.....+|.||+|+|..+
T Consensus       207 gv~~~~~~~v~-~~---~~~-~~~~~~~d~vvlAtGa~~  240 (471)
T PRK12810        207 GIEFRTNVEVG-KD---ITA-EELLAEYDAVFLGTGAYK  240 (471)
T ss_pred             CcEEEeCCEEC-Cc---CCH-HHHHhhCCEEEEecCCCC
Confidence            9999998 442 11   111 111357999999999973

>PLN02507 glutathione reductase

Probab=98.21  E-value=1.6e-05  Score=75.30  Aligned_cols=92  Identities=23%  Similarity=0.294  Sum_probs=66.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC----------CCCCC------CCCHH---------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----------NEILS------SFDDR---------   69 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~----------~~~l~------~~~~~---------   69 (283)
                      -.++||||||.|..+|..+++++              .+|.|||+          +.+..      -+|.+         
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G--------------~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~   91 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFG--------------AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFG   91 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHH
Confidence            36999999999999999999988              89999994          11110      00100         


Q ss_pred             ----------------------------------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCCc--EEEeeEE
Q 023375           70 ----------------------------------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLL  111 (283)
Q Consensus        70 ----------------------------------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~d~v  111 (283)
                                                        +....++.+.+.||+++.+++..++++.+..  .+|+  ++.+|.|
T Consensus        92 ~~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~L  171 (499)
T PLN02507         92 GEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHI  171 (499)
T ss_pred             HHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEE
Confidence                                              1111223455679999999888888875544  5665  5889999


Q ss_pred             EEcCCCCCc
Q 023375          112 VWSTGVGPS  120 (283)
Q Consensus       112 i~a~G~~~~  120 (283)
                      |+|||.+|.
T Consensus       172 IIATGs~p~  180 (499)
T PLN02507        172 LIATGSRAQ  180 (499)
T ss_pred             EEecCCCCC
Confidence            999999986

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.21  E-value=1.8e-05  Score=72.42  Aligned_cols=48  Identities=13%  Similarity=0.095  Sum_probs=35.8

Q ss_pred             HHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           73 YATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        73 ~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+.+. +|+++.+ ++++++.+    .+++.+|+++.+|.||.|.|..+.
T Consensus       114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence            344444455 4999988 88888643    356678889999999999998765

>PRK07588 hypothetical protein; Provisional

Probab=98.21  E-value=1.8e-05  Score=72.47  Aligned_cols=40  Identities=15%  Similarity=0.358  Sum_probs=32.7

Q ss_pred             CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+++++.+ +|++++.+    .|++++|+++.+|.||-|.|....
T Consensus       115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            47999999 89888643    366789999999999999998664

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.20  E-value=4.1e-06  Score=81.73  Aligned_cols=90  Identities=16%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKSG   82 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~g   82 (283)
                      ..++|+|||||++|+.+|..|+..+              .+|+++++. .+       .|  .++..+.+...+.+.+.|
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~G  257 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMG  257 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcC
Confidence            4579999999999999999999877              899999986 43       12  246667777778889999


Q ss_pred             CEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           83 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        83 V~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |+++++....+   .+.+++. ...+|.||+|+|..+.
T Consensus       258 v~i~~~~~v~~---dv~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        258 AEFRFNTVFGR---DITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             CEEEeCCcccC---ccCHHHH-HhhcCEEEEEcCCCCC
Confidence            99998843221   1222221 2359999999998754

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.20  E-value=4.5e-06  Score=81.34  Aligned_cols=89  Identities=17%  Similarity=0.279  Sum_probs=67.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG   82 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~g   82 (283)
                      ..++|+|||||++|+.+|..|+..+              .+|+++++. .+.       |  .++....+...+.+++.|
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G  374 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG  374 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence            4689999999999999999999887              899999987 321       2  256677777778899999


Q ss_pred             CEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           83 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        83 V~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |+++++ .+..    .+.+++ ....+|.|++|+|..+.
T Consensus       375 v~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        375 IDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             eEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence            999998 5521    122222 23469999999998654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.20  E-value=1.3e-05  Score=76.08  Aligned_cols=130  Identities=21%  Similarity=0.280  Sum_probs=81.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------------------------   64 (283)
                      .|+|+|||||++|+..|..|.+.+              .+++++|+. .+..                            
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~   66 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMM   66 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHh
Confidence            379999999999999999999877              899999885 4310                            


Q ss_pred             ---CC-----------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEeC--C-------eEEEcC-Cc--EEEeeEEEEcC
Q 023375           65 ---SF-----------DDRLRHYATTQLSKSGV--RLVRG-IVKDVDS--Q-------KLILND-GT--EVPYGLLVWST  115 (283)
Q Consensus        65 ---~~-----------~~~~~~~~~~~l~~~gV--~v~~~-~V~~v~~--~-------~v~~~~-g~--~i~~d~vi~a~  115 (283)
                         .+           ..++.+|++.+.+..++  .+.++ +|.+|+.  +       .|++++ |+  +..+|.||+|+
T Consensus        67 ~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvvat  146 (531)
T PF00743_consen   67 AFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVAT  146 (531)
T ss_dssp             CCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE
T ss_pred             cCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcC
Confidence               01           15788899998888887  36778 7888753  1       366643 42  45699999999


Q ss_pred             CCCCchhhhc---cCCCCCCCCccccCCCcccC---CCCCEEEeccccc
Q 023375          116 GVGPSTLVKS---LDLPKSPGGRIGIDEWLRVP---SVQDVFAVGDCSG  158 (283)
Q Consensus       116 G~~~~~~~~~---~~l~~~~~g~i~Vd~~l~~~---~~~~VfaiGD~a~  158 (283)
                      |.-..+.+..   .|++ +-+|.+.-....+.+   ...+|.++|-..+
T Consensus       147 G~~~~P~~P~~~~~G~e-~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S  194 (531)
T PF00743_consen  147 GHFSKPNIPEPSFPGLE-KFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS  194 (531)
T ss_dssp             -SSSCESB-----CTGG-GHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred             CCcCCCCCChhhhhhhh-cCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence            9865443221   1332 124555544433321   3567999997654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.19  E-value=2.1e-05  Score=72.12  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCC
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP  129 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~  129 (283)
                      ..+.+.+.+.+.+.|++++.+ +|++++.+    .+++++|+++.+|.||.|.|..+. +.+.++++
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~  176 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIK  176 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCC
Confidence            345566667777889999998 89888643    366678889999999999998765 33334443

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.19  E-value=1.9e-05  Score=72.23  Aligned_cols=90  Identities=26%  Similarity=0.414  Sum_probs=64.7

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------------------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------------   64 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------------------------------   64 (283)
                      .|+|||||++|+.+|..|++.+              .+|+|||+. .+..                              
T Consensus         1 DviIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEY   66 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEE
Confidence            4899999999999999998765              677777754 2110                              


Q ss_pred             --------------CC-CHHHHHHHHHHHHhCCCEEEeCceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCC
Q 023375           65 --------------SF-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        65 --------------~~-~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                                    .+ ...+.+.+.+.+.+.|++++.++|..++.+     .|++++|+++.++.||.|+|..+
T Consensus        67 ~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        67 RFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence                          00 123345555666777999876677777543     35667888999999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.19  E-value=1.4e-05  Score=75.00  Aligned_cols=92  Identities=21%  Similarity=0.368  Sum_probs=61.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC------CCHHH-----------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRL-----------------   70 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~------~~~~~-----------------   70 (283)
                      -.|+||||||.|+++|..+++.+              .+|+|||+. .+...      +|.+.                 
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G--------------~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~   69 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLG--------------LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFA   69 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhh
Confidence            47999999999999999999987              899999963 32110      11110                 


Q ss_pred             --------------------------HHHHHHHHHhCCCEEEeCceEEEe-CCeEE--EcCCc--EEEeeEEEEcCCCCC
Q 023375           71 --------------------------RHYATTQLSKSGVRLVRGIVKDVD-SQKLI--LNDGT--EVPYGLLVWSTGVGP  119 (283)
Q Consensus        71 --------------------------~~~~~~~l~~~gV~v~~~~V~~v~-~~~v~--~~~g~--~i~~d~vi~a~G~~~  119 (283)
                                                .......+++.+|+++.+.. ++. ++.+.  ..+|+  ++.||.+|+|||.+|
T Consensus        70 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p  148 (466)
T PRK06115         70 HLGIEVKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEP  148 (466)
T ss_pred             hcCccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCC
Confidence                                      01112234455788777642 333 33443  34564  699999999999998


Q ss_pred             ch
Q 023375          120 ST  121 (283)
Q Consensus       120 ~~  121 (283)
                      .+
T Consensus       149 ~~  150 (466)
T PRK06115        149 TP  150 (466)
T ss_pred             CC
Confidence            63

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.19  E-value=4.9e-06  Score=81.33  Aligned_cols=90  Identities=20%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+|||||++|+.+|..|++.+              .+|+++|+. .+.       |  .++.++.....+.+++.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~  390 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM  390 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence            35689999999999999999999887              899999986 321       2  24566767677888999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ||+++.+ .|.    ..+.+++ ....+|.|++++|....
T Consensus       391 Gv~~~~~~~v~----~~i~~~~-~~~~~DavilAtGa~~~  425 (654)
T PRK12769        391 GIEFELNCEVG----KDISLES-LLEDYDAVFVGVGTYRS  425 (654)
T ss_pred             CeEEECCCEeC----CcCCHHH-HHhcCCEEEEeCCCCCC
Confidence            9999988 442    1111111 12369999999998643

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.18  E-value=8.7e-05  Score=66.66  Aligned_cols=156  Identities=20%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC--------------------CCH---
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS--------------------FDD---   68 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~--------------------~~~---   68 (283)
                      +...|.|||||.+|.|+-..|......          ...++..|.++ .++|.                    +++   
T Consensus       186 ~~~~V~ViG~GQSAAEi~~~Ll~~~~~----------~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r  255 (436)
T COG3486         186 QKRSVTVIGSGQSAAEIFLDLLNSQPP----------QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEAR  255 (436)
T ss_pred             cCceEEEEcCCccHHHHHHHHHhCCCC----------cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHH
Confidence            444599999999999999888754311          12467778775 44431                    112   


Q ss_pred             ----------------HHHHHHHHHHH-------hCCCEEEeC-ceEEEeCCe---EEEc-------CCcEEEeeEEEEc
Q 023375           69 ----------------RLRHYATTQLS-------KSGVRLVRG-IVKDVDSQK---LILN-------DGTEVPYGLLVWS  114 (283)
Q Consensus        69 ----------------~~~~~~~~~l~-------~~gV~v~~~-~V~~v~~~~---v~~~-------~g~~i~~d~vi~a  114 (283)
                                      ++...+.+.|-       +.+|.++.+ .|.+++..+   +.+.       +.+++++|.||+|
T Consensus       256 ~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlA  335 (436)
T COG3486         256 DELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILA  335 (436)
T ss_pred             HHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEe
Confidence                            22222222221       335777777 788887653   4331       2357899999999


Q ss_pred             CCCCCc--hhhhccC--CCCCCCCccccCCCcccCCCC----CEEEeccccccCcCCCCcCCCcchHHHHHHHHHH
Q 023375          115 TGVGPS--TLVKSLD--LPKSPGGRIGIDEWLRVPSVQ----DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL  182 (283)
Q Consensus       115 ~G~~~~--~~~~~~~--l~~~~~g~i~Vd~~l~~~~~~----~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~  182 (283)
                      ||.+..  ++++.+.  +..+.+|+..|+.+.++...+    .||+-|-+.+.    .+-.-|...-.|.+.+.++
T Consensus       336 TGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht----HGig~pdLsl~a~Raa~I~  407 (436)
T COG3486         336 TGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT----HGIGAPDLSLGAWRAAVIL  407 (436)
T ss_pred             cccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc----cccCCccchHHHHHHHHHH
Confidence            999854  3665553  556888999999887764322    69998877653    1222355665565555443

>PRK13748 putative mercuric reductase; Provisional

Probab=98.16  E-value=1.9e-05  Score=75.78  Aligned_cols=92  Identities=29%  Similarity=0.398  Sum_probs=65.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------C---------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S---------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~---------------------   64 (283)
                      ..|+|||||+.|+.+|..+++.+              .+|.|||++.+.         |                     
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G--------------~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~  164 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQG--------------ARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDG  164 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccC
Confidence            58999999999999999999987              899999975320         0                     


Q ss_pred             CC-------C-HHHHHH------------HHHHHHhC-CCEEEeCceEEEeCCeEEE--cCCc--EEEeeEEEEcCCCCC
Q 023375           65 SF-------D-DRLRHY------------ATTQLSKS-GVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVWSTGVGP  119 (283)
Q Consensus        65 ~~-------~-~~~~~~------------~~~~l~~~-gV~v~~~~V~~v~~~~v~~--~~g~--~i~~d~vi~a~G~~~  119 (283)
                      .+       + ..+.++            ....+.+. +|+++.++++.++++.+.+  .+|+  ++.+|.+|+|||.+|
T Consensus       165 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p  244 (561)
T PRK13748        165 GIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASP  244 (561)
T ss_pred             CccCCCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence            01       0 111111            11223444 8999988777777775544  4553  699999999999998


Q ss_pred             c
Q 023375          120 S  120 (283)
Q Consensus       120 ~  120 (283)
                      .
T Consensus       245 ~  245 (561)
T PRK13748        245 A  245 (561)
T ss_pred             C
Confidence            6

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.14  E-value=2.6e-05  Score=71.48  Aligned_cols=93  Identities=28%  Similarity=0.413  Sum_probs=70.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCC----------------C---------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSS----------------F---------   66 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~----------------~---------   66 (283)
                      ..+|+|||||++|+-+|..|++.+              .+|+|||+.  ++.+.                +         
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~   67 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEAL   67 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhc
Confidence            368999999999999999999987              777887774  22110                0         


Q ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEc-CCc
Q 023375           67 -----------------------------------DDRLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILN-DGT  104 (283)
Q Consensus        67 -----------------------------------~~~~~~~~~~~l~~~g-V~v~~~-~V~~v~~~----~v~~~-~g~  104 (283)
                                                         ...+.+.+.+.+.+.+ |+++.+ +|+.++.+    .++++ +|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~  147 (387)
T COG0654          68 GVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGE  147 (387)
T ss_pred             cCCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCc
Confidence                                               1245566666676665 999998 89888754    37777 999


Q ss_pred             EEEeeEEEEcCCCCCc
Q 023375          105 EVPYGLLVWSTGVGPS  120 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~~  120 (283)
                      ++.+|+||-|=|....
T Consensus       148 ~~~a~llVgADG~~S~  163 (387)
T COG0654         148 TLDADLLVGADGANSA  163 (387)
T ss_pred             EEecCEEEECCCCchH
Confidence            9999999999997554

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.14  E-value=2.3e-05  Score=74.89  Aligned_cols=90  Identities=24%  Similarity=0.351  Sum_probs=63.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC------CC---------------C------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------SS---------------F------   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------~~---------------~------   66 (283)
                      -.|+|||||++|+++|..+++.+              .+|.|+++. +.+      |.               +      
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~   70 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGK   70 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHH
Confidence            47999999999999999999887              788888765 111      00               0      


Q ss_pred             ---------------------------C-HHHHHHHHHHHHhC-CCEEEeCceEEEe--CC---eEEEcCCcEEEeeEEE
Q 023375           67 ---------------------------D-DRLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLV  112 (283)
Q Consensus        67 ---------------------------~-~~~~~~~~~~l~~~-gV~v~~~~V~~v~--~~---~v~~~~g~~i~~d~vi  112 (283)
                                                 + ......+.+.+.+. |++++.+.|.++.  ++   +|.+.+|.++.++.||
T Consensus        71 ~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VI  150 (618)
T PRK05192         71 AIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVV  150 (618)
T ss_pred             HHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEE
Confidence                                       0 01123333444444 7898766777763  33   4778889999999999


Q ss_pred             EcCCCC
Q 023375          113 WSTGVG  118 (283)
Q Consensus       113 ~a~G~~  118 (283)
                      .|+|..
T Consensus       151 lATGTF  156 (618)
T PRK05192        151 LTTGTF  156 (618)
T ss_pred             EeeCcc
Confidence            999954

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.14  E-value=1.3e-05  Score=73.15  Aligned_cols=134  Identities=24%  Similarity=0.377  Sum_probs=93.7

Q ss_pred             HHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeC---Ce--EEEcC---C--cEEEee
Q 023375           41 VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS---QK--LILND---G--TEVPYG  109 (283)
Q Consensus        41 ~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~---~~--v~~~~---g--~~i~~d  109 (283)
                      ++.+||+    .+|+++-.. +....+   .-++..+.-++.||+++.+++.+|.+   +.  |..+|   |  .++++|
T Consensus       394 Ike~~Pd----~~v~I~YmDiRafG~~---yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~D  466 (622)
T COG1148         394 IKERYPD----TDVTIYYMDIRAFGKD---YEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEAD  466 (622)
T ss_pred             hhhcCCC----cceeEEEEEeeccCcc---HHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccc
Confidence            3566776    888888665 433322   23334444457899999997666643   23  33333   2  478999


Q ss_pred             EEEEcCCCCCch----hhhccCCCCCCCCccccC-CCccc--CCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHH
Q 023375          110 LLVWSTGVGPST----LVKSLDLPKSPGGRIGID-EWLRV--PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL  182 (283)
Q Consensus       110 ~vi~a~G~~~~~----~~~~~~l~~~~~g~i~Vd-~~l~~--~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~  182 (283)
                      +|++++|..|.+    +...++++.+++|++.-. +.++.  ...++||.+|=|..          |+..+.++.||..+
T Consensus       467 LVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg----------PkdI~~siaqa~aA  536 (622)
T COG1148         467 LVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG----------PKDIADSIAQAKAA  536 (622)
T ss_pred             eEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC----------CccHHHHHHHhHHH
Confidence            999999999863    455679999999987776 44442  15789999997663          88999999999988


Q ss_pred             HHHHHHHhh
Q 023375          183 FSLLNRIGK  191 (283)
Q Consensus       183 a~~i~~~~~  191 (283)
                      |......+.
T Consensus       537 A~kA~~~l~  545 (622)
T COG1148         537 AAKAAQLLG  545 (622)
T ss_pred             HHHHHHHhh
Confidence            877666554

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.14  E-value=3.3e-05  Score=70.49  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHhCC-CEEEeC-ceEEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~g-V~v~~~-~V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+++.| ++++ + +++++..  +  .|++++|+++.+|.||.|.|....
T Consensus       113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~  168 (388)
T PRK07608        113 IERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW  168 (388)
T ss_pred             HHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence            3445556667777 9998 6 7888753  3  356678888999999999998764

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.12  E-value=2.9e-05  Score=71.40  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=37.6

Q ss_pred             HHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           72 HYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+++.|++++.+ ++++++.+    .|++++|+++.+|.||.|.|....
T Consensus       116 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             HHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            34445566778999988 88888543    366778889999999999998664

>PRK08244 hypothetical protein; Provisional

Probab=98.11  E-value=3.4e-05  Score=72.90  Aligned_cols=92  Identities=24%  Similarity=0.428  Sum_probs=65.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-----------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-----------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-----------------------------   64 (283)
                      ..|+||||||+|+.+|..|++.+              .+|+|||+. ...+                             
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G--------------~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~   68 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAG--------------VKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGR   68 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcc
Confidence            47999999999999999999876              566666643 1100                             


Q ss_pred             ---------------------C------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEc--CC-cEEEe
Q 023375           65 ---------------------S------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN--DG-TEVPY  108 (283)
Q Consensus        65 ---------------------~------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~--~g-~~i~~  108 (283)
                                           .      + ...+.+.+.+.+++.|++++.+ ++++++.  +.  +++.  +| +++.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a  148 (493)
T PRK08244         69 KLPSGHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTS  148 (493)
T ss_pred             cccceEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEe
Confidence                                 0      0 0234455566667789999999 8888753  33  3443  45 47999


Q ss_pred             eEEEEcCCCCCc
Q 023375          109 GLLVWSTGVGPS  120 (283)
Q Consensus       109 d~vi~a~G~~~~  120 (283)
                      |.||-|.|..+.
T Consensus       149 ~~vVgADG~~S~  160 (493)
T PRK08244        149 SYVVGADGAGSI  160 (493)
T ss_pred             CEEEECCCCChH
Confidence            999999998764

>PRK05868 hypothetical protein; Validated

Probab=98.10  E-value=4.1e-05  Score=69.76  Aligned_cols=41  Identities=7%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             hCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..|++++.+ +|++++.+    .|++++|+++.+|.||-|-|....
T Consensus       116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~  161 (372)
T PRK05868        116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN  161 (372)
T ss_pred             cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence            358999988 78888643    366789999999999999998765

>PRK07846 mycothione reductase; Reviewed

Probab=98.10  E-value=2.5e-05  Score=73.08  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=36.3

Q ss_pred             HHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           78 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        78 l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +++.||+++.++..-++++.|++.+|+++.+|.+|+|||.+|.
T Consensus        99 ~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~  141 (451)
T PRK07846         99 RDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPV  141 (451)
T ss_pred             hhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCC
Confidence            5567899988865556778899988889999999999999986

>PRK06184 hypothetical protein; Provisional

Probab=98.10  E-value=4.3e-05  Score=72.45  Aligned_cols=51  Identities=16%  Similarity=0.112  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEE---cCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LIL---NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~---~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+.|++++.+ ++++++.+  .  +++   .+++++.+|.||-|.|....
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~  169 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF  169 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence            3445666677789999999 89888643  3  444   45678999999999998764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.09  E-value=8.6e-06  Score=75.78  Aligned_cols=89  Identities=12%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHH-hhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CCCC--HHHHHHHHHHHHh
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SSFD--DRLRHYATTQLSK   80 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~-~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~~~--~~~~~~~~~~l~~   80 (283)
                      +.++|+||||||+|+++|..|.. .+              ++|+++|+. .+.        |.-+  ..+...+.+.+..
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g--------------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~  103 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHER--------------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLS  103 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcC--------------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhh
Confidence            56899999999999999998764 33              899999986 332        1111  2344555555666


Q ss_pred             CCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+++++.+ .|..    .++.++= .-.+|.||+|+|..+.
T Consensus       104 ~~v~f~gnv~VG~----Dvt~eeL-~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        104 PNYRFFGNVHVGV----DLKMEEL-RNHYNCVIFCCGASEV  139 (506)
T ss_pred             CCeEEEeeeEecC----ccCHHHH-HhcCCEEEEEcCCCCC
Confidence            78888865 4421    1222111 1269999999998864

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.09  E-value=2.5e-05  Score=79.63  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=66.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------CC-CHHHHHHHHHHHHh
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------SF-DDRLRHYATTQLSK   80 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------~~-~~~~~~~~~~~l~~   80 (283)
                      ...+|+||||||+|+.+|.++++.+              .+|+|+|.. .+..          .. ..+......+.+.+
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G--------------~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~  227 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAG--------------ARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTA  227 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhc
Confidence            4578999999999999999999876              899999975 3321          11 12333445566666


Q ss_pred             C-CCEEEeC-ceEEEeCCe-EEE----c-------CC------cEEEeeEEEEcCCCCCch
Q 023375           81 S-GVRLVRG-IVKDVDSQK-LIL----N-------DG------TEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        81 ~-gV~v~~~-~V~~v~~~~-v~~----~-------~g------~~i~~d~vi~a~G~~~~~  121 (283)
                      . +|+++.+ +|..+..+. +..    .       ++      .++.+|.||+|||..+.+
T Consensus       228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            6 5999988 787775532 110    0       11      168999999999998763

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.08  E-value=5.6e-05  Score=69.31  Aligned_cols=53  Identities=21%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             HHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCC
Q 023375           75 TTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL  128 (283)
Q Consensus        75 ~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l  128 (283)
                      .+.+++.|++++.+ +|.+++.+    .|.+.++ ++.+|.||.|+|.....+.+.+++
T Consensus       156 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~  213 (393)
T PRK11728        156 AELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGL  213 (393)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCC
Confidence            34445678999988 78887532    2455555 799999999999987666655554

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.08  E-value=3.8e-05  Score=72.29  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC-------CCCCC------CCCHH------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-------NEILS------SFDDR------------   69 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~-------~~~l~------~~~~~------------   69 (283)
                      ..++|||||+.|+.+|..+++.+              .+|.+||+       ..+-.      .+|.+            
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g--------------~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~   70 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLG--------------LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENA   70 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHH
Confidence            47999999999999999999987              89999997       12110      00100            


Q ss_pred             -------------------------------HHHHHHHHHHhCCCEEEeCceEEEe----CCeEEEc--CCcEEEeeEEE
Q 023375           70 -------------------------------LRHYATTQLSKSGVRLVRGIVKDVD----SQKLILN--DGTEVPYGLLV  112 (283)
Q Consensus        70 -------------------------------~~~~~~~~l~~~gV~v~~~~V~~v~----~~~v~~~--~g~~i~~d~vi  112 (283)
                                                     +.+...+.++..+|+++.+++..++    +..|.+.  +++++.+|.+|
T Consensus        71 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lV  150 (475)
T PRK06327         71 GHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVI  150 (475)
T ss_pred             HhhHHhcCccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEE
Confidence                                           0111223345568888887665555    4456664  34689999999


Q ss_pred             EcCCCCCc
Q 023375          113 WSTGVGPS  120 (283)
Q Consensus       113 ~a~G~~~~  120 (283)
                      +|||.+|.
T Consensus       151 iATGs~p~  158 (475)
T PRK06327        151 IATGSEPR  158 (475)
T ss_pred             EeCCCCCC
Confidence            99999986

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.06  E-value=2.1e-05  Score=73.80  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      .+|+||||||.|+.+|..+++.+              .+|+|||++.
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G--------------~~V~lie~~~   37 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLG--------------LKTAVVEKKY   37 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCC
Confidence            57999999999999999999887              8999999753

>PRK06753 hypothetical protein; Provisional

Probab=98.06  E-value=3.9e-05  Score=69.71  Aligned_cols=39  Identities=15%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+++.+ +|++++.+    .|++++|+++.+|.||-|-|..+.
T Consensus       110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753        110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            4568888 78888643    366788999999999999997654

>PRK09126 hypothetical protein; Provisional

Probab=98.06  E-value=5.3e-05  Score=69.32  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=33.5

Q ss_pred             hCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..|++++.+ +|++++.+    .|++++|+++.+|.||.|.|..+.
T Consensus       123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA  168 (392)
T ss_pred             CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence            468999999 88888543    366778889999999999998765

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.05  E-value=9e-06  Score=80.94  Aligned_cols=35  Identities=29%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|+||||||+|+++|..|+..+              ++|+++|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence            46789999999999999999999877              999999974

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.05  E-value=4.4e-05  Score=68.16  Aligned_cols=91  Identities=23%  Similarity=0.373  Sum_probs=62.8

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-----------------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-----------------------------   65 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-----------------------------   65 (283)
                      +|+|||||++|+-+|..|++.+              .+|+|||+. ...+.                             
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G--------------~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~   68 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAG--------------IDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSP   68 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT--------------CEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEE
T ss_pred             eEEEECCCHHHHHHHHHHHhcc--------------cccccchhcccccccccccccccccccccccccchhhhhhhccc
Confidence            7999999999999999999987              777777764 22000                             


Q ss_pred             ---------------------------------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEE
Q 023375           66 ---------------------------------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LIL  100 (283)
Q Consensus        66 ---------------------------------------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~  100 (283)
                                                             + ...+.+.+.+.+++.|++++.+ ++++++.  ++  +.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~  148 (356)
T PF01494_consen   69 HEVMRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVV  148 (356)
T ss_dssp             ECEEEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEE
T ss_pred             ccceeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccccccccc
Confidence                                                   0 1345666777778889999999 7876643  33  233


Q ss_pred             c---CC--cEEEeeEEEEcCCCCCc
Q 023375          101 N---DG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       101 ~---~g--~~i~~d~vi~a~G~~~~  120 (283)
                      .   +|  +++.+|.||-|-|....
T Consensus       149 ~~~~~g~~~~i~adlvVgADG~~S~  173 (356)
T PF01494_consen  149 RDGEDGEEETIEADLVVGADGAHSK  173 (356)
T ss_dssp             EETCTCEEEEEEESEEEE-SGTT-H
T ss_pred             ccccCCceeEEEEeeeecccCcccc
Confidence            2   34  36899999999998775

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.04  E-value=7.4e-05  Score=67.95  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~g-V~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+.| ++++.+ +|++++.+    .+++++|+++.+|.||.|.|....
T Consensus       108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       108 LQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK  164 (385)
T ss_pred             HHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence            3444555566677 999988 88888643    356678889999999999998654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.04  E-value=4.6e-05  Score=72.17  Aligned_cols=92  Identities=23%  Similarity=0.328  Sum_probs=62.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC---------CCC------CCC------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---------ILS------SFD------------   67 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~---------~l~------~~~------------   67 (283)
                      -.|+||||||.|+.+|..+++.+              .+|+|||+.+         +-.      -.|            
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G--------------~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~   71 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHG--------------KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGS   71 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHH
Confidence            47999999999999999999987              8999999520         100      011            


Q ss_pred             -------------------HHHHHHHHHH-----------HHhCCCEEEeCceEEEeCCeEEEcC---CcEEEeeEEEEc
Q 023375           68 -------------------DRLRHYATTQ-----------LSKSGVRLVRGIVKDVDSQKLILND---GTEVPYGLLVWS  114 (283)
Q Consensus        68 -------------------~~~~~~~~~~-----------l~~~gV~v~~~~V~~v~~~~v~~~~---g~~i~~d~vi~a  114 (283)
                                         .++.++..+.           ++..+|+++.+...-.++..|.+.+   ++++.+|.||+|
T Consensus        72 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIA  151 (499)
T PTZ00052         72 IFHHDSQMYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIA  151 (499)
T ss_pred             HHHhHHhcCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEe
Confidence                               1122222222           2335777777654445556676643   357999999999


Q ss_pred             CCCCCc
Q 023375          115 TGVGPS  120 (283)
Q Consensus       115 ~G~~~~  120 (283)
                      ||.+|.
T Consensus       152 TGs~p~  157 (499)
T PTZ00052        152 TGGRPS  157 (499)
T ss_pred             cCCCCC
Confidence            999987

>PRK07190 hypothetical protein; Provisional

Probab=98.03  E-value=6e-05  Score=71.15  Aligned_cols=49  Identities=14%  Similarity=0.291  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCC
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ...+.+.+.+.|++++.+ +|++++.  ++  +++.+|+++.++.||.|.|...
T Consensus       112 e~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        112 EKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            344555667789999999 8988864  33  4556788899999999999855

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.03  E-value=2.2e-05  Score=74.00  Aligned_cols=76  Identities=24%  Similarity=0.265  Sum_probs=59.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      +.++|+|||+|.+|+++|..|++.+              .+|++++..+      ........+.|++.||+++++ .+.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc
Confidence            4568999999999999999998877              8999998653      122344566788899999987 442


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                  ....+|.||.++|..|+
T Consensus        75 ------------~~~~~D~Vv~s~Gi~~~   91 (480)
T PRK01438         75 ------------LPEDTDLVVTSPGWRPD   91 (480)
T ss_pred             ------------ccCCCCEEEECCCcCCC
Confidence                        12458999999999998

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.02  E-value=7.9e-05  Score=68.67  Aligned_cols=50  Identities=18%  Similarity=0.163  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcC-C--cEEEeeEEEEcCCCCCc
Q 023375           71 RHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILND-G--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        71 ~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~-g--~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+.+.+. +|+++.+ ++++++.+    .|++++ +  .++.+|.||.|.|....
T Consensus       124 ~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~  182 (415)
T PRK07364        124 LEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP  182 (415)
T ss_pred             HHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence            33444445454 7999988 88888543    255553 3  36999999999998764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.01  E-value=8.2e-05  Score=68.48  Aligned_cols=47  Identities=21%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             HHHHHHh-CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           74 ATTQLSK-SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        74 ~~~~l~~-~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+ .||+++.+ +|++++.+    .|++++|+++.+|.||-|.|....
T Consensus       117 L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~  169 (405)
T PRK08850        117 LLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW  169 (405)
T ss_pred             HHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence            3343444 37999988 88888543    467788999999999999997553

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=4.3e-05  Score=63.31  Aligned_cols=92  Identities=20%  Similarity=0.281  Sum_probs=70.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CC--------------CCCC-----CHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------------LSSF-----DDRLRH   72 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~--------------l~~~-----~~~~~~   72 (283)
                      -+|+|||+||.+...|.++++..              .+-.|+|..   .+              +|.+     ++++.+
T Consensus         9 e~v~IiGSGPAa~tAAiYaarae--------------lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d   74 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAE--------------LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMD   74 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcc--------------cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHH
Confidence            38999999999999999998754              344444431   11              2333     578999


Q ss_pred             HHHHHHHhCCCEEEeCceEEEeCCe---EEEcCCcEEEeeEEEEcCCCCCc
Q 023375           73 YATTQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        73 ~~~~~l~~~gV~v~~~~V~~v~~~~---v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .++++-++.|.++++..|++++-..   ....|.+.+.+|.||++||..+.
T Consensus        75 ~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAk  125 (322)
T KOG0404|consen   75 KMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAK  125 (322)
T ss_pred             HHHHHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEeccccee
Confidence            9999999999999999888876542   33346678999999999998775

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.00  E-value=7.7e-05  Score=69.29  Aligned_cols=49  Identities=20%  Similarity=0.392  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEe--CCeE--EEcCCcEEEeeEEEEcCCCCC
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~--~~~v--~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      .+.+.+..++.|++++.+ +|+++.  ++.+  ...+++++.+|.||.|+|...
T Consensus       111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence            344555567789999999 888874  3333  335677899999999999743

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.99  E-value=9.2e-05  Score=67.73  Aligned_cols=51  Identities=22%  Similarity=0.282  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+. |++++.+ +|++++.+    .|.+++|+++.+|.||.|.|....
T Consensus       114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence            344455555665 9999988 88887533    356678889999999999998775

>PRK13984 putative oxidoreductase; Provisional

Probab=97.99  E-value=2e-05  Score=76.32  Aligned_cols=89  Identities=19%  Similarity=0.224  Sum_probs=66.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C-------CC--CCCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LS--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~-------l~--~~~~~~~~~~~~~l~~~   81 (283)
                      +..++|+|||+|++|+.+|..|++.+              .+|+++++.. .       +|  .+++++.....+.+++.
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~  346 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL  346 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence            45689999999999999999999877              8999998763 2       11  23556666667788999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ||+++.+ .|..    .+.+++ ....+|.||+|+|..+
T Consensus       347 gv~~~~~~~v~~----~~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        347 GVKIHLNTRVGK----DIPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             CcEEECCCEeCC----cCCHHH-HHhcCCEEEEEcCcCC
Confidence            9999998 5521    111111 2357999999999864

>PRK09897 hypothetical protein; Provisional

Probab=97.99  E-value=7.4e-05  Score=70.97  Aligned_cols=42  Identities=21%  Similarity=0.172  Sum_probs=30.0

Q ss_pred             HhCC--CEEEeC-ceEEEeCC--e--EEEcC-CcEEEeeEEEEcCCCCCc
Q 023375           79 SKSG--VRLVRG-IVKDVDSQ--K--LILND-GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~g--V~v~~~-~V~~v~~~--~--v~~~~-g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.|  ++++.+ +|++++.+  +  |++.+ ++.+.+|.||+|+|..++
T Consensus       118 ~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p  167 (534)
T PRK09897        118 RQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWP  167 (534)
T ss_pred             HHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence            3455  677777 88888643  3  44444 467999999999998654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.98  E-value=7.6e-05  Score=68.07  Aligned_cols=93  Identities=19%  Similarity=0.372  Sum_probs=65.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-C----------CC-----------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-S----------SF-----------------   66 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-~----------~~-----------------   66 (283)
                      .|+|||||++|..+|..|.+..            .+.+|.+||+. +.. +          ..                 
T Consensus         1 DviIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~   68 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVY   68 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEE
Confidence            4899999999999999994322            12889999875 320 1          00                 


Q ss_pred             -----------------CHHHHHHHHHHHHhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           67 -----------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        67 -----------------~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                       ...+.+.+.+.+.+.++.++..+|++|+.+    .|++++|+++.++.||-|.|..+.
T Consensus        69 ~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   69 FPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence                             123445555666655655555589998765    357889999999999999996544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08013 oxidoreductase; Provisional

Probab=97.98  E-value=0.00012  Score=67.31  Aligned_cols=50  Identities=20%  Similarity=0.185  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           71 RHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        71 ~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+.+.+. ||+++.+ +|++++.+    .+++.+|+++.+|.||-|-|....
T Consensus       114 ~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~  169 (400)
T PRK08013        114 HYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW  169 (400)
T ss_pred             HHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence            33344444554 7999988 88888543    356678999999999999998654

>PRK07045 putative monooxygenase; Reviewed

Probab=97.97  E-value=0.0001  Score=67.45  Aligned_cols=51  Identities=25%  Similarity=0.369  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHh-CCCEEEeC-ceEEEeCC------eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSK-SGVRLVRG-IVKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~-~gV~v~~~-~V~~v~~~------~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+ .|++++.+ +|++++.+      .|++++|+++.+|.||-|.|....
T Consensus       108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM  166 (388)
T ss_pred             HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence            34444444443 47999999 88888542      366778899999999999998764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.97  E-value=1.1e-05  Score=75.02  Aligned_cols=90  Identities=22%  Similarity=0.268  Sum_probs=68.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+|||+||.|+.+|..|+..+              +.|+++++. ...       |  .++.++.+...+.|++.
T Consensus       121 ~tg~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~  186 (457)
T COG0493         121 RTGKKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERS  186 (457)
T ss_pred             CCCCEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHc
Confidence            34489999999999999999999988              999999985 321       3  24678889999999999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ||+|+.+ ++-.    .+++++ ..-++|.|++++|..-.
T Consensus       187 Gv~~~~~~~vG~----~it~~~-L~~e~Dav~l~~G~~~~  221 (457)
T COG0493         187 GVEFKLNVRVGR----DITLEE-LLKEYDAVFLATGAGKP  221 (457)
T ss_pred             CeEEEEcceECC----cCCHHH-HHHhhCEEEEeccccCC
Confidence            9999998 5521    222221 11235999999997544

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.96  E-value=0.00011  Score=67.37  Aligned_cols=61  Identities=16%  Similarity=0.285  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcE-EEeeEEEEcCCCCCchhhhccCCCCC
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS  131 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~-i~~d~vi~a~G~~~~~~~~~~~l~~~  131 (283)
                      ...+.+.+.++|++++++ +|+.++.  +   .+.+.+|++ +.|+.||.|+|..+..+.+.++++.+
T Consensus       156 t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~  223 (429)
T COG0579         156 TRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED  223 (429)
T ss_pred             HHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence            344445566789999999 8998864  3   245567766 99999999999999888888776653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.96  E-value=2e-05  Score=70.89  Aligned_cols=96  Identities=20%  Similarity=0.234  Sum_probs=54.5

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------CC-------------
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------FD-------------   67 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~---------~~-------------   67 (283)
                      ..+.++|+|||||.+|.|++..|.+..+.            .+|+++.++ .+.|.         +.             
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~------------~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~  254 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPE------------AKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDE  254 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHHHHH-TT------------EEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HH
T ss_pred             ccCCCeEEEECCcHhHHHHHHHHHhCCCC------------cEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHH
Confidence            45678999999999999999999987532            799999886 33221         11             


Q ss_pred             ------------------HHHHHHHHHHH------HhCCCEEEeC-ceEEEeC--C-eE--EEcC-----CcEEEeeEEE
Q 023375           68 ------------------DRLRHYATTQL------SKSGVRLVRG-IVKDVDS--Q-KL--ILND-----GTEVPYGLLV  112 (283)
Q Consensus        68 ------------------~~~~~~~~~~l------~~~gV~v~~~-~V~~v~~--~-~v--~~~~-----g~~i~~d~vi  112 (283)
                                        +++.+.+.+.+      .+..+.++.+ +|++++.  + ++  .+.+     ..++.+|.||
T Consensus       255 ~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~Vi  334 (341)
T PF13434_consen  255 ERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVI  334 (341)
T ss_dssp             HHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEE
T ss_pred             HHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEE
Confidence                              12222222221      2335788888 7877743  2 33  3333     2478999999


Q ss_pred             EcCCCC
Q 023375          113 WSTGVG  118 (283)
Q Consensus       113 ~a~G~~  118 (283)
                      +|||.+
T Consensus       335 lATGy~  340 (341)
T PF13434_consen  335 LATGYR  340 (341)
T ss_dssp             E---EE
T ss_pred             EcCCcc
Confidence            999964

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.95  E-value=8.3e-05  Score=70.15  Aligned_cols=92  Identities=21%  Similarity=0.313  Sum_probs=65.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---------CCC---------C------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---------EIL---------S------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---------~~l---------~------------   64 (283)
                      -.++|||+|+.|..+|..+++.+              .+|++|++.         .+-         |            
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G--------------~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~   68 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYG--------------AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQ   68 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHH
Confidence            36999999999999999999987              899999852         010         0            


Q ss_pred             ------C--C--CH------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEc--CC--cEEEeeEEE
Q 023375           65 ------S--F--DD------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLV  112 (283)
Q Consensus        65 ------~--~--~~------------------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~d~vi  112 (283)
                            .  +  .+                  .+.......+++.||+++.+.-.-++++.|...  +|  +++.+|.+|
T Consensus        69 ~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lV  148 (484)
T TIGR01438        69 ALKDSRNYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFL  148 (484)
T ss_pred             HHhhhhhcCcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEE
Confidence                  0  0  00                  112233345677899999885444566666654  33  369999999


Q ss_pred             EcCCCCCc
Q 023375          113 WSTGVGPS  120 (283)
Q Consensus       113 ~a~G~~~~  120 (283)
                      +|||.+|.
T Consensus       149 IATGs~p~  156 (484)
T TIGR01438       149 IATGERPR  156 (484)
T ss_pred             EecCCCCC
Confidence            99999986

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.94  E-value=0.00011  Score=58.39  Aligned_cols=37  Identities=24%  Similarity=0.469  Sum_probs=28.8

Q ss_pred             CCCEEE--eCceEEEeCC----eEEEcCCcEEEeeEEEEcCCC
Q 023375           81 SGVRLV--RGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        81 ~gV~v~--~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      .+|++.  ..+|++|...    .+++++|..+.+|.||+|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            466654  3478888654    477899999999999999995

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.94  E-value=0.00016  Score=67.21  Aligned_cols=92  Identities=24%  Similarity=0.372  Sum_probs=66.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------------------------C----
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------S----   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------------------------~----   65 (283)
                      -.++|||+|+.|..+|..+++++              .+|.++|+. .+..                        .    
T Consensus         5 yDvvVIG~GpaG~~aA~raa~~G--------------~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~   70 (454)
T COG1249           5 YDVVVIGAGPAGYVAAIRAAQLG--------------LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKE   70 (454)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccc
Confidence            47999999999999999999988              558999887 4421                        0    


Q ss_pred             ---------CC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcC--CcEEEeeEEEEcCCCCCc
Q 023375           66 ---------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILND--GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        66 ---------~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~--g~~i~~d~vi~a~G~~~~  120 (283)
                               ++            ..+....+..+++.||+++.+...=++++.|...+  .+++.++.+|+|||.+|.
T Consensus        71 ~Gi~~~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~  148 (454)
T COG1249          71 YGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPR  148 (454)
T ss_pred             cceecCCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCc
Confidence                     00            01122233445667999998844334467777765  478999999999999997

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.93  E-value=0.0001  Score=69.50  Aligned_cols=93  Identities=16%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC---------CCC---------C----------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN---------EIL---------S----------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~---------~~l---------~----------   64 (283)
                      .-.++|||||+.|..+|..+++. +              .+|.|||+.         .+.         |          
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g--------------~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~   68 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYK--------------KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQY   68 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcC--------------CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHH
Confidence            35799999999999999999986 6              899999952         120         0          


Q ss_pred             --------CC-----------C------------HHHHHHHHHHHHh-CCCEEEeCceEEEeCCeEEEcC--------Cc
Q 023375           65 --------SF-----------D------------DRLRHYATTQLSK-SGVRLVRGIVKDVDSQKLILND--------GT  104 (283)
Q Consensus        65 --------~~-----------~------------~~~~~~~~~~l~~-~gV~v~~~~V~~v~~~~v~~~~--------g~  104 (283)
                              .+           +            .++.+...+.|++ .||+++.++-.-++++.|...+        .+
T Consensus        69 ~~~~~~~~~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~  148 (486)
T TIGR01423        69 MDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKE  148 (486)
T ss_pred             HHHHHHhhccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcce
Confidence                    00           0            0112222333555 4899998854334556665531        24


Q ss_pred             EEEeeEEEEcCCCCCc
Q 023375          105 EVPYGLLVWSTGVGPS  120 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~~  120 (283)
                      ++.+|.+|+|||.+|.
T Consensus       149 ~~~~d~lIIATGs~p~  164 (486)
T TIGR01423       149 RLQAEHILLATGSWPQ  164 (486)
T ss_pred             EEECCEEEEecCCCCC
Confidence            7999999999999986

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.92  E-value=0.00015  Score=66.60  Aligned_cols=51  Identities=16%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHh-CCCEEEeC-ceEEEeCC--e--EEE---cCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~-~gV~v~~~-~V~~v~~~--~--v~~---~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+ .+++++.+ +|++++.+  .  +++   .+++++.+|.||-|-|....
T Consensus       109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~  168 (400)
T PRK06475        109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM  168 (400)
T ss_pred             HHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence            33444444444 47999999 88888653  3  344   23457999999999998764

>TIGR00275 flavoprotein, HI0933 family

Probab=97.92  E-value=9.8e-05  Score=67.97  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      .+.+.+.+.+++.|++++.+ +|+++..+    .+.+ +++++.+|.||+|+|...
T Consensus       106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       106 DVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence            44555666677889999988 78888543    2333 566899999999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.91  E-value=0.00017  Score=65.25  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=37.7

Q ss_pred             HHHHHHHhC-CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCchhh
Q 023375           73 YATTQLSKS-GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV  123 (283)
Q Consensus        73 ~~~~~l~~~-gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~  123 (283)
                      .+.+.+.+. |++++.+ +|++++.+.|.+.+|+ +.+|.||+|+|.....++
T Consensus       150 ~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~-i~a~~VV~A~G~~s~~l~  201 (365)
T TIGR03364       150 ALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD-VHADQVFVCPGADFETLF  201 (365)
T ss_pred             HHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc-EEeCEEEECCCCChhhhC
Confidence            344444554 9999988 8999987777777664 789999999998765543

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.91  E-value=3.1e-05  Score=74.47  Aligned_cols=89  Identities=21%  Similarity=0.311  Sum_probs=64.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~   81 (283)
                      ...++|+|||+|++|+.+|..|++.+              .+|+++++. .+.       |  .++.+....-.+.+.+.
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~  200 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL  200 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence            45689999999999999999999877              889999975 321       1  34556666666778889


Q ss_pred             CCEEEeC-ce-EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IV-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V-~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |++++.+ .+ .++..+.+      ...+|.||+|+|..+.
T Consensus       201 Gv~~~~~~~~~~~~~~~~~------~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        201 GVEVRLGVRVGEDITLEQL------EGEFDAVFVAIGAQLG  235 (564)
T ss_pred             CCEEEeCCEECCcCCHHHH------HhhCCEEEEeeCCCCC
Confidence            9999888 44 33221111      1248999999998654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.90  E-value=0.00018  Score=65.77  Aligned_cols=50  Identities=20%  Similarity=0.296  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+. ++. +.+ +|++++.+    .|++++|+++.+|.||.|.|....
T Consensus       113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  168 (388)
T PRK07494        113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP  168 (388)
T ss_pred             HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence            344445555555 466 556 78887533    366678889999999999998764

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.90  E-value=0.00019  Score=65.68  Aligned_cols=55  Identities=29%  Similarity=0.380  Sum_probs=38.0

Q ss_pred             HHHHHHHh-CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCC
Q 023375           73 YATTQLSK-SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL  128 (283)
Q Consensus        73 ~~~~~l~~-~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l  128 (283)
                      .+.+.+.+ .|++++.+ +|+++..+    .|++++|+++.+|.||.|.|.... +.+.+++
T Consensus       117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~~~  177 (395)
T PRK05732        117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA-LREALGI  177 (395)
T ss_pred             HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh-hHHhhCC
Confidence            34444444 47999988 78887532    356678888999999999998765 3333343

>PRK06996 hypothetical protein; Provisional

Probab=97.89  E-value=0.00024  Score=65.26  Aligned_cols=60  Identities=12%  Similarity=0.018  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEcCC---cEEEeeEEEEcCCCCCchhhhccC
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDG---TEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~g---~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      ..+.+.+.+.+.+.|++++.+ ++++++.+  +  +.+.++   +++.+|.||-|-|...+...+.++
T Consensus       115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~  182 (398)
T PRK06996        115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAG  182 (398)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence            456777788888889999998 88888543  3  445544   589999999999964443333333

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.89  E-value=0.00012  Score=67.01  Aligned_cols=50  Identities=18%  Similarity=0.405  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhCCCEEEeCceEEEeCC----eEEEcC------C--cEEEeeEEEEcCCCCCc
Q 023375           71 RHYATTQLSKSGVRLVRGIVKDVDSQ----KLILND------G--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~------g--~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+...+.|++++.++|+++..+    .+++.+      +  .++.+|.||-|.|....
T Consensus        95 d~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~  156 (388)
T TIGR02023        95 DSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP  156 (388)
T ss_pred             HHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence            34455556678999976677777532    244442      2  47899999999997654

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.88  E-value=0.00017  Score=65.64  Aligned_cols=51  Identities=14%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~~g-V~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+.+.+.+.+ ++++.+ +++++..+    .|.++++ ++.+|.||-|-|....
T Consensus       105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            34455555556654 888888 78887433    3566565 8999999999998765

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.88  E-value=7.5e-05  Score=71.60  Aligned_cols=96  Identities=22%  Similarity=0.316  Sum_probs=75.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC------C-CCC-----CHHHHHHHHHHHHh
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI------L-SSF-----DDRLRHYATTQLSK   80 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~------l-~~~-----~~~~~~~~~~~l~~   80 (283)
                      ..+++|||.|..|.-+..++.+..++           ..+||++... +.      + +.+     -+++.-...++.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~-----------~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~   71 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPD-----------LYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEE   71 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcc-----------cceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHH
Confidence            36899999999999999999985432           3789998653 11      1 222     23444455678899


Q ss_pred             CCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .||+++.+ +|..|+.+  .|++++|.++.||.+|+|||+.|.
T Consensus        72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf  114 (793)
T COG1251          72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF  114 (793)
T ss_pred             cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence            99999999 89999876  577788999999999999999997

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.88  E-value=0.0002  Score=65.26  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+.+.+.+ .|++++.+ +|++++.  +  .+++++|+++.+|.||.|.|....
T Consensus       106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  163 (382)
T TIGR01984       106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK  163 (382)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence            345555566666 49999988 8988854  3  366678888999999999997654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.87  E-value=0.00019  Score=68.59  Aligned_cols=51  Identities=24%  Similarity=0.263  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhC-CCEEEeC-ceEEEeCC--e--EEEc--CC--cEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~--~--v~~~--~g--~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+. |++++.+ +|++++.+  +  ++++  +|  +++.+|.||-|.|....
T Consensus       115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~  175 (538)
T PRK06183        115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF  175 (538)
T ss_pred             HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence            344455555554 8999999 89988643  3  4454  46  47999999999998664

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.87  E-value=9.8e-05  Score=67.51  Aligned_cols=40  Identities=15%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             CCCEEEeC-ceEEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .|++++.+ +|++++.  +  .|++++|+++.+|.||-|.|..+.
T Consensus       124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~  168 (384)
T PRK08849        124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ  168 (384)
T ss_pred             CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence            36889888 7888854  3  477789999999999999998765

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.86  E-value=0.00029  Score=65.34  Aligned_cols=130  Identities=22%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-----------------------------   63 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-----------------------------   63 (283)
                      .++|+|||+|++|+..|.+|.+.+              .+++++|+. .+.                             
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~   71 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMM   71 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhh
Confidence            579999999999999999999876              778888775 331                             


Q ss_pred             --CCC-----------C-HHHHHHHHHHHHhCCC--EEEeC-ceEEEeCC-----eEEEcCC----cEEEeeEEEEcCCC
Q 023375           64 --SSF-----------D-DRLRHYATTQLSKSGV--RLVRG-IVKDVDSQ-----KLILNDG----TEVPYGLLVWSTGV  117 (283)
Q Consensus        64 --~~~-----------~-~~~~~~~~~~l~~~gV--~v~~~-~V~~v~~~-----~v~~~~g----~~i~~d~vi~a~G~  117 (283)
                        +.+           + .++.+|++...+..++  .+..+ +|..|+..     .|.+.++    ++.-+|.|++|+|.
T Consensus        72 ~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh  151 (448)
T KOG1399|consen   72 GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGH  151 (448)
T ss_pred             cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccC
Confidence              000           1 2567788888888776  34555 55555432     4666543    36779999999999


Q ss_pred             CCchhhhcc-CCCC-CCCCccccCCCccc---CCCCCEEEecccc
Q 023375          118 GPSTLVKSL-DLPK-SPGGRIGIDEWLRV---PSVQDVFAVGDCS  157 (283)
Q Consensus       118 ~~~~~~~~~-~l~~-~~~g~i~Vd~~l~~---~~~~~VfaiGD~a  157 (283)
                      -..+-+... +... .-.|.+.-....+.   -....|.+||--.
T Consensus       152 ~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~  196 (448)
T KOG1399|consen  152 YVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN  196 (448)
T ss_pred             cCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCc
Confidence            842322222 2111 12343333322222   1246788888544

>PRK14727 putative mercuric reductase; Provisional

Probab=97.85  E-value=0.00016  Score=68.12  Aligned_cols=94  Identities=24%  Similarity=0.346  Sum_probs=63.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------------------------C
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------------------------S   64 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------------------------~   64 (283)
                      ...+++|||+|+.|+.+|..+++.+              .+|++||++ .+.                           +
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g--------------~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~   80 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHG--------------ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNP   80 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcc
Confidence            3468999999999999999999987              889999874 221                           0


Q ss_pred             ---------CCCHH-HH-------H-----HHHHHHHhC-CCEEEeCceEEEeCCeEE--EcCCc--EEEeeEEEEcCCC
Q 023375           65 ---------SFDDR-LR-------H-----YATTQLSKS-GVRLVRGIVKDVDSQKLI--LNDGT--EVPYGLLVWSTGV  117 (283)
Q Consensus        65 ---------~~~~~-~~-------~-----~~~~~l~~~-gV~v~~~~V~~v~~~~v~--~~~g~--~i~~d~vi~a~G~  117 (283)
                               .++.. +.       .     ...+.++.. ||+++.+...-++++.+.  +.+|+  ++.+|.+|+|||.
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs  160 (479)
T PRK14727         81 FDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS  160 (479)
T ss_pred             ccCcccCCCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC
Confidence                     01110 00       0     012223333 889888765445555444  45663  6999999999999


Q ss_pred             CCc
Q 023375          118 GPS  120 (283)
Q Consensus       118 ~~~  120 (283)
                      +|.
T Consensus       161 ~p~  163 (479)
T PRK14727        161 TPT  163 (479)
T ss_pred             CCC
Confidence            886

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.84  E-value=0.0002  Score=68.57  Aligned_cols=90  Identities=21%  Similarity=0.328  Sum_probs=63.3

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------------------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------------------------------   63 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------------------------------   63 (283)
                      .|+|||||++|+++|..++..+              .+|.++++. ...                               
T Consensus         2 DViVIGaG~AGl~aA~ala~~G--------------~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~   67 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMG--------------AKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKA   67 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCC--------------CCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHH
Confidence            5899999999999999999877              666666643 110                               


Q ss_pred             ----------------C-------CCC-HHHHHHHHHHHHhC-CCEEEeCceEEEe---CC---eEEEcCCcEEEeeEEE
Q 023375           64 ----------------S-------SFD-DRLRHYATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLV  112 (283)
Q Consensus        64 ----------------~-------~~~-~~~~~~~~~~l~~~-gV~v~~~~V~~v~---~~---~v~~~~g~~i~~d~vi  112 (283)
                                      |       .++ +.+...+.+.+++. +++++.+.|+++.   .+   +|.+.+|.++.++.||
T Consensus        68 ~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VI  147 (617)
T TIGR00136        68 ADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVI  147 (617)
T ss_pred             HHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEE
Confidence                            0       001 11223455556666 7899877666652   22   4778888899999999


Q ss_pred             EcCCCCC
Q 023375          113 WSTGVGP  119 (283)
Q Consensus       113 ~a~G~~~  119 (283)
                      +|+|...
T Consensus       148 LATGtfL  154 (617)
T TIGR00136       148 ITTGTFL  154 (617)
T ss_pred             EccCccc
Confidence            9999984

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.82  E-value=0.00036  Score=63.36  Aligned_cols=50  Identities=22%  Similarity=0.266  Sum_probs=35.3

Q ss_pred             HHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhcc
Q 023375           76 TQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSL  126 (283)
Q Consensus        76 ~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~  126 (283)
                      +.+.+.|++++.+ +|+++..+    .|.+++| ++.+|.||.|+|.....+...+
T Consensus       157 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~  211 (376)
T PRK11259        157 RLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL  211 (376)
T ss_pred             HHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcccc
Confidence            3445678998887 78887542    2455555 7999999999998766555433

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.81  E-value=0.0003  Score=63.94  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=37.8

Q ss_pred             HHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           72 HYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      ..+.+.+++.|++++.+ +|++++.+  .  |.++++ ++.+|.||+|+|.....+...++
T Consensus       149 ~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g  208 (380)
T TIGR01377       149 RALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLG  208 (380)
T ss_pred             HHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcc
Confidence            33444456678999888 78888653  2  444444 79999999999987655555444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06185 hypothetical protein; Provisional

Probab=97.80  E-value=0.00037  Score=64.10  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHh-CCCEEEeC-ceEEEeC--Ce---EEE--cCCc-EEEeeEEEEcCCCCCchhhhccCCC
Q 023375           70 LRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LIL--NDGT-EVPYGLLVWSTGVGPSTLVKSLDLP  129 (283)
Q Consensus        70 ~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~~---v~~--~~g~-~i~~d~vi~a~G~~~~~~~~~~~l~  129 (283)
                      +.+.+.+.+.+ .||+++.+ +++++..  +.   |.+  .+|+ ++.+|.||.|.|.... +-+.++++
T Consensus       110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~gi~  178 (407)
T PRK06185        110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALAGLE  178 (407)
T ss_pred             HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHcCCC
Confidence            44445555555 48999988 7888753  32   333  3564 7999999999998764 33334443

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.78  E-value=0.00022  Score=65.90  Aligned_cols=39  Identities=23%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ++.++.+ +|++++.+    .+.+++|+++.+|.||.|.|....
T Consensus       117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            3556777 78888643    366788989999999999998764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK10015 oxidoreductase; Provisional

Probab=97.78  E-value=0.00029  Score=65.44  Aligned_cols=49  Identities=14%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEeC--CeEE--EcCCcEEEeeEEEEcCCCCC
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v~--~~~g~~i~~d~vi~a~G~~~  119 (283)
                      .+.+.+..++.|++++.+ +|+++..  +.+.  ..++.++.+|.||.|.|...
T Consensus       111 d~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s  164 (429)
T PRK10015        111 DPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS  164 (429)
T ss_pred             HHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence            344556667789999998 8888753  3332  23456799999999999744

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=8.6e-05  Score=65.36  Aligned_cols=107  Identities=16%  Similarity=0.208  Sum_probs=75.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHH--HhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDV--RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~--~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      +.+-.|+||||||.|..+|.+.++.+-++-  ..+|..  +-.+..=||.- .....-++++...+++..+++.|++...
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGG--QvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~  286 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG--QVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL  286 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCC--eeccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence            566799999999999999999988763210  111111  00111111211 2223457899999999999999999876


Q ss_pred             -ceEEEeC----C---eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           89 -IVKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        89 -~V~~v~~----~---~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                       +.+++++    +   .|++++|..+.+.++|++||.+-.
T Consensus       287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR  326 (520)
T COG3634         287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWR  326 (520)
T ss_pred             hhhhcceecCCCCccEEEEecCCceeccceEEEecCcchh
Confidence             6666655    2   588999999999999999998754

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=97.77  E-value=5.7e-05  Score=63.98  Aligned_cols=92  Identities=25%  Similarity=0.313  Sum_probs=62.6

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCE----------E
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR----------L   85 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~----------v   85 (283)
                      +++|||||.+|+.+|..|+.+.+.            .+|.|+.++.+....  .--+.+-++|++..|+          +
T Consensus         1 kfivvgggiagvscaeqla~~~ps------------a~illitass~vksv--tn~~~i~~ylekfdv~eq~~~elg~~f   66 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPS------------AEILLITASSFVKSV--TNYQKIGQYLEKFDVKEQNCHELGPDF   66 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCC------------CcEEEEeccHHHHHH--hhHHHHHHHHHhcCccccchhhhcccH
Confidence            479999999999999999987532            799999887544321  1112233344444332          1


Q ss_pred             E--eCceEEEe--CCeEEEcCCcEEEeeEEEEcCCCCCch
Q 023375           86 V--RGIVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        86 ~--~~~V~~v~--~~~v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      .  .+.|..++  +..+.+++|+++.|+.+.+|+|.+|.-
T Consensus        67 ~~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   67 RRFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             HHHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcce
Confidence            1  11233332  346899999999999999999999973

>TIGR03452 mycothione_red mycothione reductase

Probab=97.75  E-value=0.00016  Score=67.59  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=32.1

Q ss_pred             CCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .||+++.+...-.+...|.+.+|+++.+|.+|+|||.+|.
T Consensus       105 ~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~  144 (452)
T TIGR03452       105 PNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPY  144 (452)
T ss_pred             CCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCC
Confidence            6899888743323566788888888999999999999986

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.75  E-value=8.2e-05  Score=68.53  Aligned_cols=31  Identities=32%  Similarity=0.407  Sum_probs=29.0

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||||.+|+|+|..|++.+              .+|+|+|+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r   32 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR   32 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence            6999999999999999999987              999999975

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.73  E-value=0.00046  Score=63.48  Aligned_cols=23  Identities=39%  Similarity=0.625  Sum_probs=21.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      .+|+||||||+|..+|..|++.+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G   23 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAG   23 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC
Confidence            37999999999999999999876

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.72  E-value=0.001  Score=61.08  Aligned_cols=130  Identities=17%  Similarity=0.174  Sum_probs=86.5

Q ss_pred             EEEEeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEEcCC--cEEEeeEEEEcCCCC-Cchhh
Q 023375           54 VTLIEANEILSS-FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDG--TEVPYGLLVWSTGVG-PSTLV  123 (283)
Q Consensus        54 V~li~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~~~~g--~~i~~d~vi~a~G~~-~~~~~  123 (283)
                      ..++|-..+-|. .+..+.+.+.+.++++|++++.+ +|.++.  ++.   |.++++  .++.+|.+|+|+|.. +..+.
T Consensus       248 ~~v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~  327 (419)
T TIGR03378       248 LTLCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV  327 (419)
T ss_pred             CCEEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence            344444433343 34678888999999999999998 888875  332   444555  479999999999998 66554


Q ss_pred             hcc--------CCCC----CC---------------CCccccCCCccc----CCCCCEEEeccccccCcCCCCcCCCcch
Q 023375          124 KSL--------DLPK----SP---------------GGRIGIDEWLRV----PSVQDVFAVGDCSGYLESTGKTVLPALA  172 (283)
Q Consensus       124 ~~~--------~l~~----~~---------------~g~i~Vd~~l~~----~~~~~VfaiGD~a~~~~~~~~~~~p~~~  172 (283)
                      +.+        ++++    ++               +-.|.+|+.||.    +..+|+|++|-+....|+...  -... 
T Consensus       328 a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~--gcG~-  404 (419)
T TIGR03378       328 AEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE--GCGS-  404 (419)
T ss_pred             hhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc--CCCc-
Confidence            433        2222    00               113778988883    137999999999876654110  0112 


Q ss_pred             HHHHHHHHHHHHHH
Q 023375          173 QVAERQGKYLFSLL  186 (283)
Q Consensus       173 ~~A~~qg~~~a~~i  186 (283)
                      -+|+..|-++|++|
T Consensus       405 GVai~Ta~~aa~~i  418 (419)
T TIGR03378       405 GVAVSTALHAAEQI  418 (419)
T ss_pred             hhHHHHHHHHHHhh
Confidence            27888899998876

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.72  E-value=0.00036  Score=65.33  Aligned_cols=50  Identities=20%  Similarity=0.428  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhCCCEEEeCceEEEe--CC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           71 RHYATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~~V~~v~--~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+...++||+++.++|.++.  ++    .|++++|+++.+|.+|=|+|.+..
T Consensus       157 d~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  157 DQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            444556666889999988776653  33    477889999999999999998664

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.70  E-value=0.00048  Score=66.02  Aligned_cols=51  Identities=12%  Similarity=0.223  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhC-CCEEEeC-ceEEEeCC--eE--EE--cCCc-EEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ--KL--IL--NDGT-EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~--~v--~~--~~g~-~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+. +++++.+ ++++++.+  .+  ++  .+++ ++.+|.||.|.|..+.
T Consensus       127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~  186 (547)
T PRK08132        127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP  186 (547)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence            334455555554 7999999 88888643  33  33  2454 6899999999998765

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.69  E-value=0.00054  Score=63.82  Aligned_cols=51  Identities=18%  Similarity=0.290  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhCC---CEEEeC-ceEEEeC---------C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSG---VRLVRG-IVKDVDS---------Q--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~g---V~v~~~-~V~~v~~---------~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +...+.+.+.+.+   |+++.+ +|++++.         +  .|++.+|+++.+|.||-|-|....
T Consensus       119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence            4444555566654   999998 8888852         2  467788999999999999998665

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.66  E-value=0.00074  Score=61.92  Aligned_cols=49  Identities=8%  Similarity=0.035  Sum_probs=35.1

Q ss_pred             HHHHHHHHhCCCEEEeC-ceEEEeC-C----eEEE-cCCc--EEEeeEEEEcCCCCCc
Q 023375           72 HYATTQLSKSGVRLVRG-IVKDVDS-Q----KLIL-NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~-~V~~v~~-~----~v~~-~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+...+.|++++.+ ++++++. +    .|++ .+|+  ++.+|.||-|-|....
T Consensus       107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~  164 (392)
T PRK08243        107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV  164 (392)
T ss_pred             HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence            33444446679999998 7887754 2    3566 3664  6899999999998765

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.65  E-value=0.00082  Score=61.92  Aligned_cols=54  Identities=20%  Similarity=0.342  Sum_probs=37.3

Q ss_pred             HHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEcCC-----cEEEeeEEEEcCCCCCchhhhccC
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG-----TEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g-----~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      +.+.+++.|++++.+ +|++++.  +.  +.+.++     .++.+|.||+|+|.....+...++
T Consensus       203 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~  266 (410)
T PRK12409        203 LAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG  266 (410)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence            345566789999998 7888854  33  333332     378999999999987765554433

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.64  E-value=0.00063  Score=62.54  Aligned_cols=91  Identities=23%  Similarity=0.358  Sum_probs=63.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC------------------CCCC--------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------SSFD--------   67 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------------------~~~~--------   67 (283)
                      ..|+|||+||+|..+|..|++.+              .+|.++|+. .+-                  +...        
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~   69 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVT   69 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeee
Confidence            57999999999999999999987              777777764 220                  0010        


Q ss_pred             -------------------------HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCC
Q 023375           68 -------------------------DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTG  116 (283)
Q Consensus        68 -------------------------~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G  116 (283)
                                               ..+-+.+.+..++.|++++.+ ++..+..  ++   .+..++.++.++.||.|.|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG  149 (396)
T COG0644          70 GARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG  149 (396)
T ss_pred             eeEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCC
Confidence                                     123334555667789999998 7877753  22   2223346899999999999


Q ss_pred             CCC
Q 023375          117 VGP  119 (283)
Q Consensus       117 ~~~  119 (283)
                      ..+
T Consensus       150 ~~s  152 (396)
T COG0644         150 VNS  152 (396)
T ss_pred             cch
Confidence            754

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.64  E-value=0.0006  Score=63.92  Aligned_cols=46  Identities=13%  Similarity=0.153  Sum_probs=33.3

Q ss_pred             HHHHHhCCCEEEeC-ceEEEeCCe---EEEcCCcEEEeeEEEEcCCCCCch
Q 023375           75 TTQLSKSGVRLVRG-IVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        75 ~~~l~~~gV~v~~~-~V~~v~~~~---v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      .+.+++.|++++.+ .|++++.+.   |++.+| ++.+|.||+|+|.....
T Consensus       190 ~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~~  239 (460)
T TIGR03329       190 RRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMAS  239 (460)
T ss_pred             HHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEcccccccc
Confidence            34445778999888 788886542   555555 69999999999976443

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.62  E-value=0.00049  Score=67.09  Aligned_cols=32  Identities=13%  Similarity=0.173  Sum_probs=28.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.++|||+|+.|..+|..+++++              .+|.|||..
T Consensus       117 yDviVIG~G~gG~~aA~~aa~~G--------------~kV~lie~~  148 (659)
T PTZ00153        117 YDVGIIGCGVGGHAAAINAMERG--------------LKVIIFTGD  148 (659)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence            37999999999999999999988              889999854

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.59  E-value=0.00015  Score=67.40  Aligned_cols=90  Identities=24%  Similarity=0.386  Sum_probs=60.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC------CCC---------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------SSF---------------------   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------~~~---------------------   66 (283)
                      -.|+|||||.+|+|+|...++++              .++.|+..+ +-+      |..                     
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG--------------~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~   70 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMG--------------AKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGK   70 (621)
T ss_pred             CceEEECCCccchHHHHhhhccC--------------CeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHH
Confidence            57999999999999999999988              555555443 110      000                     


Q ss_pred             ---------------------------CH-HHHHHHHHHHHh-CCCEEEeCceEEEe--C----CeEEEcCCcEEEeeEE
Q 023375           67 ---------------------------DD-RLRHYATTQLSK-SGVRLVRGIVKDVD--S----QKLILNDGTEVPYGLL  111 (283)
Q Consensus        67 ---------------------------~~-~~~~~~~~~l~~-~gV~v~~~~V~~v~--~----~~v~~~~g~~i~~d~v  111 (283)
                                                 +. ..+..+++.++. .++.++.+.|+++.  +    .+|++.+|..+.++.|
T Consensus        71 ~~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aV  150 (621)
T COG0445          71 AADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAV  150 (621)
T ss_pred             hhhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEE
Confidence                                       00 122333444443 46777777555542  2    2588899999999999


Q ss_pred             EEcCCCC
Q 023375          112 VWSTGVG  118 (283)
Q Consensus       112 i~a~G~~  118 (283)
                      |++||.-
T Consensus       151 VlTTGTF  157 (621)
T COG0445         151 VLTTGTF  157 (621)
T ss_pred             EEeeccc
Confidence            9999983

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.59  E-value=0.00033  Score=63.35  Aligned_cols=98  Identities=19%  Similarity=0.281  Sum_probs=68.7

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--CCC---------CHHHHHHHHHHH
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--SSF---------DDRLRHYATTQL   78 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--~~~---------~~~~~~~~~~~l   78 (283)
                      .-+.++|||+|+|..|+.+...|-...              .+|++|.+. .++  |-+         -..+.+-+....
T Consensus        52 ~~kKk~vVVLGsGW~a~S~lk~ldts~--------------YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~  117 (491)
T KOG2495|consen   52 GGKKKRVVVLGSGWGAISLLKKLDTSL--------------YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIA  117 (491)
T ss_pred             CCCCceEEEEcCchHHHHHHHhccccc--------------cceEEeccccceEEeeccCCccccceeehhhhhhHHHHh
Confidence            345689999999999999988886554              899999986 322  333         234555566666


Q ss_pred             HhC--CCEEEeCceEEEeCC--eEE----EcCC----cEEEeeEEEEcCCCCCchh
Q 023375           79 SKS--GVRLVRGIVKDVDSQ--KLI----LNDG----TEVPYGLLVWSTGVGPSTL  122 (283)
Q Consensus        79 ~~~--gV~v~~~~V~~v~~~--~v~----~~~g----~~i~~d~vi~a~G~~~~~~  122 (283)
                      ++.  +++++...-..++++  .|.    ++++    -.+.||.+|+|+|..++++
T Consensus       118 r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  118 RKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             hccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence            655  566666655666665  333    2344    3689999999999999853

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.59  E-value=0.0011  Score=61.92  Aligned_cols=94  Identities=21%  Similarity=0.368  Sum_probs=61.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC----------------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------------------------   63 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l----------------------------   63 (283)
                      ...+|+||||||+|.-+|..|++.+              .+|.|+|+. ...                            
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G--------------~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~  103 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGG--------------IETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTK  103 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhh
Confidence            3468999999999999999999876              556666543 100                            


Q ss_pred             --------------------CC---CC-HHHHHHHHHHHHhCCCEEEeCceEEEeC-----C--eEEEcC-------C--
Q 023375           64 --------------------SS---FD-DRLRHYATTQLSKSGVRLVRGIVKDVDS-----Q--KLILND-------G--  103 (283)
Q Consensus        64 --------------------~~---~~-~~~~~~~~~~l~~~gV~v~~~~V~~v~~-----~--~v~~~~-------g--  103 (283)
                                          +.   ++ ..+.+.+.+...+.|++++.+++.+++.     +  .|++.+       |  
T Consensus       104 ~~~~~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~  183 (450)
T PLN00093        104 MKMISPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP  183 (450)
T ss_pred             heEecCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCc
Confidence                                00   01 1223344455567799998776666641     1  244432       3  


Q ss_pred             cEEEeeEEEEcCCCCCc
Q 023375          104 TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       104 ~~i~~d~vi~a~G~~~~  120 (283)
                      .++.+|.||-|.|....
T Consensus       184 ~~v~a~~VIgADG~~S~  200 (450)
T PLN00093        184 KTLEVDAVIGADGANSR  200 (450)
T ss_pred             cEEEeCEEEEcCCcchH
Confidence            47999999999997553

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.002  Score=59.43  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|||||++|+.+|.+|.+..+.           ...|+++|+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~-----------~~~Isi~e~~   36 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRP-----------SGLISIFEPR   36 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCC-----------CCceEEeccc
Confidence            5899999999999999999876521           2337777764

>PRK07538 hypothetical protein; Provisional

Probab=97.57  E-value=0.00098  Score=61.53  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      ++|+|||||++|+-+|..|++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G   23 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRG   23 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC
Confidence            47999999999999999998875

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.57  E-value=7.4e-05  Score=69.38  Aligned_cols=99  Identities=29%  Similarity=0.407  Sum_probs=26.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------------C------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------S------------------   65 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------------~------------------   65 (283)
                      .|||||||++|+.+|..+++.+              .+|.|||+...+.            .                  
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~   66 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR   66 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS
T ss_pred             CEEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH
Confidence            4899999999999999999988              8999999863321            0                  


Q ss_pred             --------------------CC-HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEEcC---CcEEEeeEEEEcC
Q 023375           66 --------------------FD-DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILND---GTEVPYGLLVWST  115 (283)
Q Consensus        66 --------------------~~-~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~---g~~i~~d~vi~a~  115 (283)
                                          ++ ......+.+.+.+.||+++.+ .|.++..+     +|++.+   ..++.++.+|=||
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaT  146 (428)
T PF12831_consen   67 LRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDAT  146 (428)
T ss_dssp             T-------------------------------------------------------------------------------
T ss_pred             Hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                00 011122344556789999988 78777543     455543   4679999999999


Q ss_pred             CCCCchhhhccCCCC
Q 023375          116 GVGPSTLVKSLDLPK  130 (283)
Q Consensus       116 G~~~~~~~~~~~l~~  130 (283)
                      |.  -.+....|.+.
T Consensus       147 G~--g~l~~~aG~~~  159 (428)
T PF12831_consen  147 GD--GDLAALAGAPY  159 (428)
T ss_dssp             ---------------
T ss_pred             cc--ccccccccccc
Confidence            94  23444445443

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.55  E-value=0.0013  Score=60.41  Aligned_cols=49  Identities=10%  Similarity=0.110  Sum_probs=33.9

Q ss_pred             HHHHHHHHhCCCEEEeC-ceEEEeC---C--eEEEc-CCc--EEEeeEEEEcCCCCCc
Q 023375           72 HYATTQLSKSGVRLVRG-IVKDVDS---Q--KLILN-DGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~-~V~~v~~---~--~v~~~-~g~--~i~~d~vi~a~G~~~~  120 (283)
                      ..+.+.+.+.|++++.+ +++++..   +  .|++. +|+  ++.+|.||-|-|....
T Consensus       107 ~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~  164 (390)
T TIGR02360       107 RDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV  164 (390)
T ss_pred             HHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence            33445556678888877 6555522   2  57775 775  6899999999998664

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.55  E-value=0.001  Score=58.58  Aligned_cols=54  Identities=17%  Similarity=0.186  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEe----CC---eEEEcCCcEEEeeEEEEcCCCCCchhhh
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVD----SQ---KLILNDGTEVPYGLLVWSTGVGPSTLVK  124 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~----~~---~v~~~~g~~i~~d~vi~a~G~~~~~~~~  124 (283)
                      .+.++..+++.|+.++.+ .|..++    ++   .|.+++|..+.++.+|+++|..-+.++.
T Consensus       156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~  217 (399)
T KOG2820|consen  156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP  217 (399)
T ss_pred             HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence            344566677899999998 676665    22   5778899999999999999987776665

>PRK06126 hypothetical protein; Provisional

Probab=97.51  E-value=0.00093  Score=64.02  Aligned_cols=49  Identities=18%  Similarity=0.272  Sum_probs=33.8

Q ss_pred             HHHHHHHHh-CCCEEEeC-ceEEEeCC--e--EEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375           72 HYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        72 ~~~~~~l~~-~gV~v~~~-~V~~v~~~--~--v~~---~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      ..+.+.+++ .+++++.+ +|++++.+  +  +++   .+|+  ++.+|.||.|.|....
T Consensus       130 ~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        130 PILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             HHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence            334444444 48999999 89988643  2  333   2353  6899999999998664

>PRK11445 putative oxidoreductase; Provisional

Probab=97.45  E-value=0.0019  Score=58.29  Aligned_cols=42  Identities=17%  Similarity=0.275  Sum_probs=30.8

Q ss_pred             HhCCCEEEeC-ceEEEeC--Ce--EEE-cCCc--EEEeeEEEEcCCCCCc
Q 023375           79 SKSGVRLVRG-IVKDVDS--QK--LIL-NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~gV~v~~~-~V~~v~~--~~--v~~-~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      .+.||+++.+ ++++++.  ++  |.+ ++|+  ++.+|.||.|.|....
T Consensus       109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445        109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            3568999988 7888754  33  443 4564  6899999999998654

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.44  E-value=0.0027  Score=52.81  Aligned_cols=92  Identities=21%  Similarity=0.330  Sum_probs=56.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------CC------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FD------------------   67 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------~~------------------   67 (283)
                      ...|+|||+||+|+.+|.+|++.+              .+|.++|++ .+-..       ++                  
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~   82 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP   82 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT--
T ss_pred             cCCEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce
Confidence            368999999999999999999987              999999986 33110       10                  


Q ss_pred             -------------HH-HHHHHHHHHHhCCCEEEeC-ceEEE--eC-C---eEEEc-----------CCcEEEeeEEEEcC
Q 023375           68 -------------DR-LRHYATTQLSKSGVRLVRG-IVKDV--DS-Q---KLILN-----------DGTEVPYGLLVWST  115 (283)
Q Consensus        68 -------------~~-~~~~~~~~l~~~gV~v~~~-~V~~v--~~-~---~v~~~-----------~g~~i~~d~vi~a~  115 (283)
                                   .+ .+..+.+.+ +.|++++.. .|+++  .+ +   +|.+.           |--++.+..||=+|
T Consensus        83 y~~~~~g~~v~d~~~~~s~L~s~a~-~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaT  161 (230)
T PF01946_consen   83 YEEYGDGYYVADSVEFTSTLASKAI-DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDAT  161 (230)
T ss_dssp             -EE-SSEEEES-HHHHHHHHHHHHH-TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE--
T ss_pred             eEEeCCeEEEEcHHHHHHHHHHHHh-cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCC
Confidence                         11 222233333 489999988 77765  33 3   23321           22479999999999


Q ss_pred             CCCCc
Q 023375          116 GVGPS  120 (283)
Q Consensus       116 G~~~~  120 (283)
                      |....
T Consensus       162 GHda~  166 (230)
T PF01946_consen  162 GHDAE  166 (230)
T ss_dssp             -SSSS
T ss_pred             CCchH
Confidence            98765

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00049  Score=63.07  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=21.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      -.|+|||||.+|+|+|...++.+
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~G   51 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLG   51 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcC
Confidence            38999999999999999999988

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.42  E-value=0.00063  Score=67.81  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=28.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|||||++|+-+|..|++.+.            +.+|+|+|+.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~------------G~~V~vlEr~   34 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDP------------AHEVTVVERN   34 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCC------------CCeEEEEecC
Confidence            479999999999999999988621            1788888876

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.39  E-value=0.0016  Score=62.41  Aligned_cols=50  Identities=14%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             HHhCCCEEEeC-ceEEEeC--Ce---EEEc---CC--cEEEeeEEEEcCCCCCchhhhccC
Q 023375           78 LSKSGVRLVRG-IVKDVDS--QK---LILN---DG--TEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        78 l~~~gV~v~~~-~V~~v~~--~~---v~~~---~g--~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      ..++|++++++ +|+++..  +.   |++.   ++  .++.++.||.|+|.....+.+..+
T Consensus       159 A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g  219 (546)
T PRK11101        159 AKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD  219 (546)
T ss_pred             HHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence            34779999988 7888753  22   4442   23  478999999999987766554433

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.39  E-value=0.0018  Score=63.55  Aligned_cols=47  Identities=15%  Similarity=0.217  Sum_probs=33.4

Q ss_pred             HHHhCCCEEEeC-ceEEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCchhhh
Q 023375           77 QLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK  124 (283)
Q Consensus        77 ~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~~~~  124 (283)
                      .+++ |++++.+ +|++++.  +.  |.+.+|+.+.+|.||.|+|.....+..
T Consensus       417 ~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~  468 (662)
T PRK01747        417 LAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQ  468 (662)
T ss_pred             hccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccc
Confidence            3345 7888887 7887753  33  455566677899999999987765444

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.38  E-value=0.0014  Score=63.84  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++..+|+|||||++|+-+|..|++.+              .+|+|+|+.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~G--------------i~V~V~Er~  113 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKG--------------FDVLVFEKD  113 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecc
Confidence            56689999999999999999999876              677777653

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.38  E-value=0.00081  Score=61.78  Aligned_cols=71  Identities=24%  Similarity=0.329  Sum_probs=50.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------CCHH------HHHHHHHH
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FDDR------LRHYATTQ   77 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------~~~~------~~~~~~~~   77 (283)
                      .-.++++|||||.+|+++|.+|++.+              .+|+|+|.+ .+...       ||..      +.-.+.+.
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v  187 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEV  187 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhh
Confidence            34579999999999999999999998              999999987 44221       1111      11222222


Q ss_pred             HHhCCCEEEeC-ceEEEeCC
Q 023375           78 LSKSGVRLVRG-IVKDVDSQ   96 (283)
Q Consensus        78 l~~~gV~v~~~-~V~~v~~~   96 (283)
                      -..-+|++++. +|++|++.
T Consensus       188 ~~hp~i~l~TyaeV~ev~G~  207 (622)
T COG1148         188 SNHPNIELITYAEVEEVSGS  207 (622)
T ss_pred             ccCCceeeeeeeeeeeeccc
Confidence            33457999998 89998875

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.36  E-value=0.002  Score=61.18  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEE--cCC--cEEEeeEEEEcCCC
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLIL--NDG--TEVPYGLLVWSTGV  117 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~--~~g--~~i~~d~vi~a~G~  117 (283)
                      +...+.+.+++.||+++++ +|+++..+     +|.+  .++  .++.++.||+|+|.
T Consensus       192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG  249 (506)
T PRK06481        192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGG  249 (506)
T ss_pred             HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence            3344555567788999888 78887542     2434  333  36889999999984

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.35  E-value=0.0028  Score=58.31  Aligned_cols=52  Identities=10%  Similarity=0.058  Sum_probs=35.9

Q ss_pred             HHHHHhCCCEEEeC-ceEEEeC---Ce---EEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           75 TTQLSKSGVRLVRG-IVKDVDS---QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        75 ~~~l~~~gV~v~~~-~V~~v~~---~~---v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      .+.+.+.|++++.+ +|++++.   +.   |.+.+| ++.++.||+|+|.....+.+.++
T Consensus       190 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g  248 (407)
T TIGR01373       190 ARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAG  248 (407)
T ss_pred             HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcC
Confidence            34456789999988 8888852   22   455566 69999999998876654444333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN02985 squalene monooxygenase

Probab=97.30  E-value=0.0028  Score=60.26  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=22.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhh
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      ....+|+|||||++|+-+|..|++.+
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G   66 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDG   66 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcC
Confidence            34468999999999999999999866

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.26  E-value=0.0013  Score=60.08  Aligned_cols=91  Identities=29%  Similarity=0.508  Sum_probs=63.7

Q ss_pred             EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC---CC-CCCCH----------HHHHHHHHHHHhCC
Q 023375           17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---IL-SSFDD----------RLRHYATTQLSKSG   82 (283)
Q Consensus        17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~---~l-~~~~~----------~~~~~~~~~l~~~g   82 (283)
                      ++|||+|..|..+|..+.+...            +.+|+++....   .. +..+.          .+..... ...+.+
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~------------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   67 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLL------------AAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATG   67 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCC------------CCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhC
Confidence            5899999999999999876542            26777666542   11 11111          1111111 124678


Q ss_pred             CEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCch
Q 023375           83 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        83 V~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      +++..+ +|++++..  .+.+.+| ++.+|.+++++|.+|..
T Consensus        68 i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~  108 (415)
T COG0446          68 IDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRP  108 (415)
T ss_pred             CEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccC
Confidence            999998 89999864  6788888 89999999999999984

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.0049  Score=57.56  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=32.1

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.-+.|+|+|||+|.+|+++|.+|++.+              .+|+++.++
T Consensus       171 ~~~~GKrV~VIG~GaSA~di~~~l~~~g--------------a~vt~~qRs  207 (443)
T COG2072         171 EDLRGKRVLVIGAGASAVDIAPELAEVG--------------ASVTLSQRS  207 (443)
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhcC--------------CeeEEEecC
Confidence            3457799999999999999999999987              778888775

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.22  E-value=0.0055  Score=57.63  Aligned_cols=50  Identities=22%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEe--CCe---EEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSGVRLVRGIVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~~V~~v~--~~~---v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+++.||+++.+.++.+.  ++.   +.. +++.+.++.||+|||..+.
T Consensus       122 i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        122 IIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG  176 (466)
T ss_pred             HHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence            4444555556677877655554443  222   333 5667899999999998765

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.20  E-value=0.0044  Score=58.57  Aligned_cols=61  Identities=15%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHh----CC--CEEEeC-ceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCC
Q 023375           69 RLRHYATTQLSK----SG--VRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK  130 (283)
Q Consensus        69 ~~~~~~~~~l~~----~g--V~v~~~-~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~  130 (283)
                      .+...+.+.+++    .|  ++++++ +|++++.+     .|.+.+| ++.+|.||+|+|.....+.+.+++..
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~  284 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL  284 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC
Confidence            344555566667    67  788888 89988653     3555556 69999999999988877777777643

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.15  E-value=0.00073  Score=45.81  Aligned_cols=29  Identities=28%  Similarity=0.419  Sum_probs=25.8

Q ss_pred             EEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           19 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        19 VvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      |||||++|+.+|..|++.+              .+|+|+|+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTT--------------SEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCc
Confidence            8999999999999999876              8999999973

...

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.10  E-value=0.0067  Score=59.24  Aligned_cols=51  Identities=18%  Similarity=0.245  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhCC--CEEEeC-ceEEEeCC-------eEEEc------CC--cEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSG--VRLVRG-IVKDVDSQ-------KLILN------DG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~g--V~v~~~-~V~~v~~~-------~v~~~------~g--~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+.+.+  +++..+ ++++++.+       .++++      +|  +++.+|.||-|=|.+..
T Consensus       143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~  211 (634)
T PRK08294        143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR  211 (634)
T ss_pred             HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence            4455556666666  467777 78887532       24554      35  57999999999998653

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.10  E-value=0.01  Score=53.30  Aligned_cols=124  Identities=18%  Similarity=0.253  Sum_probs=76.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------CCC-------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------SFD-------------------   67 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------~~~-------------------   67 (283)
                      .-.++|||+||.|.-+|...++++              .+...||.. .+..      -.|                   
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlG--------------lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~  104 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLG--------------LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDF  104 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhc--------------ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHH
Confidence            357999999999999999999887              777777764 3210      000                   


Q ss_pred             -------------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEc--CC--cEEEeeEEEEcCCCC
Q 023375           68 -------------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLVWSTGVG  118 (283)
Q Consensus        68 -------------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~d~vi~a~G~~  118 (283)
                                               .++..-++..|++.+|.++.+.-+=++++.|...  ||  ..+.+..+|+|||..
T Consensus       105 ~~rGi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe  184 (506)
T KOG1335|consen  105 ASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE  184 (506)
T ss_pred             HhcCccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc
Confidence                                     1122223344556666666653222345555553  44  478999999999985


Q ss_pred             CchhhhccCCCCCCCCccccCCCcccCCCCC-EEEec
Q 023375          119 PSTLVKSLDLPKSPGGRIGIDEWLRVPSVQD-VFAVG  154 (283)
Q Consensus       119 ~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~-VfaiG  154 (283)
                      -.++.   |++.|++--+.-+..|.....|. +-++|
T Consensus       185 V~~~P---GI~IDekkIVSStgALsL~~vPk~~~viG  218 (506)
T KOG1335|consen  185 VTPFP---GITIDEKKIVSSTGALSLKEVPKKLTVIG  218 (506)
T ss_pred             cCCCC---CeEecCceEEecCCccchhhCcceEEEEc
Confidence            54443   66666655455555566555554 44444

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.06  E-value=0.00069  Score=61.12  Aligned_cols=103  Identities=24%  Similarity=0.390  Sum_probs=67.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHH------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA------------------   74 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~------------------   74 (283)
                      +.-..+|||||..+...+..+....            ...+|.+|....-+|.+.+.+++.+                  
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~d------------a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqws  244 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSND------------ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWS  244 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCC------------CCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccC
Confidence            3456899999988876666554332            2367777755433433322222211                  


Q ss_pred             -------------------HHHHHhCCCEEEeC-ceEEEeC--CeEEEcCCcEEEeeEEEEcCCCCCch--hhhccC
Q 023375           75 -------------------TTQLSKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPST--LVKSLD  127 (283)
Q Consensus        75 -------------------~~~l~~~gV~v~~~-~V~~v~~--~~v~~~~g~~i~~d~vi~a~G~~~~~--~~~~~~  127 (283)
                                         ......-||-+..+ +|..|+.  +.|++.||.+|.||.+++|||.+|..  .+++.+
T Consensus       245 GkeRsiffepd~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~  321 (659)
T KOG1346|consen  245 GKERSIFFEPDGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEAS  321 (659)
T ss_pred             CccceeEecCCcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcC
Confidence                               01112457999999 7888865  47999999999999999999999973  444443

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.05  E-value=0.002  Score=55.19  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=29.0

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||+|+.|+.+|..|+..+              .+|+++|++
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG--------------~~vtV~eKg   33 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAG--------------REVTVFEKG   33 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcC--------------cEEEEEEcC
Confidence            6999999999999999999887              899999986

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.94  E-value=0.031  Score=51.86  Aligned_cols=51  Identities=24%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             CccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHH----HHHHHHHHHHHHHHH
Q 023375          134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV----AERQGKYLFSLLNRI  189 (283)
Q Consensus       134 g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~----A~~qg~~~a~~i~~~  189 (283)
                      |.|.||...|| +.+++||+|.|+..    |=...-.+|..    +.--|..+|++|...
T Consensus       342 GGI~vD~~GrT-si~gLYAiGEvA~T----GlHGANRLASNSLLE~vV~g~~aA~~i~~~  396 (518)
T COG0029         342 GGIAVDANGRT-SIPGLYAIGEVACT----GLHGANRLASNSLLECLVFGKRAAEDIAGR  396 (518)
T ss_pred             ccEEECCCCcc-cCcccEEeeeeccc----ccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence            67889999998 99999999999963    21222334444    444455555555543

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.82  E-value=0.0027  Score=59.04  Aligned_cols=90  Identities=19%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC----CCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----NEILSSFDDRLRHYATTQLSKSGVRLV   86 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~----~~~l~~~~~~~~~~~~~~l~~~gV~v~   86 (283)
                      .-+.++|+|||.|.+|+++|.+++...              .+|.+...    ....+..            .-.++..+
T Consensus       183 ~f~~k~VlVIG~g~SG~DIs~d~~~~a--------------k~v~~~~~~~~~~~~~~~~------------~~~~~~~~  236 (448)
T KOG1399|consen  183 KFRDKVVLVVGCGNSGMDISLDLLRVA--------------KEVHLSVVSPKVHVEPPEI------------LGENLWQV  236 (448)
T ss_pred             cccCceEEEECCCccHHHHHHHHHHhc--------------cCcceeeecccccccccce------------eecceEEc
Confidence            346689999999999999999998776              45555432    1111100            00122223


Q ss_pred             eCceEEEeCCe-EEEcCCcEEEeeEEEEcCCCCCc-hhhhccC
Q 023375           87 RGIVKDVDSQK-LILNDGTEVPYGLLVWSTGVGPS-TLVKSLD  127 (283)
Q Consensus        87 ~~~V~~v~~~~-v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~  127 (283)
                      .. |..+++++ +.+.++....+|.+|+|||..-. ++++..+
T Consensus       237 ~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  237 PS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             cc-cccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            33 66677776 44456678899999999999865 5555443

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=96.72  E-value=0.025  Score=51.39  Aligned_cols=100  Identities=20%  Similarity=0.390  Sum_probs=67.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC------------------CCCC-------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI------------------LSSF-------   66 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~------------------l~~~-------   66 (283)
                      ..-.|+||||||+|+.+|..|.++..+.        ..+.+|.++|.. .+                  +|..       
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~--------~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl  146 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKA--------NKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPL  146 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhc--------CCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcc
Confidence            4468999999999999999998776321        123677777653 22                  1110       


Q ss_pred             -----------------------C------------HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----eEEE----
Q 023375           67 -----------------------D------------DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----KLIL----  100 (283)
Q Consensus        67 -----------------------~------------~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~----~v~~----  100 (283)
                                             .            ..+..++-+..++.||+++.+ ..++|-  ++    +|.+    
T Consensus       147 ~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G  226 (621)
T KOG2415|consen  147 NTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG  226 (621)
T ss_pred             cccccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc
Confidence                                   0            145566677778999999988 666652  22    2333    


Q ss_pred             -----------cCCcEEEeeEEEEcCCCCCc
Q 023375          101 -----------NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       101 -----------~~g~~i~~d~vi~a~G~~~~  120 (283)
                                 +.|-++.+...|+|-|.+.+
T Consensus       227 I~k~G~pKd~FerGme~hak~TifAEGc~G~  257 (621)
T KOG2415|consen  227 ISKDGAPKDTFERGMEFHAKVTIFAEGCHGS  257 (621)
T ss_pred             ccCCCCccccccccceecceeEEEeccccch
Confidence                       22447889999999998876

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.69  E-value=0.002  Score=60.88  Aligned_cols=37  Identities=27%  Similarity=0.528  Sum_probs=33.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI   62 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~   62 (283)
                      .+.++|+|||||.+|+.+|..|.+.+              .+|+++|+. ++
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G--------------~~V~VLEARdRv   50 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFG--------------FDVLVLEARDRV   50 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcC--------------CceEEEeccCCc
Confidence            45679999999999999999999998              899999985 54

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.66  E-value=0.002  Score=59.35  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      ++|+|||||++|+|+|..|++.+              .+|+|+|+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~G--------------l~V~LiE~   33 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRG--------------VPVELYEM   33 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEc
Confidence            58999999999999999999987              89999985

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.63  E-value=0.0096  Score=55.62  Aligned_cols=78  Identities=28%  Similarity=0.333  Sum_probs=52.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++++|+|+|.+|..+|..|++.+              .+|++++...-     +.+ ....+.|.+.|++++.+.+..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~~   63 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKEE-----DQL-KEALEELGELGIELVLGEYPE   63 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch-----HHH-HHHHHHHHhcCCEEEeCCcch
Confidence            4579999999999999999999988              99999987531     122 222344677788887653211


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                ...-.+|.||.++|..++
T Consensus        64 ----------~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106         64 ----------EFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             ----------hHhhcCCEEEECCCCCCC
Confidence                      001135666666666554

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.58  E-value=0.028  Score=52.35  Aligned_cols=52  Identities=17%  Similarity=0.105  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C----eEEEc--CCc--EEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q----KLILN--DGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~----~v~~~--~g~--~i~~d~vi~a~G~~~~  120 (283)
                      .+...+.+.+++.||+++.+ +|+++..  +    +|++.  +++  .+.++.||+|+|....
T Consensus       131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            45566677778889999998 7888753  2    24443  343  4789999999996443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.57  E-value=0.024  Score=50.41  Aligned_cols=111  Identities=26%  Similarity=0.358  Sum_probs=71.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC---------------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------------------------   64 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~---------------------------   64 (283)
                      +.-..+|||||.-|+..|...+.++              .++.++|.. .+..                           
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~G--------------Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~   84 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHG--------------AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAK   84 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcC--------------ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhh
Confidence            3567899999999999999999888              777777765 4310                           


Q ss_pred             ----------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCC--eEEEcCCcE--EEeeEEEEcCCCC
Q 023375           65 ----------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQ--KLILNDGTE--VPYGLLVWSTGVG  118 (283)
Q Consensus        65 ----------~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~--~v~~~~g~~--i~~d~vi~a~G~~  118 (283)
                                .++            ..+....++.|.+.+|+++.++-.=+.+.  .|...||++  +.+..+++|+|.+
T Consensus        85 ~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~  164 (478)
T KOG0405|consen   85 DYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGR  164 (478)
T ss_pred             hcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCc
Confidence                      000            01222334456677889988854445555  455567743  6789999999999


Q ss_pred             Cc-hhhhccCCCCCCCCccc
Q 023375          119 PS-TLVKSLDLPKSPGGRIG  137 (283)
Q Consensus       119 ~~-~~~~~~~l~~~~~g~i~  137 (283)
                      |. |-+....+..+.+|++.
T Consensus       165 p~~PnIpG~E~gidSDgff~  184 (478)
T KOG0405|consen  165 PIIPNIPGAELGIDSDGFFD  184 (478)
T ss_pred             cCCCCCCchhhccccccccc
Confidence            87 43332233334444443

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.56  E-value=0.026  Score=54.38  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=25.6

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||||.+|+-+|.++++.+              .+|+|+++.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G--------------~~V~lleK~   31 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAG--------------LNTAVISKV   31 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence            4899999999999999998876              667776653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.53  E-value=0.033  Score=54.19  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHh--hhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~--~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .-.|+|||||.+|+-+|.++++.  +              .+|+||++.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G--------------~~V~lieK~   45 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPD--------------LKVLIVEKA   45 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCC--------------CeEEEEECC
Confidence            35799999999999999999886  5              677777653

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.49  E-value=0.031  Score=54.05  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             HHHHHHHhCCCEEEeC-ceEEEe--CCe---EE---EcCCc--EEEeeEEEEcCCCCCc
Q 023375           73 YATTQLSKSGVRLVRG-IVKDVD--SQK---LI---LNDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        73 ~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~---~~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+++.||+++.+ .++++.  .+.   +.   ..+++  .+.++.||+|||....
T Consensus       140 ~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        140 ELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             HHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            3444455668888888 677753  232   22   23554  5889999999998653

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.48  E-value=0.031  Score=53.56  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=21.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhh
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      .-.|+|||+|.+|+-+|.++++.+
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G   39 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAG   39 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcC
Confidence            358999999999999999998765

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.43  E-value=0.014  Score=50.47  Aligned_cols=41  Identities=32%  Similarity=0.432  Sum_probs=32.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCC-CCccEEEEEeCCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV-KDYIHVTLIEANEI   62 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~-~~~~~V~li~~~~~   62 (283)
                      ..++|+|||||.+|+-.|..|++..         .. +....|+|||...+
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~---------sf~~~~~~ItifEs~~I   50 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHP---------SFKKGELDITIFESKEI   50 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCC---------ccCCCceeEEEEeeccc
Confidence            4489999999999999999998753         22 24588999987543

>TIGR00551 nadB L-aspartate oxidase

Probab=96.43  E-value=0.039  Score=52.23  Aligned_cols=52  Identities=12%  Similarity=0.130  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--Ce---EEEcC-C--cEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LILND-G--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~~---v~~~~-g--~~i~~d~vi~a~G~~~~  120 (283)
                      .+...+.+.+++ .||+++.+ .++++..  +.   +...+ +  ..+.++.||+|+|....
T Consensus       129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            344445555555 58999988 7887743  22   33332 3  36889999999998654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.37  E-value=0.014  Score=48.72  Aligned_cols=73  Identities=15%  Similarity=0.138  Sum_probs=49.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++|+|||||.+|..-+..|.+.+              .+|+++.+.     +.+++.    +..++.+|+++.+... 
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~l~----~l~~~~~i~~~~~~~~-   63 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESELT----LLAEQGGITWLARCFD-   63 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHHHH----HHHHcCCEEEEeCCCC-
Confidence            3579999999999999999999887              899999753     223332    2233345666544211 


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                        .       +.--.++.||.|||..
T Consensus        64 --~-------~dl~~~~lVi~at~d~   80 (205)
T TIGR01470        64 --A-------DILEGAFLVIAATDDE   80 (205)
T ss_pred             --H-------HHhCCcEEEEECCCCH
Confidence              0       1112389999999986

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08275 putative oxidoreductase; Provisional

Probab=96.36  E-value=0.051  Score=52.29  Aligned_cols=49  Identities=10%  Similarity=0.135  Sum_probs=32.7

Q ss_pred             HHHHHHHHhCCCEEEeC-ceEEEeC--C----eEEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375           72 HYATTQLSKSGVRLVRG-IVKDVDS--Q----KLIL---NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~-~V~~v~~--~----~v~~---~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+++.||+++.+ .++++..  +    ++..   .+|+  .+.++.||+|||....
T Consensus       141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        141 KVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            44445556678999888 7877732  2    2322   3554  4789999999998653

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.33  E-value=0.044  Score=51.07  Aligned_cols=51  Identities=14%  Similarity=0.242  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--C---eEE-EcCCc--EEEeeEEEEcCCCCC
Q 023375           69 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q---KLI-LNDGT--EVPYGLLVWSTGVGP  119 (283)
Q Consensus        69 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~---~v~-~~~g~--~i~~d~vi~a~G~~~  119 (283)
                      .+.+.+.+.+++ .||+++.+ +++++..  +   ++. ..+++  ++.++.||+|||...
T Consensus       129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence            344455555554 58999999 7888642  3   222 33454  588999999999744

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.33  E-value=0.016  Score=52.05  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=59.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C--------CCCCC--HHHHHHHHHHHHhCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I--------LSSFD--DRLRHYATTQLSKSGV   83 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~--------l~~~~--~~~~~~~~~~l~~~gV   83 (283)
                      .+|.|||+||+|+-.|..|.+..            +..+|+++|... .        .|..+  +...+.+.+.++....
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~------------~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rf   88 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRH------------PNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERF   88 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcC------------CCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccce
Confidence            49999999999999999997642            228999999862 2        23322  2344555666677777


Q ss_pred             EEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           84 RLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        84 ~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+..| .|    +..+.+.+ -+-.||.|++|.|....
T Consensus        89 sf~gNv~v----G~dvsl~e-L~~~ydavvLaYGa~~d  121 (468)
T KOG1800|consen   89 SFFGNVKV----GRDVSLKE-LTDNYDAVVLAYGADGD  121 (468)
T ss_pred             EEEeccee----cccccHHH-HhhcccEEEEEecCCCC
Confidence            77776 55    11222221 12349999999998776

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.32  E-value=0.018  Score=52.87  Aligned_cols=59  Identities=15%  Similarity=0.181  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCCCCchhhhc
Q 023375           67 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKS  125 (283)
Q Consensus        67 ~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~~~~~~~~  125 (283)
                      -+++.+.+.+.|++.|++++.+ +|.+++-  +   .|.+++|+++++|.||+|+|....+++..
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~  236 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEM  236 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHH
Confidence            3567788889999999999999 8987753  2   57788999999999999999998875543

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.31  E-value=0.024  Score=51.34  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=29.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||..|+..|..|++.+              .+|.++|..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G--------------~~v~VlE~~   34 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKG--------------IDVVVLESR   34 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcC--------------CeEEEEeec
Confidence            358999999999999999999987              888888875

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.30  E-value=0.037  Score=51.20  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=42.1

Q ss_pred             HHHHHHhC-CCEEEeC-ceEEEeCC-----eEEEc-----CCcEEEeeEEEEcCCCCCchhhhccCCC
Q 023375           74 ATTQLSKS-GVRLVRG-IVKDVDSQ-----KLILN-----DGTEVPYGLLVWSTGVGPSTLVKSLDLP  129 (283)
Q Consensus        74 ~~~~l~~~-gV~v~~~-~V~~v~~~-----~v~~~-----~g~~i~~d~vi~a~G~~~~~~~~~~~l~  129 (283)
                      +.+.+.+. |++++++ +|++++..     .|.+.     +..++.++.|++.+|..+-+++..++++
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~  254 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP  254 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence            33444455 9999999 89998754     35442     2357999999999999888899988875

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.28  E-value=0.014  Score=54.14  Aligned_cols=70  Identities=20%  Similarity=0.418  Sum_probs=47.1

Q ss_pred             ccEEEEEeCCC-C--CC----CC-----C--HHHHHH-HHHHHHhCCCEEEeC-ceEEEeCC--eEEEcC---CcEEE--
Q 023375           51 YIHVTLIEANE-I--LS----SF-----D--DRLRHY-ATTQLSKSGVRLVRG-IVKDVDSQ--KLILND---GTEVP--  107 (283)
Q Consensus        51 ~~~V~li~~~~-~--l~----~~-----~--~~~~~~-~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~~---g~~i~--  107 (283)
                      +.+|+||++.. +  .|    .+     .  .....+ ..+.+.+.||+++.+ +|++++.+  .+.+.+   ++++.  
T Consensus        12 ~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~   91 (427)
T TIGR03385        12 ESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEES   91 (427)
T ss_pred             CCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecC
Confidence            38999999863 2  12    11     1  111222 233458889999877 89999743  566643   45677  


Q ss_pred             eeEEEEcCCCCCc
Q 023375          108 YGLLVWSTGVGPS  120 (283)
Q Consensus       108 ~d~vi~a~G~~~~  120 (283)
                      ||.||+|||.+|+
T Consensus        92 yd~lIiATG~~p~  104 (427)
T TIGR03385        92 YDYLILSPGASPI  104 (427)
T ss_pred             CCEEEECCCCCCC
Confidence            9999999999887

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=96.25  E-value=0.0048  Score=57.36  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|||||.+|+-+|..|++.+.            +.+|+|+|+.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~------------~~~V~vlEa~   34 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGP------------DADITLLEAS   34 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCC------------CCCEEEEEcC
Confidence            479999999999999999998642            1689999986

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.23  E-value=0.0059  Score=54.82  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ....|+|||+|.+|..+|..|++.+              .+|++||+.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdG--------------RrVhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDG--------------RRVHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCC--------------cEEEEEecc
Confidence            4457999999999999999999877              899999996

>PTZ00367 squalene epoxidase; Provisional

Probab=96.21  E-value=0.0077  Score=57.92  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+++|+..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G--------------~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQG--------------RKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcC--------------CEEEEEcccc
Confidence            458999999999999999999877              8999999863

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.18  E-value=0.0045  Score=53.60  Aligned_cols=40  Identities=25%  Similarity=0.164  Sum_probs=34.0

Q ss_pred             HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++-+..+|+|||.|-.|.++|..|++.+-             .+++|++..
T Consensus        24 ~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-------------g~itLiD~D   63 (268)
T PRK15116         24 ALQLFADAHICVVGIGGVGSWAAEALARTGI-------------GAITLIDMD   63 (268)
T ss_pred             HHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-------------CEEEEEeCC
Confidence            3455677899999999999999999998873             689999876

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.0067  Score=56.42  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=31.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI   62 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~   62 (283)
                      +||+|+|||.+|+.+|.+|++.+              .+|||+|++..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g--------------~~vt~~ea~~~   34 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAG--------------YDVTLYEARDR   34 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCC--------------CceEEEeccCc
Confidence            58999999999999999999998              99999999743

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.03  E-value=0.014  Score=55.36  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL   63 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l   63 (283)
                      ..|+|||||.+|+-+|.+|+.++              .+|.|+|+..+.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG--------------~~V~LlEk~d~~   41 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRG--------------LKVLLCEKDDLA   41 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCCCC
Confidence            47999999999999999999887              899999997543

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.00  E-value=0.0084  Score=55.23  Aligned_cols=31  Identities=32%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||||.+|+.+|.+|++.+              .+|+|+|+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g--------------~~V~vle~~   32 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAG--------------HEVTVIDRQ   32 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            7999999999999999999876              899999986

>PLN02268 probable polyamine oxidase

Probab=95.99  E-value=0.0088  Score=55.56  Aligned_cols=32  Identities=34%  Similarity=0.585  Sum_probs=28.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||.+|+.+|..|.+.+              .+|+|+|+.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g--------------~~v~vlEa~   32 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDAS--------------FKVTLLESR   32 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence            37999999999999999998866              788888874

>PRK07233 hypothetical protein; Provisional

Probab=95.98  E-value=0.0077  Score=55.62  Aligned_cols=31  Identities=32%  Similarity=0.437  Sum_probs=28.5

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||||.+|+.+|..|++.+              .+|+|+|+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G--------------~~v~vlE~~   31 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRG--------------HEVTVFEAD   31 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEeC
Confidence            6899999999999999999877              889999886

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=95.97  E-value=0.0098  Score=54.08  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=30.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      ...+|+|||||.+|+.+|.+|++.+              .+|+++|+..
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G--------------~~V~vie~~~   37 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERG--------------ADVTVLEAGE   37 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcC--------------CEEEEEecCc
Confidence            3468999999999999999999987              7999998753

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.94  E-value=0.028  Score=44.02  Aligned_cols=77  Identities=16%  Similarity=0.305  Sum_probs=50.6

Q ss_pred             EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCc-eEEEeC
Q 023375           17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS   95 (283)
Q Consensus        17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~-V~~v~~   95 (283)
                      |+|+|+|..|.-+|..|++.+              .+|+++.+..            ..+.+++.|+.+.... -..+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r~~------------~~~~~~~~g~~~~~~~~~~~~~~   54 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSRSP------------RLEAIKEQGLTITGPDGDETVQP   54 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTT--------------CEEEEEESHH------------HHHHHHHHCEEEEETTEEEEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCC--------------CceEEEEccc------------cHHhhhheeEEEEecccceeccc
Confidence            689999999999999999866              8999996521            1234778898887664 111111


Q ss_pred             CeEEEcCC--cEEEeeEEEEcCCCCCc
Q 023375           96 QKLILNDG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        96 ~~v~~~~g--~~i~~d~vi~a~G~~~~  120 (283)
                      . ....+.  ..-++|.||+|+-....
T Consensus        55 ~-~~~~~~~~~~~~~D~viv~vKa~~~   80 (151)
T PF02558_consen   55 P-IVISAPSADAGPYDLVIVAVKAYQL   80 (151)
T ss_dssp             E-EEESSHGHHHSTESEEEE-SSGGGH
T ss_pred             c-cccCcchhccCCCcEEEEEecccch
Confidence            1 112111  23569999999765443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=95.90  E-value=0.0089  Score=55.45  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=31.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI   62 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~   62 (283)
                      ++|+|||||.+|+.+|.+|++.++            ..+|+|+|++ ++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p------------~~~i~lfE~~~r~   37 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGP------------DVEVTLFEADDRV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCC------------CCcEEEEecCCCC
Confidence            479999999999999999998764            3899999996 44

>PRK07208 hypothetical protein; Provisional

Probab=95.89  E-value=0.0096  Score=56.03  Aligned_cols=33  Identities=33%  Similarity=0.460  Sum_probs=29.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|||||.+|+.+|..|++.+              .+|+++|+.
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g--------------~~v~v~E~~   36 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRG--------------YPVTVLEAD   36 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence            468999999999999999999876              788888875

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=95.88  E-value=0.13  Score=45.82  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .-.|+|||||-+|...|.-|.++..+          .+.+|.++|++
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd----------~gl~VvVVErd  122 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARD----------EGLNVVVVERD  122 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhc----------CCceEEEEecc
Confidence            45799999999999999999987632          34788888775

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.81  E-value=0.37  Score=44.81  Aligned_cols=44  Identities=16%  Similarity=0.055  Sum_probs=34.4

Q ss_pred             CCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            5 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         5 ~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .......+..-+|+|+|+|.+-++....|.+.+.+            .+||++.+.
T Consensus       187 ~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~------------g~It~iSRr  230 (474)
T COG4529         187 ANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHK------------GPITAISRR  230 (474)
T ss_pred             CcccccccCCCceEEecCCchhHHHHHHHhccCCc------------cceEEEecc
Confidence            34444556666799999999999999999986643            788888774

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=95.79  E-value=0.011  Score=55.26  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=28.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|||||.+|+.+|..|++..+          +.+.+|+|+|+.
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~----------~~g~~v~vlE~~   38 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIP----------ELPVELTLVEAS   38 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC----------CCCCcEEEEEcC
Confidence            689999999999999999998620          001789999876

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.78  E-value=0.011  Score=56.19  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=30.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI   62 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~   62 (283)
                      ..|+|||||.+|+.+|.+|+.++              .+|+|||++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG--------------l~V~LvEk~d~   40 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRG--------------LSVLLCEQDDL   40 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCC
Confidence            57999999999999999999987              89999998643

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.17  Score=44.93  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=28.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      -.-..+|||||..|+.+|.+.+.++              ++|.+++-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G--------------~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLG--------------AKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcC--------------CcEEEEee
Confidence            3457899999999999999999998              77777764

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=95.70  E-value=0.013  Score=54.82  Aligned_cols=40  Identities=25%  Similarity=0.294  Sum_probs=30.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI   62 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~   62 (283)
                      ++|+|||||.+|+.+|..|++.++..        +.+.+|+|+|+. ++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~--------~~~~~V~vlEa~~r~   42 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDY--------NIDLNLILVEKEEYL   42 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhcc--------CCCccEEEEecCCCc
Confidence            57999999999999999998753100        012689999986 44

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.66  E-value=0.013  Score=55.33  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=31.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      ..+|||||||..|+-+|..|++.+              .+|+++|++.
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G--------------~~V~VlE~~~   36 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAG--------------LKVTVLEKND   36 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCC--------------CEEEEEEecC
Confidence            468999999999999999999988              9999999763

>PLN02487 zeta-carotene desaturase

Probab=95.65  E-value=0.014  Score=56.21  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|||||++|+.+|..|++.+              .+|+|+|+.
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g--------------~~v~i~E~~  107 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQG--------------HEVDIYESR  107 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--------------CeeEEEecC
Confidence            4469999999999999999999877              899999986

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=95.61  E-value=0.019  Score=56.04  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=31.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI   62 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~   62 (283)
                      ..|+|||||.+|+.+|.+|+..+              .+|+|||++++
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rG--------------l~V~LvE~~d~  105 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRG--------------LRVGLVEREDF  105 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCC--------------CEEEEEecccc
Confidence            57999999999999999999987              89999999754

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=95.50  E-value=0.08  Score=46.60  Aligned_cols=57  Identities=12%  Similarity=0.165  Sum_probs=40.2

Q ss_pred             HHHHhCCCEEEeC-ceEEEeCC-------eEEEc--CCcEEEeeEEEEcCCCCCchhhhccCCCCCC
Q 023375           76 TQLSKSGVRLVRG-IVKDVDSQ-------KLILN--DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP  132 (283)
Q Consensus        76 ~~l~~~gV~v~~~-~V~~v~~~-------~v~~~--~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~  132 (283)
                      +.++..|-++.++ +++.+..+       .++..  .++++.+..++-|+|....-..+.++++.++
T Consensus       204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dP  270 (453)
T KOG2665|consen  204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDP  270 (453)
T ss_pred             HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCC
Confidence            3366677777777 77776543       13332  3678999999999999887666667777665

>PLN02576 protoporphyrinogen oxidase

Probab=95.50  E-value=0.016  Score=54.83  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=28.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||.+|+.+|..|++. +              .+|+|+|+.
T Consensus        13 ~~v~IIGaGisGL~aA~~L~~~~g--------------~~v~vlEa~   45 (496)
T PLN02576         13 KDVAVVGAGVSGLAAAYALASKHG--------------VNVLVTEAR   45 (496)
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcC--------------CCEEEEecC
Confidence            4799999999999999999987 5              788888876

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.49  E-value=0.059  Score=48.54  Aligned_cols=93  Identities=16%  Similarity=0.253  Sum_probs=52.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CCCC--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LSSF--------------------   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~~~--------------------   66 (283)
                      ..++.||.||.++.+|..|.+...             .++..+|+. .+       ++..                    
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~~-------------~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~   69 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHGD-------------LKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPF   69 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH----------------EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTT
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcCC-------------CCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcc
Confidence            468999999999999999998762             778888854 22       1100                    


Q ss_pred             ------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--------eEEEc----CCcEEEee
Q 023375           67 ------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--------KLILN----DGTEVPYG  109 (283)
Q Consensus        67 ------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--------~v~~~----~g~~i~~d  109 (283)
                                              -.+..+|+.-..++.+-.+..+ +|++|+..        .|.+.    +++++.++
T Consensus        70 sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar  149 (341)
T PF13434_consen   70 SFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR  149 (341)
T ss_dssp             SHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES
T ss_pred             cHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC
Confidence                                    0123344433344555447777 78888542        34442    34689999


Q ss_pred             EEEEcCCCCCc
Q 023375          110 LLVWSTGVGPS  120 (283)
Q Consensus       110 ~vi~a~G~~~~  120 (283)
                      .||+++|..|.
T Consensus       150 ~vVla~G~~P~  160 (341)
T PF13434_consen  150 NVVLATGGQPR  160 (341)
T ss_dssp             EEEE----EE-
T ss_pred             eEEECcCCCCC
Confidence            99999998776

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.38  E-value=0.2  Score=48.58  Aligned_cols=51  Identities=18%  Similarity=0.186  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEe--C----Ce---EEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVD--S----QK---LIL---NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~--~----~~---v~~---~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +...+.+.+++.||+++.+ .++++.  +    +.   +..   .+++  .+.++.||+|||....
T Consensus       142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  207 (583)
T PRK08205        142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence            3444555566778999888 777763  2    22   322   3454  5789999999998764

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.22  E-value=0.022  Score=53.80  Aligned_cols=32  Identities=31%  Similarity=0.418  Sum_probs=29.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|||||..|+.+|..|++.+              .+|+++|+.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G--------------~~v~vlE~~   33 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRG--------------YRVTLLEQH   33 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecC
Confidence            57999999999999999999887              899999987

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.22  E-value=0.059  Score=50.46  Aligned_cols=79  Identities=18%  Similarity=0.160  Sum_probs=52.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD   94 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~   94 (283)
                      +|+|||.|.+|+.+|..|.+.+              .+|++++..... .     .....+.|++.|++++.+ ... .+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G--------------~~V~~~D~~~~~-~-----~~~~~~~l~~~gi~~~~g~~~~-~~   60 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQG--------------WEVVVSDRNDSP-E-----LLERQQELEQEGITVKLGKPLE-LE   60 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCC--------------CEEEEECCCCch-h-----hHHHHHHHHHcCCEEEECCccc-hh
Confidence            6999999999999999998887              899999876321 1     112234577789999876 221 10


Q ss_pred             CCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           95 SQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        95 ~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                        .+..   ..-.+|.||.++|..+.
T Consensus        61 --~~~~---~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705         61 --SFQP---WLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             --hhhH---HhhcCCEEEECCCCCCC
Confidence              0000   01236788888888765

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.21  E-value=0.45  Score=43.04  Aligned_cols=78  Identities=14%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCccc---CCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHH
Q 023375          104 TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV---PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK  180 (283)
Q Consensus       104 ~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~---~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~  180 (283)
                      ++++|++++.+.|.+..++....++.  .+..+.-|...++   .-.|++|+.|=|.+-|        ......++++|.
T Consensus       327 e~~p~~l~i~sIGYks~pv~~gipFd--~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP--------~GvIattm~dAf  396 (468)
T KOG1800|consen  327 ETLPCGLLIRSIGYKSVPVDSGIPFD--DKKGVVPNVNGRVLVSGCSPGLYASGWVKHGP--------TGVIATTMQDAF  396 (468)
T ss_pred             EeeccceeEeeeeecccccCCCCCcc--cccCcccCCCceEEeeccCCceEEEeeeccCC--------cceeeehhhhHH
Confidence            57999999999999887665544432  2222222222222   1359999999887621        233445667777


Q ss_pred             HHHHHHHHHhh
Q 023375          181 YLFSLLNRIGK  191 (283)
Q Consensus       181 ~~a~~i~~~~~  191 (283)
                      .+|+.|...++
T Consensus       397 ~v~d~I~qD~~  407 (468)
T KOG1800|consen  397 EVADTIVQDLK  407 (468)
T ss_pred             HHHHHHHHHHH
Confidence            77777777665

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=95.20  E-value=0.15  Score=47.37  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeC----Ce---EEEc-CCcEEEeeEEEEcCCCCC
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDS----QK---LILN-DGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~----~~---v~~~-~g~~i~~d~vi~a~G~~~  119 (283)
                      +.+.+.+.+++.|++++++ +|+++..    +.   |... ++.++.++.||+|+|...
T Consensus       125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~  183 (432)
T TIGR02485       125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG  183 (432)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence            3445555667789999988 7888642    22   2333 335789999999999543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=95.18  E-value=0.033  Score=51.40  Aligned_cols=43  Identities=26%  Similarity=0.337  Sum_probs=34.4

Q ss_pred             CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375            7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI   62 (283)
Q Consensus         7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~   62 (283)
                      +-.+.++..+|||||+|.+|+.+|..|.+.+-             .+++|+|+. ++
T Consensus        14 ~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf-------------~~~~IlEa~dRI   57 (498)
T KOG0685|consen   14 SGLKARGNAKIVIIGAGIAGLAAATRLLENGF-------------IDVLILEASDRI   57 (498)
T ss_pred             hhhhccCCceEEEECCchHHHHHHHHHHHhCC-------------ceEEEEEecccc
Confidence            34455666799999999999999999996652             788888876 55

>TIGR02734 crtI_fam phytoene desaturase

Probab=95.18  E-value=0.02  Score=54.25  Aligned_cols=30  Identities=33%  Similarity=0.468  Sum_probs=27.7

Q ss_pred             EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      |+|||||..|+.+|..|++.+              .+|+|+|++
T Consensus         1 vvVIGaG~~GL~aA~~La~~G--------------~~V~VlE~~   30 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAG--------------IPVTVVEQR   30 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence            689999999999999999887              899999986

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=95.17  E-value=0.021  Score=53.37  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||||++|+.+|.+|.+.+              .+|+|+|+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G--------------~~v~vlE~~   31 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAG--------------HTPIVLEAR   31 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence            5899999999999999999877              889999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=95.16  E-value=0.027  Score=51.35  Aligned_cols=38  Identities=29%  Similarity=0.369  Sum_probs=31.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI   62 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~   62 (283)
                      -.++|+|||||.+|+.+|..|+++..            +..|+|+|+. ++
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p------------~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGP------------DVTITLFEASPRV   48 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCC------------CceEEEEecCCcc
Confidence            34799999999999999999998763            3788899886 54

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.11  E-value=0.089  Score=46.62  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|+|+|..|.-+|+.|++.+              .+|+++.++
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G--------------~~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAG--------------LPVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEec
Confidence            358999999999999999999876              899999774

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.06  E-value=0.026  Score=41.44  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=29.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +.++|+|||||..|..-+..|.+.+              .+|+++.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~g--------------A~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAG--------------AKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCT--------------BEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEECCch
Confidence            4579999999999999999998877              9999997643

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=95.05  E-value=0.03  Score=51.10  Aligned_cols=32  Identities=22%  Similarity=0.492  Sum_probs=28.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+++|||||++|+.+|..|++.+              .+|+++|+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G--------------~~V~viEk~   33 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLN--------------KRVLVVEKR   33 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecC
Confidence            36999999999999999999765              899999986

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.03  E-value=0.056  Score=47.77  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|-|||||.+|.|+|..+++.+              ++|.|.|..
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~G--------------v~V~L~EMR   35 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRG--------------VPVILYEMR   35 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcC--------------CcEEEEEcc
Confidence            57899999999999999999988              999999864

>PLN02529 lysine-specific histone demethylase 1

Probab=95.00  E-value=0.032  Score=55.16  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=30.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+.++|+|||||++|+.+|..|+..+              .+|+++|+.
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g--------------~~v~v~E~~  192 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFG--------------FKVVVLEGR  192 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcC--------------CcEEEEecC
Confidence            34578999999999999999999877              778888774

>PRK07121 hypothetical protein; Validated

Probab=95.00  E-value=0.029  Score=53.12  Aligned_cols=34  Identities=26%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..-.|||||+|.+|+-+|.++++.+              .+|+|+|+.
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G--------------~~VillEK~   52 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAG--------------ARVLVLERA   52 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            3468999999999999999999877              899999875

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.99  E-value=0.042  Score=52.88  Aligned_cols=92  Identities=13%  Similarity=0.069  Sum_probs=63.3

Q ss_pred             cCeEEEEccCcHHHHHHHH-------HHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEE
Q 023375           14 LLHCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL   85 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~-------L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v   85 (283)
                      ++..+++|+|..++|.+..       +.+++              .+|++++.. ..+..++..+...+.+.+++.||++
T Consensus       160 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v  225 (557)
T PRK07843        160 PLNMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPV  225 (557)
T ss_pred             cccccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEE
Confidence            3457899999999998864       34444              455555443 4445567788888889999999999


Q ss_pred             EeC-ceEEEeCC-----eEEEc-CCc--EEEee-EEEEcCCCCC
Q 023375           86 VRG-IVKDVDSQ-----KLILN-DGT--EVPYG-LLVWSTGVGP  119 (283)
Q Consensus        86 ~~~-~V~~v~~~-----~v~~~-~g~--~i~~d-~vi~a~G~~~  119 (283)
                      +++ +++++..+     +|+.. +++  .+.++ .||+|+|...
T Consensus       226 ~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~  269 (557)
T PRK07843        226 LLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFE  269 (557)
T ss_pred             EeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence            999 78887543     34343 443  47785 6888776543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=94.91  E-value=0.022  Score=50.59  Aligned_cols=34  Identities=32%  Similarity=0.374  Sum_probs=30.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI   62 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~   62 (283)
                      ..+|+|||+|.+|+.+|..|+..               .+|||+|++ ++
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r---------------hdVTLfEA~~rl   42 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR---------------HDVTLFEADRRL   42 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc---------------cceEEEeccccc
Confidence            46899999999999999999875               799999997 44

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.75  E-value=0.028  Score=45.81  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|.|||+|..|..+|..++..+              .+|++++.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G--------------~~V~l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAG--------------YEVTLYDRS   31 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTT--------------SEEEEE-SS
T ss_pred             CEEEEcCCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence            6899999999999999999987              999999886

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.75  E-value=0.031  Score=48.93  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=27.4

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI   62 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~   62 (283)
                      .++|||+|+.|.-+|..|++.+             ..+|.|+|++..
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~-------------~~~VlvlEaG~~   35 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAG-------------NKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTST-------------TS-EEEEESSBS
T ss_pred             CEEEECcCHHHHHHHHHHhhCC-------------CCcEEEEEcccc
Confidence            4899999999999999999764             179999999843

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.74  E-value=0.05  Score=43.28  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEe
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE   58 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~   58 (283)
                      +.++|+|||||..|...|..|.+.+              .+|++|.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~g--------------a~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTG--------------AFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEc
Confidence            4579999999999999999999876              8999994

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.64  E-value=0.06  Score=41.49  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|+|.|..|.++|..|+..+-             .+++|++..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv-------------~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGV-------------GKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTT-------------SEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCC-------------CceeecCCc
Confidence            4699999999999999999999873             689999885

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=94.62  E-value=0.038  Score=52.22  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=27.4

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      .|+|||||.+|+.+|.+|++..+            +.+|+++|+
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~------------g~~V~VlEk   33 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEP------------NWSITLIER   33 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCC------------CCeEEEEEc
Confidence            58999999999999999998621            278999987

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=94.59  E-value=0.041  Score=53.15  Aligned_cols=94  Identities=11%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             ccCeEEEEccCc--HHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC--------------CCHHHHHHHH
Q 023375           13 RLLHCVVVGGGP--TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS--------------FDDRLRHYAT   75 (283)
Q Consensus        13 ~~~~vvVvGgG~--~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~--------------~~~~~~~~~~   75 (283)
                      ...++.|+|+|+  ++.|++..+...+              .+++++... .+++.              ....+...+.
T Consensus       156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~  221 (574)
T PRK12842        156 PLKTITFIGMMFNSSNADLKHFFNATR--------------SLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLA  221 (574)
T ss_pred             CcccccccceecccchHHHHHHHhhcc--------------chhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHH
Confidence            345788999988  8889888887654              334433322 22211              2345677778


Q ss_pred             HHHHhCCCEEEeC-ceEEEeC--C---eEEEcC--Cc-EEEee-EEEEcCCCCCc
Q 023375           76 TQLSKSGVRLVRG-IVKDVDS--Q---KLILND--GT-EVPYG-LLVWSTGVGPS  120 (283)
Q Consensus        76 ~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~--g~-~i~~d-~vi~a~G~~~~  120 (283)
                      +.+++.||+++.+ .|+++..  +   +|...+  ++ ++.++ .||+|+|..++
T Consensus       222 ~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        222 KSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             HHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            8888999999999 7888753  3   344433  33 46785 79999998773

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.58  E-value=0.28  Score=44.80  Aligned_cols=64  Identities=13%  Similarity=0.136  Sum_probs=48.9

Q ss_pred             EeCC-CCCCC--CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEEcCC-cEEEeeEEEEcCCCCCc
Q 023375           57 IEAN-EILSS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILNDG-TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        57 i~~~-~~l~~--~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~~g-~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+ ++.|.  -..++.+.+.+.+++.||+++++ +|++|+++  .+.+.++ +++.+|.||+|+|..+.
T Consensus        72 ~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~  142 (376)
T TIGR03862        72 VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGASW  142 (376)
T ss_pred             ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCccc
Confidence            3444 77774  34578888999999999999999 89999554  3554433 46999999999998764

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=94.58  E-value=0.036  Score=52.50  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=28.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||||.+|+.+|.+|++..+            +.+|+|+|+.
T Consensus         6 ~DVvIIGgGIiG~slA~~L~~~~~------------g~~V~VlEk~   39 (494)
T PRK05257          6 TDVVLIGGGIMSATLGTLLKELEP------------EWSITMFERL   39 (494)
T ss_pred             ceEEEECcHHHHHHHHHHHHHhCC------------CCeEEEEEcC
Confidence            479999999999999999997632            2789999874

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=94.53  E-value=0.046  Score=50.42  Aligned_cols=31  Identities=32%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||+|.+|+-+|.++++.+              .+|+|||+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G--------------~~V~lvek~   31 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAG--------------AKVLLVEKG   31 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTT--------------T-EEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHhhhc--------------CeEEEEEee
Confidence            4899999999999999999988              899999886

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=94.46  E-value=0.045  Score=51.37  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|||||+|.+|+.+|.++++.+              .+|+|||+.
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G--------------~~V~vlEk~   36 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAG--------------ASVLLLEAA   36 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            47999999999999999999887              888888864

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=94.46  E-value=0.04  Score=51.95  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||||.+|+.+|..|++.+              .+|+++|+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G--------------~~v~v~E~~   31 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAG--------------HEVDIYESR   31 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEec
Confidence            5899999999999999999876              889999986

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.35  E-value=0.22  Score=44.24  Aligned_cols=78  Identities=10%  Similarity=0.149  Sum_probs=49.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEe--CceEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR--GIVKD   92 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~--~~V~~   92 (283)
                      ++|+|||+|..|.-+|..|++.+              .+|+++.++.      .       +.+.+.|+.+..  +.. .
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g--------------~~V~~~~r~~------~-------~~~~~~g~~~~~~~~~~-~   57 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAG--------------FDVHFLLRSD------Y-------EAVRENGLQVDSVHGDF-H   57 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEEeCC------H-------HHHHhCCeEEEeCCCCe-e
Confidence            68999999999999999999876              8999997642      1       225566776643  111 1


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+-.+.......-++|.||+|+-....
T Consensus        58 ~~~~~~~~~~~~~~~~D~vilavK~~~~   85 (313)
T PRK06249         58 LPPVQAYRSAEDMPPCDWVLVGLKTTAN   85 (313)
T ss_pred             ecCceEEcchhhcCCCCEEEEEecCCCh
Confidence            1111111110111258999999876543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.33  E-value=0.077  Score=48.07  Aligned_cols=58  Identities=17%  Similarity=0.334  Sum_probs=42.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--C-------CCCCCCHHHHHHHHHHHHhCCCEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-------ILSSFDDRLRHYATTQLSKSGVRL   85 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~-------~l~~~~~~~~~~~~~~l~~~gV~v   85 (283)
                      ++|.|||.|+.|+-.|..|++.+              ++|+.++-.  +       ..|-+.+.+.+.+++...+....+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~G--------------HeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f   66 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELG--------------HEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF   66 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcC--------------CeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE
Confidence            47999999999999999999998              899999764  2       246666776666555444433433


Q ss_pred             E
Q 023375           86 V   86 (283)
Q Consensus        86 ~   86 (283)
                      -
T Consensus        67 T   67 (414)
T COG1004          67 T   67 (414)
T ss_pred             E
Confidence            3

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.32  E-value=0.13  Score=45.72  Aligned_cols=78  Identities=18%  Similarity=0.241  Sum_probs=51.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV   93 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v   93 (283)
                      .+|.|+|+|..|.-+|..|++.+              .+|+++.+.+           . .+.+++.|+.+... .  ..
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g--------------~~V~~~~R~~-----------~-~~~l~~~GL~i~~~~~--~~   52 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG--------------HDVTLLVRSR-----------R-LEALKKKGLRIEDEGG--NF   52 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC--------------CeEEEEecHH-----------H-HHHHHhCCeEEecCCC--cc
Confidence            47999999999999999999886              7888885532           1 35577778888765 3  11


Q ss_pred             eCCeEEEcC-CcEEEeeEEEEcCCCCCc
Q 023375           94 DSQKLILND-GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        94 ~~~~v~~~~-g~~i~~d~vi~a~G~~~~  120 (283)
                      ........+ ....++|.||+++=....
T Consensus        53 ~~~~~~~~~~~~~~~~Dlviv~vKa~q~   80 (307)
T COG1893          53 TTPVVAATDAEALGPADLVIVTVKAYQL   80 (307)
T ss_pred             ccccccccChhhcCCCCEEEEEeccccH
Confidence            111111111 123478999998865443

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.31  E-value=0.17  Score=47.16  Aligned_cols=76  Identities=17%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD   92 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~   92 (283)
                      .++++|+|+|.+|..+|..|++.+              .+|++.+.... +.      ....+.|++.|+++..+ ....
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G--------------~~V~~~d~~~~-~~------~~~~~~l~~~g~~~~~~~~~~~   63 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLG--------------ANVTVNDGKPF-SE------NPEAQELLEEGIKVICGSHPLE   63 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCC--------------CEEEEEcCCCc-cc------hhHHHHHHhcCCEEEeCCCCHH
Confidence            468999999999999999999887              89999876421 10      11224467778888754 2211


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.      .+    .+|.||.++|..+.
T Consensus        64 ~~------~~----~~d~vV~s~gi~~~   81 (447)
T PRK02472         64 LL------DE----DFDLMVKNPGIPYT   81 (447)
T ss_pred             Hh------cC----cCCEEEECCCCCCC
Confidence            10      00    36777777777654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=94.25  E-value=0.063  Score=53.57  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ....+|+|||||++|+.+|..|++.+              .+|+++|+.
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g--------------~~v~v~E~~  270 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMG--------------FKVVVLEGR  270 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence            34578999999999999999999876              778888774

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.24  E-value=0.092  Score=42.97  Aligned_cols=75  Identities=16%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C--------CCCCCCHHHHHHHHHHHHhCCCEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E--------ILSSFDDRLRHYATTQLSKSGVRL   85 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~--------~l~~~~~~~~~~~~~~l~~~gV~v   85 (283)
                      ++|.|||.|+.|+-+|..|++.+              .+|+.++.+ +        .+|-..+.+.+.+.+.++..+..+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G--------------~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~   66 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG--------------HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA   66 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT--------------SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCC--------------CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh
Confidence            48999999999999999999988              999999875 2        234455666666666665544444


Q ss_pred             EeCceEEEeCCeEEEcCCcE--EEeeEEEEcCCC
Q 023375           86 VRGIVKDVDSQKLILNDGTE--VPYGLLVWSTGV  117 (283)
Q Consensus        86 ~~~~V~~v~~~~v~~~~g~~--i~~d~vi~a~G~  117 (283)
                      ..+              .+.  -.+|.+++|.+.
T Consensus        67 t~~--------------~~~ai~~adv~~I~VpT   86 (185)
T PF03721_consen   67 TTD--------------IEEAIKDADVVFICVPT   86 (185)
T ss_dssp             ESE--------------HHHHHHH-SEEEE----
T ss_pred             hhh--------------hhhhhhccceEEEecCC
Confidence            332              111  358899998875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02730 carot_isom carotene isomerase

Probab=94.04  E-value=0.059  Score=51.02  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=27.8

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||+|..|+.+|..|++.+              .+|+|+|++
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G--------------~~V~vlE~~   32 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKG--------------AKVLVLERY   32 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCC--------------CcEEEEECC
Confidence            5899999999999999999987              788888875

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=93.96  E-value=0.44  Score=46.08  Aligned_cols=55  Identities=13%  Similarity=0.105  Sum_probs=40.0

Q ss_pred             HHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           72 HYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      ..+....++.|+.++.+ .|++|.-.     +|.+.-| .|++..+|-|+|+.+..+-...+
T Consensus       191 ~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~g  251 (856)
T KOG2844|consen  191 QALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAG  251 (856)
T ss_pred             HHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcC
Confidence            33444456889999998 89887432     5777666 59999999999998875544444

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=93.94  E-value=0.43  Score=42.29  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=52.8

Q ss_pred             HHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEE
Q 023375           40 DVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLV  112 (283)
Q Consensus        40 ~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi  112 (283)
                      ++.+.+|.++.+..--++.+. ..+  -+..+...+.+.+.+.|++++.+ +|+++..  +.   |.+.+| ++.+|.||
T Consensus       110 e~~~~~p~l~~~~~~g~~~~~~g~v--~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV  186 (337)
T TIGR02352       110 ALRRLEPYLSGGIRGAVFYPDDAHV--DPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVV  186 (337)
T ss_pred             HHHHhCCCCCcccceEEEcCCCceE--ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEE
Confidence            344555655433333333332 111  24677888888899999999998 8988864  33   344455 79999999


Q ss_pred             EcCCCCCchh
Q 023375          113 WSTGVGPSTL  122 (283)
Q Consensus       113 ~a~G~~~~~~  122 (283)
                      +|+|.....+
T Consensus       187 ~a~G~~~~~l  196 (337)
T TIGR02352       187 LAAGAWAGEL  196 (337)
T ss_pred             EcCChhhhhc
Confidence            9999766544

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=93.93  E-value=0.046  Score=51.71  Aligned_cols=36  Identities=25%  Similarity=0.509  Sum_probs=32.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI   62 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~   62 (283)
                      ....|+|||||.+|+-+|..++..+              .+|.|+|++++
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RG--------------l~v~LvE~~D~   46 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRG--------------LKVALVEKGDL   46 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCC--------------CeEEEEecCcc
Confidence            4468999999999999999999988              99999998765

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.88  E-value=0.095  Score=43.52  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++|+|||||..|...|..|.+.+              .+|+++++     .+.+++.    +...+..+.+.....  
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~-----~~~~~l~----~l~~~~~i~~~~~~~--   63 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISP-----ELTENLV----KLVEEGKIRWKQKEF--   63 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcC-----CCCHHHH----HHHhCCCEEEEecCC--
Confidence            4579999999999999999999876              89999964     2333333    223333344422111  


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                              ....--.+|.||.||+...
T Consensus        64 --------~~~~l~~adlViaaT~d~e   82 (202)
T PRK06718         64 --------EPSDIVDAFLVIAATNDPR   82 (202)
T ss_pred             --------ChhhcCCceEEEEcCCCHH
Confidence                    1111234899999998654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.82  E-value=0.096  Score=41.56  Aligned_cols=31  Identities=29%  Similarity=0.347  Sum_probs=28.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|.|+|||..|..+|..|++.+              .+|+|..+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g--------------~~V~l~~~~   31 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG--------------HEVTLWGRD   31 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT--------------EEEEEETSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcC--------------CEEEEEecc
Confidence            6899999999999999999987              899999654

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.76  E-value=0.26  Score=46.03  Aligned_cols=77  Identities=22%  Similarity=0.287  Sum_probs=52.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh--CCCEEEeCceE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK--SGVRLVRGIVK   91 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~--~gV~v~~~~V~   91 (283)
                      .++++|+|.|.+|+.+|..|++.+              .+|++.+.....+    .     .+.|++  .||++..+.-.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g--------------~~v~~~d~~~~~~----~-----~~~l~~~~~gi~~~~g~~~   61 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNG--------------AEVAAYDAELKPE----R-----VAQIGKMFDGLVFYTGRLK   61 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCCCch----h-----HHHHhhccCCcEEEeCCCC
Confidence            468999999999999999999887              8999998753221    1     122444  47777655210


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhh
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLV  123 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~  123 (283)
                          ..      ..-.+|.||.++|..|. +.+
T Consensus        62 ----~~------~~~~~d~vv~spgi~~~~p~~   84 (445)
T PRK04308         62 ----DA------LDNGFDILALSPGISERQPDI   84 (445)
T ss_pred             ----HH------HHhCCCEEEECCCCCCCCHHH
Confidence                00      01248999999999885 433

>PLN02676 polyamine oxidase

Probab=93.70  E-value=0.089  Score=49.79  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=28.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      ...+|+|||||++|+.+|..|++.+              . +|+++|+.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g--------------~~~v~vlE~~   59 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAG--------------IEDILILEAT   59 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC--------------CCcEEEecCC
Confidence            3468999999999999999999876              4 58888875

>PLN02612 phytoene desaturase

Probab=93.68  E-value=0.085  Score=50.91  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|||||.+|+.+|.+|++.+              .+|+++|+.
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g--------------~~~~~~e~~  125 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAG--------------HKPILLEAR  125 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecC
Confidence            4578999999999999999999877              788888875

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=93.67  E-value=0.1  Score=48.02  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=32.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI   62 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~   62 (283)
                      .+..+|+|||+|.+|+-.|.+|.+.+              .+|+++|.. ++
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG--------------~~v~ilEar~r~   42 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAG--------------YQVQILEARDRV   42 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcC--------------cEEEEEeccCCc
Confidence            34568999999999999999999887              899999875 44

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=93.64  E-value=0.072  Score=50.41  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=29.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      ...|+|||||.+|+.+|.+|++..            +..+|+|+|+
T Consensus         6 ~~DvvIIGgGI~G~sla~~L~~~~------------~~~~V~vlEr   39 (497)
T PRK13339          6 SKDVVLVGAGILSTTFGVLLKELD------------PDWNIEVVER   39 (497)
T ss_pred             cCCEEEECchHHHHHHHHHHHhCC------------CCCeEEEEEc
Confidence            357999999999999999999873            2289999998

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=93.62  E-value=0.078  Score=51.31  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             CCCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            2 FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         2 ~~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|..++++-.....|+|||+|.+|+.+|..+++.+              .+|+|||+.
T Consensus         4 ~~~~~~~~~~~~~~dvvvvG~G~aG~~aa~~~~~~g--------------~~v~l~ek~   48 (578)
T PRK12843          4 VVSELSPERWDAEFDVIVIGAGAAGMSAALFAAIAG--------------LKVLLVERT   48 (578)
T ss_pred             ccccCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence            456666665555568999999999999999999876              788888763

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.56  E-value=0.26  Score=46.28  Aligned_cols=55  Identities=24%  Similarity=0.271  Sum_probs=39.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      .++|+|+|.|.+|+.+|..|...+              .+|++.+..+.. ..+     ...+.|++.|+.+..+
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G--------------~~V~~~D~~~~~-~~~-----~~~~~l~~~gi~~~~~   68 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLG--------------AKVTAFDKKSEE-ELG-----EVSNELKELGVKLVLG   68 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCC--------------CEEEEECCCCCc-cch-----HHHHHHHhCCCEEEeC
Confidence            478999999999999999999887              899999875311 111     1123367778888754

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.55  E-value=0.22  Score=46.71  Aligned_cols=72  Identities=18%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             ccCeEEEEccCcHHHH-HHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve-~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      +.++|+|+|-|-+|+. +|..|.+.+              .+|++.+....     +.    . +.|++.|+++..+ ..
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G--------------~~V~~~D~~~~-----~~----~-~~l~~~gi~~~~~~~~   61 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLG--------------YKVSGSDLKES-----AV----T-QRLLELGAIIFIGHDA   61 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCC--------------CeEEEECCCCC-----hH----H-HHHHHCCCEEeCCCCH
Confidence            3468999999999999 699998887              89999887532     11    1 2367778888754 21


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+            -.+|.||.++|+.+.
T Consensus        62 ~~~------------~~~d~vv~spgi~~~   79 (461)
T PRK00421         62 ENI------------KDADVVVYSSAIPDD   79 (461)
T ss_pred             HHC------------CCCCEEEECCCCCCC
Confidence            111            037888888888775

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=93.49  E-value=0.12  Score=49.50  Aligned_cols=37  Identities=14%  Similarity=0.029  Sum_probs=29.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++++|||||.+|+.+|..|.+.++          -++.+|+|+|+.
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~----------~~G~~VtIlEk~   58 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQ----------MPGENITILEEL   58 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccC----------CCCCcEEEEeCC
Confidence            4799999999999999999987541          023789999875

>PRK02106 choline dehydrogenase; Validated

Probab=93.48  E-value=0.082  Score=50.93  Aligned_cols=32  Identities=28%  Similarity=0.542  Sum_probs=26.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHH-hhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~-~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.++|||||.+|+-+|..|++ .+              .+|.+||++
T Consensus         6 ~D~iIVG~G~aG~vvA~rLae~~g--------------~~VlvlEaG   38 (560)
T PRK02106          6 YDYIIIGAGSAGCVLANRLSEDPD--------------VSVLLLEAG   38 (560)
T ss_pred             CcEEEECCcHHHHHHHHHHHhCCC--------------CeEEEecCC
Confidence            479999999999999999998 34              666666665

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.44  E-value=0.33  Score=42.73  Aligned_cols=78  Identities=23%  Similarity=0.347  Sum_probs=46.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD   94 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~   94 (283)
                      .+|+|+|+|..|.-+|..|++.+              .+|+++.+.       +.     .+.+.+.|+.+....-....
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g--------------~~V~~~~r~-------~~-----~~~~~~~g~~~~~~~~~~~~   54 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAG--------------RDVTFLVRP-------KR-----AKALRERGLVIRSDHGDAVV   54 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--------------CceEEEecH-------HH-----HHHHHhCCeEEEeCCCeEEe
Confidence            37999999999999999999876              889998541       11     12355567666433100001


Q ss_pred             CCeEEEcCCcE--EEeeEEEEcCCCCC
Q 023375           95 SQKLILNDGTE--VPYGLLVWSTGVGP  119 (283)
Q Consensus        95 ~~~v~~~~g~~--i~~d~vi~a~G~~~  119 (283)
                      ...+ ..+.++  -++|.+|+|+....
T Consensus        55 ~~~~-~~~~~~~~~~~d~vilavk~~~   80 (305)
T PRK12921         55 PGPV-ITDPEELTGPFDLVILAVKAYQ   80 (305)
T ss_pred             ccee-ecCHHHccCCCCEEEEEecccC
Confidence            1111 122221  35788888877544

>PLN03000 amine oxidase

Probab=93.38  E-value=0.11  Score=52.01  Aligned_cols=34  Identities=29%  Similarity=0.466  Sum_probs=28.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|+|||||++|+.+|..|...+              .+|+++|+.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G--------------~~V~VlE~~  216 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFG--------------FKVTVLEGR  216 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCC--------------CcEEEEEcc
Confidence            3478999999999999999999876              677777764

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=93.33  E-value=0.13  Score=50.21  Aligned_cols=44  Identities=18%  Similarity=0.095  Sum_probs=35.5

Q ss_pred             CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          140 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       140 ~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++++| +.|++||+|||+..       .....+..+..+|++++.++...+.
T Consensus       389 ~~~~T-~v~glyA~Ge~~~~-------~~~~l~~~s~~~g~~ag~~~~~~~~  432 (608)
T PRK06854        389 YNRMT-TVEGLFAAGDVVGG-------SPHKFSSGSFAEGRIAAKAAVRYIL  432 (608)
T ss_pred             ccccc-CCCCEEEeeecCCC-------CcchhHHHHHHHHHHHHHHHHHHHH
Confidence            88998 89999999999742       1244667788899999999887765

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=93.27  E-value=0.15  Score=44.93  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~   64 (283)
                      .+++|||+|.+|.-+|.+++.++              ++|.+||+. ++..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~g--------------k~VLIvekR~HIGG   38 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLG--------------KRVLIVEKRNHIGG   38 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcC--------------CEEEEEeccccCCC
Confidence            36899999999999999888887              899999986 5544

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.27  E-value=0.097  Score=45.94  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL   63 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l   63 (283)
                      ..+|.|||+|..|..+|..++..+              .+|++++.+ +.+
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G--------------~~V~l~d~~~~~~   41 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAG--------------VDVLVFETTEELA   41 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCC--------------CEEEEEECCHHHH
Confidence            358999999999999999999877              999999886 433

>PTZ00188 adrenodoxin reductase; Provisional

Probab=93.26  E-value=1.9  Score=40.83  Aligned_cols=49  Identities=12%  Similarity=0.159  Sum_probs=32.3

Q ss_pred             cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCccc-CCCCCEEEeccccc
Q 023375          104 TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV-PSVQDVFAVGDCSG  158 (283)
Q Consensus       104 ~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~-~~~~~VfaiGD~a~  158 (283)
                      +++++|+|+-++|.+..++.   +++.|.+  +.+.. .++ ...|++|+.|=+..
T Consensus       366 ~~~~~~lV~rsiGY~g~p~~---g~pFd~~--~~n~~-grv~~~~~g~Y~~GWiKr  415 (506)
T PTZ00188        366 KVLVTPLVIFATGFKKSNFA---ENLYNQS--VQMFK-EDIGQHKFAIFKAGWFDK  415 (506)
T ss_pred             EEEEcCEEEEcccccCCCCC---CCCcccc--CCCCC-CcccCCCCCcEEeeecCc
Confidence            36899999999999998653   3444422  33321 221 13699999996665

>PLN02568 polyamine oxidase

Probab=93.23  E-value=0.12  Score=49.47  Aligned_cols=37  Identities=22%  Similarity=0.398  Sum_probs=28.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||+|.+|+.+|..|++.+..         ..+.+|+|+|+.
T Consensus         6 ~~v~iiGaG~aGl~aa~~L~~~g~~---------~~~~~v~v~E~~   42 (539)
T PLN02568          6 PRIVIIGAGMAGLTAANKLYTSSAA---------NDMFELTVVEGG   42 (539)
T ss_pred             CcEEEECCCHHHHHHHHHHHhcccc---------cCCceEEEEeCC
Confidence            5899999999999999999976410         112678888875

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.23  E-value=0.13  Score=42.72  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=32.7

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||+|-.|.++|..|+..+-             .++++++..
T Consensus        16 q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-------------g~i~lvD~D   54 (200)
T TIGR02354        16 VQKLEQATVAICGLGGLGSNVAINLARAGI-------------GKLILVDFD   54 (200)
T ss_pred             HHHHhCCcEEEECcCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence            445567899999999999999999998872             379998875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.21  E-value=0.12  Score=43.74  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=33.2

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||.|.+|.++|..|+..+-             .++++++..
T Consensus        16 q~~L~~~~VlivG~GglGs~va~~La~~Gv-------------g~i~lvD~D   54 (228)
T cd00757          16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGV-------------GKLGLVDDD   54 (228)
T ss_pred             HHHHhCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence            455567899999999999999999999873             688998775

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=93.12  E-value=0.69  Score=41.02  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      -.|||||||.+|+..+..|...+
T Consensus        10 spvvVIGgGLAGLsasn~iin~g   32 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKG   32 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcC
Confidence            35999999999999999998766

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.00  E-value=0.14  Score=42.55  Aligned_cols=40  Identities=13%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+++-+..+|+|||.|..|.++|..|+..+-             .++++++..
T Consensus        15 ~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-------------~~i~lvD~d   54 (202)
T TIGR02356        15 GQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-------------GTIVIVDDD   54 (202)
T ss_pred             HHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEecCC
Confidence            3455567899999999999999999998872             589999886

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.98  E-value=0.29  Score=40.51  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=33.7

Q ss_pred             HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+++-+..+|+|||.|..|.|+|..|+..+-             .++++++..
T Consensus        13 ~q~~L~~s~VlviG~gglGsevak~L~~~GV-------------g~i~lvD~d   52 (198)
T cd01485          13 AQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-------------DSITIVDHR   52 (198)
T ss_pred             HHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEECC
Confidence            3455667899999999999999999998873             679999875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=92.95  E-value=0.11  Score=50.15  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||+|.+|+.+|.++++.+              .+|+|+|+.
T Consensus        10 ~DVvVVG~G~aGl~AA~~aa~~G--------------~~v~llEk~   41 (574)
T PRK12842         10 CDVLVIGSGAGGLSAAITARKLG--------------LDVVVLEKE   41 (574)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcC--------------CeEEEEecC
Confidence            47999999999999999999877              899999986

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.89  E-value=0.16  Score=45.22  Aligned_cols=37  Identities=22%  Similarity=0.347  Sum_probs=30.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++..+|+|||+|.+|..+|..|...+-.            .++.|++.+
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~------------~el~L~D~~   40 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIA------------DELVIIDIN   40 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCC------------CEEEEEeCC
Confidence            4567999999999999999999865411            489999875

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=92.83  E-value=0.3  Score=44.46  Aligned_cols=56  Identities=13%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhh
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVK  124 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~  124 (283)
                      ..+...+.+.+++ |++++.+ .|.+++.+    .|++.+|+.+.+|.||+|+|.....+..
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~  195 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQ  195 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccc
Confidence            5666777777888 9999998 79888643    3666778779999999999987665443

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=92.75  E-value=0.12  Score=49.21  Aligned_cols=31  Identities=29%  Similarity=0.358  Sum_probs=27.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|||||+| +|+.+|.++++.+              .+|+|||+.
T Consensus         8 ~DVvVVG~G-aGl~aA~~aa~~G--------------~~V~vlEk~   38 (513)
T PRK12837          8 VDVLVAGSG-GGVAGAYTAAREG--------------LSVALVEAT   38 (513)
T ss_pred             cCEEEECch-HHHHHHHHHHHCC--------------CcEEEEecC
Confidence            479999999 9999999999877              888888864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.68  E-value=0.15  Score=45.82  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=34.7

Q ss_pred             CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +.+++-+.++|+|||.|..|.++|..|+..+-             .+++|++...
T Consensus        17 ~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-------------g~i~lvD~D~   58 (338)
T PRK12475         17 EGQRKIREKHVLIVGAGALGAANAEALVRAGI-------------GKLTIADRDY   58 (338)
T ss_pred             HHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCCc
Confidence            34456677899999999999999999999872             4899998863

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.52  E-value=0.18  Score=41.66  Aligned_cols=41  Identities=15%  Similarity=0.193  Sum_probs=34.3

Q ss_pred             HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      .+++-+..+|+|||.|..|.|+|..|+..+-             .++++++...
T Consensus        15 ~Q~~L~~s~VlIiG~gglG~evak~La~~GV-------------g~i~lvD~d~   55 (197)
T cd01492          15 AQKRLRSARILLIGLKGLGAEIAKNLVLSGI-------------GSLTILDDRT   55 (197)
T ss_pred             HHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-------------CEEEEEECCc
Confidence            3455667899999999999999999998873             6899998763

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.43  E-value=0.15  Score=49.56  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=28.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||+|.+|+-+|.++++.+              .+|+|++..
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G--------------~~V~lieK~   35 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAG--------------VHVDLFSLV   35 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence            47999999999999999999876              889999853

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.37  E-value=0.19  Score=42.87  Aligned_cols=46  Identities=24%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             CCCCCH--HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            3 LAGISE--EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         3 ~~~~~~--~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +++..+  +++-+..+|+|||.|..|.++|..|+..+-             .++++++...
T Consensus        11 l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-------------g~i~lvD~D~   58 (240)
T TIGR02355        11 LRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-------------GNLTLLDFDT   58 (240)
T ss_pred             cccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-------------CEEEEEeCCc
Confidence            444443  455667899999999999999999998873             6899998763

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=92.28  E-value=0.64  Score=41.65  Aligned_cols=79  Identities=20%  Similarity=0.227  Sum_probs=49.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-c-eEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-I-VKD   92 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~-V~~   92 (283)
                      ++|.|||+|..|.-+|..|++.+              .+|++++++       +    . .+.+.+.|+.+... . -..
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G--------------~~V~~~~r~-------~----~-~~~~~~~g~~~~~~~~~~~~   56 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAG--------------ADVTLIGRA-------R----I-GDELRAHGLTLTDYRGRDVR   56 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcC--------------CcEEEEecH-------H----H-HHHHHhcCceeecCCCccee
Confidence            57999999999999999999877              899999752       1    1 23456667766432 1 111


Q ss_pred             EeCCeEEEc-CCc-EEEeeEEEEcCCCCC
Q 023375           93 VDSQKLILN-DGT-EVPYGLLVWSTGVGP  119 (283)
Q Consensus        93 v~~~~v~~~-~g~-~i~~d~vi~a~G~~~  119 (283)
                      +....+... +-+ .-.+|.||+|+....
T Consensus        57 ~~~~~~~~~~~~~~~~~~D~vil~vk~~~   85 (341)
T PRK08229         57 VPPSAIAFSTDPAALATADLVLVTVKSAA   85 (341)
T ss_pred             cccceeEeccChhhccCCCEEEEEecCcc
Confidence            111222221 111 235888888886543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=92.22  E-value=0.2  Score=45.10  Aligned_cols=39  Identities=23%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||+|-.|.++|..|+..+-             .+|++++..
T Consensus        19 Q~~L~~~~VlVvG~GglGs~va~~La~aGv-------------g~i~lvD~D   57 (339)
T PRK07688         19 QQKLREKHVLIIGAGALGTANAEMLVRAGV-------------GKVTIVDRD   57 (339)
T ss_pred             HHHhcCCcEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence            345566899999999999999999998872             489999886

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.18  E-value=0.16  Score=49.30  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||.+|+-+|.++++.+              .+|+||+..
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G--------------~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAG--------------LSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence            58999999999999999998876              788888874

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.14  E-value=0.21  Score=42.77  Aligned_cols=39  Identities=28%  Similarity=0.287  Sum_probs=33.0

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||.|..|.++|..|+..+-             .++++++..
T Consensus        27 Q~~L~~~~VliiG~GglGs~va~~La~~Gv-------------g~i~lvD~D   65 (245)
T PRK05690         27 QEKLKAARVLVVGLGGLGCAASQYLAAAGV-------------GTLTLVDFD   65 (245)
T ss_pred             HHHhcCCeEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence            445566899999999999999999998873             689999875

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.12  E-value=0.57  Score=44.16  Aligned_cols=73  Identities=23%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      ..++|+|+|.|-+|+.+|..|.+.+              .+|++.+...      ..    ..+.+++.||++..+ .-.
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G--------------~~V~~~D~~~------~~----~~~~l~~~gi~~~~~~~~~   69 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELG--------------CDVVVADDNE------TA----RHKLIEVTGVADISTAEAS   69 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCC--------------CEEEEECCCh------HH----HHHHHHhcCcEEEeCCCch
Confidence            3468999999999999999998877              8888887531      01    122345578888754 110


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                          +.+       -.+|.||.++|+.+.
T Consensus        70 ----~~~-------~~~d~vV~Spgi~~~   87 (473)
T PRK00141         70 ----DQL-------DSFSLVVTSPGWRPD   87 (473)
T ss_pred             ----hHh-------cCCCEEEeCCCCCCC
Confidence                001       137899999999876

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.07  E-value=0.16  Score=49.68  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=28.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|.+|+-+|.++++.+              .+|+||+..
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G--------------~~V~lieK~   40 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERG--------------LRVAVVCKS   40 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecc
Confidence            47999999999999999999876              788888774

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.07  E-value=0.21  Score=42.19  Aligned_cols=32  Identities=28%  Similarity=0.503  Sum_probs=29.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++++|||+|..|..+|..|.+.+              .+|++|+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g--------------~~Vv~Id~d   32 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG--------------HNVVLIDRD   32 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC--------------CceEEEEcC
Confidence            47999999999999999999987              899999875

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=92.06  E-value=0.18  Score=48.46  Aligned_cols=32  Identities=31%  Similarity=0.462  Sum_probs=28.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|.+|+-+|.++++.+              .+|+|||+.
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G--------------~~VivlEK~   36 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAG--------------KRVLLLDQE   36 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            47999999999999999999877              889998865

>PRK08328 hypothetical protein; Provisional

Probab=92.01  E-value=0.23  Score=42.15  Aligned_cols=41  Identities=24%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.+++-+..+|+|||.|-.|.++|..|+..+-             .++++++..
T Consensus        20 ~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-------------g~i~lvD~D   60 (231)
T PRK08328         20 EGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-------------GRILLIDEQ   60 (231)
T ss_pred             HHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence            34455667899999999999999999999873             689999875

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=91.98  E-value=0.19  Score=48.75  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|||||+|.+|+.+|.++++.+              .+|+|+|+.
T Consensus        12 ~DVvVVG~G~AGl~AA~~aae~G--------------~~VivlEk~   43 (584)
T PRK12835         12 VDVLVVGSGGGGMTAALTAAARG--------------LDTLVVEKS   43 (584)
T ss_pred             CCEEEECccHHHHHHHHHHHHCC--------------CcEEEEEcC
Confidence            57999999999999999999877              899999875

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=91.94  E-value=0.23  Score=41.53  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=33.6

Q ss_pred             HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+++-+..+|+|||.|-.|.++|..|+..+-             .++++++..
T Consensus        22 ~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-------------g~i~lvD~D   61 (212)
T PRK08644         22 LLEKLKKAKVGIAGAGGLGSNIAVALARSGV-------------GNLKLVDFD   61 (212)
T ss_pred             HHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence            3456677899999999999999999998872             578898876

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.85  E-value=0.18  Score=49.08  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=27.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||.+|+.+|.++++.+              .+|+|+++.
T Consensus        13 ~DVvVIG~G~AGl~AAl~Aa~~G--------------~~V~lveK~   44 (598)
T PRK09078         13 YDVVVVGAGGAGLRATLGMAEAG--------------LKTACITKV   44 (598)
T ss_pred             cCEEEECccHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence            47999999999999999999876              788888664

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=91.83  E-value=0.15  Score=49.66  Aligned_cols=30  Identities=30%  Similarity=0.412  Sum_probs=26.2

Q ss_pred             EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      |+|||+|.+|+-+|.++++.+              .+|+|+++.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G--------------~~VilleK~   30 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELG--------------YHVKLFSYV   30 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcC--------------CCEEEEEec
Confidence            689999999999999998876              778888764

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=91.76  E-value=0.29  Score=41.22  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++|+|||||..|..=+..|.+.+              .+|++|.+     .+.+++..    ......|+++....  
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap-----~i~~el~~----l~~~~~i~~~~r~~--   78 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSK-----KFSKEFLD----LKKYGNLKLIKGNY--   78 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcC-----CCCHHHHH----HHhCCCEEEEeCCC--
Confidence            4568999999999999888888876              89999964     34445433    23334466654321  


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                       ++       +.--.+++||.||+-.
T Consensus        79 -~~-------~dl~g~~LViaATdD~   96 (223)
T PRK05562         79 -DK-------EFIKDKHLIVIATDDE   96 (223)
T ss_pred             -Ch-------HHhCCCcEEEECCCCH
Confidence             11       1112378999998743

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=91.73  E-value=0.22  Score=46.55  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL   63 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l   63 (283)
                      -.|+|||+|.+|+-+|+.|+..+              ++|.++|++...
T Consensus         5 ~DViViGtGL~e~ilAa~Ls~~G--------------kkVLhlD~n~~y   39 (443)
T PTZ00363          5 YDVIVCGTGLKECILSGLLSVNG--------------KKVLHMDRNPYY   39 (443)
T ss_pred             ceEEEECCChHHHHHHhhhhhCC--------------CEEEEecCCCCc
Confidence            46999999999999999999887              999999998443

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=91.68  E-value=0.21  Score=46.41  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||+|.+|+.+|..+++.+              .+|++|+++
T Consensus         3 ~DviIIG~G~aGl~aA~~la~~g--------------~~v~vi~~~   34 (422)
T PRK05329          3 FDVLVIGGGLAGLTAALAAAEAG--------------KRVALVAKG   34 (422)
T ss_pred             CCEEEECccHHHHHHHHHHHHCC--------------CcEEEEECC
Confidence            47999999999999999999877              889999864

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.68  E-value=0.19  Score=48.55  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=28.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|.+|+-+|.++++.+              .+|+|++..
T Consensus         6 ~DVvVVG~G~AGl~AAl~Aae~G--------------~~V~lveK~   37 (566)
T PRK06452          6 YDAVVIGGGLAGLMSAHEIASAG--------------FKVAVISKV   37 (566)
T ss_pred             CcEEEECccHHHHHHHHHHHHCC--------------CcEEEEEcc
Confidence            47999999999999999998876              788888864

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=91.67  E-value=0.25  Score=47.77  Aligned_cols=45  Identities=18%  Similarity=0.376  Sum_probs=37.7

Q ss_pred             CCCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            2 FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         2 ~~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+.+.+ +-+..+|+|||+|-.|..+|..|+.++-             .++++++.+
T Consensus       327 llP~l~~e-kL~~~kVLIvGaGGLGs~VA~~La~~GV-------------g~ItlVD~D  371 (664)
T TIGR01381       327 LHPDLQLE-RYSQLKVLLLGAGTLGCNVARCLIGWGV-------------RHITFVDNG  371 (664)
T ss_pred             cCChhhHH-HHhcCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEEcCC
Confidence            46777774 5566799999999999999999999984             689999875

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR01810 betA choline dehydrogenase

Probab=91.64  E-value=0.18  Score=48.28  Aligned_cols=22  Identities=32%  Similarity=0.777  Sum_probs=19.8

Q ss_pred             eEEEEccCcHHHHHHHHHHHhh
Q 023375           16 HCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      .++|||||.+|+-+|..|++.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~   22 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDV   22 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCC
Confidence            3799999999999999999764

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=91.62  E-value=0.45  Score=41.68  Aligned_cols=41  Identities=24%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.+++-+..+|+|||.|-.|.|+|..|+..+-             .+|+|++..
T Consensus        12 eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-------------g~itI~D~d   52 (286)
T cd01491          12 EAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-------------KSVTLHDTK   52 (286)
T ss_pred             HHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-------------CeEEEEcCC
Confidence            44566677899999999999999999998873             689999875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.62  E-value=0.22  Score=43.60  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=29.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||+|..|..+|..++..+              .+|++++.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G--------------~~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHG--------------FDVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcC--------------CeEEEEeCC
Confidence            58999999999999999999876              899999875

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.54  E-value=0.76  Score=43.54  Aligned_cols=73  Identities=26%  Similarity=0.333  Sum_probs=50.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      ..++|+|+|.|.+|+.++..|...+              .+|++.+...      ..    . +.+++.|+.+..+.-  
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G--------------~~v~~~D~~~------~~----~-~~l~~~g~~~~~~~~--   63 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFG--------------ARPTVCDDDP------DA----L-RPHAERGVATVSTSD--   63 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCC--------------CEEEEEcCCH------HH----H-HHHHhCCCEEEcCcc--
Confidence            4578999999999999998888776              8999987431      11    1 235667887765410  


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                       ..+.+       -.+|.||.++|+.+.
T Consensus        64 -~~~~l-------~~~D~VV~SpGi~~~   83 (488)
T PRK03369         64 -AVQQI-------ADYALVVTSPGFRPT   83 (488)
T ss_pred             -hHhHh-------hcCCEEEECCCCCCC
Confidence             00000       136999999999876

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=91.37  E-value=0.43  Score=40.78  Aligned_cols=47  Identities=23%  Similarity=0.301  Sum_probs=33.1

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCC--CccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK--DYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~--~~~~V~li~~~   60 (283)
                      .-..+..+|+|||+|-+|.+++..|++.+-.     ...+.  .+.++++++..
T Consensus         6 ~~~~~~~~V~vvG~GGlGs~v~~~Lar~G~a-----~~~~G~~~g~~i~lvD~D   54 (244)
T TIGR03736         6 ALLSRPVSVVLVGAGGTGSQVIAGLARLHHA-----LKALGHPGGLAVTVYDDD   54 (244)
T ss_pred             HHHhCCCeEEEEcCChHHHHHHHHHHHcccc-----ccccCCCCCCEEEEECCC
Confidence            3346778999999999999999999986410     00001  12489999875

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.28  E-value=0.27  Score=47.75  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=28.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|.+|+-+|.++++.+              .+|+|++..
T Consensus         8 ~DVlVVG~G~AGl~AAi~Aa~~G--------------~~V~lleK~   39 (588)
T PRK08958          8 FDAVVIGAGGAGMRAALQISQSG--------------QSCALLSKV   39 (588)
T ss_pred             cCEEEECccHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence            36999999999999999998876              899999875

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=91.25  E-value=0.23  Score=47.91  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=29.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|.+|+-+|..+++.+              .+|+|||+.
T Consensus         8 ~DvvVvG~G~aG~~aA~~aa~~G--------------~~v~llEk~   39 (557)
T PRK07843          8 YDVVVVGSGAAGMVAALTAAHRG--------------LSTVVVEKA   39 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence            47999999999999999999887              899999985

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=91.25  E-value=0.23  Score=47.91  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=28.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|.+|+.+|.++++.+              .+|+|||+.
T Consensus         7 ~DvvIiG~G~aGl~aA~~~a~~G--------------~~v~liEk~   38 (557)
T PRK12844          7 YDVVVVGSGGGGMCAALAAADSG--------------LEPLIVEKQ   38 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence            47999999999999999999887              788888864

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=91.19  E-value=0.23  Score=48.50  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=27.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||.+|+-+|.++++.+              .+|+|++..
T Consensus        30 ~DVlVIG~G~AGl~AAi~Aa~~G--------------~~V~lveK~   61 (617)
T PTZ00139         30 YDAVVVGAGGAGLRAALGLVELG--------------YKTACISKL   61 (617)
T ss_pred             cCEEEECccHHHHHHHHHHHHcC--------------CcEEEEecc
Confidence            47999999999999999998876              788888764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.16  E-value=0.23  Score=48.64  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      ..|+|||+|.+|+-+|.++++.+              .+|+|++.
T Consensus        36 ~DVlVVG~G~AGl~AAi~Aae~G--------------~~VilieK   66 (640)
T PRK07573         36 FDVIVVGTGLAGASAAATLGELG--------------YNVKVFCY   66 (640)
T ss_pred             cCEEEECccHHHHHHHHHHHHcC--------------CcEEEEec
Confidence            47999999999999999998876              78888874

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=91.15  E-value=0.4  Score=36.95  Aligned_cols=77  Identities=10%  Similarity=0.168  Sum_probs=48.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      +.++++|||+|-+|-.++..|...+.             .+|+++.+..      ++ .+.+.+.+....+++..- ...
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~-------------~~i~i~nRt~------~r-a~~l~~~~~~~~~~~~~~~~~~   70 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGA-------------KEITIVNRTP------ER-AEALAEEFGGVNIEAIPLEDLE   70 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTS-------------SEEEEEESSH------HH-HHHHHHHHTGCSEEEEEGGGHC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEEECCH------HH-HHHHHHHcCccccceeeHHHHH
Confidence            56899999999999999999998862             5699997741      22 233333343334444321 111


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                 ...-.+|.||.||+....
T Consensus        71 -----------~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   71 -----------EALQEADIVINATPSGMP   88 (135)
T ss_dssp             -----------HHHHTESEEEE-SSTTST
T ss_pred             -----------HHHhhCCeEEEecCCCCc
Confidence                       011249999999987644

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02730 carot_isom carotene isomerase

Probab=91.12  E-value=0.78  Score=43.42  Aligned_cols=51  Identities=16%  Similarity=0.097  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCCC
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      ..+.+.+.+.+++.|++++.+ +|++|..  +   +|.+.+|+++.+|.||+++|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            467778888899999999999 8988853  2   5777889899999999999853

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=91.08  E-value=0.27  Score=47.13  Aligned_cols=31  Identities=23%  Similarity=0.486  Sum_probs=27.8

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||+|++|.-+|..|++.+              .+|.+||++
T Consensus         2 dv~ivg~Gp~G~~~a~~l~~~g--------------~~v~~~e~~   32 (544)
T TIGR02462         2 DVFIAGSGPIGCTYARLCVDAG--------------LKVAMVEIG   32 (544)
T ss_pred             cEEEECCchHHHHHHHHHHHCC--------------CeEEEEecc
Confidence            5899999999999999999876              888888875

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK08223 hypothetical protein; Validated

Probab=91.02  E-value=0.35  Score=42.36  Aligned_cols=41  Identities=17%  Similarity=0.179  Sum_probs=34.7

Q ss_pred             CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.+++-+..+|+|||.|-.|.++|..|+..+-             .+++|++..
T Consensus        20 e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-------------G~i~lvD~D   60 (287)
T PRK08223         20 TEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-------------GKFTIADFD   60 (287)
T ss_pred             HHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-------------CeEEEEeCC
Confidence            34556677899999999999999999999873             688998875

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=90.97  E-value=0.69  Score=43.77  Aligned_cols=62  Identities=16%  Similarity=0.300  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-e--EEE---cCC--cEEEeeEEEEcCCCCCchhhhccCCC
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP  129 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~-~--v~~---~~g--~~i~~d~vi~a~G~~~~~~~~~~~l~  129 (283)
                      ..+...+.+.+++.|++++.+ +|++++.  + .  +.+   .+|  .++.+|.||+|+|.....+.+.+|++
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~  250 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP  250 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence            567777778888899999999 8998864  2 2  332   223  36899999999999887777777665

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02602 lactate dehydrogenase

Probab=90.91  E-value=0.47  Score=42.90  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=28.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||+|..|..+|..|....-            ..++.|++..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l------------~~el~LiDi~   71 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDL------------ADELALVDVN   71 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC------------CCEEEEEeCC
Confidence            699999999999999999886441            1589999875

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.88  E-value=0.36  Score=40.99  Aligned_cols=40  Identities=33%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+++-+..+|+|+|.|-.|.++|..|++.+-             .+++|++..
T Consensus         5 ~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-------------g~i~LvD~D   44 (231)
T cd00755           5 GLEKLRNAHVAVVGLGGVGSWAAEALARSGV-------------GKLTLIDFD   44 (231)
T ss_pred             HHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence            3456677899999999999999999998873             689999875

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=90.87  E-value=0.25  Score=48.33  Aligned_cols=32  Identities=28%  Similarity=0.337  Sum_probs=28.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|.+|+-+|.++++.+              .+|+||+..
T Consensus        51 ~DVlVIG~G~AGl~AAl~Aae~G--------------~~VilveK~   82 (635)
T PLN00128         51 YDAVVVGAGGAGLRAAIGLSEHG--------------FNTACITKL   82 (635)
T ss_pred             cCEEEECccHHHHHHHHHHHhcC--------------CcEEEEEcC
Confidence            57999999999999999999876              788888765

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=90.81  E-value=0.25  Score=48.59  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=28.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||.+|+-+|.++++.+              .+|+|++..
T Consensus         6 ~DVlVIG~G~AGl~AAi~Aae~G--------------~~VivleK~   37 (657)
T PRK08626          6 TDALVIGAGLAGLRVAIAAAQRG--------------LDTIVLSLV   37 (657)
T ss_pred             ccEEEECccHHHHHHHHHHHHcC--------------CCEEEEeCC
Confidence            36999999999999999999876              888888853

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=90.78  E-value=0.23  Score=47.68  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=29.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .-.+||||+|..|..+|..|++.+              .+|.++|++
T Consensus         7 ~~D~vIVGsG~aG~~lA~rLs~~g--------------~~VllLEaG   39 (542)
T COG2303           7 EYDYVIVGSGSAGSVLAARLSDAG--------------LSVLVLEAG   39 (542)
T ss_pred             CCCEEEECCCchhHHHHHHhcCCC--------------CeEEEEeCC
Confidence            358999999999999999999654              899999987

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=90.72  E-value=0.28  Score=47.74  Aligned_cols=31  Identities=26%  Similarity=0.361  Sum_probs=25.9

Q ss_pred             eEEEEccCcHHHHHHHHHH----HhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELS----DFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~----~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||||.+|+-+|.+++    +.+              .+|+|+++.
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G--------------~~VilieK~   35 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKG--------------LKIVLVEKA   35 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCC--------------CeEEEEEcc
Confidence            4899999999999999998    334              788888774

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=90.70  E-value=0.3  Score=47.29  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ....|+|||+|.+|+.+|.++++.+              .+|+|||+.
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g--------------~~v~~iek~   44 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHG--------------LKVIVVEKD   44 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecC
Confidence            3468999999999999999999876              888888864

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.70  E-value=0.44  Score=36.95  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=28.3

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||.|-.|.++|..|+..+-             .++++++..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv-------------~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGV-------------GKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-------------CEEEEEcCC
Confidence            58999999999999999998872             589999875

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=90.68  E-value=0.76  Score=41.10  Aligned_cols=42  Identities=12%  Similarity=0.175  Sum_probs=30.7

Q ss_pred             cccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++.+|.|||+ |..|..+|..|....-.       ......++.|++..
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~-------~~~~~~el~L~Di~   43 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELF-------GKDQPVVLHLLDIP   43 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcc-------cCCCccEEEEEecC
Confidence            46789999998 99999999998854311       01122489999875

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=90.58  E-value=0.91  Score=41.72  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCCchhhhcc
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSL  126 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~~~~~~~~  126 (283)
                      ..+...+.+.+++.|++++.+ +|++++.  +.   |++. +.++.+|.||.|+|.....+....
T Consensus       201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~  264 (416)
T PRK00711        201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPL  264 (416)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHh
Confidence            355666777788899999998 8988864  32   4444 457999999999998776555444

>PRK04148 hypothetical protein; Provisional

Probab=90.52  E-value=0.38  Score=37.12  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.+++++||.| .|.++|..|++.+              .+|+.++.+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G--------------~~ViaIDi~   48 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESG--------------FDVIVIDIN   48 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCC--------------CEEEEEECC
Confidence            34789999999 9999999999877              899999765

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.51  E-value=0.29  Score=43.66  Aligned_cols=33  Identities=12%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||+|..|..+|..++..+              .+|++++..
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG--------------~~V~l~D~~   39 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHG--------------LDVVAWDPA   39 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence            468999999999999999999887              999999876

>PLN02612 phytoene desaturase

Probab=90.42  E-value=0.95  Score=43.77  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce----EEEcCCcEEEeeEEEEcCCC
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~----v~~~~g~~i~~d~vi~a~G~  117 (283)
                      ..+.+.+.+.|++.|++|+++ +|++|+.  ++    +.+.+|+++.+|.||.+++.
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            567788888888899999999 8999963  33    66678989999999999863

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.18  E-value=0.26  Score=47.37  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||+|.+|+-+|.++ +.+              .+|+|++..
T Consensus         8 ~DVlVVG~G~AGl~AAi~A-~~G--------------~~VilleK~   38 (543)
T PRK06263          8 TDVLIIGSGGAGARAAIEA-ERG--------------KNVVIVSKG   38 (543)
T ss_pred             cCEEEECccHHHHHHHHHH-hcC--------------CCEEEEEcc
Confidence            5799999999999999999 655              778887764

>PLN02976 amine oxidase

Probab=90.16  E-value=0.34  Score=51.14  Aligned_cols=33  Identities=33%  Similarity=0.485  Sum_probs=28.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||++|+.+|..|...+              .+|+++|+.
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G--------------~~V~VlEa~  725 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQG--------------FSVTVLEAR  725 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCC--------------CcEEEEeec
Confidence            468999999999999999999876              788888864

>PRK08275 putative oxidoreductase; Provisional

Probab=90.10  E-value=0.44  Score=45.86  Aligned_cols=49  Identities=14%  Similarity=0.068  Sum_probs=37.5

Q ss_pred             CccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       134 g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      |.+.||..++| +.|++||+|||+..    +    -.....|.-.|+.++.++...+.
T Consensus       357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~----~----~~~~~~~~~~G~~a~~~~~~~~~  405 (554)
T PRK08275        357 SGVWVNEKAET-TVPGLYAAGDMASV----P----HNYMLGAFTYGWFAGENAAEYVA  405 (554)
T ss_pred             CcEEECCCCcc-CCCCEEECcccCCc----h----hHHHHHHHHHHHHHHHHHHHHHh
Confidence            56999999998 89999999998742    1    12334577889999988877654

>PLN02785 Protein HOTHEAD

Probab=89.97  E-value=0.32  Score=47.12  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=20.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSD   35 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~   35 (283)
                      .-.++|||||.+|+-+|..|++
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~   76 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ   76 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc
Confidence            3689999999999999999997

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=89.93  E-value=0.92  Score=42.43  Aligned_cols=69  Identities=19%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             eEEEEccCcHHHH-HHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 023375           16 HCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV   93 (283)
Q Consensus        16 ~vvVvGgG~~Gve-~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v   93 (283)
                      ++.+||-|-+|+. +|..|.+.+              .+|+..+.... +         ..+.|++.||++..+ ....+
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G--------------~~v~~~D~~~~-~---------~~~~l~~~gi~~~~g~~~~~~   56 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRG--------------YQVSGSDIAEN-A---------TTKRLEALGIPIYIGHSAENL   56 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCC--------------CeEEEECCCcc-h---------HHHHHHHCcCEEeCCCCHHHC
Confidence            4789999999998 899998887              89999876531 1         123467789988754 21111


Q ss_pred             eCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           94 DSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        94 ~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                  -.+|+||.++|+.+.
T Consensus        57 ------------~~~d~vV~spgi~~~   71 (448)
T TIGR01082        57 ------------DDADVVVVSAAIKDD   71 (448)
T ss_pred             ------------CCCCEEEECCCCCCC
Confidence                        026778888877764

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=89.70  E-value=0.44  Score=46.17  Aligned_cols=33  Identities=15%  Similarity=0.278  Sum_probs=27.7

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||+|.+|+-+|.++++.+.            +.+|+|+++.
T Consensus         6 DVlVVG~G~AGl~AAi~Aa~~g~------------g~~V~lleK~   38 (582)
T PRK09231          6 DLAIIGAGGAGLRAAIAAAEANP------------NLKIALISKV   38 (582)
T ss_pred             eEEEECccHHHHHHHHHHHHhCC------------CCcEEEEEcc
Confidence            69999999999999999987531            1689999875

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.60  E-value=1.3  Score=41.66  Aligned_cols=75  Identities=19%  Similarity=0.202  Sum_probs=49.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      +.++|+|+|.|-+|..+|..|.+.+              .+|++.+...... . +.    . +.|++ ++.+..+ .- 
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g--------------~~v~~~d~~~~~~-~-~~----~-~~l~~-~~~~~~~~~~-   63 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHL--------------PAQALTLFCNAVE-A-RE----V-GALAD-AALLVETEAS-   63 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcC--------------CEEEEEcCCCccc-c-hH----H-HHHhh-cCEEEeCCCC-
Confidence            3578999999999999999999887              8999988653211 1 11    1 12444 4444332 10 


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                         .+.+       -.+|+||.++|+.+.
T Consensus        64 ---~~~~-------~~~d~vV~SpgI~~~   82 (468)
T PRK04690         64 ---AQRL-------AAFDVVVKSPGISPY   82 (468)
T ss_pred             ---hHHc-------cCCCEEEECCCCCCC
Confidence               0001       138999999999876

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=89.56  E-value=0.43  Score=43.58  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=29.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...|+|||||++|..+|++|...-.-          ...+|.|++.+
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~----------~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPF----------QDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCcc----------chheeeEEecc
Confidence            56899999999999999999843211          23888898876

>PRK07411 hypothetical protein; Validated

Probab=89.54  E-value=0.63  Score=42.78  Aligned_cols=45  Identities=13%  Similarity=0.215  Sum_probs=36.0

Q ss_pred             CCCCCHH--HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            3 LAGISEE--EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         3 ~~~~~~~--~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|....+  ++-+..+|+|||.|-.|.++|..|+..+-             .+++|++..
T Consensus        25 l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-------------g~l~lvD~D   71 (390)
T PRK07411         25 LPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-------------GRIGIVDFD   71 (390)
T ss_pred             hhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence            4444433  55567899999999999999999999873             688998875

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=89.43  E-value=0.5  Score=43.08  Aligned_cols=39  Identities=23%  Similarity=0.321  Sum_probs=33.0

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||.|..|.++|..|+..+-             .++++++..
T Consensus        36 q~~l~~~~VliiG~GglG~~v~~~La~~Gv-------------g~i~ivD~D   74 (370)
T PRK05600         36 QERLHNARVLVIGAGGLGCPAMQSLASAGV-------------GTITLIDDD   74 (370)
T ss_pred             HHHhcCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEeCC
Confidence            345566899999999999999999998873             589999875

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=89.31  E-value=1.3  Score=41.29  Aligned_cols=75  Identities=20%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD   92 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~   92 (283)
                      .++|+|+|-|-+|..+|..|.+.+              .+|++.+........ .      ...+...+|++..+ .-. 
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G--------------~~v~v~D~~~~~~~~-~------~~~~~~~~i~~~~g~~~~-   64 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLG--------------AEVTVSDDRPAPEGL-A------AQPLLLEGIEVELGSHDD-   64 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCC--------------CeEEEEcCCCCccch-h------hhhhhccCceeecCccch-
Confidence            689999999999999999999988              999999875322211 1      11234457777765 211 


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                              .  ..-.+|.||..+|+.+.
T Consensus        65 --------~--~~~~~d~vV~SPGi~~~   82 (448)
T COG0771          65 --------E--DLAEFDLVVKSPGIPPT   82 (448)
T ss_pred             --------h--ccccCCEEEECCCCCCC
Confidence                    0  12358999999999887

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=89.30  E-value=0.55  Score=41.70  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=28.5

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||.|..|.|+|..|+..+-             .+++|++..
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gv-------------g~ItIvD~D   32 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGF-------------GEIHIIDLD   32 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcC-------------CeEEEEcCC
Confidence            58999999999999999998873             789999875

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR02734 crtI_fam phytoene desaturase

Probab=89.27  E-value=1.3  Score=41.89  Aligned_cols=50  Identities=16%  Similarity=0.138  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCC
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      ..+.+.+.+.+++.|++++++ .|++|..  +   +|++++|+++.+|.||.+++.
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcH
Confidence            456777888888999999999 8988753  3   477788889999999999885

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.25  E-value=0.76  Score=33.99  Aligned_cols=73  Identities=23%  Similarity=0.321  Sum_probs=46.1

Q ss_pred             EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeCC
Q 023375           17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ   96 (283)
Q Consensus        17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~   96 (283)
                      |+|+|.|..|.++|..|.+..              .+|++++.++       +    ..+.+++.|++++.+..++.   
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~--------------~~vvvid~d~-------~----~~~~~~~~~~~~i~gd~~~~---   52 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG--------------IDVVVIDRDP-------E----RVEELREEGVEVIYGDATDP---   52 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT--------------SEEEEEESSH-------H----HHHHHHHTTSEEEES-TTSH---
T ss_pred             eEEEcCCHHHHHHHHHHHhCC--------------CEEEEEECCc-------H----HHHHHHhcccccccccchhh---
Confidence            689999999999999999843              6999997752       1    13456777888776621100   


Q ss_pred             eEEEcCCcEEEeeEEEEcCCCC
Q 023375           97 KLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        97 ~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      . .++.-.--.++.++.+++..
T Consensus        53 ~-~l~~a~i~~a~~vv~~~~~d   73 (116)
T PF02254_consen   53 E-VLERAGIEKADAVVILTDDD   73 (116)
T ss_dssp             H-HHHHTTGGCESEEEEESSSH
T ss_pred             h-HHhhcCccccCEEEEccCCH
Confidence            0 01111112488888888743

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.19  E-value=0.54  Score=42.61  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=33.0

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||.|-.|.++|..|+..+-             .++++++..
T Consensus        23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-------------g~i~lvD~D   61 (355)
T PRK05597         23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGV-------------GHITIIDDD   61 (355)
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence            445566899999999999999999998873             688999875

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=89.09  E-value=0.53  Score=48.11  Aligned_cols=49  Identities=18%  Similarity=0.076  Sum_probs=37.2

Q ss_pred             CccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       134 g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      |.|.||.+.+| +.|++||+|||+...        -...-.|.-.|+.++.++...+.
T Consensus       362 GGi~vd~~~~T-~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~~~  410 (897)
T PRK13800        362 SGVWVDEHART-TVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGTLA  410 (897)
T ss_pred             ceEEecCCCcc-cCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHHHh
Confidence            46889999998 899999999997521        23334577888888888876653

>PLN02735 carbamoyl-phosphate synthase

Probab=89.03  E-value=1.1  Score=46.79  Aligned_cols=45  Identities=24%  Similarity=0.424  Sum_probs=35.6

Q ss_pred             CCCCCCHHHHcccCeEEEEccCcH-----------HHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            2 FLAGISEEEKSRLLHCVVVGGGPT-----------GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         2 ~~~~~~~~~~~~~~~vvVvGgG~~-----------Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      |-..+++.+|...++|+|+|+|+.           |.+++..|.+.+              .+|++++.+
T Consensus        11 ~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G--------------~~Vi~vd~n   66 (1102)
T PLN02735         11 WSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEG--------------YEVVLINSN   66 (1102)
T ss_pred             ccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcC--------------CEEEEEeCC
Confidence            344566667778899999999985           677888888877              888888865

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=88.99  E-value=0.42  Score=47.47  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..++|.|||+|..|..+|..++..+              .+|++++.+
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~G--------------~~V~l~d~~  345 (714)
T TIGR02437       311 KDVKQAAVLGAGIMGGGIAYQSASKG--------------TPIVMKDIN  345 (714)
T ss_pred             cccceEEEECCchHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence            46679999999999999999999887              999999986

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=88.95  E-value=0.82  Score=36.63  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=27.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      .+.+|+|+|+|.+|..+|..+..++              .+++.++.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lG--------------a~v~~~d~   51 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLG--------------AEVVVPDE   51 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT---------------EEEEEES
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCC--------------CEEEeccC
Confidence            4579999999999999999999987              89999865

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=88.78  E-value=0.8  Score=44.43  Aligned_cols=57  Identities=21%  Similarity=0.199  Sum_probs=38.9

Q ss_pred             CCccccCCCcccCCCCCEEEeccccccCcCCCCcCC-CcchHHHHHHHHHHHHHHHHHhh
Q 023375          133 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       133 ~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~-p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .|.|.||.+.++ ..|++||+|||+... ..|...+ -.....|.-.|+++++++...+.
T Consensus       358 ~GGi~vd~~~~t-~i~GLyAaGe~~~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~  415 (582)
T PRK09231        358 MGGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRVAGEQAAERAA  415 (582)
T ss_pred             CCCEEECCCCcc-ccCCEEecccccccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence            367889988998 899999999997421 1121111 12334577789999999887664

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=88.75  E-value=0.5  Score=45.82  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=27.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||||.+|+-+|.++++.++            +.+|+|+++.
T Consensus         5 DVlVIG~G~AGl~AAl~aa~~g~------------g~~V~lveK~   37 (580)
T TIGR01176         5 DIAVIGAGGAGLRAAIAAAEANP------------HLDVALISKV   37 (580)
T ss_pred             eEEEECccHHHHHHHHHHHHhCC------------CCcEEEEEcc
Confidence            69999999999999999987531            1688888875

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=88.73  E-value=0.63  Score=39.57  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||+|..|.|++..|+..+-             .++++++..
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gv-------------g~i~ivD~D   32 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGF-------------GQIHVIDMD   32 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence            58999999999999999998773             688998875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.69  E-value=0.61  Score=40.84  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||+|..|..+|..|+..+              .+|++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G--------------~~V~~~d~~   33 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSG--------------FQTTLVDIK   33 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCC--------------CcEEEEeCC
Confidence            57999999999999999999876              899999876

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.68  E-value=0.6  Score=41.35  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||+|..|..+|..|+..+              .+|+++++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G--------------~~V~v~d~~   34 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAG--------------HEVRLWDAD   34 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCC--------------CeeEEEeCC
Confidence            47999999999999999999877              899999876

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.66  E-value=0.32  Score=42.80  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=29.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -+|+|+|||..|.+.|.-..-++              .+|++++.+
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glg--------------A~Vtild~n  200 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLG--------------ADVTILDLN  200 (371)
T ss_pred             ccEEEECCccccchHHHHHhccC--------------CeeEEEecC
Confidence            48999999999999999998887              999999876

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=88.62  E-value=0.49  Score=49.68  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ....|||||+|.+|+-+|.+.++.+              .+|+++|+.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~G--------------a~VivlEK~  441 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCG--------------AQVILLEKE  441 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEcc
Confidence            3468999999999999999999877              899999875

>PRK12839 hypothetical protein; Provisional

Probab=88.61  E-value=0.51  Score=45.66  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...|+|||+|.+|+.+|..+++.+              .+|++||+.
T Consensus         8 ~~dv~ViG~G~aG~~aa~~~~~~g--------------~~v~~iek~   40 (572)
T PRK12839          8 TYDVVVVGSGAGGLSAAVAAAYGG--------------AKVLVVEKA   40 (572)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence            358999999999999999999876              788888764

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=88.59  E-value=0.62  Score=40.76  Aligned_cols=80  Identities=15%  Similarity=0.247  Sum_probs=47.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      ++++|+|||||..|+  +.++.+...            -.+++++       .+++.+.+..++.|....-... . +++
T Consensus        76 ~pk~VLiiGgGdG~t--lRevlkh~~------------ve~i~~V-------EID~~Vi~~ar~~l~~~~~~~~-dpRv~  133 (282)
T COG0421          76 NPKRVLIIGGGDGGT--LREVLKHLP------------VERITMV-------EIDPAVIELARKYLPEPSGGAD-DPRVE  133 (282)
T ss_pred             CCCeEEEECCCccHH--HHHHHhcCC------------cceEEEE-------EcCHHHHHHHHHhccCcccccC-CCceE
Confidence            446999999999875  566665432            2788998       4566777777777655421111 3 443


Q ss_pred             EEeCCeEEE-cCCcEEEeeEEEEcC
Q 023375           92 DVDSQKLIL-NDGTEVPYGLLVWST  115 (283)
Q Consensus        92 ~v~~~~v~~-~~g~~i~~d~vi~a~  115 (283)
                      =+..|+..+ ++.+. .+|.||+-.
T Consensus       134 i~i~Dg~~~v~~~~~-~fDvIi~D~  157 (282)
T COG0421         134 IIIDDGVEFLRDCEE-KFDVIIVDS  157 (282)
T ss_pred             EEeccHHHHHHhCCC-cCCEEEEcC
Confidence            333333221 12222 688888754

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=88.58  E-value=0.57  Score=41.73  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=28.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||+|..|+-.|+||++.+              .+|.+++..
T Consensus         6 ~dvivvgaglaglvaa~elA~aG--------------~~V~ildQE   37 (552)
T COG3573           6 ADVIVVGAGLAGLVAAAELADAG--------------KRVLILDQE   37 (552)
T ss_pred             ccEEEECccHHHHHHHHHHHhcC--------------ceEEEEccc
Confidence            47999999999999999999988              888888764

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=88.57  E-value=0.59  Score=41.54  Aligned_cols=32  Identities=16%  Similarity=0.359  Sum_probs=27.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||..|+.++..|.+.+              ++..||..+
T Consensus         3 fDv~IIGGGLAGltc~l~l~~~G--------------k~c~iv~~g   34 (421)
T COG3075           3 FDVAIIGGGLAGLTCGLALQQAG--------------KRCAIVNRG   34 (421)
T ss_pred             ccEEEEcCcHHHHHHHHHHHhcC--------------CcEEEEeCC
Confidence            36999999999999999999988              667777654

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=88.57  E-value=0.52  Score=43.58  Aligned_cols=31  Identities=23%  Similarity=0.457  Sum_probs=26.6

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++|||||.+|+-+|..+++.+              .+|.+++.+
T Consensus         2 Dv~IIGgG~aGl~~A~~l~~~g--------------~~v~lv~~~   32 (419)
T TIGR03378         2 DVIIIGGGLAGLSCALRLAEAG--------------KKCAIIAAG   32 (419)
T ss_pred             CEEEECchHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence            5899999999999999998765              678888764

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07395 L-aspartate oxidase; Provisional

Probab=88.57  E-value=0.43  Score=45.98  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=26.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|.+|+-+|.+++. +              .+|+||+..
T Consensus        10 ~DVlVVG~G~AGl~AAi~A~~-G--------------~~V~lieK~   40 (553)
T PRK07395         10 FDVLVVGSGAAGLYAALCLPS-H--------------LRVGLITKD   40 (553)
T ss_pred             CCEEEECccHHHHHHHHHhhc-C--------------CCEEEEEcc
Confidence            479999999999999999863 4              788888774

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=88.52  E-value=0.51  Score=48.22  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=27.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||.+|+-+|.++++.+              .+|+|++..
T Consensus        14 ~DVlVVG~G~AGl~AAl~Aa~~G--------------~~V~lleK~   45 (897)
T PRK13800         14 CDVLVIGGGTAGTMAALTAAEHG--------------ANVLLLEKA   45 (897)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecc
Confidence            57999999999999999998766              788888764

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=88.50  E-value=0.57  Score=43.10  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=33.0

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||.|-.|.++|..|+..+-             .+++|++..
T Consensus        37 q~~L~~~~VlviG~GGlGs~va~~La~~Gv-------------g~i~lvD~D   75 (392)
T PRK07878         37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGV-------------GTLGIVEFD   75 (392)
T ss_pred             HHHHhcCCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCC
Confidence            345567899999999999999999998873             588898875

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=88.49  E-value=1.9  Score=36.17  Aligned_cols=84  Identities=11%  Similarity=0.077  Sum_probs=48.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-CCCCHHHHHHHHHHHHhCCCEEEeCce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SSFDDRLRHYATTQLSKSGVRLVRGIV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-~~~~~~~~~~~~~~l~~~gV~v~~~~V   90 (283)
                      +.++|+|.|-|..|..+|..|.+.+.             ..|.+.+.+ .+. |.++.  .+.++...+..++..... .
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~G~-------------~vV~vsD~~g~i~~~Gld~--~~l~~~~~~~~~~~~~~~-~   85 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEEGG-------------KVLAVSDPDGYIYDPGITT--EELINYAVALGGSARVKV-Q   85 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-------------EEEEEEcCCCcEECCCCCH--HHHHHHHHhhCCccccCc-c
Confidence            45899999999999999999998861             345555554 332 34443  233333333334432211 1


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEEcCCC
Q 023375           91 KDVDSQKLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      ..++++.+.     ..+||.++.|+..
T Consensus        86 ~~~~~~~l~-----~~~~DVlipaA~~  107 (217)
T cd05211          86 DYFPGEAIL-----GLDVDIFAPCALG  107 (217)
T ss_pred             cccCcccce-----eccccEEeecccc
Confidence            112222222     3579999998864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=88.47  E-value=2.7  Score=36.83  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=49.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      ..++++|+|+|-++-.++..|++.+.             .+|+++.+..       +-.+.+.+.+.+.+..+.....  
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~-------------~~i~V~NRt~-------~ra~~La~~~~~~~~~~~~~~~--  182 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGA-------------KRITVVNRTR-------ERAEELADLFGELGAAVEAAAL--  182 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEeCCH-------HHHHHHHHHhhhcccccccccc--
Confidence            35789999999999999999998873             6899997642       2244455556665541111011  


Q ss_pred             EeCCeEEEcCCcEE-EeeEEEEcCCCC
Q 023375           93 VDSQKLILNDGTEV-PYGLLVWSTGVG  118 (283)
Q Consensus        93 v~~~~v~~~~g~~i-~~d~vi~a~G~~  118 (283)
                              .+-+.. .+|.+|-||..-
T Consensus       183 --------~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         183 --------ADLEGLEEADLLINATPVG  201 (283)
T ss_pred             --------cccccccccCEEEECCCCC
Confidence                    111112 699999999653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=88.45  E-value=0.73  Score=37.25  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=28.0

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||.|-.|.++|..|+..+-             .++++++..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gv-------------g~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGV-------------GNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence            58999999999999999998872             469999876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08071 L-aspartate oxidase; Provisional

Probab=88.40  E-value=0.45  Score=45.32  Aligned_cols=31  Identities=19%  Similarity=0.412  Sum_probs=26.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||+|.+|+-+|.++++ +              .+|+|++..
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g--------------~~V~lveK~   34 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-E--------------YNVIIITKK   34 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-C--------------CCEEEEecc
Confidence            479999999999999999875 4              788888764

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=88.38  E-value=0.64  Score=43.17  Aligned_cols=37  Identities=16%  Similarity=0.295  Sum_probs=28.9

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||+|..|+|++..|+..+-.        .++..++++++..
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~--------~g~~G~I~IvD~D   37 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVG--------TGESGEITVTDMD   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCC--------cCCCCeEEEECCC
Confidence            589999999999999999988720        0112589999875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=88.29  E-value=0.51  Score=45.55  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=28.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .-.|||||+| .|+.+|.+.++.+              .+|.|||+.
T Consensus        16 e~DvvvvG~G-~G~~aA~~a~~~G--------------~~v~v~Ek~   47 (564)
T PRK12845         16 TVDLLVVGSG-TGMAAALAAHELG--------------LSVLIVEKS   47 (564)
T ss_pred             eeCEEEECCc-HHHHHHHHHHHCC--------------CcEEEEecC
Confidence            3589999999 8999999999877              899999875

>PRK06153 hypothetical protein; Provisional

Probab=88.28  E-value=0.69  Score=42.14  Aligned_cols=164  Identities=16%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC-----CC--------CCH--HHHHH
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----SS--------FDD--RLRHY   73 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l-----~~--------~~~--~~~~~   73 (283)
                      +++-+.++|+|||.|-+|..++..|++.+-             .+++|++...+.     ..        ++.  .-.+.
T Consensus       171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-------------geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVev  237 (393)
T PRK06153        171 SAKLEGQRIAIIGLGGTGSYILDLVAKTPV-------------REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDY  237 (393)
T ss_pred             HHHHhhCcEEEEcCCccHHHHHHHHHHcCC-------------CEEEEECCCEecccccccccccCCHhHcCCcchHHHH
Confidence            456677899999999999999999999873             689999875221     11        111  22334


Q ss_pred             HHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCch-----hhhccCCCCCCCC-cccc-CCC----c
Q 023375           74 ATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-----LVKSLDLPKSPGG-RIGI-DEW----L  142 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~-----~~~~~~l~~~~~g-~i~V-d~~----l  142 (283)
                      +.+.+.+.+.++..- ...++++.+.    .--.+|.||-|+......     ++...+++.=.-| .+.+ +..    +
T Consensus       238 aa~rl~~in~~I~~~-~~~I~~~n~~----~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~~~g~l~G~~  312 (393)
T PRK06153        238 FKSRYSNMRRGIVPH-PEYIDEDNVD----ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLELSNGSLGGIL  312 (393)
T ss_pred             HHHHHHHhCCeEEEE-eecCCHHHHH----HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecceecCCCcCcEE
Confidence            555566555333210 1112222211    112489999999865542     2222333310001 0111 111    1


Q ss_pred             c----cCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhh
Q 023375          143 R----VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA  192 (283)
Q Consensus       143 ~----~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~  192 (283)
                      |    +++.++..  -+.+.+.++....-.....|.|...|-.|+-.+.++-+.
T Consensus       313 Rvt~~~p~~~~~~--~~~~s~~~~~~~~~Y~~niQiaelNalnA~lavikwKk~  364 (393)
T PRK06153        313 RVTLSTPDKRDHV--DGRLPFSDDDDNDVYSSNIQIAELNALNAALAVIKWKKL  364 (393)
T ss_pred             EEEEecCCccccc--cccCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            1    11122211  233333322222234557888888888888777776553

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.26  E-value=0.51  Score=46.91  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=31.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..++|.|||+|..|..+|..++..+              .+|++++.+
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~G--------------~~V~l~d~~  345 (715)
T PRK11730        311 KPVKQAAVLGAGIMGGGIAYQSASKG--------------VPVIMKDIN  345 (715)
T ss_pred             cccceEEEECCchhHHHHHHHHHhCC--------------CeEEEEeCC
Confidence            34578999999999999999999887              999999886

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=88.20  E-value=4.7  Score=38.30  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHH-hCCCEEEeC-ceEEEeCC---e--EE---EcCCc--EEEeeEEEEcCCCCCchhhhccCCC
Q 023375           68 DRLRHYATTQLS-KSGVRLVRG-IVKDVDSQ---K--LI---LNDGT--EVPYGLLVWSTGVGPSTLVKSLDLP  129 (283)
Q Consensus        68 ~~~~~~~~~~l~-~~gV~v~~~-~V~~v~~~---~--v~---~~~g~--~i~~d~vi~a~G~~~~~~~~~~~l~  129 (283)
                      ..+.+.+.+.+. ..|++++++ +|++++.+   .  +.   +.+++  ++.+|.||+|+|.....+.+.+|++
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~  257 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP  257 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence            355566666665 458999999 89888532   2  33   23342  6899999999999888888777764

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.14  E-value=0.56  Score=45.42  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      -.|+|||||.+|+-+|.++++.+
T Consensus         6 ~DVlVVG~G~AGl~AA~~Aa~~G   28 (577)
T PRK06069          6 YDVVIVGSGLAGLRAAVAAAERS   28 (577)
T ss_pred             cCEEEECccHHHHHHHHHHHHhC
Confidence            36999999999999999998764

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=88.09  E-value=0.53  Score=45.27  Aligned_cols=38  Identities=34%  Similarity=0.473  Sum_probs=31.8

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +....-.++|||||-+|+-+|..|++.-             ..+|.|+|++
T Consensus        53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~-------------~~~VLLLEaG   90 (623)
T KOG1238|consen   53 ELDSSYDYIVVGGGTAGCVLAARLSENP-------------NWSVLLLEAG   90 (623)
T ss_pred             ccccCCCEEEECCCchhHHHHHhhccCC-------------CceEEEEecC
Confidence            3455678999999999999999999753             2789999986

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=87.93  E-value=1.1  Score=40.15  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=29.7

Q ss_pred             ccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++.+|.|||+ |..|..+|..|...+-.       ......++.|++..
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~-------~~~~~~el~L~Di~   42 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMF-------GPDQPVILQLLELP   42 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccc-------CCCCceEEEEEecC
Confidence            3579999998 99999999988754411       00122589999875

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05442 malate dehydrogenase; Provisional

Probab=87.88  E-value=2  Score=38.51  Aligned_cols=42  Identities=17%  Similarity=0.171  Sum_probs=30.0

Q ss_pred             cccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++.+|.|||+ |..|..+|..|...+-.   .    .....++.|++..
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~---~----~~~~~el~LiDi~   44 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDML---G----KDQPVILQLLEIP   44 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhc---C----CCCccEEEEEecC
Confidence            45689999998 99999999988754310   0    0112489999874

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=87.61  E-value=1.8  Score=37.37  Aligned_cols=85  Identities=18%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEe
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR   87 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~   87 (283)
                      ++.....+|.|||+|..|+.+|..+...+-.            .++.|++-. +.+..   ++    .+ | .+|-.|..
T Consensus        15 ~~~~~~~KItVVG~G~VGmAca~siL~k~La------------del~lvDv~~dklkG---E~----MD-L-qH~s~f~~   73 (332)
T KOG1495|consen   15 EKEFKHNKITVVGVGQVGMACAISILLKGLA------------DELVLVDVNEDKLKG---EM----MD-L-QHGSAFLS   73 (332)
T ss_pred             cccccCceEEEEccchHHHHHHHHHHHhhhh------------hceEEEecCcchhhh---hh----hh-h-cccccccc
Confidence            3334467999999999999999988755422            688888765 32221   11    11 0 12333433


Q ss_pred             C-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           88 G-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        88 ~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      . +|..-.+-.+      +-..+.||+++|.++.
T Consensus        74 ~~~V~~~~Dy~~------sa~S~lvIiTAGarq~  101 (332)
T KOG1495|consen   74 TPNVVASKDYSV------SANSKLVIITAGARQS  101 (332)
T ss_pred             CCceEecCcccc------cCCCcEEEEecCCCCC
Confidence            3 3321111111      2347789999998877

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=87.57  E-value=0.76  Score=40.40  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||+|..|.|++..|+..+-             .++++++..
T Consensus         1 kVlVVGaGGlG~eilknLal~Gv-------------g~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGF-------------RNIHVIDMD   32 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCC
Confidence            58999999999999999998873             688998875

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=87.53  E-value=0.63  Score=43.01  Aligned_cols=46  Identities=26%  Similarity=0.286  Sum_probs=38.0

Q ss_pred             ccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          135 RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       135 ~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      ++.+|+.+.+ +.+++|++||+|-+         ..-...|...|-.+|+.|.+..
T Consensus       438 ri~~d~~~~t-~i~gLy~aGdGAG~---------argI~~Aaa~Gi~~A~~i~~k~  483 (486)
T COG2509         438 RIKVDEDLST-SIKGLYPAGDGAGL---------ARGIVSAAADGIKAAEGIARKY  483 (486)
T ss_pred             eEeeccccee-eecceEEccccccc---------cchhHHHhhhhHHHHHHHHHHh
Confidence            6888988777 99999999999954         5556778899999999887653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=87.46  E-value=0.83  Score=40.05  Aligned_cols=31  Identities=26%  Similarity=0.393  Sum_probs=27.9

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|.|||+|..|.-+|..|++.+              .+|+++.+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g--------------~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG--------------HDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            6999999999999999999876              899999763

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=87.37  E-value=1.1  Score=41.86  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=21.4

Q ss_pred             ccCeEEEEcc-CcHHHHHHHHHHHh
Q 023375           13 RLLHCVVVGG-GPTGVEFSGELSDF   36 (283)
Q Consensus        13 ~~~~vvVvGg-G~~Gve~A~~L~~~   36 (283)
                      ++.+|.|||+ |..|..+|..|...
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhc
Confidence            4679999999 99999999999864

>PRK00536 speE spermidine synthase; Provisional

Probab=87.33  E-value=1.1  Score=38.65  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=25.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++++|+|||||..|.  |.|+.+..              .+|+++|-.
T Consensus        71 ~~pk~VLIiGGGDGg~--~REvLkh~--------------~~v~mVeID  103 (262)
T PRK00536         71 KELKEVLIVDGFDLEL--AHQLFKYD--------------THVDFVQAD  103 (262)
T ss_pred             CCCCeEEEEcCCchHH--HHHHHCcC--------------CeeEEEECC
Confidence            4678999999999884  67776542              489999643

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=87.33  E-value=0.64  Score=44.79  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=29.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...|+|||||.+|+-+|.++++.+              .+|.|++..
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~g--------------~~V~l~~K~   38 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEAG--------------LKVALLSKA   38 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcC--------------CcEEEEEcc
Confidence            358999999999999999999987              788888764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=87.32  E-value=0.89  Score=39.87  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=29.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||+|..|..+|..++..+              .+|++++.+
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~G--------------~~V~l~d~~   35 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFARTG--------------YDVTIVDVS   35 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhcC--------------CeEEEEeCC
Confidence            368999999999999999999876              899999875

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=87.17  E-value=1.9  Score=36.49  Aligned_cols=38  Identities=13%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +.++|+|+|+|-+|..+|..|.+.+-.           ..+|+++++..
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~-----------~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAK-----------PENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcC-----------cceEEEEeCCC
Confidence            346999999999999999999876510           13799999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=87.14  E-value=0.85  Score=40.18  Aligned_cols=32  Identities=22%  Similarity=0.623  Sum_probs=28.5

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||+|-.|.++|..|+.++-             .++++++.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGV-------------g~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGV-------------RHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCC
Confidence            58999999999999999999883             688998865

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=87.03  E-value=0.6  Score=46.55  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=31.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..++|.|||+|..|..+|..++..+              .+|++++.+
T Consensus       333 ~~i~~v~ViGaG~MG~gIA~~~a~~G--------------~~V~l~d~~  367 (737)
T TIGR02441       333 RPVKTLAVLGAGLMGAGIAQVSVDKG--------------LKTVLKDAT  367 (737)
T ss_pred             CcccEEEEECCCHhHHHHHHHHHhCC--------------CcEEEecCC
Confidence            45678999999999999999999877              999999886

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=87.02  E-value=0.35  Score=45.65  Aligned_cols=36  Identities=22%  Similarity=0.435  Sum_probs=31.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL   63 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l   63 (283)
                      ...|+|||||.+|.-+|.-.+.++              .++.|+|.+++.
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRG--------------LktaLVE~~DF~  102 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRG--------------LKTALVEAGDFA  102 (680)
T ss_pred             cccEEEECCCccCcceeehhhccc--------------ceeEEEeccccc
Confidence            368999999999999999988877              999999987664

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.00  E-value=0.96  Score=39.66  Aligned_cols=33  Identities=18%  Similarity=0.157  Sum_probs=29.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||+|..|..+|..|+..+              .+|++++.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G--------------~~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAG--------------YDVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            368999999999999999999876              899999875

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=86.99  E-value=0.89  Score=39.79  Aligned_cols=39  Identities=18%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      ..+|+|||+|.+|+..|.+|.+.....       ..+..+|++++.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~-------~ip~~~vtv~~D   41 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSV-------LIPVAKVTVISD   41 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhc-------cCCcceEEEecC
Confidence            468999999999999999998865211       123488999865

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=86.86  E-value=0.84  Score=41.70  Aligned_cols=39  Identities=10%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||.|-.|.++|..|+..+-             .++++++..
T Consensus       130 q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-------------g~i~lvD~d  168 (376)
T PRK08762        130 QRRLLEARVLLIGAGGLGSPAALYLAAAGV-------------GTLGIVDHD  168 (376)
T ss_pred             HHHHhcCcEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence            455677899999999999999999998873             589999876

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=86.74  E-value=1.4  Score=34.08  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC
Q 023375           17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS   64 (283)
Q Consensus        17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~   64 (283)
                      ++|+|+|+.+..+|..+...+              .+|++++.. +.+|
T Consensus         1 L~I~GaG~va~al~~la~~lg--------------~~v~v~d~r~e~~~   35 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLG--------------FRVTVVDPRPERFP   35 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCT--------------EEEEEEES-CCC-T
T ss_pred             CEEEeCcHHHHHHHHHHHhCC--------------CEEEEEcCCccccC
Confidence            589999999999999999887              999999986 4444

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=86.62  E-value=1.3  Score=35.63  Aligned_cols=34  Identities=24%  Similarity=0.197  Sum_probs=28.7

Q ss_pred             ccCeEEEEccCc-HHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGP-TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~-~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++++|||+|- .|..+|..|...+              .+|+++++.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g--------------~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRN--------------ATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCC--------------CEEEEEECC
Confidence            458999999997 4888999998876              789999864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK09077 L-aspartate oxidase; Provisional

Probab=86.55  E-value=0.74  Score=44.16  Aligned_cols=30  Identities=17%  Similarity=0.504  Sum_probs=0.0

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||+|.+|+-+|.++++.               .+|+|+++.
T Consensus        10 DVlVVG~G~AGl~AA~~aa~~---------------~~VilveK~   39 (536)
T PRK09077         10 DVLIIGSGAAGLSLALRLAEH---------------RRVAVLSKG   39 (536)
T ss_pred             CEEEECchHHHHHHHHHHHHC---------------CCEEEEecc

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=86.49  E-value=0.6  Score=39.24  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=32.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL   63 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l   63 (283)
                      ...++|.|||+|..|.-+|.-.+..+              ..|.|++++ +.|
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg--------------~~V~l~d~~~~aL   47 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSG--------------LNVWLVDANEDAL   47 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcC--------------CceEEecCCHHHH
Confidence            45579999999999999999988877              999999987 544

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=86.37  E-value=1.2  Score=39.19  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=29.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||+|..|..+|..|+..+              .+|++++++
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G--------------~~V~~~d~~   36 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAG--------------MDVWLLDSD   36 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcC--------------CeEEEEeCC
Confidence            368999999999999999999876              899999876

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.27  E-value=0.77  Score=45.63  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=30.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHH-HhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELS-DFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~-~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..++|.|||+|..|..+|..++ ..+              .+|++++.+
T Consensus       307 ~~i~~v~ViGaG~mG~giA~~~a~~~G--------------~~V~l~d~~  342 (708)
T PRK11154        307 RPVNKVGVLGGGLMGGGIAYVTATKAG--------------LPVRIKDIN  342 (708)
T ss_pred             CcccEEEEECCchhhHHHHHHHHHHcC--------------CeEEEEeCC
Confidence            35679999999999999999998 556              999999886

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=85.98  E-value=1.7  Score=42.06  Aligned_cols=58  Identities=19%  Similarity=0.131  Sum_probs=38.5

Q ss_pred             CCccccCCCcccCCCCCEEEeccccccCcCCCCcCC-CcchHHHHHHHHHHHHHHHHHhh
Q 023375          133 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       133 ~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~-p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .|.+.||...++.+.|++||+|+|+... ..|...+ -.....|.-.|+.+++++...++
T Consensus       346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~  404 (566)
T PRK06452        346 MGGIDVDIDGRNPDIVGLFSAGEAACVS-VHGANRLGSNSLLDTLVFGQVTGRTVVQFLK  404 (566)
T ss_pred             cCCeEECCCCCcCCcCCeEecccccccC-CCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            3678888888874599999999997410 1121111 11345677889999998877654

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.98  E-value=2.4  Score=39.62  Aligned_cols=72  Identities=22%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh--CCCEEEeC--c
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK--SGVRLVRG--I   89 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~--~gV~v~~~--~   89 (283)
                      .-.|+|+|-|-+|+.+|..|.+.+              .+|+..+.....    + .    .+.|++  .||++..+  .
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G--------------~~v~~~D~~~~~----~-~----~~~l~~~~~g~~~~~~~~~   62 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQG--------------IPFAVMDSREQP----P-G----LDTLAREFPDVELRCGGFD   62 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCC--------------CeEEEEeCCCCc----h-h----HHHHHhhcCCcEEEeCCCC
Confidence            357999999999999999998887              899998865311    1 1    122555  38887653  1


Q ss_pred             eEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           90 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        90 V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ...+            -.+|.||.++|..+.
T Consensus        63 ~~~~------------~~~d~vV~sp~i~~~   81 (448)
T PRK03803         63 CELL------------VQASEIIISPGLALD   81 (448)
T ss_pred             hHHh------------cCCCEEEECCCCCCC
Confidence            1111            126777777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
4g9k_A	471	Structure Of The Ndi1 Protein From Saccharomyces Ce		6e-25
4g6g_A	502	Crystal Structure Of Ndh With Trt Length = 502		6e-25
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		1e-05
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		1e-05
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		6e-05
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		1e-04
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		1e-04
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		1e-04
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		1e-04
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		2e-04
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		4e-04
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		7e-04

>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces Cerevisiae Length = 471

Iteration: 1
 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 157/296 (53%), Gaps = 31/296 (10%)
Query: 8   EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LSSF 66
           + E+ RLL  VVVGGGPTGVE +GEL D++ +D+R+    + + + + L+EA  I L+ F
Sbjct: 180 DPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMF 239
Query: 67  DDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------VPYGLLVWSTGV 117
           + +L  YA + L  + +++ +R  V  V+ ++L+     E        +PYG L+W+TG 
Sbjct: 240 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 299
Query: 118 GPSTLVKSL--DLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 173
               ++  L   +P+    +  + ++++L+V    ++FA+GD +          LP  AQ
Sbjct: 300 KARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQ 352
Query: 174 VAERQGKYLFSLLNRIGKAGGGRAN--SAKD-----MELGD--PFVYRHLGSMATIGRYK 224
           VA ++ +YL    +++ +    + N  S KD      E  +  PF Y  LG++A +G  +
Sbjct: 353 VAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSER 412
Query: 225 ALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 280
           A+  +R  K +   +  G +++ +WR  YL+ ++S R+R  V  +W     F RD 
Sbjct: 413 AIATIRSGKRT-FYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDF 467

>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt Length = 502

Iteration: 1
 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 157/296 (53%), Gaps = 31/296 (10%)
Query: 8   EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LSSF 66
           + E+ RLL  VVVGGGPTGVE +GEL D++ +D+R+    + + + + L+EA  I L+ F
Sbjct: 211 DPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMF 270
Query: 67  DDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------VPYGLLVWSTGV 117
           + +L  YA + L  + +++ +R  V  V+ ++L+     E        +PYG L+W+TG 
Sbjct: 271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330
Query: 118 GPSTLVKSL--DLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 173
               ++  L   +P+    +  + ++++L+V    ++FA+GD +          LP  AQ
Sbjct: 331 KARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQ 383
Query: 174 VAERQGKYLFSLLNRIGKAGGGRAN--SAKD-----MELGD--PFVYRHLGSMATIGRYK 224
           VA ++ +YL    +++ +    + N  S KD      E  +  PF Y  LG++A +G  +
Sbjct: 384 VAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSER 443
Query: 225 ALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 280
           A+  +R  K +   +  G +++ +WR  YL+ ++S R+R  V  +W     F RD 
Sbjct: 444 AIATIRSGKRT-FYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDF 498

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 8   EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 67
           E+   R+L    VGGG   VEF+G         +   Y     Y+ +     + IL  FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 68  DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 121
             +R   T QL  +G+R+        I K+ D S  +  NDGTE  Y  ++ + G  P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 122 LVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGD 155
               LD   +     G + +D + +  SV +++A+GD
Sbjct: 312 QALQLDKAGVRTGKNGAVQVDAYSKT-SVDNIYAIGD 347

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 8   EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 67
           E+   R+L    VGGG   VEF+G         +   Y     Y+ +     + IL  FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 68  DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 121
             +R   T QL  +G+R+        I K+ D S  +  NDGTE  Y  ++ + G  P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 122 LVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGD 155
               LD   +     G + +D + +  SV +++A+GD
Sbjct: 312 QALQLDKAGVRTGKNGAVQVDAYSKT-SVDNIYAIGD 347

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 38/178 (21%)
Query: 3   LAGI----SEEEKSRLL--------HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 50
           LAG+    ++E+  RL+        + VV+GGG  G+E +  L+ F              
Sbjct: 129 LAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKF-------------- 174
Query: 51  YIHVTLIEA-NEILSSF-DDRLRHYATTQLSKSGVRLVRGIVKDV---DSQKLI---LND 102
            ++VTL+EA   +L+    + L  +   +    GV L  G   D    D  K+    + D
Sbjct: 175 GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQD 234
Query: 103 GTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR-IGIDEWLRVPSVQDVFAVGDCSGY 159
           G+ +P  +++   G+ P   V +L    + GG  + +DE+ R  S+ DV+A+GDC+ +
Sbjct: 235 GSVIPADIVIVGIGIVPC--VGALISAGASGGNGVDVDEFCRT-SLTDVYAIGDCAAH 289

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
           + VGGG   VEF+G  + +  +D +           VTL    E IL  FD  LR   T 
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 240
Query: 77  QLSKSGVRLVR-----GIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
           QL+ +G++++       +  + D S+ +    G ++ + L++ + G  P T  K L L  
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 298
Query: 131 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
           +      G + +DE+ R  +V +++A+GD +  +  T   +  A A V
Sbjct: 299 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 345

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
           + VGGG   VEF+G  + +  +D +           VTL    E IL  FD  LR   T 
Sbjct: 191 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 239
Query: 77  QLSKSGVRLVR-----GIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
           QL+ +G++++       +  + D S+ +    G ++ + L++ + G  P T  K L L  
Sbjct: 240 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 297
Query: 131 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
           +      G + +DE+ R  +V +++A+GD +  +  T   +  A A V
Sbjct: 298 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 344

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
           + VGGG   VEF+G  + +  +D +           VTL    E IL  FD  LR   T 
Sbjct: 193 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 241
Query: 77  QLSKSGVRLVR-----GIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
           QL+ +G++++       +  + D S+ +    G ++ + L++ + G  P T  K L L  
Sbjct: 242 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 299
Query: 131 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
           +      G + +DE+ R  +V +++A+GD +  +  T   +  A A V
Sbjct: 300 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 346

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
           + VGGG   VEF+G  + +  +D +           VTL    E IL  FD  LR   T 
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 240
Query: 77  QLSKSGVRLVR-----GIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
           QL+ +G++++       +  + D S+ +    G ++ + L++ + G  P T  K L L  
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 298
Query: 131 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
           +      G + +DE+ R  +V +++A+GD +  +  T   +  A A V
Sbjct: 299 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 345

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 28/188 (14%)
Query: 5   GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEIL 63
            IS  E S+    V+VGGG  G+E +  L+D                I  T++E A++I+
Sbjct: 153 AISAGEVSK---AVIVGGGFIGLEMAVSLADMW-------------GIDTTVVELADQIM 196
Query: 64  SSFDDR-----LRH--YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTG 116
             F  +     LRH       +  +G ++VR +  +      ++ D   +   L++ + G
Sbjct: 197 PGFTSKSLSQMLRHDLEKNDVVVHTGEKVVR-LEGENGKVARVITDKRTLDADLVILAAG 255
Query: 117 VGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE-STGKTVLPALAQV 174
           V P+T L +   L   P G I +D  +R  S  D+FA GDC       TGK     L  +
Sbjct: 256 VSPNTQLARDAGLELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNLVTGKPGFFPLGSM 314
Query: 175 AERQGKYL 182
           A RQG+ +
Sbjct: 315 ANRQGRVI 322

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 36/186 (19%)
Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYA 74
           H VVVGGG  G+E                 ++ K    V+++EA E IL ++D  L    
Sbjct: 173 HLVVVGGGYIGLELG--------------IAYRKLGAQVSVVEARERILPTYDSELTAPV 218
Query: 75  TTQLSKSGVRLVRG-IVKDVDSQKLILNDGT----EVPYGLLVWSTGVGPSTL---VKSL 126
              L K G+ L  G  V+  ++  L+ NDG      +    ++ + G  P T    ++ L
Sbjct: 219 AESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECL 278
Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 186
           DL K  G  I IDE  +  S+ +V+A+GD +G          P LA  A  QG+ +  ++
Sbjct: 279 DL-KMNGAAIAIDERCQT-SMHNVWAIGDVAGE---------PMLAHRAMAQGEMVAEII 327
Query: 187 NRIGKA 192
              GKA
Sbjct: 328 A--GKA 331

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 53  HVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILND-GTEVPYGLL 111
           HV LI    +    D+ L +     L ++GV+        ++S+ L  N+ G     G +
Sbjct: 168 HVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFF------LNSELLEANEEGVLTNSGFI 221
Query: 112 VWSTGVGPSTLVKSLDLPKSPGGRIG----IDEWLRVPSVQDVFAVGDCSGYLESTGKTV 167
                +    +V ++DL +  G   G    ID+  R  S +DV+A+GDC+ Y       +
Sbjct: 222 EGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRT-SAKDVYAIGDCAEY-----SGI 275
Query: 168 LPALAQVAERQGKYLFSLL 186
           +   A+ A  Q + L  +L
Sbjct: 276 IAGTAKAAMEQARVLADIL 294

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	1e-21
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	6e-04
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	6e-21
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	6e-21
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	1e-19
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	1e-19
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	3e-19
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	6e-19
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	5e-17
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	6e-17
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	8e-17
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	3e-16
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	3e-16
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-16
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	4e-16
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	5e-16
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	2e-15
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	9e-15
4dna_A	463	Probable glutathione reductase; structural genomic	3e-14
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	2e-13
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	4e-13
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	5e-12
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-11
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	1e-11
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-11
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	3e-11
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	4e-11
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	8e-11
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	1e-10
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	1e-10
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	3e-09
4fk1_A	304	Putative thioredoxin reductase; structural genomic	6e-09
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	7e-08
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	1e-07
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-07
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	5e-07
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	7e-07
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-06
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	3e-06
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	5e-06
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	1e-05
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-05
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-05
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	2e-05
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	3e-05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-04
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	2e-04
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-04

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 92.5 bits (230), Expect = 1e-21
 Identities = 40/280 (14%), Positives = 80/280 (28%), Gaps = 41/280 (14%)

Query: 19  VVGGGPTGVEFSG---ELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR----LR 71
           +V G   G    G   E +  I+    ++          T I +   +     +     +
Sbjct: 153 IVIGAMAGASCFGPAYEYA-MIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSK 211

Query: 72  HYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGT---------EVPYGLLVWSTGVGPST 121
              T  L + G+       V  V+  K+ +              +P    +         
Sbjct: 212 GILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVP 271

Query: 122 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK---TVLPALAQVAERQ 178
            V  ++   +PGG + +DE  R     ++FA G              T  P    + E  
Sbjct: 272 AVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESM 331

Query: 179 GKYL-FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKA-LVDLRQNKESK 236
                 ++   +           +  +        +  + A +G   A  + L Q K  K
Sbjct: 332 VSAAVHNIKADL-----------EGRKGEQTMGTWNAVAFADMGDRGAAFIALPQLKPRK 380

Query: 237 GLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVF 276
                   ++  W   +L +V  +   F   +    +  F
Sbjct: 381 ----VDVFAYGRW--VHLAKVA-FEKYFIRKMKMGVSEPF 413

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 33/119 (27%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------- 62
           H V++G G  G+  + E+ + +                VTLI AN+              
Sbjct: 6   HVVILGAGTGGMPAAYEMKEALGSGHE-----------VTLISANDYFQFVPSNPWVGVG 54

Query: 63  LSSFDD---RLRHYATTQLSKSGVRLVRGIVKDVD--SQKLILNDGTEVPYGLLVWSTG 116
               DD    +RHY    + + G+  +    + +D  +Q + L DG  V Y  L+ +TG
Sbjct: 55  WKERDDIAFPIRHY----VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATG 109

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 90.5 bits (225), Expect = 6e-21
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%)

Query: 8   EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 67
              K ++    V            E+S  ++    ++   + D +HVT+    E LS   
Sbjct: 160 HNPKPKVPENFVPNADSACEGPVFEMS-LMLHGYFKKK-GMLDKVHVTVFSPGEYLSDLS 217

Query: 68  DRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK-S 125
              R    +  ++ G++LV    +K++   +++   G  +P  + +       +  +K S
Sbjct: 218 PNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNS 277

Query: 126 LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
                  GG I  D  +      +V+AVGD +    +  K        +A   G+  
Sbjct: 278 TPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSM--TVPKL-----GYLAVMTGRIA 327

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 90.6 bits (226), Expect = 6e-21
 Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 21/170 (12%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHY 73
             +VVG G   +E    + +    R            +H TLI  +++I    D  +   
Sbjct: 150 KVLVVGAGYVSLE----VLENLYERG-----------LHPTLIHRSDKINKLMDADMNQP 194

Query: 74  ATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKS 131
              +L K  +       +  ++  ++    G    Y +++   G  P++  ++S ++   
Sbjct: 195 ILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLD 254

Query: 132 PGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGK 180
             G I +++     +V +++A+GD  + +           LA  A R   
Sbjct: 255 RKGFIPVNDKFET-NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAAS 303

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 27/175 (15%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHY 73
           H  V+GGG  GVE    + +    R            I VTL+E AN+++   D  +  Y
Sbjct: 189 HATVIGGGFIGVE----MVENLRERG-----------IEVTLVEMANQVMPPIDYEMAAY 233

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLD 127
               +    V L     V  + ++     + L  G+ +   +L+ + GV P + L K   
Sbjct: 234 VHEHMKNHDVELVFEDGVDALEEN--GAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAG 291

Query: 128 LPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGKY 181
           L     G I ++E  +  S   ++A+GD        T    +  LA  A RQG+ 
Sbjct: 292 LALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRM 345

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 29/177 (16%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDR-LRHY 73
             V+VGGG  G+E +  L+D                I  T++E A++I+  F  + L   
Sbjct: 161 KAVIVGGGFIGLEMAVSLAD-------------MWGIDTTVVELADQIMPGFTSKSLSQM 207

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLD 127
               L K+ V +     V  +  +      ++ D   +   L++ + GV P+T L +   
Sbjct: 208 LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAG 267

Query: 128 LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES----TGKTVLPALAQVAERQGK 180
           L   P G I +D  +R  S  D+FA GDC          TGK     L  +A RQG+
Sbjct: 268 LELDPRGAIIVDTRMRT-SDPDIFAGGDCV---TIPNLVTGKPGFFPLGSMANRQGR 320

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 26/173 (15%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHY 73
              ++GGG  G+E    +++ F+                V +IE  + I + +D  +  Y
Sbjct: 188 DVTIIGGGAIGLE----MAETFVELG-----------KKVRMIERNDHIGTIYDGDMAEY 232

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLD 127
              +  K  + +     V+    + +  + +  D       L++ S GV P+T  ++  +
Sbjct: 233 IYKEADKHHIEILTNENVKAFKGN-ERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTN 291

Query: 128 LPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQG 179
           +  +  G I ++ +++  +VQDV+A GDC + Y           +   A +QG
Sbjct: 292 IRTNHKGAIEVNAYMQT-NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQG 343

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 79.5 bits (197), Expect = 5e-17
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 27/176 (15%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFDDRLRH 72
              ++G G  G E    L++ +  ++            +V LI+    +L   FD     
Sbjct: 151 TITIIGSGYIGAE----LAEAYSNQN-----------YNVNLIDGHERVLYKYFDKEFTD 195

Query: 73  YATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSL 126
                    GV L     V    +  D       DG E+   + +   G  P+T L+K  
Sbjct: 196 ILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKG- 254

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGKY 181
            +     G I  DE++   S +D+FA GD  + +   T       LA  A RQG+ 
Sbjct: 255 KVAMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRL 309

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 79.6 bits (197), Expect = 6e-17
 Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 44/194 (22%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHY 73
           H  VVGGG  G+E    + +                 I  TL+E A+++++  D  +  +
Sbjct: 153 HATVVGGGFIGLE----MMESLHHLG-----------IKTTLLELADQVMTPVDREMAGF 197

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQ-------------------KLILNDGTEVPYG 109
           A   +   GV L     +  +   V +                     L L++G  +   
Sbjct: 198 AHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETD 257

Query: 110 LLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTV 167
           LL+ + GV P T L +   L     G I ++  ++  S   ++AVGD        TG+  
Sbjct: 258 LLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQAC 316

Query: 168 LPALAQVAERQGKY 181
           L  LA  A RQG+ 
Sbjct: 317 LVPLAGPANRQGRM 330

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 78.7 bits (195), Expect = 8e-17
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 28/174 (16%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFDDRLRH 72
           + V++GGG  G+E    +++ F  +             +VT+I     +L  SFD  +  
Sbjct: 150 NVVIIGGGYIGIE----MAEAFAAQG-----------KNVTMIVRGERVLRRSFDKEVTD 194

Query: 73  YATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSL 126
               +L K  V L        I  + +  + ++ D  E    L++ +TG+ P+  L K L
Sbjct: 195 ILEEKLKK-HVNLRLQEITMKIEGE-ERVEKVVTDAGEYKAELVILATGIKPNIELAKQL 252

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQG 179
            +     G I  +E ++  SV++V+A GD        TG+ V   LA    + G
Sbjct: 253 GVRIGETGAIWTNEKMQT-SVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMG 305

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score = 77.2 bits (191), Expect = 3e-16
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 28/174 (16%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFDDRLRH 72
              VVG G  GVE    L++ F  +              V LI+  +  L+  +D  L  
Sbjct: 196 RVAVVGAGYIGVE----LAEAFQRKG-----------KEVVLIDVVDTCLAGYYDRDLTD 240

Query: 73  YATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSL 126
                + + G++L     V+ +  +    + I+ D  E    +++ + G  P+T L    
Sbjct: 241 LMAKNMEEHGIQLAFGETVKEVAGN-GKVEKIITDKNEYDVDMVILAVGFRPNTTLGNG- 298

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQG 179
            +     G   +++     S+  V+A+GDC + Y  +T  T   ALA  A R G
Sbjct: 299 KIDLFRNGAFLVNKRQET-SIPGVYAIGDCATIYDNATRDTNYIALASNAVRTG 351

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 77.1 bits (191), Expect = 3e-16
 Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 28/174 (16%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFDDRLRH 72
              V+G GP G+E      D  +                V + E    +L   FD  +  
Sbjct: 149 TVAVIGAGPIGME----AIDFLVKMK-----------KTVHVFESLENLLPKYFDKEMVA 193

Query: 73  YATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSL 126
                L K  V       V GI +   +  ++     E+     +++  + P    +   
Sbjct: 194 EVQKSLEKQAVIFHFEETVLGIEET-ANGIVLETSEQEISCDSGIFALNLHPQLAYLDK- 251

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQG 179
            + ++    I +D +L+  SV +VFA+GDC S   E   +T    L   A R G
Sbjct: 252 KIQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTG 304

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 77.2 bits (191), Expect = 3e-16
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 35/177 (19%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
           + VGGG   +EF+G  + +  R              V L    + IL  FD  LR   T 
Sbjct: 191 LCVGGGYISIEFAGIFNAYKARGG-----------QVDLAYRGDMILRGFDSELRKQLTE 239

Query: 77  QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
           QL  +G+ +        + K+ D  + +    G E  Y +++ + G  P +  ++L L K
Sbjct: 240 QLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS--QTLQLEK 297

Query: 131 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
                +  G I +D + +  +V +++A+GD       T +     L  VA  +G   
Sbjct: 298 AGVEVAKNGAIKVDAYSKT-NVDNIYAIGDV------TDR---VMLTPVAINEGAAF 344

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 77.1 bits (191), Expect = 4e-16
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 28/176 (15%)

Query: 16  HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFDDRLRH 72
           + VV+G G  G+E     ++ F                 VT+I+  +  L    D     
Sbjct: 151 NVVVIGSGYIGIE----AAEAFAKAG-----------KKVTVIDILDRPLGVYLDKEFTD 195

Query: 73  YATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSL 126
             T ++  + + +     V     D    + ++ D       L+V + GV P+T  +K  
Sbjct: 196 VLTEEMEANNITIATGETVERYEGD-GRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKG- 253

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGKY 181
            L   P G I  DE++R  S  DVFAVGD            V  ALA  A +QG++
Sbjct: 254 TLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF 308

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 76.8 bits (190), Expect = 5e-16
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 35/177 (19%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
           + VGGG   VEF+G  + +     +           VTL    N IL  FD+ +R   T 
Sbjct: 195 LTVGGGFISVEFAGIFNAYKPPGGK-----------VTLCYRNNLILRGFDETIREEVTK 243

Query: 77  QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
           QL+ +G+ ++       +  + D  K +    G  +   +++ + G  P T    L L  
Sbjct: 244 QLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT--NDLQLGN 301

Query: 131 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
                +P G + +DE+ R  +V +++A+GD       T +     L  VA  +G  L
Sbjct: 302 VGVKLTPKGGVQVDEFSRT-NVPNIYAIGDI------TDR---LMLTPVAINEGAAL 348

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 37/176 (21%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
           V+VGGG  GVEF+                 VK     TL+   + IL +FD  LR     
Sbjct: 195 VIVGGGYIGVEFANIFHGL----------GVK----TTLLHRGDLILRNFDYDLRQLLND 240

Query: 77  QLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK- 130
            +   G+ ++       +    +   ++L +G  +    ++ +TG  P+T    L L + 
Sbjct: 241 AMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT--TGLGLERA 298

Query: 131 ----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
               +  G + +DE +   +V  ++AVGD       TG      L  VA       
Sbjct: 299 GVKVNEFGAVVVDEKMTT-NVSHIWAVGDV------TGH---IQLTPVAIHDAMCF 344

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 72.9 bits (180), Expect = 9e-15
 Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 38/177 (21%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
            VVG G  GVE  G ++              K      L E  +  L SFD  +      
Sbjct: 171 AVVGAGYIGVELGGVINGL----------GAK----THLFEMFDAPLPSFDPMISETLVE 216

Query: 77  QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
            ++  G +L        +VK+ D    + L DG       L+W+ G  P+    +++L  
Sbjct: 217 VMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN--DNINLEA 274

Query: 131 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
                +  G I +D++    +++ ++AVGD       TG      L  VA   G+ L
Sbjct: 275 AGVKTNEKGYIVVDKYQNT-NIEGIYAVGDN------TGA---VELTPVAVAAGRRL 321

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 71.4 bits (176), Expect = 3e-14
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 38/177 (21%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
           ++ GGG   VEF+                 VK     TLI    EILS FD  +R     
Sbjct: 174 LIAGGGYIAVEFANIFHGL----------GVK----TTLIYRGKEILSRFDQDMRRGLHA 219

Query: 77  QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
            + + G+R++       +  D D +++       E+    ++ + G  P+T    L L  
Sbjct: 220 AMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNT--NGLGLEA 277

Query: 131 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
                +  G I +D + R  S   ++A+GD       T +     L  VA  +    
Sbjct: 278 AGVRTNELGAIIVDAFSRT-STPGIYALGDV------TDR---VQLTPVAIHEAMCF 324

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 41/179 (22%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
           VVVG G  G+E +G                 +      L+     +L  FD+ +++  T 
Sbjct: 189 VVVGAGYIGIELAGVFHGL----------GSE----THLVIRGETVLRKFDECIQNTITD 234

Query: 77  QLSKSGVRLVRG-----IVKDVDSQKL--ILNDGTEV-PYGLLVWSTGVGPSTLVKSLDL 128
              K G+ + +      + K+V++ KL   +ND   +     L+W+ G         +  
Sbjct: 235 HYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL---GMGS 291

Query: 129 PK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
                  +   +I  DE+    +V +++++GD        GK     L  VA   G+ L
Sbjct: 292 ENVGIKLNSHDQIIADEYQNT-NVPNIYSLGDV------VGK---VELTPVAIAAGRKL 340

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 67.9 bits (167), Expect = 4e-13
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 38/177 (21%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
            ++G G  G+E +G L  F            +    VT++   + +L  FD  L      
Sbjct: 170 AIIGAGYIGIELAGLLRSF----------GSE----VTVVALEDRLLFQFDPLLSATLAE 215

Query: 77  QLSKSGVRLVRG-----IVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPSTLVKSLDLPK 130
            +   G+          + +D     L+  DGT +  +  ++W+ G  P+T  + L L  
Sbjct: 216 NMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT--RDLGLEA 273

Query: 131 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
                   G +  D +    +V  V+A+GD       TG+     L  VA   G+ L
Sbjct: 274 AGIEVQSNGMVPTDAYQNT-NVPGVYALGDI------TGR---DQLTPVAIAAGRRL 320

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 64.8 bits (159), Expect = 5e-12
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 46/185 (24%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
           V+VG G   VE +G LS              K     +L+   +++L SFD  +    T 
Sbjct: 191 VIVGAGYIAVEMAGILSAL----------GSK----TSLMIRHDKVLRSFDSMISTNCTE 236

Query: 77  QLSKSGVRLVRG-----IVKDVDSQKLILNDGTE---------VPYGLLVWSTGVGPSTL 122
           +L  +GV +++      + K +   ++ +                   L+W+ G  P+T 
Sbjct: 237 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT- 295

Query: 123 VKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 177
            K L L K        G I +DE+    +V+ ++AVGD        GK     L  VA  
Sbjct: 296 -KDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDV------CGK---ALLTPVAIA 344

Query: 178 QGKYL 182
            G+ L
Sbjct: 345 AGRKL 349

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 40/180 (22%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
           +VVG G  G+E +G L               +     T++  + +L  FD ++       
Sbjct: 191 LVVGAGYIGLECAGFLKGL----------GYE----PTVMVRSIVLRGFDQQMAELVAAS 236

Query: 78  LSKSGVRLVRG-----IVKDVDSQKLI------LNDGTEVPYGLLVWSTGVGPSTLVKSL 126
           + + G+  +R      + K  D + L+        + +E  Y  ++W+ G         L
Sbjct: 237 MEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLV--DDL 294

Query: 127 DLP----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           +LP         +I +D      +V +++AVGD        GK   P L  VA   G+ L
Sbjct: 295 NLPNAGVTVQKDKIPVDSQEAT-NVANIYAVGDI-----IYGK---PELTPVAVLAGRLL 345

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 45/185 (24%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
           +VVG     +E +G L+             +     VT++  + +L  FD  + +     
Sbjct: 214 LVVGASYVALECAGFLAGI----------GLD----VTVMVRSILLRGFDQDMANKIGEH 259

Query: 78  LSKSGVRLVRG-----IVKDVDSQKLIL---------NDGTEVPYGLLVWSTGVGPSTLV 123
           + + G++ +R      + +        L          +  E  Y  ++ + G    T  
Sbjct: 260 MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT-- 317

Query: 124 KSLDLPK------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 177
           + + L           G+I + +  +  +V  ++A+GD         K     L  VA +
Sbjct: 318 RKIGLETVGVKINEKTGKIPVTDEEQ-TNVPYIYAIGDI-----LEDK---VELTPVAIQ 368

Query: 178 QGKYL 182
            G+ L
Sbjct: 369 AGRLL 373

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 54/202 (26%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
            +VG G   VE    +              +       +    N IL  FD+ + +    
Sbjct: 180 GIVGSGYIAVELINVIKRL----------GID----SYIFARGNRILRKFDESVINVLEN 225

Query: 77  QLSKSGVRL-----VRGIVKDVDSQKLI-LNDGTEV-PYGLLVWSTGVGPSTLVKSLDLP 129
            + K+ + +     V  I K  D    I L+DG     +  +++  G  P T  ++L L 
Sbjct: 226 DMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT--ENLKLE 283

Query: 130 ----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL----------------- 168
               ++    I +DE  R  SV +++AVGDC    +S     L                 
Sbjct: 284 KLNVETNNNYIVVDENQRT-SVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKEN 342

Query: 169 --------PALAQVAERQGKYL 182
                     L  VA   G+ L
Sbjct: 343 VTEDIFYNVQLTPVAINAGRLL 364

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 41/176 (23%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSH--VKDYIHVTLIEANEILSSFDDRLRHYAT 75
            V+G     +E +            Q ++    K    VT++  N +    D  +    T
Sbjct: 180 AVIGSSVVALELA------------QAFARLGSK----VTVLARNTLFFREDPAIGEAVT 223

Query: 76  TQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
                 G+ +        +        L    G      LLV +TG  P+T  +SL L  
Sbjct: 224 AAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLV-ATGRTPNT--RSLALDA 280

Query: 131 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 181
                +  G I ID+ +R  S  +++A GDC+           P    VA   G  
Sbjct: 281 AGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTD---------QPQFVYVAAAAGTR 326

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 42/182 (23%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
           +VVG     +E +G L+             +      T++  +  L  FD ++    T  
Sbjct: 189 LVVGASYVALECAGFLTGI----------GLD----TTVMMRSIPLRGFDQQMSSLVTEH 234

Query: 78  LSKSGVRLVRG-----IVKDVDSQ-KLILNDGT-----EVPYGLLVWSTGVGPSTLVKSL 126
           +   G + ++G     I K   +Q ++   D          +  ++W+ G  P T  ++L
Sbjct: 235 MESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET--RTL 292

Query: 127 DLPK------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180
           +L K          +I +D      SV  ++A+GD +      G+   P L   A + GK
Sbjct: 293 NLEKAGISTNPKNQKIIVDAQEAT-SVPHIYAIGDVAE-----GR---PELTPTAIKAGK 343

Query: 181 YL 182
            L
Sbjct: 344 LL 345

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 37/176 (21%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYA 74
           H +VVG G TG EF    ++            V     VT++   + +L   D       
Sbjct: 184 HLIVVGSGVTGAEFVDAYTEL----------GVP----VTVVASQDHVLPYEDADAALVL 229

Query: 75  TTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 129
               ++ GVRL        + +      + + DG  V     + + G  P+T    L L 
Sbjct: 230 EESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT--SGLGLE 287

Query: 130 K-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180
           +       G  + +D   R      ++A GDC+G         L  LA VA  QG+
Sbjct: 288 RVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTG---------LLPLASVAAMQGR 333

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 37/180 (20%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYA 74
             VVVGG  T VE+    +              +      ++     +    D+  R Y 
Sbjct: 216 TVVVVGGSKTAVEYGCFFNAT----------GRR----TVMLVRTEPLKLIKDNETRAYV 261

Query: 75  TTQLSKSGVRL-----VRGIVKDVDSQKLIL-----NDGTEVPYGLLVWSTGVGPST--L 122
             ++ + G+ +     V  I +D + +   +     N    +    +    G  P +  L
Sbjct: 262 LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAEL 321

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
            K L L   P G + ++E+L+  SV +V+AVGD        G    P     A + G Y 
Sbjct: 322 AKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDL------IGG---PMEMFKARKSGCYA 371

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 48/188 (25%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
           +V+G     +E +G L+                   VT++  + +L  FD ++       
Sbjct: 290 LVIGASYVALECAGFLASL----------GGD----VTVMVRSILLRGFDQQMAEKVGDY 335

Query: 78  LSKSGVRLVRG-------------IVKDVDSQKLI---LNDGT--EVPYGLLVWSTGVGP 119
           +   GV+  +                 +     L+     DG   E  +  ++++ G  P
Sbjct: 336 MENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREP 395

Query: 120 STLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
                 +            GR+   +  +  +V +V+A+GD      + GK   P L  V
Sbjct: 396 QL--SKVLCETVGVKLDKNGRVVCTDDEQT-TVSNVYAIGDI-----NAGK---PQLTPV 444

Query: 175 AERQGKYL 182
           A + G+YL
Sbjct: 445 AIQAGRYL 452

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 39/174 (22%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 75
             +++GGG  G+E +G L++                  V LI    +    D+ L +   
Sbjct: 145 EAIIIGGGFIGLELAGNLAEAGYH--------------VKLIHRGAMFLGLDEELSNMIK 190

Query: 76  TQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
             L ++GV+      +    ++      +L +   +   + + + G+ P+      DL +
Sbjct: 191 DMLEETGVKFFLNSELLEANEEG-----VLTNSGFIEGKVKICAIGIVPNV-----DLAR 240

Query: 131 SPG---GR-IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180
             G   GR I ID+  R  S +DV+A+GDC+   E +G       A+ A  Q +
Sbjct: 241 RSGIHTGRGILIDDNFRT-SAKDVYAIGDCA---EYSGIIA--GTAKAAMEQAR 288

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 27/147 (18%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
           +++           +L              V ++    +I  N       + L      +
Sbjct: 150 IIISENEDHTLHMTKL--------------VYNWSTDLVIATN------GNELSQTIMDE 189

Query: 78  LSKSGVRLVRGIVKDVDS-----QKLILNDGTEVPY-GLLVWSTGVGPSTLVKSLDLPKS 131
           LS   + ++   ++ +       +K+  + G  +   G  +  T   P+  ++ L     
Sbjct: 190 LSNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQ 249

Query: 132 PGGRIGIDEWLRVPSVQDVFAVGDCSG 158
             G   ID++ R  S ++++  G+ + 
Sbjct: 250 SNGTFVIDDFGRT-SEKNIYLAGETTT 275

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 25/149 (16%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHY 73
             +++G G  G EF+ +LS                   + ++   E +            
Sbjct: 147 RVLLLGAGLIGCEFANDLSSGGY--------------QLDVVAPCEQVMPGLLHPAAAKA 192

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLD 127
               L   GVR      +  + K  +  +  L+DG  +P  L+V + G+ P T L  +  
Sbjct: 193 VQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAG 252

Query: 128 LPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
           L  + G  I +D  LR  S  +++A+GDC
Sbjct: 253 LAVNRG--IVVDRSLRT-SHANIYALGDC 278

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 27/150 (18%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
            V+   P  +  +  L D+                                         
Sbjct: 145 GVIAASPMAIHHALMLPDW---------GET-----TFFTN-------GIVEPDADQHAL 183

Query: 78  LSKSGVRLVRGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDL---PKSP 132
           L+  GVR+    ++++     ++L DG  +    L     +  +   ++ L         
Sbjct: 184 LAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPM 243

Query: 133 GGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162
           G  I  D   +  + + +FA GD +    S
Sbjct: 244 GSTIVTDPMKQT-TARGIFACGDVARPAGS 272

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHY 73
              ++GGG  G E +  L     R  R           V  +   +        + L ++
Sbjct: 182 SITIIGGGFLGSELACALG----RKARALG------TEVIQLFPEKGNMGKILPEYLSNW 231

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKS-- 125
              ++ + GV++     V+ +        + L DG +V    +V + G+ P+  L K+  
Sbjct: 232 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGG 291

Query: 126 LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
           L++    GG   ++  L+  +  +++  GD 
Sbjct: 292 LEIDSDFGG-FRVNAELQ--ARSNIWVAGDA 319

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 25/149 (16%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHY 73
             ++VGGG  G E +           R+        + VT++EA + L       R+  +
Sbjct: 145 RLLIVGGGLIGCEVATTA--------RKL------GLSVTILEAGDELLVRVLGRRIGAW 190

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLD 127
               L++ GV++     V G   +   ++++ +DG        +   G  P+  L +   
Sbjct: 191 LRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAG 250

Query: 128 LPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
           L    G  + +D        + VFAVGD 
Sbjct: 251 LACDRG--VIVDHCGAT-LAKGVFAVGDV 276

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 37/233 (15%), Positives = 78/233 (33%), Gaps = 49/233 (21%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL--RHY 73
              ++GGG  G+E +  + D                   ++           +    R  
Sbjct: 148 KAFIIGGGILGIELAQAIIDSGTP--------------ASIGI-------ILEYPLER-- 184

Query: 74  ATTQLSKSGVRLVRGIVKD----VDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDL 128
              QL + G   ++  +      + +       G  +    ++ + GV P+   +K  ++
Sbjct: 185 ---QLDRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIRSSCVITAVGVKPNLDFIKDTEI 241

Query: 129 PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ-------VAERQGKY 181
                  I +++ +   S++D++A GD + +       +  A  Q              Y
Sbjct: 242 A--SKRGILVNDHMET-SIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDASY 298

Query: 182 LFSLLNRIGKAGGGRANSAKDMELGDP-FVYRHLGSMATIGRYKALVDLRQNK 233
              + + I K  G    S  D+E   P  V+R         +Y   + L++NK
Sbjct: 299 SEIIPSPILKVSGISIISCGDIENNKPSKVFRSTQE----DKYIVCM-LKENK 346

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 33/174 (18%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYA 74
             +VVGGG  G+E                         V ++E  + IL + D  +   A
Sbjct: 169 RLIVVGGGVIGLELGVVWHRLGAE--------------VIVLEYMDRILPTMDLEVSRAA 214

Query: 75  TTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST---LVKSL 126
                K G+ +     V  +V +    ++ L  G  +    ++ + G  P T    +++ 
Sbjct: 215 ERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENA 274

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180
            L     GRI +DE LR   V  ++A+GD        G    P LA  A  +G 
Sbjct: 275 GLSTDERGRIPVDEHLRT-RVPHIYAIGDVVR-----G----PMLAHKASEEGI 318

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 21/145 (14%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHY 73
             ++VGGG  G+E +           R         +HV+L+E    L   +    L  +
Sbjct: 147 RLLIVGGGVIGLELAATA--------RTA------GVHVSLVETQPRLMSRAAPATLADF 192

Query: 74  ATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKS 131
                +  GV L     V       ++L+DGT +   ++V   GV  +  L ++  L   
Sbjct: 193 VARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACD 252

Query: 132 PGGRIGIDEWLRVPSVQDVFAVGDC 156
            G  I +D + R  +  DV+A+GD 
Sbjct: 253 DG--IFVDAYGRT-TCPDVYALGDV 274

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 38/177 (21%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYA 74
             ++ G G  G+EF   L ++           V     VT++E     L + D  +    
Sbjct: 173 SIIIAGAGAIGMEFGYVLKNY----------GVD----VTIVEFLPRALPNEDADVSKEI 218

Query: 75  TTQLSKSGVRL-----VRGIVKDVDSQKLILN-DGTEVPYG---LLVWSTGVGPST---L 122
             Q  K GV +     V  I        + +  DG         +L  + G  P+     
Sbjct: 219 EKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQ-AIGFAPNVEGYG 277

Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 179
           +    +  +    IG+D+++R  +V  ++A+GD        G      LA VAE QG
Sbjct: 278 LDKAGVALTDRKAIGVDDYMRT-NVGHIYAIGDV------NGL---LQLAHVAEAQG 324

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 26/150 (17%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHY 73
           H VV+G G  G+EF+           R +       + V ++E    +        +  Y
Sbjct: 144 HVVVIGAGFIGLEFAATA--------RAK------GLEVDVVELAPRVMARVVTPEISSY 189

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDS-QKLILNDGTEVPYGLLVWSTGVGPST-LVKSL 126
              + S +G+R+        I  + D    ++L+DG  +P  L+V   GV P+  +  + 
Sbjct: 190 FHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAA 249

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
            LP + G  I +D+ L   S   + A+GDC
Sbjct: 250 GLPTAAG--IIVDQQLLT-SDPHISAIGDC 276

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 26/150 (17%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHY 73
           + VV+GGG  G+E +  L         +        ++VTL+EA   +      + L  +
Sbjct: 154 NAVVIGGGYIGLEAAAVL--------TKF------GVNVTLLEALPRVLARVAGEALSEF 199

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDS-QKLILNDGTEVPYGLLVWSTGVGPST-LVKSL 126
              +    GV L     +  I  D      + + DG+ +P  +++   G+ P    + S 
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA 259

Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
                 G  + +DE+ R  S+ DV+A+GDC
Sbjct: 260 GASGGNG--VDVDEFCRT-SLTDVYAIGDC 286

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 29/115 (25%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-------------LS 64
           VVVGGG  G   +  +                  I VTLIE N                 
Sbjct: 6   VVVGGGTGGATAAKYIKLA------------DPSIEVTLIEPNTDYYTCYLSNEVIGGDR 53

Query: 65  SFDDRLRHYATTQLSKSGVRLVRGIVKDVD--SQKLILNDGTEVPYGLLVWSTGV 117
             +     Y    L   G+++V      +D   + +    G E  Y   V + G+
Sbjct: 54  KLESIKHGYD--GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGI 106

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 45/182 (24%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYA 74
              V G G  G+E    LS             V     V +   +  + +  D+ ++ YA
Sbjct: 176 SVAVFGPGVIGLELGQALSRL----------GVI----VKVFGRSGSVANLQDEEMKRYA 221

Query: 75  TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYG-------------LLVWSTGVGPST 121
               ++      +  V     ++    D  EV Y              +L  +TG   + 
Sbjct: 222 EKTFNEEFYFDAKARVISTIEKE----DAVEVIYFDKSGQKTTESFQYVLA-ATGRKANV 276

Query: 122 ---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
               +++  +          DE     SV  +F  GD +             L   A   
Sbjct: 277 DKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANN-----T----LTLLHEAADD 327

Query: 179 GK 180
           GK
Sbjct: 328 GK 329

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 28/152 (18%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHY 73
             VV+GGG  G+E +   +  I  ++           HVTL++    +L       +  +
Sbjct: 151 RLVVIGGGYIGLEVA---ATAIKANM-----------HVTLLDTAARVLERVTAPPVSAF 196

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPST-LVK 124
                 ++GV +     V G     D QK   ++  DGT +P  L++   G+ P+  L  
Sbjct: 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 256

Query: 125 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
           +  L    G  I I+E ++  S   + AVGDC
Sbjct: 257 AAGLQVDNG--IVINEHMQT-SDPLIMAVGDC 285

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 22/192 (11%)

Query: 16  HCVVVGGGPTGVEFSGELSD-------------FIMRDVRQRYSHVKDYIHVTLIEANEI 62
              ++GGG +G +   E+S              F+  DV  R    +        +    
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGRE 224

Query: 63  LSSFDDRLRHYATT----QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 118
                                  GV              +   DGTE  +  ++W TG  
Sbjct: 225 PDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFR 284

Query: 119 PSTL-VKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE 176
           P+   +K LDL  +P G++ +D   LR  +V  V+ +G   G         L  + + A 
Sbjct: 285 PALSHLKGLDL-VTPQGQVEVDGSGLRALAVPSVWLLG--YGDWNGMASATLIGVTRYAR 341

Query: 177 RQGKYLFSLLNR 188
              + + +    
Sbjct: 342 EAVRQVTAYCAD 353

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 50/182 (27%), Positives = 70/182 (38%), Gaps = 44/182 (24%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYA 74
             +VVGGG  G+E         +  V  R         VT++E  + IL   D  +    
Sbjct: 200 SMIVVGGGVIGLE---------LGSVWARLGA-----KVTVVEFLDTILGGMDGEVAKQL 245

Query: 75  TTQLSKSGVRL-----VRGIVKDVDSQKLIL---NDGTEVPYG---LLVWSTGVGPSTLV 123
              L+K G+       V G VK  D  K+       G         +L+ +TG  PST  
Sbjct: 246 QRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLI-ATGRKPST-- 302

Query: 124 KSLDLPKS-----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
             L L K+       GR+ ID   +  S+  V+A+GD        G    P LA  AE +
Sbjct: 303 DGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIGDVVR-----G----PMLAHKAEDE 352

Query: 179 GK 180
           G 
Sbjct: 353 GV 354

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 48/184 (26%), Positives = 68/184 (36%), Gaps = 52/184 (28%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 76
           VV+G G  G+E            V  R         VT++E  +EI+ + D  +R     
Sbjct: 181 VVIGAGYIGLEMGS---------VWGRIG-----SEVTVVEFASEIVPTMDAEIRKQFQR 226

Query: 77  QLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYG--------------LLVWSTGVGPST 121
            L K G++      V  VD+      DG ++                 +LV S G  P T
Sbjct: 227 SLEKQGMKFKLKTKVVGVDTSG----DGVKLTVEPSAGGEQTIIEADVVLV-SAGRTPFT 281

Query: 122 LVKSLDLPKS-----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE 176
               L+L K        GRI ++E     +V  V+A+GD        G    P LA  AE
Sbjct: 282 --SGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIP-----G----PMLAHKAE 329

Query: 177 RQGK 180
             G 
Sbjct: 330 EDGV 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.97
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.96
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.95
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.95
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.93
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.93
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.93
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.93
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.93
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.93
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.92
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.92
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.92
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.92
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.92
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.92
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.92
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.92
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.92
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.92
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.92
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.92
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.92
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.92
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.92
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.92
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.92
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.91
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.91
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.91
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.91
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.91
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.91
4dna_A	463	Probable glutathione reductase; structural genomic	99.91
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.91
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.91
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.91
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.91
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.91
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.91
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.91
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.91
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.9
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.9
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.9
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.9
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.9
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.9
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.9
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.9
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.9
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.9
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.9
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.9
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.89
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.89
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.89
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.89
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.89
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.89
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.89
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.88
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.88
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.88
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.88
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.88
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.87
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.87
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.86
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.86
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.85
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.85
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.85
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.84
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.83
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.83
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.83
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.78
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.76
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.76
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.76
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.76
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.74
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.73
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.72
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.67
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.66
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.65
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.59
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.58
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.48
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.48
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.44
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.36
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.06
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.03
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.01
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.99
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.99
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.96
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.93
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.92
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.92
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.91
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.9
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.9
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.88
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.87
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.87
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.85
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.84
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.84
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.84
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.81
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.81
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.81
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.8
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.8
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.8
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.8
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.79
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.78
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.78
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.77
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.75
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.75
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.73
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.72
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.71
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.7
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.69
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.69
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.68
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.68
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.67
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.67
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.67
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.66
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.64
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.64
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.63
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.62
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.62
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.62
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.61
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.61
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.61
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.6
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.59
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.59
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.59
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.59
4dna_A	463	Probable glutathione reductase; structural genomic	98.58
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.58
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.57
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.57
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.56
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.56
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.56
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.56
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.54
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.54
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.52
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.51
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.51
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.51
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.51
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.5
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.5
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.5
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.49
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.47
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.47
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.47
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.45
3dme_A	369	Conserved exported protein; structural genomics, P	98.45
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.45
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.44
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.43
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.42
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.42
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.42
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.4
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.4
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.4
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.4
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.39
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.39
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.38
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.38
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.36
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.36
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.36
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.35
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.35
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.34
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.33
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.33
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.33
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.32
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.31
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.31
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.28
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.28
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.27
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.27
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.27
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.27
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.27
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.26
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.24
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.22
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.22
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.21
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.21
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.21
3atr_A	453	Conserved archaeal protein; saturating double bond	98.19
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.19
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.18
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.18
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.18
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.17
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.16
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.16
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.15
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.15
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.14
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.11
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.06
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.06
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.05
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.98
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.98
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.93
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.92
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.89
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.88
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.87
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.86
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.84
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.84
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.84
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.81
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.76
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.71
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.62
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.61
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.6
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.43
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.32
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.28
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.26
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.24
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.23
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.1
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.99
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.93
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.53
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.48
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	96.39
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	96.36
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.34
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.29
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.28
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.21
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.15
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.1
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	96.03
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.0
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	95.96
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	95.94
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	95.7
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	95.65
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	95.64
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.61
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	95.61
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	95.59
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.58
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	95.43
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	95.41
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	95.37
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	95.35
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.31
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	95.13
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	95.12
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	95.12
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	94.88
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	94.82
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.75
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.71
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.53
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.52
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.43
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.16
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	94.09
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.01
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.98
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	93.82
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	93.7
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.67
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.52
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	93.5
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	93.49
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	93.44
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	93.32
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.26
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	93.25
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	93.21
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.18
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.16
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.13
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.02
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.93
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.81
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.73
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	92.67
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.44
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.41
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.15
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	92.05
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	92.04
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.01
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.84
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	91.6
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	91.51
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	91.25
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	91.21
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	91.21
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.11
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	91.04
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	91.03
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	90.97
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.89
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	90.88
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	90.73
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	90.72
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.62
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	90.36
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	90.3
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	90.28
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.26
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	90.24
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	90.2
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	90.14
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	89.83
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.65
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	89.57
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	89.44
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	89.42
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	88.99
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	88.99
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	88.91
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	88.73
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	88.51
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	88.46
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	88.03
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	87.56
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	87.54
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	87.41
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	87.37
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	87.36
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	87.13
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	87.11
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	87.08
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	86.96
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	86.96
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.86
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.72
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	86.53
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	86.48
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	86.46
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	86.41
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	86.24
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	86.18
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.12
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	86.11
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.08
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	85.98
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.92
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	85.87
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	85.7
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	85.68
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	85.58
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	85.52
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	85.47
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	85.31
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	85.25
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	85.17
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	85.13
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	85.11
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	85.1
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	85.09
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	85.05
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	85.05
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	85.01
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	84.97
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	84.96
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	84.8
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	84.77
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	84.66
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	84.59
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.56
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	84.51
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	84.49
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	84.45
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	84.45
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	84.31
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	84.28
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	84.13
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	84.07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	84.06
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	84.01
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	83.93
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	83.77
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	83.65
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	83.5
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	83.46
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	83.33
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	83.11
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	83.08
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	83.02
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	82.82
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	82.75
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	82.75
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	82.72
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	82.67
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	82.59
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	82.57
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	82.56
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	82.5
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	82.32
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	82.27
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	82.17
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	82.16
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	82.08
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	82.02
3tl2_A	315	Malate dehydrogenase; center for structural genomi	81.85
4f6c_A	427	AUSA reductase domain protein; thioester reductase	81.84
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	81.8
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	81.64
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	81.57
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	81.54
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	81.54
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	81.5
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	81.49
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	81.49
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	81.36
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	81.2
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	81.13
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	80.8
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	80.76
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	80.63
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	80.51
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	80.46
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	80.42
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	80.42
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	80.39
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	80.37
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	80.3
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	80.18
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	80.14
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	80.11
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	80.09
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	80.06
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	80.01

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=2.6e-52  Score=391.14  Aligned_cols=267  Identities=30%  Similarity=0.616  Sum_probs=225.9

Q ss_pred             CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEE
Q 023375            7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL   85 (283)
Q Consensus         7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v   85 (283)
                      +++++++.++++|||||++|+|+|.+|+++....+.+.||.+..+.+|+|+++. +++|.+++++++++.+.|+++||++
T Consensus       210 ~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v  289 (502)
T 4g6h_A          210 GDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKV  289 (502)
T ss_dssp             TCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             cchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceee
Confidence            344567788999999999999999999999887777777776667999999998 8999999999999999999999999


Q ss_pred             EeC-ceEEEeCCeEEE----cCC----cEEEeeEEEEcCCCCCchhhhc----cCCCCCCCCccccCCCcccCCCCCEEE
Q 023375           86 VRG-IVKDVDSQKLIL----NDG----TEVPYGLLVWSTGVGPSTLVKS----LDLPKSPGGRIGIDEWLRVPSVQDVFA  152 (283)
Q Consensus        86 ~~~-~V~~v~~~~v~~----~~g----~~i~~d~vi~a~G~~~~~~~~~----~~l~~~~~g~i~Vd~~l~~~~~~~Vfa  152 (283)
                      +++ +|++++++.+.+    .||    +++++|+||||+|.+|+++..+    ++...+.+|+|.||++||++++|||||
T Consensus       290 ~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfA  369 (502)
T 4g6h_A          290 HLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFA  369 (502)
T ss_dssp             ETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEE
T ss_pred             ecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEE
Confidence            999 899999997655    354    3699999999999999965443    456667789999999999999999999


Q ss_pred             eccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCC------CCCC----CcCCCCCCCCceeeecccEEEecC
Q 023375          153 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGG------GRAN----SAKDMELGDPFVYRHLGSMATIGR  222 (283)
Q Consensus       153 iGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~------g~~~----~~~~~~~~~~~~~~~~g~~~slG~  222 (283)
                      +|||+..       +.|++++.|.+||+++|+||.+..+...      ....    ..+..++ +||.|+++|+|+|||+
T Consensus       370 iGD~a~~-------~~p~~a~~A~qqg~~~A~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pF~y~~~G~~a~lG~  441 (502)
T 4g6h_A          370 IGDNAFA-------GLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNF-KPFKYNDLGALAYLGS  441 (502)
T ss_dssp             CGGGEES-------SSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHTTSSSCCHHHHHHHTTC-CCCCCCCCEEEEECST
T ss_pred             EEcccCC-------CCCCchHHHHHHHHHHHHHHHHHhccchhhhhhhhccchhhhhhcCCCC-CCCEecCcceEEEEeC
Confidence            9999974       5699999999999999999987542100      0000    0011233 8999999999999999


Q ss_pred             cceeEeccccccCCCeeeecHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCCCCC
Q 023375          223 YKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISR  282 (283)
Q Consensus       223 ~~av~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~  282 (283)
                      ++||+++.+... .++.+.|++||++|+++|+++++++|+|+.|++||++.+||+||++|
T Consensus       442 ~~av~~~~~~~~-~~~~~~G~~a~~~w~~~yl~~l~~~r~r~~v~~~W~~~~~fgRdisr  500 (502)
T 4g6h_A          442 ERAIATIRSGKR-TFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDFFK  500 (502)
T ss_dssp             TCEEEEEEETTE-EEEEEEEHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred             CceEEEccCCCc-cceecccHHHHHHHHHHHHHHccchhhhHHHHHHHHHHHhCCCCCcC
Confidence            999999854211 24677899999999999999999999999999999999999999987

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.97  E-value=7.3e-31  Score=241.55  Aligned_cols=221  Identities=12%  Similarity=0.130  Sum_probs=174.1

Q ss_pred             CccEEEEEeCCCCC----CCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEEcC----CcEEEeeEEEEcCCCCCc
Q 023375           50 DYIHVTLIEANEIL----SSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILND----GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        50 ~~~~V~li~~~~~l----~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~~----g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+|++++..+.+    +...+...+.+++.|+++||+++++ +|++++++.+.+++    ++++++|+++|++|.+|+
T Consensus       178 ~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~  257 (430)
T 3hyw_A          178 YKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP  257 (430)
T ss_dssp             GGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECC
T ss_pred             ccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCc
Confidence            45789999886433    3456778888999999999999999 89999999888764    358999999999999999


Q ss_pred             hhhhccCCCC--CCCCccccCCCcccCCCCCEEEeccccccCcCCCC---cCCCcchHHHHHHHHHHHHHHHHHhhhCCC
Q 023375          121 TLVKSLDLPK--SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK---TVLPALAQVAERQGKYLFSLLNRIGKAGGG  195 (283)
Q Consensus       121 ~~~~~~~l~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~---~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g  195 (283)
                      +++..++..+  +.+|++.||++||++++|||||+|||+++++..+.   ...|++++.|.+||+++|+||.+.++   |
T Consensus       258 ~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~---g  334 (430)
T 3hyw_A          258 EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR---N  334 (430)
T ss_dssp             HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhc---C
Confidence            8888776443  55678999999998799999999999998764332   23689999999999999999999887   4


Q ss_pred             CCCCcCCCCCCCCceeeecccEEEecCcceeEeccccc--cCCCeeeecHHH---------HHHHHHHHHHhcCCchhHH
Q 023375          196 RANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNK--ESKGLSLAGFLS---------WLVWRSAYLTRVVSWRNRF  264 (283)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~g~~~slG~~~av~~~~~~~--~~~~~~~~G~~a---------~~~~~~~~~~~~~~~~~r~  264 (283)
                      +       +. +++.+...+.++++|.+.|++......  ....+...|.++         |++|+..+..+.+.+++|.
T Consensus       335 ~-------~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~K~~~~~~~~w~~~~~~~~~~~~~~~  406 (430)
T 3hyw_A          335 N-------PD-KYAPRLSAICIADFGEDAGFFFADPVIPPRERVITKMGKWAHYFKTAFEKYFLWKVRNGNIAPSFEEKV  406 (430)
T ss_dssp             C-------CC-CEEECCCEEEEEECSSSEEEEEEESSSSSCSEEEEEEEHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             C-------CC-CcccCCcEEEEEEcCCCcEEEEEcccCCccccccccccHHHHHHHHHHHHHHHHHHHHhCccHhHHHHH
Confidence            3       22 444455666788999999987643211  112344456554         5667777777789999999


Q ss_pred             HHHHHHHHHhccCCCCC
Q 023375          265 YVAVNWATTFVFGRDIS  281 (283)
Q Consensus       265 ~~~~~w~~~~~~~~~~~  281 (283)
                      .++++|+....+.|++.
T Consensus       407 ~~~~~w~~~~~~~~~~~  423 (430)
T 3hyw_A          407 LEIFLKVHPIELCKDCE  423 (430)
T ss_dssp             HHHHHCCCSEEECSCCC
T ss_pred             HHHHhcccccccCcccc
Confidence            99999999999988874

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.96  E-value=6.8e-28  Score=222.16  Aligned_cols=162  Identities=18%  Similarity=0.287  Sum_probs=148.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      .+.++++|||||++|+|+|..+++++              .+|+++++. ++++.+++++.+.+.+.|+++||+++++ +
T Consensus       145 ~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~  210 (437)
T 4eqs_A          145 NQVDKVLVVGAGYVSLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEE  210 (437)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCC
T ss_pred             cCCcEEEEECCccchhhhHHHHHhcC--------------CcceeeeeeccccccccchhHHHHHHHhhccceEEEeccE
Confidence            45789999999999999999999988              899999998 8999999999999999999999999999 8


Q ss_pred             eEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-CCCcC
Q 023375           90 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGKTV  167 (283)
Q Consensus        90 V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-~~~~~  167 (283)
                      |++++.+.+++++|+++++|.|++++|.+|+ .+++..+++.+++|+|.||+++|| +.|+|||+|||+..+.. .+...
T Consensus       211 v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~T-s~p~IyA~GDva~~~~~~~~~~~  289 (437)
T 4eqs_A          211 INAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYRHVDLPA  289 (437)
T ss_dssp             EEEEETTEEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBC-SSTTEEECGGGEEEEBSSSSSEE
T ss_pred             EEEecCCeeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccC-CCCCEEEEEEccCcccccCCccc
Confidence            9999999999999999999999999999998 677888999999999999999999 99999999999987654 33344


Q ss_pred             CCcchHHHHHHHHHHHHHHHH
Q 023375          168 LPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       168 ~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .+++++.|.+||+++|+||..
T Consensus       290 ~~~~a~~A~~~g~~~a~ni~g  310 (437)
T 4eqs_A          290 SVPLAWGAHRAASIVAEQIAG  310 (437)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHS
T ss_pred             cchhHHHHHHHHHHHHHHHcC
Confidence            678999999999999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.95  E-value=6.2e-27  Score=215.69  Aligned_cols=229  Identities=16%  Similarity=0.114  Sum_probs=170.5

Q ss_pred             cCeEEEEccCcHH------HHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCC-CC----CCCCCHHHHHHHHHHHHhC
Q 023375           14 LLHCVVVGGGPTG------VEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EI----LSSFDDRLRHYATTQLSKS   81 (283)
Q Consensus        14 ~~~vvVvGgG~~G------ve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~-~~----l~~~~~~~~~~~~~~l~~~   81 (283)
                      ..+++|||||++|      +|+|.+++...++.      ..+...+ |+++++. .+    ++.++ .....+.+.|+++
T Consensus       149 ~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~------g~~~~~~~Vtlv~~~~~~~~~~l~~~~-~~~~~~~~~l~~~  221 (437)
T 3sx6_A          149 EPGPIVIGAMAGASCFGPAYEYAMIVASDLKKR------GMRDKIPSFTFITSEPYIGHLGIQGVG-DSKGILTKGLKEE  221 (437)
T ss_dssp             SCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHT------TCGGGCSCEEEEESSSSTTCTTTTCCT-THHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHc------CCcccCcEEEEEcCCccccccccCcch-HHHHHHHHHHHHC
Confidence            4567899997654      99998887654320      1111244 9999987 44    33444 4788899999999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcC---------CcEEEeeEEEEcCCCCCchhhhc-cCCCCCCCCccccCCCcccCCCCCE
Q 023375           82 GVRLVRG-IVKDVDSQKLILND---------GTEVPYGLLVWSTGVGPSTLVKS-LDLPKSPGGRIGIDEWLRVPSVQDV  150 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~---------g~~i~~d~vi~a~G~~~~~~~~~-~~l~~~~~g~i~Vd~~l~~~~~~~V  150 (283)
                      ||+++++ +|++|+++.+++++         ++++++|.+++++|.++++.+.+ .++ .+++|++.||+++|++++|||
T Consensus       222 gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i~Vd~~l~t~~~~~I  300 (437)
T 3sx6_A          222 GIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGGFVLVDEHQRSKKYANI  300 (437)
T ss_dssp             TCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTSCBCBCTTSBBSSCTTE
T ss_pred             CCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCCcEEeChhccCCCCCCE
Confidence            9999999 89999999877764         67899999999999998865554 566 578899999999999899999


Q ss_pred             EEeccccccCcCCCC---cCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccE-EEecCccee
Q 023375          151 FAVGDCSGYLESTGK---TVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSM-ATIGRYKAL  226 (283)
Q Consensus       151 faiGD~a~~~~~~~~---~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~-~slG~~~av  226 (283)
                      ||+|||+.++++.+.   .+.|++++.|.+||+.+|+||.+.+.   |+       ++ .+|.+.....| +++|.+.++
T Consensus       301 fa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~---g~-------~~-~~~~~~~~~~~~~~~G~~~~~  369 (437)
T 3sx6_A          301 FAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLE---GR-------KG-EQTMGTWNAVAFADMGDRGAA  369 (437)
T ss_dssp             EECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTT---TS-------CC-CCCCCSCCEEEEEECSSCEEE
T ss_pred             EEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhc---CC-------CC-CCcccCcceEEEEEeCCCceE
Confidence            999999987654332   12588999999999999999999886   43       22 56555555555 458877665


Q ss_pred             Eeccc-c-ccCCCeeeecHHHHHHHHHHHHHhcCCch
Q 023375          227 VDLRQ-N-KESKGLSLAGFLSWLVWRSAYLTRVVSWR  261 (283)
Q Consensus       227 ~~~~~-~-~~~~~~~~~G~~a~~~~~~~~~~~~~~~~  261 (283)
                      ..... . +...++.+.|.++|++|..++..++..++
T Consensus       370 ~~~~~~~p~~~~~~~~~g~~~~~~K~~~~~~f~~~~~  406 (437)
T 3sx6_A          370 FIALPQLKPRKVDVFAYGRWVHLAKVAFEKYFIRKMK  406 (437)
T ss_dssp             EEEESSSSSCSEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCcccccccccHHHHHHHHHHHHHHHHHhc
Confidence            42211 0 11245789999999999998877764443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.93  E-value=5.2e-25  Score=178.67  Aligned_cols=151  Identities=25%  Similarity=0.350  Sum_probs=129.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------CCC-----CHHHHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------SSF-----DDRLRHYATTQLS   79 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------~~~-----~~~~~~~~~~~l~   79 (283)
                      .+|+|||||++|+|+|..|++.+              .+|+++++. ..+         |.+     ++++.+.+.+.++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g--------------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   67 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAG--------------LKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHAR   67 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHH
Confidence            37999999999999999999887              899999986 454         233     4788999999999


Q ss_pred             hCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEecc
Q 023375           80 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD  155 (283)
Q Consensus        80 ~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD  155 (283)
                      +.||+++.++|++++.+    .+++++| ++++|.||+|+|..|+ +.+.++++.+ +|++.||+++|+ +.|+|||+||
T Consensus        68 ~~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~-~~~~~g~~~~-~g~i~vd~~~~t-~~~~i~a~GD  143 (180)
T 2ywl_A           68 RYGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT-LPSLLGLTRR-GAYIDTDEGGRT-SYPRVYAAGV  143 (180)
T ss_dssp             HTTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH-HHHHHTCCEE-TTEECCCTTCBC-SSTTEEECGG
T ss_pred             HcCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC-ccccCCCCcc-CceEEeCCCCCc-CCCCEEEeec
Confidence            99999998888888643    3666777 8999999999999985 5567788888 899999999999 8999999999


Q ss_pred             ccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          156 CSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       156 ~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      |+..+        +++++.|.+||+++|.||...++
T Consensus       144 ~~~~~--------~~~~~~A~~~g~~aa~~i~~~~~  171 (180)
T 2ywl_A          144 ARGKV--------PGHAIISAGDGAYVAVHLVSDLR  171 (180)
T ss_dssp             GGTCC--------SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcc--------hhhHHHHHHhHHHHHHHHHHHhh
Confidence            99631        23889999999999999998876

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.93  E-value=6.4e-25  Score=200.58  Aligned_cols=183  Identities=23%  Similarity=0.321  Sum_probs=149.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||++|+|+|..|++.+              .+|+++++. .+++. +++++.+.+.+.+++.||+++++ +
T Consensus       144 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~  209 (408)
T 2gqw_A          144 PQSRLLIVGGGVIGLELAATARTAG--------------VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERS  209 (408)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCE
Confidence            3689999999999999999999887              899999997 78874 89999999999999999999999 8


Q ss_pred             eEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC-CCcC
Q 023375           90 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST-GKTV  167 (283)
Q Consensus        90 V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~-~~~~  167 (283)
                      |++++++.|++++|+++++|.||+|+|.+|+ +++++++++.+ +| +.||+++|+ +.|+|||+|||+..+.+. |...
T Consensus       210 v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~  286 (408)
T 2gqw_A          210 VTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACD-DG-IFVDAYGRT-TCPDVYALGDVTRQRNPLSGRFE  286 (408)
T ss_dssp             EEEEETTEEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBS-SS-EECCTTCBC-SSTTEEECGGGEEEEETTTTEEE
T ss_pred             EEEEECCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCC-CC-EEECCCCcc-CCCCEEEEEEEEEecCccCCcee
Confidence            9999855888999999999999999999998 68888888876 46 999999998 899999999999865431 2222


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecc--cEEEecC
Q 023375          168 LPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGR  222 (283)
Q Consensus       168 ~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~~~slG~  222 (283)
                      .+++++.|.+||+++|+||.....         .+++. .|+.+....  .+.++|.
T Consensus       287 ~~~~~~~A~~~g~~aa~~i~g~~~---------~~~~~-~p~~~~~~~~~~~~~~G~  333 (408)
T 2gqw_A          287 RIETWSNAQNQGIAVARHLVDPTA---------PGYAE-LPWYWSDQGALRIQVAGL  333 (408)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCTTS---------CCCCC-CCEEEEEETTEEEEEEEC
T ss_pred             eccHHHHHHHHHHHHHHHhcCCCC---------CcCCC-CCeEEEEECCceEEEECC
Confidence            356789999999999999964211         01222 566665532  4566664

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.93  E-value=3.7e-25  Score=199.49  Aligned_cols=150  Identities=27%  Similarity=0.506  Sum_probs=135.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .++++|||||++|+|+|..|++++              .+|+++++. .+++ +++++.+.+.+.|++.||+++++ +|+
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~  207 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAG--------------YHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELL  207 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTT--------------CEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            489999999999999999999887              899999997 7888 99999999999999999999999 899


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCc
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA  170 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~  170 (283)
                      +++.+.|++++|+ +++|.||+|+|.+|+ +++++++++.+ +| +.||+++|+ +.|+|||+|||+....     ..++
T Consensus       208 ~i~~~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~g-i~Vd~~~~t-~~~~IyA~GD~a~~~~-----~~~~  278 (367)
T 1xhc_A          208 EANEEGVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RG-ILIDDNFRT-SAKDVYAIGDCAEYSG-----IIAG  278 (367)
T ss_dssp             EECSSEEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBS-SS-EECCTTSBC-SSTTEEECGGGEEBTT-----BCCC
T ss_pred             EEEeeEEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CC-EEECCCccc-CCCCEEEeEeeeecCC-----CCcc
Confidence            9998889999988 999999999999999 47788888875 45 999999999 8999999999997421     2367


Q ss_pred             chHHHHHHHHHHHHHHH
Q 023375          171 LAQVAERQGKYLFSLLN  187 (283)
Q Consensus       171 ~~~~A~~qg~~~a~~i~  187 (283)
                      +++.|.+||+++|+||.
T Consensus       279 ~~~~A~~qg~~aa~~i~  295 (367)
T 1xhc_A          279 TAKAAMEQARVLADILK  295 (367)
T ss_dssp             SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            89999999999999986

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.93  E-value=3.7e-25  Score=202.22  Aligned_cols=183  Identities=21%  Similarity=0.302  Sum_probs=151.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|.+.+              .+|+++++. .+++. +++++.+.+.+.+++.||+++++ +
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~  207 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLG--------------LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTG  207 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCE
Confidence            4689999999999999999999887              899999997 67764 78999999999999999999999 8


Q ss_pred             eEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375           90 VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG  164 (283)
Q Consensus        90 V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~  164 (283)
                      |++++.+    .|++++|+++++|.||+|+|.+|+ ++++.++++.+ +| +.||+++++ +.|+|||+|||+..+.+.+
T Consensus       208 v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~t-~~~~IyA~GD~a~~~~~~g  284 (410)
T 3ef6_A          208 VVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-RG-VIVDHCGAT-LAKGVFAVGDVASWPLRAG  284 (410)
T ss_dssp             EEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SS-EECCTTSBC-SSTTEEECGGGEEEEBTTS
T ss_pred             EEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-Ce-EEEccCeeE-CCCCEEEEEcceeccCCCC
Confidence            9999876    588999999999999999999999 58888899876 44 999999999 9999999999998765443


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecc--cEEEecCc
Q 023375          165 KTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGRY  223 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~~~slG~~  223 (283)
                      ....+++++.|..||+++|+||....     .     +++. .||.+.+..  .+.++|..
T Consensus       285 ~~~~~~~~~~A~~qg~~aa~~i~g~~-----~-----~~~~-~p~~~~~~~~~~~~~~G~~  334 (410)
T 3ef6_A          285 GRRSLETYMNAQRQAAAVAAAILGKN-----V-----SAPQ-LPVSWTEIAGHRMQMAGDI  334 (410)
T ss_dssp             SEECCCCHHHHHHHHHHHHHHHTTCC-----C-----CCCB-CCEEEEEETTEEEEEESCS
T ss_pred             CeeeechHHHHHHHHHHHHHHHcCCC-----C-----CCCC-CCeeEEEECCceEEEEcCC
Confidence            33457789999999999999986321     1     2222 566666543  44566643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.93  E-value=6.4e-25  Score=204.65  Aligned_cols=152  Identities=19%  Similarity=0.272  Sum_probs=136.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. +++|.+++++.+.+.+.|++.||+++++ +|
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v  249 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVYSTLG--------------SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKT  249 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEE
Confidence            3689999999999999999999887              899999997 8999999999999999999999999999 89


Q ss_pred             EEEeCC----eEEEcC----CcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           91 KDVDSQ----KLILND----GTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~~~----~v~~~~----g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      ++++.+    .+++++    |+++++|.||+|+|.+|+. +  +++++++++++|+|.||+++|+ +.|+|||+|||+..
T Consensus       250 ~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~  328 (482)
T 1ojt_A          250 VAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQ  328 (482)
T ss_dssp             EEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTCS
T ss_pred             EEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCccc-CCCCEEEEEcccCC
Confidence            998643    366666    7789999999999999994 4  5788999888899999999998 89999999999952


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                               |++++.|.+||+++|+||..
T Consensus       329 ---------~~l~~~A~~~g~~aa~~i~g  348 (482)
T 1ojt_A          329 ---------PMLAHKAVHEGHVAAENCAG  348 (482)
T ss_dssp             ---------SCCHHHHHHHHHHHHHHHTT
T ss_pred             ---------CccHHHHHHHHHHHHHHHcC
Confidence                     67899999999999999863

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.93  E-value=1.7e-24  Score=198.04  Aligned_cols=182  Identities=24%  Similarity=0.406  Sum_probs=151.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .++++|||||++|+|+|..|...+              .+|+++++. .+++ .+++.+.+.+.+.+++.||+++++ +|
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v  217 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFG--------------VNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAM  217 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEE
Confidence            789999999999999999999887              899999997 7776 489999999999999999999999 89


Q ss_pred             EEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC-
Q 023375           91 KDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST-  163 (283)
Q Consensus        91 ~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~-  163 (283)
                      ++++.+     .|++++|+++++|.||+|+|.+|+ ++++.++++.+ +| +.||+++++ +.|+|||+|||+..+.+. 
T Consensus       218 ~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~t-~~~~iyA~GD~a~~~~~~~  294 (415)
T 3lxd_A          218 DCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NG-VDVDEFCRT-SLTDVYAIGDCAAHANDFA  294 (415)
T ss_dssp             EEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SS-EECCTTCBC-SSTTEEECGGGEEEECGGG
T ss_pred             EEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CC-EEECCCCCc-CCCCEEEEEeeeeecCccc
Confidence            999754     578899999999999999999999 58888888876 45 999999999 899999999999876532 


Q ss_pred             -CCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecc--cEEEecCc
Q 023375          164 -GKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGRY  223 (283)
Q Consensus       164 -~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~~~slG~~  223 (283)
                       |....+.+++.|.+||+++|+||....     .     ++.. .||.+.+..  .+.++|..
T Consensus       295 ~g~~~~~~~~~~A~~qg~~aa~~i~g~~-----~-----~~~~-~p~~~~~~~~~~~~~~G~~  346 (415)
T 3lxd_A          295 DGAVIRLESVQNANDMATAAAKDICGAP-----V-----PYKA-TPWFWSNQYDLKLQTVGLS  346 (415)
T ss_dssp             TTCEECCCSHHHHHHHHHHHHHHHTTCC-----C-----CCCC-CCEEEEEETTEEEEEEECC
T ss_pred             CCcceeechHHHHHHHHHHHHHHhcCCC-----C-----CCCC-CCeeEeeeCCcEEEEEeCC
Confidence             444567789999999999999986321     1     2233 677666654  34566653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.92  E-value=4.2e-24  Score=199.80  Aligned_cols=152  Identities=27%  Similarity=0.440  Sum_probs=137.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHh---hhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDF---IMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~---~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      ..++++|||||++|+|+|..|+++   +              .+|+++++. .+++.+++++.+.+.+.|++.||+++++
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~  255 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPG--------------GKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTN  255 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTT--------------CEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCC--------------CeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeC
Confidence            457999999999999999999987   5              899999998 8899999999999999999999999999


Q ss_pred             -ceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           89 -IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        89 -~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                       +|++++.+     .|++++|+++++|.||+|+|.+|+.  + ++.++++++++|+|.||+++|+ +.|+|||+|||+. 
T Consensus       256 ~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~-  333 (495)
T 2wpf_A          256 ENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRT-NVPNIYAIGDITD-  333 (495)
T ss_dssp             CCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBC-SSTTEEECGGGGC-
T ss_pred             CEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCcc-CCCCEEEEeccCC-
Confidence             89998643     4777889899999999999999994  3 5778998888899999999998 8999999999994 


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              .+++++.|..||+++|+||..
T Consensus       334 --------~~~l~~~A~~~g~~aa~~i~g  354 (495)
T 2wpf_A          334 --------RLMLTPVAINEGAALVDTVFG  354 (495)
T ss_dssp             --------SCCCHHHHHHHHHHHHHHHHS
T ss_pred             --------CccCHHHHHHHHHHHHHHhcC
Confidence                    267899999999999999863

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.92  E-value=2.3e-24  Score=200.59  Aligned_cols=178  Identities=22%  Similarity=0.289  Sum_probs=146.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       182 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  247 (478)
T 1v59_A          182 IPKRLTIIGGGIIGLEMGSVYSRLG--------------SKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKV  247 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            3689999999999999999999887              899999997 8899999999999999999999999999 89


Q ss_pred             EEEeC--C----eEEEc-----CCcEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccc
Q 023375           91 KDVDS--Q----KLILN-----DGTEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC  156 (283)
Q Consensus        91 ~~v~~--~----~v~~~-----~g~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~  156 (283)
                      ++++.  +    .++++     +++++++|.||+|+|.+|+.   ++++++++++++|+|.||+++|+ +.|+|||+|||
T Consensus       248 ~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~  326 (478)
T 1v59_A          248 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDV  326 (478)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGG
T ss_pred             EEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCcc-CCCCEEEeecc
Confidence            99975  2    35555     35689999999999999994   57888998888899999999998 89999999999


Q ss_pred             cccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEEEecCc
Q 023375          157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRY  223 (283)
Q Consensus       157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~slG~~  223 (283)
                      +..         |++++.|.+||+++|+||....    .. .   ++.. .|+.......++++|..
T Consensus       327 ~~~---------~~~~~~A~~~g~~aa~~i~~~~----~~-~---~~~~-~p~~~~~~~~~a~vG~~  375 (478)
T 1v59_A          327 TFG---------PMLAHKAEEEGIAAVEMLKTGH----GH-V---NYNN-IPSVMYSHPEVAWVGKT  375 (478)
T ss_dssp             SSS---------CCCHHHHHHHHHHHHHHHHHSC----CC-C---CTTS-CCEEECSSSEEEEEECC
T ss_pred             CCC---------cccHHHHHHHHHHHHHHHcCCC----CC-C---CCCC-CCEEEEcCCcEEEEECC
Confidence            952         6788999999999999997521    11 0   1121 45544444567777743

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.92  E-value=6.3e-24  Score=198.82  Aligned_cols=159  Identities=25%  Similarity=0.355  Sum_probs=137.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|+
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~  241 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLG--------------IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVV  241 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcC--------------CeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEE
Confidence            689999999999999999999887              899999997 8899999999999999999999999999 899


Q ss_pred             EEeCC-----eEEEcCCcE-EEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           92 DVDSQ-----KLILNDGTE-VPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        92 ~v~~~-----~v~~~~g~~-i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      +++.+     .+++++|++ +++|.||+|+|.+|+.  + +++++++. ++|+|.||+++|+ +.|+|||+|||+.+++.
T Consensus       242 ~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~  319 (500)
T 1onf_A          242 EIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRT-SVNNIYAVGDCCMVKKS  319 (500)
T ss_dssp             EEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBC-SSSSEEECSTTEEEC--
T ss_pred             EEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCccc-CCCCEEEEecccccccc
Confidence            99742     467788888 9999999999999995  3 57788888 7899999999998 89999999999954211


Q ss_pred             ------------------------CC-CcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 ------------------------TG-KTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ------------------------~~-~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                                              .+ ....+++++.|.+||+++|+||..
T Consensus       320 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g  370 (500)
T 1onf_A          320 KEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFL  370 (500)
T ss_dssp             ----------------------------CBCCCCHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhC
Confidence                                    00 003478999999999999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.9e-24  Score=201.39  Aligned_cols=152  Identities=23%  Similarity=0.388  Sum_probs=137.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v  249 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLG--------------SETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKI  249 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEE
Confidence            4689999999999999999999887              899999998 8899999999999999999999999999 89


Q ss_pred             EEEeCC------eEEEcCC-cEEEeeEEEEcCCCCCch-h-hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           91 KDVDSQ------KLILNDG-TEVPYGLLVWSTGVGPST-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        91 ~~v~~~------~v~~~~g-~~i~~d~vi~a~G~~~~~-~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      ++++.+      .|++++| +++++|.||+|+|.+|+. + ++.++++++++|+|.||+++|+ +.|+|||+|||+.   
T Consensus       250 ~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~---  325 (479)
T 2hqm_A          250 VKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNT-NVPNIYSLGDVVG---  325 (479)
T ss_dssp             EEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGTT---
T ss_pred             EEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCcc-CCCCEEEEEecCC---
Confidence            998642      4677888 789999999999999995 5 5778999988899999999998 8999999999974   


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                            .|..++.|.+||+++|+||..
T Consensus       326 ------~~~~~~~A~~~g~~aa~~i~~  346 (479)
T 2hqm_A          326 ------KVELTPVAIAAGRKLSNRLFG  346 (479)
T ss_dssp             ------SSCCHHHHHHHHHHHHHHHHS
T ss_pred             ------CcccHHHHHHHHHHHHHHhcC
Confidence                  267899999999999999874

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.92  E-value=1.8e-24  Score=205.29  Aligned_cols=162  Identities=28%  Similarity=0.449  Sum_probs=143.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...++|+|||||++|+|+|..|++.+              .+|+++++. .+++.+++++.+.+.+.+++.||+++++ +
T Consensus       149 ~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~  214 (565)
T 3ntd_A          149 NNVEHATVVGGGFIGLEMMESLHHLG--------------IKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTA  214 (565)
T ss_dssp             TTCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCe
Confidence            34679999999999999999999887              899999997 8899999999999999999999999999 8


Q ss_pred             eEEEeC--------------------C---eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccC
Q 023375           90 VKDVDS--------------------Q---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVP  145 (283)
Q Consensus        90 V~~v~~--------------------~---~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~  145 (283)
                      |++++.                    +   .+++.+|+++++|.||+|+|.+|+ .+++.++++++++|++.||+++|+ 
T Consensus       215 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t-  293 (565)
T 3ntd_A          215 LSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-  293 (565)
T ss_dssp             EEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBC-
T ss_pred             EEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCccc-
Confidence            988865                    2   366788999999999999999999 577778999998999999999999 


Q ss_pred             CCCCEEEeccccccCcC-CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          146 SVQDVFAVGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       146 ~~~~VfaiGD~a~~~~~-~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      +.|+|||+|||+..++. .+....+++++.|.+||+++|+||..
T Consensus       294 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  337 (565)
T 3ntd_A          294 SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFG  337 (565)
T ss_dssp             SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcC
Confidence            89999999999976654 23334678999999999999999863

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.92  E-value=6.5e-24  Score=198.27  Aligned_cols=152  Identities=24%  Similarity=0.429  Sum_probs=137.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHh---hhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDF---IMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~---~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      ..++++|||||++|+|+|..|+++   +              .+|+++++. .++|.+++++.+.+.+.|++.||+++++
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~  251 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARG--------------GQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTH  251 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCc--------------CeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeC
Confidence            457999999999999999999987   5              899999998 8899999999999999999999999999


Q ss_pred             -ceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           89 -IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        89 -~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                       +|++++.+     .|++++|+++++|.||+|+|.+|+.  + ++.++++++++|+|.||+++|+ +.|+|||+|||+. 
T Consensus       252 ~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t-~~~~IyA~GD~~~-  329 (490)
T 1fec_A          252 ENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTD-  329 (490)
T ss_dssp             CCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGC-
T ss_pred             CEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCcc-CCCCEEEEeccCC-
Confidence             89998643     4677888899999999999999995  3 6778999888899999999998 8999999999994 


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              .+++++.|.+||+++|+||..
T Consensus       330 --------~~~l~~~A~~~g~~aa~~i~g  350 (490)
T 1fec_A          330 --------RVMLTPVAINEGAAFVDTVFA  350 (490)
T ss_dssp             --------SCCCHHHHHHHHHHHHHHHHS
T ss_pred             --------CccCHHHHHHHHHHHHHHhcC
Confidence                    267899999999999999863

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.92  E-value=2.1e-24  Score=201.54  Aligned_cols=160  Identities=26%  Similarity=0.368  Sum_probs=138.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ...++|+|||||++|+|+|..|++++              .+|+++++. .+++ .+++++.+.+.+.|++.||+++++ 
T Consensus       192 ~~~~~vvVIGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~  257 (490)
T 2bc0_A          192 KDIKRVAVVGAGYIGVELAEAFQRKG--------------KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGE  257 (490)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETC
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCC--------------CeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCC
Confidence            45789999999999999999999887              899999997 7888 799999999999999999999999 


Q ss_pred             ceEEEeCCe----EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-
Q 023375           89 IVKDVDSQK----LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-  162 (283)
Q Consensus        89 ~V~~v~~~~----v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-  162 (283)
                      +|++++.++    +.+ +|+++++|.||+|+|.+|+ ++++.. ++++++|+|.||+++|+ +.|+|||+|||+..+.+ 
T Consensus       258 ~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~~-l~~~~~G~I~Vd~~~~t-~~~~IyA~GD~~~~~~~~  334 (490)
T 2bc0_A          258 TVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNGK-IDLFRNGAFLVNKRQET-SIPGVYAIGDCATIYDNA  334 (490)
T ss_dssp             CEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCGGGTTC-SCBCTTSCBCCCTTCBC-SSTTEEECGGGBCEEETT
T ss_pred             EEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChHHHHhh-hccCCCCCEEECCCccc-CCCCEEEeeeeEEecccc
Confidence            899997652    555 7789999999999999999 566665 77778899999999999 99999999999976432 


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .+....+++++.|.+||+++|+||..
T Consensus       335 ~g~~~~~~~~~~A~~qg~~aa~~i~g  360 (490)
T 2bc0_A          335 TRDTNYIALASNAVRTGIVAAHNACG  360 (490)
T ss_dssp             TTEEECCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCceeecccHHHHHHHHHHHHHHhcC
Confidence            22223467899999999999999863

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.92  E-value=2.3e-24  Score=196.55  Aligned_cols=183  Identities=25%  Similarity=0.421  Sum_probs=150.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||+|++|+|+|..+...+              .+|+++++. .+++ .+++++.+.+.+.+++.||+++++ +
T Consensus       141 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~  206 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATARAKG--------------LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVR  206 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCE
Confidence            5689999999999999999999887              899999997 6776 489999999999999999999999 8


Q ss_pred             eEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-
Q 023375           90 VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-  162 (283)
Q Consensus        90 V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-  162 (283)
                      |++++.+     .|++++|+++++|.||+|+|.+|+ ++++.++++.+ +| +.||+++++ +.|+|||+|||+..+.+ 
T Consensus       207 v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~G-i~vd~~~~t-~~~~iya~GD~a~~~~~~  283 (404)
T 3fg2_P          207 ATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AG-IIVDQQLLT-SDPHISAIGDCALFESVR  283 (404)
T ss_dssp             EEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EEECTTSBC-SSTTEEECGGGEEEEETT
T ss_pred             EEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCC-CC-EEECCCccc-CCCCEEEeecceeecCcc
Confidence            9998753     578899999999999999999999 48888898876 45 999999998 89999999999987653 


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecc--cEEEecCc
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGRY  223 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~~~slG~~  223 (283)
                      .|....+.+++.|..||+.+|+||....          .++.. .||.+.++.  .+.++|..
T Consensus       284 ~g~~~~~~~~~~A~~qg~~aa~~i~g~~----------~~~~~-~p~~~~~~~~~~~~~~G~~  335 (404)
T 3fg2_P          284 FGETMRVESVQNATDQARCVAARLTGDA----------KPYDG-YPWFWSDQGDDKLQIVGLT  335 (404)
T ss_dssp             TTEEECCCSHHHHHHHHHHHHHHTTTCC----------CCCCC-CCEEEEEETTEEEEEEECC
T ss_pred             CCceeeehHHHHHHHHHHHHHHHhCCCC----------CCCCC-CCceEeEECCcEEEEEeCC
Confidence            2323346678999999999999986321          12232 677676664  34556643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.92  E-value=5.9e-24  Score=196.53  Aligned_cols=152  Identities=27%  Similarity=0.414  Sum_probs=137.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  231 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVINGLG--------------AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIP  231 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4689999999999999999999887              899999997 7899999999999999999999999999 89


Q ss_pred             EEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           91 KDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        91 ~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      ++++.+     .|++++|+++++|.||+|+|.+|+.  + ++.++++++++|+|.||+++|+ +.|+|||+|||+.    
T Consensus       232 ~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~----  306 (450)
T 1ges_A          232 KAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTG----  306 (450)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECSGGGT----
T ss_pred             EEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCcc-CCCCEEEEeccCC----
Confidence            998743     4777889899999999999999994  3 5778898888999999999998 8999999999984    


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                           .|+.++.|.+||+++|+||..
T Consensus       307 -----~~~~~~~A~~~g~~aa~~i~~  327 (450)
T 1ges_A          307 -----AVELTPVAVAAGRRLSERLFN  327 (450)
T ss_dssp             -----SCCCHHHHHHHHHHHHHHHHT
T ss_pred             -----CCccHHHHHHHHHHHHHHHcC
Confidence                 267899999999999999864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.92  E-value=4.7e-24  Score=198.39  Aligned_cols=152  Identities=22%  Similarity=0.320  Sum_probs=134.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .+++ .+++++.+.+.+.|++.||+++++ +
T Consensus       177 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~  242 (474)
T 1zmd_A          177 VPEKMVVIGAGVIGVELGSVWQRLG--------------ADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTK  242 (474)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcC--------------CEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCce
Confidence            3589999999999999999999887              899999998 8899 899999999999999999999999 8


Q ss_pred             eEEEeCC--e-EEE-------cCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccc
Q 023375           90 VKDVDSQ--K-LIL-------NDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC  156 (283)
Q Consensus        90 V~~v~~~--~-v~~-------~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~  156 (283)
                      |++++.+  . +.+       .+++++++|.||+|+|.+|+. +  +++++++++++|+|.||+++|+ +.|+|||+|||
T Consensus       243 v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~  321 (474)
T 1zmd_A          243 VTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQT-KIPNIYAIGDV  321 (474)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBC-SSTTEEECGGG
T ss_pred             EEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCcc-CCCCEEEeeec
Confidence            9999743  2 443       356789999999999999994 4  5778898888899999999998 89999999999


Q ss_pred             cccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      +..         |++++.|.+||+++|+||..
T Consensus       322 ~~~---------~~~~~~A~~~g~~aa~~i~~  344 (474)
T 1zmd_A          322 VAG---------PMLAHKAEDEGIICVEGMAG  344 (474)
T ss_dssp             SSS---------CCCHHHHHHHHHHHHHHHTT
T ss_pred             CCC---------CccHHHHHHHHHHHHHHhcC
Confidence            952         67899999999999999863

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.92  E-value=2e-24  Score=200.31  Aligned_cols=152  Identities=24%  Similarity=0.414  Sum_probs=135.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. +++|.+++++.+.+.+.|++.||+++++ +|
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  235 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYG--------------VDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKV  235 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEE
Confidence            4689999999999999999999887              899999997 8999999999999999999999999999 89


Q ss_pred             EEEeCC----eEEEc-CC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQ----KLILN-DG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~----~v~~~-~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      ++++.+    .+.++ +|  +++++|.||+|+|.+|+. +  +++++++++++|+|.||+++|+ +.|+|||+|||+.. 
T Consensus       236 ~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~-  313 (464)
T 2a8x_A          236 ESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT-NVGHIYAIGDVNGL-  313 (464)
T ss_dssp             EEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBC-SSTTEEECGGGGCS-
T ss_pred             EEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEeECcCCC-
Confidence            999753    24444 66  689999999999999994 4  5777898888899999999998 89999999999952 


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              +++++.|.+||+++|+||..
T Consensus       314 --------~~~~~~A~~~g~~aa~~i~g  333 (464)
T 2a8x_A          314 --------LQLAHVAEAQGVVAAETIAG  333 (464)
T ss_dssp             --------SCSHHHHHHHHHHHHHHHHT
T ss_pred             --------ccCHHHHHHHHHHHHHHhcC
Confidence                    67889999999999999863

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.92  E-value=2.7e-24  Score=205.06  Aligned_cols=162  Identities=27%  Similarity=0.428  Sum_probs=145.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...++++|||||++|+|+|..|++.+              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +
T Consensus       185 ~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~  250 (588)
T 3ics_A          185 KKPRHATVIGGGFIGVEMVENLRERG--------------IEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDG  250 (588)
T ss_dssp             HCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCe
Confidence            45789999999999999999999887              899999997 8899999999999999999999999999 8


Q ss_pred             eEEEeC--CeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC-CC
Q 023375           90 VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST-GK  165 (283)
Q Consensus        90 V~~v~~--~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~-~~  165 (283)
                      |++++.  +.|++++|+++++|.||+|+|.+|+ ++++.++++++++|++.||+++|+ +.|+|||+|||+..++.. |.
T Consensus       251 v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~  329 (588)
T 3ics_A          251 VDALEENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDFVTET  329 (588)
T ss_dssp             EEEEEGGGTEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBC-SSTTEEECGGGBCEEBTTTCC
T ss_pred             EEEEecCCCEEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCcccc-CCCCEEEeeeeeecccccCCc
Confidence            999986  5799999999999999999999999 578888999988999999999999 899999999999765542 33


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHH
Q 023375          166 TVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      ...+++++.|..||+++|+||..
T Consensus       330 ~~~~~~~~~A~~~g~~aa~~i~g  352 (588)
T 3ics_A          330 ETMIPLAWPANRQGRMLADIIHG  352 (588)
T ss_dssp             EECCCCHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHHHHHhcC
Confidence            33578999999999999999863

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.92  E-value=8.5e-24  Score=195.34  Aligned_cols=159  Identities=26%  Similarity=0.414  Sum_probs=140.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.++++|||||++|+|+|..|++.+              .+|+++++. ++++. +++++.+.+.+.+++. |+++++ .
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~  211 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQG--------------KNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEI  211 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCe
Confidence            5579999999999999999999887              899999997 78887 9999999999999999 999999 8


Q ss_pred             eEEEeCCe---EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-CC
Q 023375           90 VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TG  164 (283)
Q Consensus        90 V~~v~~~~---v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-~~  164 (283)
                      |.+++.+.   ..+.+++++++|.||+|+|.+|+ ++++.++++++++|++.||+++|+ +.|+|||+|||+..++. .|
T Consensus       212 v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g  290 (449)
T 3kd9_A          212 TMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQT-SVENVYAAGDVAETRHVITG  290 (449)
T ss_dssp             EEEEECSSSCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBC-SSTTEEECSTTBCEEBTTTC
T ss_pred             EEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCcc-CCCCEEEeeeeeeeccccCC
Confidence            99998653   34567889999999999999998 677888999999999999999999 99999999999976554 23


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      ....+++++.|.+||+++|+||.
T Consensus       291 ~~~~~~l~~~A~~~g~~aa~~i~  313 (449)
T 3kd9_A          291 RRVWVPLAPAGNKMGYVAGSNIA  313 (449)
T ss_dssp             SEECCCCHHHHHHHHHHHHHHHT
T ss_pred             ceEEeccHHHHHHHHHHHHHHhc
Confidence            33357899999999999999986

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.92  E-value=2.1e-24  Score=200.62  Aligned_cols=160  Identities=29%  Similarity=0.460  Sum_probs=142.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ..++++|||||++|+|+|..|++. +              .+|+++++. .+++ .+++++.+.+.+.+++.||+++++ 
T Consensus       158 ~~~~vvViGgG~~g~e~A~~l~~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~  223 (472)
T 3iwa_A          158 EVSKAVIVGGGFIGLEMAVSLADMWG--------------IDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGE  223 (472)
T ss_dssp             SCSEEEEECCSHHHHHHHHHHHHHHC--------------CEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcC--------------CcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCC
Confidence            468999999999999999999988 6              899999997 7888 899999999999999999999999 


Q ss_pred             ceEEEeC-C-e--EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           89 IVKDVDS-Q-K--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        89 ~V~~v~~-~-~--v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      +|++++. + .  +++++|+++++|.||+|+|.+|+ .+++.++++++++|++.||+++|+ +.|+|||+|||+..++..
T Consensus       224 ~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~  302 (472)
T 3iwa_A          224 KVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNLV  302 (472)
T ss_dssp             CEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBC-SSTTEEECGGGEEEEBTT
T ss_pred             EEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCccc-CCCCEEEeccceeccccc
Confidence            8999975 3 2  67788999999999999999998 577778999988999999999999 899999999999876542


Q ss_pred             -CCcCCCcchHHHHHHHHHHHHHHH
Q 023375          164 -GKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       164 -~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                       +....+++++.|.+||+++|+||.
T Consensus       303 ~g~~~~~~~~~~A~~~g~~aa~~i~  327 (472)
T 3iwa_A          303 TGKPGFFPLGSMANRQGRVIGTNLA  327 (472)
T ss_dssp             TSSEECCCCTTHHHHHHHHHHHHHT
T ss_pred             CCceeecchHHHHHHHHHHHHHHhc
Confidence             333357899999999999999986

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.92  E-value=6.7e-24  Score=199.69  Aligned_cols=177  Identities=22%  Similarity=0.315  Sum_probs=149.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD   92 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~   92 (283)
                      ++++|||||++|+|+|..|++.+              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~  280 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATG--------------RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTR  280 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEE
Confidence            89999999999999999999887              899999997 8899999999999999999999999999 8999


Q ss_pred             EeC--Ce------EEEcCCc-EEEeeEEEEcCCCCCch--hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           93 VDS--QK------LILNDGT-EVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        93 v~~--~~------v~~~~g~-~i~~d~vi~a~G~~~~~--~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      ++.  ++      |++++|+ ++++|.||+|+|.+|+.  +++.++++.+++|+|.||+++|+ +.|+|||+|||+..  
T Consensus       281 i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~--  357 (523)
T 1mo9_A          281 IEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIGG--  357 (523)
T ss_dssp             EEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGCS--
T ss_pred             EEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCcc-CCCCEEEEeecCCC--
Confidence            864  33      5667887 89999999999999995  68888999988899999999999 89999999999952  


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEEEecCcc
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYK  224 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~slG~~~  224 (283)
                             |+.++.|..||+++|+||...     ...+   .+.. .|+.......++++|...
T Consensus       358 -------~~~~~~A~~~g~~aa~~i~g~-----~~~~---~~~~-~p~~~~~~~~~a~vG~~e  404 (523)
T 1mo9_A          358 -------PMEMFKARKSGCYAARNVMGE-----KISY---TPKN-YPDFLHTHYEVSFLGMGE  404 (523)
T ss_dssp             -------SCSHHHHHHHHHHHHHHHTTC-----CCCC---CCCS-CCEEEESSSEEEEEECCH
T ss_pred             -------cccHHHHHHHHHHHHHHHcCC-----CCCC---CCCC-CCeEEECCCceEEEeCCH
Confidence                   578899999999999998631     1111   1122 466555556888888643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.92  E-value=4.5e-24  Score=198.22  Aligned_cols=152  Identities=28%  Similarity=0.385  Sum_probs=135.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  241 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIG--------------SEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV  241 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            4689999999999999999999887              899999997 8899999999999999999999999999 89


Q ss_pred             EEEeCC----eEEEc---CC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           91 KDVDSQ----KLILN---DG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        91 ~~v~~~----~v~~~---~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      ++++.+    .+.++   +|  +++++|.||+|+|.+|+. +  +++++++++++|+|.||+++|+ +.|+|||+|||+.
T Consensus       242 ~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~  320 (470)
T 1dxl_A          242 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIP  320 (470)
T ss_dssp             EEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSS
T ss_pred             EEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEEeccCC
Confidence            999864    24443   45  689999999999999994 4  5778888888899999999998 8999999999995


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .         |++++.|.+||+++|+||..
T Consensus       321 ~---------~~~~~~A~~~g~~aa~~i~g  341 (470)
T 1dxl_A          321 G---------PMLAHKAEEDGVACVEYLAG  341 (470)
T ss_dssp             S---------CCCHHHHHHHHHHHHHHHTT
T ss_pred             C---------CccHHHHHHHHHHHHHHHcC
Confidence            2         67899999999999999863

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.92  E-value=4.5e-24  Score=197.35  Aligned_cols=160  Identities=26%  Similarity=0.395  Sum_probs=137.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      +..++++|||||++|+|+|..|++++              .+|+++++. .+++ .+++++.+.+.+.+++.||+++++ 
T Consensus       147 ~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~  212 (452)
T 2cdu_A          147 PKAKTITIIGSGYIGAELAEAYSNQN--------------YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGS  212 (452)
T ss_dssp             GGCSEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESS
T ss_pred             ccCCeEEEECcCHHHHHHHHHHHhcC--------------CEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCC
Confidence            35789999999999999999999887              899999997 7888 799999999999999999999999 


Q ss_pred             ceEEEeC--CeE--EEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-
Q 023375           89 IVKDVDS--QKL--ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-  162 (283)
Q Consensus        89 ~V~~v~~--~~v--~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-  162 (283)
                      +|++++.  +.+  ...+|+++++|.||+|+|.+|+ ++++.. ++++++|+|.||+++|+ +.|+|||+|||+..+.+ 
T Consensus       213 ~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~  290 (452)
T 2cdu_A          213 KVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHYNP  290 (452)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBC-SSTTEEECSTTBCEEETT
T ss_pred             eeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCc-CCCCEEEcceEEEecccc
Confidence            8999975  333  2347889999999999999999 566666 77778899999999999 99999999999976443 


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      .+....+++++.|.+||+++|+||.
T Consensus       291 ~g~~~~~~~~~~A~~~g~~aa~~i~  315 (452)
T 2cdu_A          291 TNSNAYIPLATNAVRQGRLVGLNLT  315 (452)
T ss_dssp             TTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             CCCeeecchHHHHHHHHHHHHHHhC
Confidence            1222246889999999999999985

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.91  E-value=4.8e-24  Score=197.35  Aligned_cols=152  Identities=28%  Similarity=0.455  Sum_probs=134.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  234 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFG--------------TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA  234 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4689999999999999999999887              899999997 8899999999999999999999999999 89


Q ss_pred             EEEeCC--eE--EEc---CCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQ--KL--ILN---DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~--~v--~~~---~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      ++++.+  .+  .++   +++++++|.||+|+|.+|+. +  ++.++++++++|++.||+++|+ +.|+|||+|||+.. 
T Consensus       235 ~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~-  312 (455)
T 1ebd_A          235 KGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVPG-  312 (455)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSSS-
T ss_pred             EEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCccc-CCCCEEEEeccCCC-
Confidence            998743  33  443   45689999999999999984 4  5677888888899999999998 89999999999952 


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              |++++.|.+||+++|+||..
T Consensus       313 --------~~~~~~A~~~g~~aa~~i~~  332 (455)
T 1ebd_A          313 --------PALAHKASYEGKVAAEAIAG  332 (455)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHTS
T ss_pred             --------cccHHHHHHHHHHHHHHHcC
Confidence                    67889999999999999863

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.91  E-value=6.9e-24  Score=198.50  Aligned_cols=152  Identities=25%  Similarity=0.377  Sum_probs=136.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|..++              .+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V  246 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELG--------------VPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARA  246 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4589999999999999999999887              899999998 8899999999999999999999999999 89


Q ss_pred             EEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.+    .+.+.+|+++++|.||+|+|.+|+. +  +++++++++++|+|.||+++|+ +.|+|||+|||+..    
T Consensus       247 ~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~----  321 (499)
T 1xdi_A          247 ASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTGL----  321 (499)
T ss_dssp             EEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBC-SSTTEEECSGGGTS----
T ss_pred             EEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCccc-CCCCEEEEeccCCC----
Confidence            999754    2455688899999999999999995 5  6778898888899999999999 89999999999952    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                           |+.++.|.+||+++|+||..
T Consensus       322 -----~~l~~~A~~~g~~aa~~i~g  341 (499)
T 1xdi_A          322 -----LPLASVAAMQGRIAMYHALG  341 (499)
T ss_dssp             -----CSCHHHHHHHHHHHHHHHTT
T ss_pred             -----cccHHHHHHHHHHHHHHhcC
Confidence                 67889999999999999863

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.91  E-value=7.1e-24  Score=196.85  Aligned_cols=153  Identities=24%  Similarity=0.356  Sum_probs=134.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHH-HhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l-~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .++|.+++++.+.+.+.| ++.||+++++ +
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~  238 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLG--------------AEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTK  238 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhC--------------CEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCE
Confidence            4689999999999999999999887              899999997 899999999999999999 9999999999 8


Q ss_pred             eEEEeCC----eEEEc--CC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           90 VKDVDSQ----KLILN--DG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        90 V~~v~~~----~v~~~--~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      |++++.+    .+.++  +|  +++++|.||+|+|.+|+. +  ++.++++.+++|+|.||+++|+ +.|+|||+|||+.
T Consensus       239 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~  317 (468)
T 2qae_A          239 VVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFET-SIPDVYAIGDVVD  317 (468)
T ss_dssp             EEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGBS
T ss_pred             EEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCccc-CCCCEEEeeccCC
Confidence            9999753    24554  66  679999999999999994 4  5778898888899999999998 8999999999995


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .        .|++++.|.+||+++|+||..
T Consensus       318 ~--------~~~~~~~A~~~g~~aa~~i~~  339 (468)
T 2qae_A          318 K--------GPMLAHKAEDEGVACAEILAG  339 (468)
T ss_dssp             S--------SCSCHHHHHHHHHHHHHHHTT
T ss_pred             C--------CCccHhHHHHHHHHHHHHHcC
Confidence            1        377899999999999999863

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.91  E-value=8.6e-24  Score=196.12  Aligned_cols=152  Identities=25%  Similarity=0.440  Sum_probs=136.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l~~~G--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  230 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLLRSFG--------------SEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAV  230 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4689999999999999999999887              899999997 8889999999999999999999999999 89


Q ss_pred             EEEeCC----eEEEcCCc-EEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375           91 KDVDSQ----KLILNDGT-EVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        91 ~~v~~~----~v~~~~g~-~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      ++++.+    .|++++|+ ++++|.||+|+|.+|+.  + +++++++++++|+|.||+++|+ +.|+|||+|||+.    
T Consensus       231 ~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~----  305 (463)
T 2r9z_A          231 AALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNT-NVPGVYALGDITG----  305 (463)
T ss_dssp             EEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBC-SSTTEEECGGGGT----
T ss_pred             EEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCcc-CCCCEEEEeecCC----
Confidence            998753    57778998 89999999999999984  3 5677888888899999999998 8999999999984    


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                           .+..++.|.+||+.+|.||..
T Consensus       306 -----~~~~~~~A~~~g~~aa~~i~g  326 (463)
T 2r9z_A          306 -----RDQLTPVAIAAGRRLAERLFD  326 (463)
T ss_dssp             -----SCCCHHHHHHHHHHHHHHHHS
T ss_pred             -----CcccHHHHHHHHHHHHHHHcC
Confidence                 267889999999999999863

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.91  E-value=8.5e-24  Score=194.44  Aligned_cols=158  Identities=25%  Similarity=0.376  Sum_probs=136.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||++|+|+|..|++.+              .+|+++++. .+++. +++++.+.+.+.+++.||+++++ +
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~  213 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKAN--------------MHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQ  213 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCE
Confidence            4689999999999999999999887              899999997 77775 89999999999999999999999 8


Q ss_pred             eEEEeC----C---eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           90 VKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        90 V~~v~~----~---~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      |++++.    +   .|++++|+++++|.||+|+|.+|+ ++++.++++.+ +| +.||+++|+ +.|+|||+|||+..+.
T Consensus       214 v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~t-s~~~IyA~GD~~~~~~  290 (431)
T 1q1r_A          214 VCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NG-IVINEHMQT-SDPLIMAVGDCARFHS  290 (431)
T ss_dssp             EEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EECCTTSBC-SSTTEEECGGGEEEEE
T ss_pred             EEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CC-EEECCCccc-CCCCEEEEEeEEEEcc
Confidence            999874    2   477889999999999999999998 68888898875 45 999999999 8999999999998654


Q ss_pred             CC-CCcCCCcchHHHHHHHHHHHHHHH
Q 023375          162 ST-GKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       162 ~~-~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      +. +......+++.|.+||+++|+||.
T Consensus       291 ~~~g~~~~~~~~~~A~~qg~~aa~~i~  317 (431)
T 1q1r_A          291 QLYDRWVRIESVPNALEQARKIAAILC  317 (431)
T ss_dssp             TTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             ccCCceEeeCHHHHHHHHHHHHHHHhc
Confidence            32 211224578899999999999986

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.91  E-value=7.9e-24  Score=196.40  Aligned_cols=152  Identities=26%  Similarity=0.330  Sum_probs=134.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       168 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v  233 (464)
T 2eq6_A          168 LPKRLLVIGGGAVGLELGQVYRRLG--------------AEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKA  233 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEE
Confidence            4589999999999999999999887              899999997 8899999999999999999999999999 89


Q ss_pred             EEEeCC----eEEEc-C--Cc--EEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           91 KDVDSQ----KLILN-D--GT--EVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        91 ~~v~~~----~v~~~-~--g~--~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      ++++.+    .++++ +  |+  ++++|.||+|+|.+|+. +  ++.++++.+++|++.||+++|+ +.|+|||+|||+.
T Consensus       234 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~  312 (464)
T 2eq6_A          234 VGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMET-SVPGVYAIGDAAR  312 (464)
T ss_dssp             EEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGTC
T ss_pred             EEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCccc-CCCCEEEEeccCC
Confidence            998643    25555 6  76  89999999999999984 3  4677888888899999999998 8999999999995


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .         |++++.|..||+.+|+||..
T Consensus       313 ~---------~~l~~~A~~~g~~aa~~i~g  333 (464)
T 2eq6_A          313 P---------PLLAHKAMREGLIAAENAAG  333 (464)
T ss_dssp             S---------SCCHHHHHHHHHHHHHHHTT
T ss_pred             C---------cccHHHHHHHHHHHHHHhcC
Confidence            2         67899999999999999863

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.91  E-value=3.6e-23  Score=191.91  Aligned_cols=151  Identities=23%  Similarity=0.373  Sum_probs=136.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..++.++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g--------------~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  234 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLG--------------VKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDII  234 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEE
Confidence            4689999999999999999999887              899999997 7889999999999999999999999999 89


Q ss_pred             EEEeCC-----eEE-EcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           91 KDVDSQ-----KLI-LNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        91 ~~v~~~-----~v~-~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      ++++.+     .|+ +++|+ +++|.||+|+|.+|+..   ++.++++++++|++.||+++|+ +.|+|||+|||+.   
T Consensus       235 ~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~iya~GD~~~---  309 (463)
T 4dna_A          235 QSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRT-STPGIYALGDVTD---  309 (463)
T ss_dssp             EEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSGGGS---
T ss_pred             EEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCC-CCCCEEEEEecCC---
Confidence            998753     466 77887 99999999999999953   6778999999999999999997 9999999999995   


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                            .+++++.|..||+++|+||..
T Consensus       310 ------~~~~~~~A~~~g~~aa~~i~g  330 (463)
T 4dna_A          310 ------RVQLTPVAIHEAMCFIETEYK  330 (463)
T ss_dssp             ------SCCCHHHHHHHHHHHHHHHHS
T ss_pred             ------CCCChHHHHHHHHHHHHHHcC
Confidence                  278899999999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.91  E-value=1.9e-23  Score=194.57  Aligned_cols=160  Identities=21%  Similarity=0.386  Sum_probs=139.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++|+|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  250 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELG--------------KKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENV  250 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTT--------------CEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEE
Confidence            6789999999999999999999887              899999997 7889999999999999999999999999 89


Q ss_pred             EEEeCCe----EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC-C
Q 023375           91 KDVDSQK----LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST-G  164 (283)
Q Consensus        91 ~~v~~~~----v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~-~  164 (283)
                      ++++.+.    +.+ +++++++|.||+|+|.+|+ ++++.++++++++|+|.||+++|+ +.|+|||+|||+..+... +
T Consensus       251 ~~i~~~~~v~~v~~-~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~t-s~p~IyA~GD~~~~~~~~~g  328 (480)
T 3cgb_A          251 KAFKGNERVEAVET-DKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQT-NVQDVYAAGDCATHYHVIKE  328 (480)
T ss_dssp             EEEEESSBEEEEEE-TTEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBC-SSTTEEECGGGBCEEBTTTC
T ss_pred             EEEEcCCcEEEEEE-CCCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccC-CCCCEEEeeeEEEecCCCCC
Confidence            9987542    334 4568999999999999998 578888898888899999999999 899999999999765432 2


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      ....+++++.|..||+++|+||..
T Consensus       329 ~~~~~~~~~~A~~qg~~aa~~i~g  352 (480)
T 3cgb_A          329 IHDHIPIGTTANKQGRLAGLNMLD  352 (480)
T ss_dssp             SEECCCCHHHHHHHHHHHHHHHTT
T ss_pred             cceecchHHHHHHHHHHHHHHhcC
Confidence            223467899999999999999863

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.91  E-value=1.6e-23  Score=191.08  Aligned_cols=164  Identities=21%  Similarity=0.307  Sum_probs=141.3

Q ss_pred             CeEEEEccC-------------------c------HHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHH
Q 023375           15 LHCVVVGGG-------------------P------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR   69 (283)
Q Consensus        15 ~~vvVvGgG-------------------~------~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~   69 (283)
                      .+++|||+|                   .      .|+|+|..+++..++      ...+++.+|+++++..+++.+++.
T Consensus       146 ~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~------~g~~~~~~v~~~~~~~~l~~~~~~  219 (409)
T 3h8l_A          146 GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKK------KGMLDKVHVTVFSPGEYLSDLSPN  219 (409)
T ss_dssp             SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHT------TTCTTTEEEEEECSSSSSTTBCHH
T ss_pred             CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHH------cCCCCCeEEEEEeCCccccccCHH
Confidence            577899999                   2      589999888765421      111234699999998788889999


Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCchhhhccCCC-CCCCCccccCCCcccCCC
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP-KSPGGRIGIDEWLRVPSV  147 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~-~~~~g~i~Vd~~l~~~~~  147 (283)
                      +.+.+.+.+++.||+++++ +|++++++.|++++|+++++|.+|+++|.+|++++.+++.. .+++|++.||+++|++++
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~~~~~  299 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKY  299 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSBBSSC
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCcccccCCC
Confidence            9999999999999999999 89999999999999999999999999999999888887333 367799999999999899


Q ss_pred             CCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          148 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       148 ~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ||||++|||+.+       +.|++++.|..||+++|+||...+.
T Consensus       300 ~~vfa~GD~~~~-------~~~~~~~~A~~q~~~aa~~i~~~l~  336 (409)
T 3h8l_A          300 DNVYAVGDANSM-------TVPKLGYLAVMTGRIAAQHLANRLG  336 (409)
T ss_dssp             TTEEECGGGBTT-------CCSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEeehhccC-------CCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999974       3588999999999999999998873

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.91  E-value=8e-24  Score=197.80  Aligned_cols=163  Identities=18%  Similarity=0.250  Sum_probs=135.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-CCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||++|+|+|..|++.+++          .+.+|+++++. .++ +.+++.+.+.+.+.+++.||+++++ +
T Consensus       179 ~~~~vvViGgG~iG~E~A~~l~~~~~~----------~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~  248 (493)
T 1m6i_A          179 EVKSITIIGGGFLGSELACALGRKARA----------LGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAI  248 (493)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHH----------HTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhhhh----------cCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCE
Confidence            478999999999999999999886421          02789999986 444 4578899999999999999999999 8


Q ss_pred             eEEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCC-CCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           90 VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        90 V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~-~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      |++++.  +  .|++.+|+++++|.||+|+|.+|+ .+++.+++++++ +|++.||+++|+  .|+|||+|||+..+++.
T Consensus       249 V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t--~~~IyA~GD~a~~~~~~  326 (493)
T 1m6i_A          249 VQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA--RSNIWVAGDAACFYDIK  326 (493)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE--ETTEEECGGGEEEEETT
T ss_pred             EEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc--CCCeeEeeeeEeccCcc
Confidence            999864  2  477889999999999999999999 477788888875 688999999997  59999999999865542


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      .+.....+++.|..||+++|+||.
T Consensus       327 ~g~~~~~~~~~A~~qg~~aa~ni~  350 (493)
T 1m6i_A          327 LGRRRVEHHDHAVVSGRLAGENMT  350 (493)
T ss_dssp             TEEECCCCHHHHHHHHHHHHHHHT
T ss_pred             cCccccchHHHHHHHHHHHHHHhc
Confidence            222345678899999999999986

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.91  E-value=4.1e-23  Score=194.41  Aligned_cols=154  Identities=24%  Similarity=0.318  Sum_probs=134.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      +-+++++|||||++|+|+|..++.++              .+||++++.++||.+++++++.+.+.|++.||+++++ .+
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG--------------~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v  286 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLG--------------YDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILP  286 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHT--------------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcC--------------CeEEEecccccccccchhHHHHHHHHHHhhcceeecceEE
Confidence            35689999999999999999999998              8999999888999999999999999999999999999 78


Q ss_pred             EEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCc-cccCCCcccCCCCCEEEeccccccCcC
Q 023375           91 KDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGR-IGIDEWLRVPSVQDVFAVGDCSGYLES  162 (283)
Q Consensus        91 ~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~-i~Vd~~l~~~~~~~VfaiGD~a~~~~~  162 (283)
                      ++++.+    .|.+.+++++.+|.|++|+|.+||. .  ++..++.++.++. +.||+++|| +.|+|||+|||+.    
T Consensus       287 ~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T-s~p~IyAiGDv~~----  361 (542)
T 4b1b_A          287 KKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT-NIPSIFAVGDVAE----  361 (542)
T ss_dssp             EEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC-SSTTEEECTTSBT----
T ss_pred             EEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc-cCCCeEEeccccC----
Confidence            887643    3667788899999999999999994 2  4455777766555 588899998 9999999999984    


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                          ..|.+++.|..||+++++|+..
T Consensus       362 ----~~p~La~~A~~eg~~aa~~i~g  383 (542)
T 4b1b_A          362 ----NVPELAPVAIKAGEILARRLFK  383 (542)
T ss_dssp             ----TCCCCHHHHHHHHHHHHHHHHS
T ss_pred             ----CchhHHHHHHHHHHHHHHHHhc
Confidence                2478999999999999999864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.91  E-value=1.1e-23  Score=191.54  Aligned_cols=203  Identities=14%  Similarity=0.166  Sum_probs=147.7

Q ss_pred             cHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC--CCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC----
Q 023375           24 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI--LSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS----   95 (283)
Q Consensus        24 ~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~--l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~----   95 (283)
                      ..+.|.+.++++..+.    .    ..+.+|++++.. .+  ++.+++.+.+.+.+.+++.||+++++ +++.++.    
T Consensus       163 ~a~~e~~~~~a~~~~~----~----~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~  234 (401)
T 3vrd_B          163 PGPYERASQIAHYLKA----H----KSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEA  234 (401)
T ss_dssp             THHHHHHHHHHHHHHH----H----CTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTT
T ss_pred             hHHHHHHHHHHHHHHh----c----CCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccc
Confidence            4567777777765422    1    123799999987 43  34466777777777888999999998 6766643    


Q ss_pred             CeEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCC-cccCCCCCEEEeccccccCcCCCCcCCCcchHH
Q 023375           96 QKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV  174 (283)
Q Consensus        96 ~~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~-l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~  174 (283)
                      ..+++++|+++++|+++|++|.+|+++++++++ .+++|+|.||++ ||++++|||||+|||+..      .+.|++++.
T Consensus       235 ~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~------~~~pk~a~~  307 (401)
T 3vrd_B          235 MTVETSFGETFKAAVINLIPPQRAGKIAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNA------APMPKSAYS  307 (401)
T ss_dssp             TEEEETTSCEEECSEEEECCCEEECHHHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCC------TTSCBSHHH
T ss_pred             eEEEcCCCcEEEeeEEEEecCcCCchhHhhccc-cccCCCEEECCCcceecCCCCEEEecccccC------CCCCchHHH
Confidence            268899999999999999999999999999998 477899999976 887799999999999952      357999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEE-EecCcceeEecccc----------ccCCCeeeecH
Q 023375          175 AERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMA-TIGRYKALVDLRQN----------KESKGLSLAGF  243 (283)
Q Consensus       175 A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~-slG~~~av~~~~~~----------~~~~~~~~~G~  243 (283)
                      |.+||+++|+||.+.++   |+       ++ .++.|...+.|. ..|....+...+.+          +...+....++
T Consensus       308 A~~qa~v~A~ni~~~l~---G~-------~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  376 (401)
T 3vrd_B          308 ANSQAKVAAAAVVALLK---GE-------EP-GTPSYLNTCYSILAPGYGISIAAVYRPNAEGKAIEAVPDSGGITPVDA  376 (401)
T ss_dssp             HHHHHHHHHHHHHHHHH---TC-------CC-CCCCEEEEEEEEEETTEEEEEEEEEEECTTSSSEEECTTCCEESCTTC
T ss_pred             HHHHHHHHHHHHHHHhc---CC-------CC-CCcccCCeEEEEEecCCceEEEEEecccCCCceEEEecccCCcccccc
Confidence            99999999999999987   44       22 566676655442 22222222211111          01134566788


Q ss_pred             HHHHHHHHH
Q 023375          244 LSWLVWRSA  252 (283)
Q Consensus       244 ~a~~~~~~~  252 (283)
                      .+|++|+-.
T Consensus       377 ~~~~~~~~~  385 (401)
T 3vrd_B          377 PDWVLEREV  385 (401)
T ss_dssp             CHHHHHHHH
T ss_pred             hhHHHhccc
Confidence            899887643

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.91  E-value=4.9e-23  Score=192.45  Aligned_cols=152  Identities=18%  Similarity=0.222  Sum_probs=135.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. ++++.+++++.+.+.+.|++. |+++++ +|
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v  237 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLG--------------VIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARV  237 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTT--------------CEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEE
Confidence            4689999999999999999999987              899999998 889999999999999999998 999999 89


Q ss_pred             EEEeCC--e--EEEc--CC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccC-CCcccCCCCCEEEeccccc
Q 023375           91 KDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGID-EWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        91 ~~v~~~--~--v~~~--~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd-~~l~~~~~~~VfaiGD~a~  158 (283)
                      ++++.+  .  +.+.  +|  +++++|.||+|+|.+|+. +  ++.++++.+++|++.|| +++|+ +.|+|||+|||+.
T Consensus       238 ~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t-~~~~IyA~GD~~~  316 (492)
T 3ic9_A          238 ISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQT-SVDHIFVAGDANN  316 (492)
T ss_dssp             EEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBC-SSTTEEECGGGGT
T ss_pred             EEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccC-CCCCEEEEEecCC
Confidence            998643  3  4454  67  689999999999999994 4  67789999999999999 99999 8999999999995


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                      .         ++.++.|..||+++|.||...
T Consensus       317 ~---------~~~~~~A~~~g~~aa~~i~~~  338 (492)
T 3ic9_A          317 T---------LTLLHEAADDGKVAGTNAGAY  338 (492)
T ss_dssp             S---------SCSHHHHHHHHHHHHHHHHHT
T ss_pred             C---------CccHHHHHHHHHHHHHHHcCC
Confidence            2         778999999999999999863

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.91  E-value=2.9e-23  Score=192.11  Aligned_cols=152  Identities=27%  Similarity=0.369  Sum_probs=135.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++.+              .+|+++++. .++|.+++++.+.+.+.+++.||+++++ +|
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g--------------~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V  231 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLG--------------AEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRV  231 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence            4589999999999999999999887              899999997 7899999999999999999999999999 89


Q ss_pred             EEEeCC--e--EEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~~--~--v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.+  .  +.+++|+++++|.||+|+|.+|+. +  ++.++++.+++|++.||+++|+ +.|+||++|||+..    
T Consensus       232 ~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~----  306 (455)
T 2yqu_A          232 TAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT-RVPHIYAIGDVVRG----  306 (455)
T ss_dssp             EEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBC-SSTTEEECGGGSSS----
T ss_pred             EEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCccc-CCCCEEEEecCCCC----
Confidence            998643  3  455688899999999999999984 3  5677888887899999999998 89999999999852    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                           |++++.|..||+.+|+||..
T Consensus       307 -----~~~~~~A~~~g~~aa~~i~~  326 (455)
T 2yqu_A          307 -----PMLAHKASEEGIAAVEHMVR  326 (455)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHH
T ss_pred             -----ccCHHHHHHhHHHHHHHHcC
Confidence                 67899999999999999975

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.91  E-value=8.3e-23  Score=190.67  Aligned_cols=153  Identities=22%  Similarity=0.386  Sum_probs=133.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .+++++|||||++|+|+|..|++++              .+|+++++..+++.+++++.+.+.+.|++.||+++++ +++
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~  249 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIG--------------LDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPS  249 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--------------CceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            4578999999999999999999987              8999999988899999999999999999999999999 888


Q ss_pred             EEeC---C--eEEEcC---Cc--EEEeeEEEEcCCCCCch-h--hhccCCCCC-CCCccccCCCcccCCCCCEEEecccc
Q 023375           92 DVDS---Q--KLILND---GT--EVPYGLLVWSTGVGPST-L--VKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDCS  157 (283)
Q Consensus        92 ~v~~---~--~v~~~~---g~--~i~~d~vi~a~G~~~~~-~--~~~~~l~~~-~~g~i~Vd~~l~~~~~~~VfaiGD~a  157 (283)
                      +++.   +  .+++.+   |+  ++++|.|++|+|.+|+. +  ++..+++++ ++|++.||+++|+ +.|+|||+|||+
T Consensus       250 ~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  328 (488)
T 3dgz_A          250 HIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEAT-SVPHIYAIGDVA  328 (488)
T ss_dssp             EEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBC-SSTTEEECGGGB
T ss_pred             EEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCcc-CCCCEEEeEEec
Confidence            8853   2  255544   54  47999999999999984 4  567789888 7899999999998 999999999998


Q ss_pred             ccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          158 GYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       158 ~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .        ..|..++.|..||+++|+||..
T Consensus       329 ~--------~~~~~~~~A~~~g~~aa~~i~g  351 (488)
T 3dgz_A          329 E--------GRPELTPTAIKAGKLLAQRLFG  351 (488)
T ss_dssp             T--------TCCCCHHHHHHHHHHHHHHHHS
T ss_pred             C--------CCCcchhHHHHHHHHHHHHHcC
Confidence            4        2378899999999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.90  E-value=9.1e-23  Score=190.14  Aligned_cols=152  Identities=22%  Similarity=0.330  Sum_probs=134.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++..+++.+++++.+.+.+.|++.||+++++ +|+
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~  251 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLG--------------YEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPL  251 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC--------------CEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence            4579999999999999999999987              8999999988899999999999999999999999999 899


Q ss_pred             EEeC--C---eEEEcCCc-----EEEeeEEEEcCCCCCch-hh--hccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           92 DVDS--Q---KLILNDGT-----EVPYGLLVWSTGVGPST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        92 ~v~~--~---~v~~~~g~-----~i~~d~vi~a~G~~~~~-~~--~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      +++.  +   .|++.+++     ++++|.|++|+|.+|+. ++  +.++++.++ |++.||+++|+ +.|+|||+|||+.
T Consensus       252 ~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t-~~~~IyA~GD~~~  329 (483)
T 3dgh_A          252 SVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEAT-NVANIYAVGDIIY  329 (483)
T ss_dssp             EEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBC-SSTTEEECSTTBT
T ss_pred             EEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCcc-CCCCEEEEEcccC
Confidence            8864  2   26666553     79999999999999984 43  677898888 99999999998 8999999999984


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              ..|..++.|..||+++|+||..
T Consensus       330 --------~~~~~~~~A~~~g~~aa~~i~g  351 (483)
T 3dgh_A          330 --------GKPELTPVAVLAGRLLARRLYG  351 (483)
T ss_dssp             --------TSCCCHHHHHHHHHHHHHHHHS
T ss_pred             --------CCCccHHHHHHHHHHHHHHHcC
Confidence                    2378899999999999999863

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.90  E-value=1e-22  Score=189.47  Aligned_cols=153  Identities=29%  Similarity=0.417  Sum_probs=135.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v  251 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALG--------------SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV  251 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            3589999999999999999999887              899999997 8899999999999999999999999999 89


Q ss_pred             EEEeCC--e----EEEcC---C----cEEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEec
Q 023375           91 KDVDSQ--K----LILND---G----TEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG  154 (283)
Q Consensus        91 ~~v~~~--~----v~~~~---g----~~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiG  154 (283)
                      ++++.+  +    +.+.+   |    +++++|.||+|+|.+|+.  + ++.++++++++|++.||+++|+ +.|+|||+|
T Consensus       252 ~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~G  330 (478)
T 3dk9_A          252 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVG  330 (478)
T ss_dssp             EEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC-SSTTEEECG
T ss_pred             EEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc-CCCCEEEEE
Confidence            998642  3    55554   2    679999999999999995  3 6778999989999999999999 999999999


Q ss_pred             cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                      ||+.         .|..++.|..||+++|+||...
T Consensus       331 D~~~---------~~~~~~~A~~~g~~aa~~i~~~  356 (478)
T 3dk9_A          331 DVCG---------KALLTPVAIAAGRKLAHRLFEY  356 (478)
T ss_dssp             GGGC---------SSCCHHHHHHHHHHHHHHHHSC
T ss_pred             ecCC---------CCccHhHHHHHHHHHHHHHcCC
Confidence            9993         2788999999999999998743

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.90  E-value=6.7e-23  Score=190.65  Aligned_cols=153  Identities=24%  Similarity=0.349  Sum_probs=135.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +
T Consensus       178 ~~~~~v~ViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~  243 (476)
T 3lad_A          178 NVPGKLGVIGAGVIGLELGSVWARLG--------------AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGAR  243 (476)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCE
Confidence            34689999999999999999999887              899999998 8999999999999999999999999999 8


Q ss_pred             eEEEeCC----eEEEcCC---cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           90 VKDVDSQ----KLILNDG---TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        90 V~~v~~~----~v~~~~g---~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      |++++.+    .+++.++   +++++|.||+|+|.+|+.   .++.++++++++|++.||+++|+ +.|+|||+|||+. 
T Consensus       244 v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~-  321 (476)
T 3lad_A          244 VTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGDVVR-  321 (476)
T ss_dssp             EEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGGGSS-
T ss_pred             EEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCccc-CCCCEEEEEccCC-
Confidence            9998743    3566654   679999999999999984   26677888888999999999998 9999999999994 


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                              .|.+++.|..||+++|+||..
T Consensus       322 --------~~~~~~~A~~~g~~aa~~i~g  342 (476)
T 3lad_A          322 --------GAMLAHKASEEGVVVAERIAG  342 (476)
T ss_dssp             --------SCCCHHHHHHHHHHHHHHHHH
T ss_pred             --------CcccHHHHHHHHHHHHHHhcC
Confidence                    277899999999999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.90  E-value=3.1e-23  Score=183.75  Aligned_cols=155  Identities=14%  Similarity=0.178  Sum_probs=134.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++|+|||+|++|+|+|..|++.+              .+|+++++. .+++  .+...+.+.+.+++.||+++.+ +|
T Consensus       151 ~~~~v~viG~G~~g~e~a~~l~~~g--------------~~V~~v~~~~~~~~--~~~~~~~l~~~l~~~gv~v~~~~~v  214 (335)
T 2zbw_A          151 QGKRVLIVGGGDSAVDWALNLLDTA--------------RRITLIHRRPQFRA--HEASVKELMKAHEEGRLEVLTPYEL  214 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTS--------------SEEEEECSSSSCCS--CHHHHHHHHHHHHTTSSEEETTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEcCCccCc--cHHHHHHHHhccccCCeEEecCCcc
Confidence            5689999999999999999998876              899999997 5544  2567788888899999999999 89


Q ss_pred             EEEeCC----eEEEc---CC--cEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQ----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~----~v~~~---~g--~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      ++++.+    .|+++   +|  +++++|.||+|+|.+|+ ++++.++++.+ +|++.||+++|+ +.|+|||+|||+..+
T Consensus       215 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~  292 (335)
T 2zbw_A          215 RRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALE-KNKIKVDTTMAT-SIPGVYACGDIVTYP  292 (335)
T ss_dssp             EEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEE-TTEEECCTTCBC-SSTTEEECSTTEECT
T ss_pred             eeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceecc-CCeeeeCCCCCC-CCCCEEEeccccccC
Confidence            999765    57776   67  67999999999999998 58888888876 689999999998 899999999999752


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .      .++++..|..||+++|+||...+.
T Consensus       293 ~------~~~~~~~A~~~g~~aa~~i~~~l~  317 (335)
T 2zbw_A          293 G------KLPLIVLGFGEAAIAANHAAAYAN  317 (335)
T ss_dssp             T------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             c------chhhhhhhHHHHHHHHHHHHHHhh
Confidence            1      378899999999999999998875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.90  E-value=2.5e-23  Score=194.36  Aligned_cols=153  Identities=26%  Similarity=0.389  Sum_probs=135.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...++++|||||++|+|+|..|++++              .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +
T Consensus       196 ~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~  261 (491)
T 3urh_A          196 KVPASMIVVGGGVIGLELGSVWARLG--------------AKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAK  261 (491)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCe
Confidence            34689999999999999999999887              899999997 8999999999999999999999999999 8


Q ss_pred             eEEEeCC--e--EEEcC---C--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEecccc
Q 023375           90 VKDVDSQ--K--LILND---G--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS  157 (283)
Q Consensus        90 V~~v~~~--~--v~~~~---g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a  157 (283)
                      |++++.+  .  +.+++   |  +++++|.||+|+|.+|+. +  ++..+++++++|++.||+++|+ +.|+|||+|||+
T Consensus       262 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  340 (491)
T 3urh_A          262 VTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIGDVV  340 (491)
T ss_dssp             EEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGS
T ss_pred             EEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCC-CCCCEEEEEecC
Confidence            9888643  2  55542   4  689999999999999994 3  6677899998999999999999 999999999999


Q ss_pred             ccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          158 GYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       158 ~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .         .|++++.|..||+.+|+||..
T Consensus       341 ~---------~~~~~~~A~~~g~~aa~~i~g  362 (491)
T 3urh_A          341 R---------GPMLAHKAEDEGVAVAEIIAG  362 (491)
T ss_dssp             S---------SCCCHHHHHHHHHHHHHHHTT
T ss_pred             C---------CccchhHHHHHHHHHHHHHcC
Confidence            4         278999999999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.90  E-value=5.6e-24  Score=192.90  Aligned_cols=144  Identities=19%  Similarity=0.344  Sum_probs=128.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .++|+|||||++|+|+|..|++.+              .+|+++++. .+++. +++++.+.+.+.+++.||+++++ +|
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v  211 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSG--------------TPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF  211 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            689999999999999999999887              899999997 78876 89999999999999999999998 77


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCC
Q 023375           91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP  169 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p  169 (283)
                      +++         |+++++|.||+++|.+|+ ++++.++++.+ +| +.||+++|+ +.|+|||+|||+.+++     +.+
T Consensus       212 ~~i---------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~g-i~vd~~~~t-~~~~IyA~GD~a~~~~-----~~~  274 (385)
T 3klj_A          212 EEM---------GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RG-ILVNDHMET-SIKDIYACGDVAEFYG-----KNP  274 (385)
T ss_dssp             GGC---------HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SS-EEECTTCBC-SSTTEEECGGGEEETT-----BCC
T ss_pred             EEc---------CeEEecCeEEECcCcccChhhhhhcCCCcC-CC-EEECCCccc-CCCCEEEEEeeEecCC-----Ccc
Confidence            766         677999999999999999 68888888775 45 999999999 9999999999998642     347


Q ss_pred             cchHHHHHHHHHHHHHHHH
Q 023375          170 ALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       170 ~~~~~A~~qg~~~a~~i~~  188 (283)
                      .+++.|.+||+.+|+||..
T Consensus       275 ~~~~~A~~qg~~aa~~i~g  293 (385)
T 3klj_A          275 GLINIANKQGEVAGLNACG  293 (385)
T ss_dssp             CCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHhcC
Confidence            7899999999999999864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.90  E-value=6.8e-23  Score=185.57  Aligned_cols=153  Identities=23%  Similarity=0.356  Sum_probs=133.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|++.+              .+|+++++. .+++. +++.+.+.+.+.+++.||+++++ +
T Consensus       144 ~~~~v~ViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~  209 (384)
T 2v3a_A          144 GKRRVLLLGAGLIGCEFANDLSSGG--------------YQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPV  209 (384)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCE
Confidence            4789999999999999999999887              899999997 77776 48999999999999999999999 8


Q ss_pred             eEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375           90 VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG  164 (283)
Q Consensus        90 V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~  164 (283)
                      |++++.+    .+++++|+++++|.||+|+|.+|+. +++.++++.+ +| +.||+++|+ +.|+|||+|||+....   
T Consensus       210 v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~-~g-i~vd~~~~t-~~~~IyA~GD~~~~~~---  283 (384)
T 2v3a_A          210 LASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN-RG-IVVDRSLRT-SHANIYALGDCAEVDG---  283 (384)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBS-SS-EEECTTCBC-SSTTEEECGGGEEETT---
T ss_pred             EEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCC-CC-EEECCCCCC-CCCCEEEeeeeeeECC---
Confidence            9998643    4777889999999999999999994 7888899887 57 999999998 8999999999996421   


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                        ...+.++.|..||+++|+||.
T Consensus       284 --~~~~~~~~a~~~g~~~a~~i~  304 (384)
T 2v3a_A          284 --LNLLYVMPLMACARALAQTLA  304 (384)
T ss_dssp             --BCCCSHHHHHHHHHHHHHHHT
T ss_pred             --CCcchHHHHHHHHHHHHHHhc
Confidence              123457789999999999986

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.90  E-value=2.9e-23  Score=191.99  Aligned_cols=160  Identities=23%  Similarity=0.371  Sum_probs=135.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ...++++|||||++|+|+|..|++++              .+|+++++. .+++. +++++.+.+.+.+++.||+++++ 
T Consensus       145 ~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~  210 (452)
T 3oc4_A          145 ENSQTVAVIGAGPIGMEAIDFLVKMK--------------KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEE  210 (452)
T ss_dssp             HTCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETC
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            46789999999999999999999887              899999997 78886 89999999999999999999999 


Q ss_pred             ceEEEe--CCe--EEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-
Q 023375           89 IVKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-  162 (283)
Q Consensus        89 ~V~~v~--~~~--v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-  162 (283)
                      +|++++  ++.  |.++++ ++++|.||+|+|.+|+. ++.. .++++++|++.||+++|+ +.|+|||+|||+..+.+ 
T Consensus       211 ~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~-~~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~  287 (452)
T 3oc4_A          211 TVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMNEP  287 (452)
T ss_dssp             CEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCT-TSCBCTTSCBCCCTTCBC-SSTTEEECGGGBCEEEGG
T ss_pred             EEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHh-hhccCCCCCEEECcCccC-CCCCEEEEEeeEEecccc
Confidence            899997  333  566666 89999999999999994 4443 377788899999999999 89999999999975432 


Q ss_pred             CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          163 TGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       163 ~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .+....+++++.|..||+++|+||..
T Consensus       288 ~~~~~~~~~~~~A~~~g~~aa~~i~g  313 (452)
T 3oc4_A          288 VAETFYAPLVNNAVRTGLVVANNLEE  313 (452)
T ss_dssp             GTEEECCCCHHHHHHHHHHHTTSSSS
T ss_pred             CCceeecchHHHHHHHHHHHHHHhcC
Confidence            12223467899999999999999753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.90  E-value=9.3e-23  Score=189.29  Aligned_cols=148  Identities=22%  Similarity=0.324  Sum_probs=131.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCC-CHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSF-DDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~-~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. ++++.+ ++++.+.+.+.|+   |+++++ +
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~  233 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMG--------------VQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSP  233 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCE
Confidence            4579999999999999999999887              899999997 889888 9999999988887   999999 8


Q ss_pred             eEEEeC---Ce--EEEc--CCc--EEEeeEEEEcCCCCCchh--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           90 VKDVDS---QK--LILN--DGT--EVPYGLLVWSTGVGPSTL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        90 V~~v~~---~~--v~~~--~g~--~i~~d~vi~a~G~~~~~~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      |++++.   +.  +.++  +|+  ++++|.||+|+|.+|+..  ++.++++++++| +.||+++|+ +.|+|||+|||+.
T Consensus       234 v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~~t-~~~~Iya~GD~~~  311 (466)
T 3l8k_A          234 VTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETMKT-NIPNVFATGDANG  311 (466)
T ss_dssp             EEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTCBC-SSTTEEECGGGTC
T ss_pred             EEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCccC-CCCCEEEEEecCC
Confidence            998876   33  5666  565  899999999999999954  678899999899 999999999 9999999999995


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      .         |++++.|..||+++|+||..
T Consensus       312 ~---------~~~~~~A~~~g~~aa~~i~~  332 (466)
T 3l8k_A          312 L---------APYYHAAVRMSIAAANNIMA  332 (466)
T ss_dssp             S---------CCSHHHHHHHHHHHHHHHHT
T ss_pred             C---------CccHhHHHHHHHHHHHHHhC
Confidence            2         78899999999999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.90  E-value=7.2e-23  Score=190.91  Aligned_cols=152  Identities=26%  Similarity=0.384  Sum_probs=138.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++.+              .+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V  255 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLG--------------VKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATV  255 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcC--------------CeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4689999999999999999999887              899999997 8899999999999999999999999998 89


Q ss_pred             EEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.+    .|++++|+++++|.||+|+|.+|+. +  ++..+++++++|++.||+++|+ +.|+|||+|||+.     
T Consensus       256 ~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~-----  329 (484)
T 3o0h_A          256 SQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTT-NVSHIWAVGDVTG-----  329 (484)
T ss_dssp             EEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGT-----
T ss_pred             EEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCC-CCCCEEEEEecCC-----
Confidence            998764    4778899999999999999999995 3  5778899999999999999998 9999999999985     


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                          .+++++.|..||+++|+||..
T Consensus       330 ----~~~~~~~A~~~g~~aa~~i~~  350 (484)
T 3o0h_A          330 ----HIQLTPVAIHDAMCFVKNAFE  350 (484)
T ss_dssp             ----SCCCHHHHHHHHHHHHHHHHC
T ss_pred             ----CCcCHHHHHHHHHHHHHHHcC
Confidence                278899999999999999874

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.90  E-value=6e-23  Score=189.57  Aligned_cols=158  Identities=28%  Similarity=0.410  Sum_probs=135.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++++|||||++|+|+|..|++.+              .+|+++++. .+++ .+++++.+.+.+.+++.||+++++ +
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~  213 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAG--------------KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGET  213 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCE
Confidence            6789999999999999999999887              899999997 7887 689999999999999999999999 8


Q ss_pred             eEEEeCCe----EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-C
Q 023375           90 VKDVDSQK----LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-T  163 (283)
Q Consensus        90 V~~v~~~~----v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-~  163 (283)
                      |++++.+.    +.+ +++++++|.||+|+|.+|+ ++++.. ++.+.+|++.||+++|+ +.|+|||+|||+..+.. .
T Consensus       214 v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t-~~~~Iya~GD~~~~~~~~~  290 (447)
T 1nhp_A          214 VERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPA  290 (447)
T ss_dssp             EEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBC-SSTTEEECGGGSCEEEGGG
T ss_pred             EEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccC-CCCCEEEeeeEEEeeccCC
Confidence            99997652    444 5678999999999999998 566666 77777899999999999 89999999999975432 1


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      +....+++++.|.+||+++|+||.
T Consensus       291 g~~~~~~~~~~A~~qg~~aa~~i~  314 (447)
T 1nhp_A          291 DTEVNIALATNARKQGRFAVKNLE  314 (447)
T ss_dssp             TEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             CCceechhHHHHHHHHHHHHHhhc
Confidence            222246789999999999999985

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.90  E-value=4.2e-23  Score=191.25  Aligned_cols=151  Identities=31%  Similarity=0.459  Sum_probs=133.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++.+              .+|+++++. .++|.+++++.+.+.+.+++.||+++++ +|
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  235 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLG--------------AQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSV  235 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCC--------------CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence            3579999999999999999999887              899999997 8899999999999999999999999999 89


Q ss_pred             EEEeCCeEEEc--CC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDSQKLILN--DG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~~~v~~~--~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.+.+.+.  +|  +++++|.||+|+|.+|+. +  ++.++++.+++ ++.||+++|+ +.|+|||+|||+..    
T Consensus       236 ~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t-~~~~Iya~GD~~~~----  309 (458)
T 1lvl_A          236 EGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQT-SMHNVWAIGDVAGE----  309 (458)
T ss_dssp             EEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBC-SSTTEEECGGGGCS----
T ss_pred             EEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcC-CCCCEEEeeccCCC----
Confidence            99987545554  56  689999999999999994 3  57778887776 8999999998 89999999999952    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                           |++++.|..||+.+|+||..
T Consensus       310 -----~~~~~~A~~~g~~aa~~i~g  329 (458)
T 1lvl_A          310 -----PMLAHRAMAQGEMVAEIIAG  329 (458)
T ss_dssp             -----SCCHHHHHHHHHHHHHHHTT
T ss_pred             -----cccHHHHHHHHHHHHHHhcC
Confidence                 67899999999999999863

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.89  E-value=1.4e-22  Score=188.07  Aligned_cols=150  Identities=21%  Similarity=0.292  Sum_probs=132.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++. .++| +++++.+.+.+.+++.||+++++ +|
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v  239 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLG--------------SKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQA  239 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCCE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCEE
Confidence            4689999999999999999999887              899999997 8888 99999999999999999999999 89


Q ss_pred             EEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           91 KDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        91 ~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++++.+    .|.++ ++++++|.||+|+|.+|+. +  ++.++++.+++|++.||+++|+ +.|+|||+|||+..    
T Consensus       240 ~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~----  313 (467)
T 1zk7_A          240 SQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTDQ----  313 (467)
T ss_dssp             EEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSTTBSS----
T ss_pred             EEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCccc-CCCCEEEEeccCCC----
Confidence            988643    24454 5689999999999999984 2  4677888888899999999998 89999999999953    


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                           |..++.|.+||+++|.||..
T Consensus       314 -----~~~~~~A~~~g~~aa~~i~~  333 (467)
T 1zk7_A          314 -----PQFVYVAAAAGTRAAINMTG  333 (467)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHTT
T ss_pred             -----cccHHHHHHHHHHHHHHHcC
Confidence                 66789999999999999853

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.89  E-value=4.9e-22  Score=186.83  Aligned_cols=153  Identities=20%  Similarity=0.330  Sum_probs=131.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      ..++++|||||++|+|+|..|++++              .+|+++++..+++.+++++.+.+.+.|++.||+++++ +++
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l~~~G--------------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~  274 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFLAGIG--------------LDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPI  274 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEE
Confidence            4578999999999999999999987              8999999988999999999999999999999999998 666


Q ss_pred             EEeC------Ce--EEE--cCC-c--EEEeeEEEEcCCCCCch-h--hhccCCCCC-CCCccccCCCcccCCCCCEEEec
Q 023375           92 DVDS------QK--LIL--NDG-T--EVPYGLLVWSTGVGPST-L--VKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVG  154 (283)
Q Consensus        92 ~v~~------~~--v~~--~~g-~--~i~~d~vi~a~G~~~~~-~--~~~~~l~~~-~~g~i~Vd~~l~~~~~~~VfaiG  154 (283)
                      +++.      +.  +.+  .++ +  ++++|.|++|+|.+|+. +  ++.++++++ ++|+|.||+++|+ +.|+|||+|
T Consensus       275 ~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~T-s~~~IyA~G  353 (519)
T 3qfa_A          275 KVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT-NVPYIYAIG  353 (519)
T ss_dssp             EEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBC-SSTTEEECG
T ss_pred             EEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCcc-CCCCEEEEE
Confidence            6642      22  322  355 2  57899999999999984 3  567788887 5799999999998 999999999


Q ss_pred             cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      ||+.        ..|+.++.|..||+++|+||..
T Consensus       354 D~~~--------g~~~~~~~A~~~g~~aa~~i~g  379 (519)
T 3qfa_A          354 DILE--------DKVELTPVAIQAGRLLAQRLYA  379 (519)
T ss_dssp             GGBS--------SSCCCHHHHHHHHHHHHHHHHS
T ss_pred             eccC--------CCCccHHHHHHHHHHHHHHHcC
Confidence            9984        2378899999999999999863

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.89  E-value=2.3e-22  Score=176.56  Aligned_cols=155  Identities=26%  Similarity=0.395  Sum_probs=131.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      .+.++|+|||+|++|+|+|..|.+.+              .+|+++++. .+++  .+.   ...+.+++.||+++.+ +
T Consensus       152 ~~~~~v~vvG~G~~~~e~a~~l~~~g--------------~~v~~~~~~~~~~~--~~~---~~~~~~~~~gv~~~~~~~  212 (323)
T 3f8d_A          152 FKNRVVAVIGGGDSALEGAEILSSYS--------------TKVYLIHRRDTFKA--QPI---YVETVKKKPNVEFVLNSV  212 (323)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHHHHS--------------SEEEEECSSSSCCS--CHH---HHHHHHTCTTEEEECSEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhC--------------CeEEEEEeCCCCCc--CHH---HHHHHHhCCCcEEEeCCE
Confidence            45689999999999999999999876              899999997 5555  232   2334444569999999 7


Q ss_pred             eEEEeCC----eEEEcC---Cc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           90 VKDVDSQ----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        90 V~~v~~~----~v~~~~---g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      |++++.+    .|++.+   |+  ++++|.||+++|.+|+ ++++.++++++++|++.||+++++ +.|+||++|||+..
T Consensus       213 v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~  291 (323)
T 3f8d_A          213 VKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRT-SVPGVFAAGDCTSA  291 (323)
T ss_dssp             EEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBC-SSTTEEECSTTBST
T ss_pred             EEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCcee-cCCCEEEcceecCC
Confidence            9999765    477765   76  7999999999999999 788889999999999999999998 89999999999964


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhh
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNRIGKA  192 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~  192 (283)
                      +      +.|+++..|..||+.+|.||.+.+..
T Consensus       292 ~------~~~~~~~~A~~~g~~aa~~i~~~l~~  318 (323)
T 3f8d_A          292 W------LGFRQVITAVAQGAVAATSAYRYVTE  318 (323)
T ss_dssp             T------TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C------CcccceeehhhHHHHHHHHHHHHHHH
Confidence            2      24889999999999999999998873

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.89  E-value=6.9e-22  Score=188.82  Aligned_cols=153  Identities=21%  Similarity=0.370  Sum_probs=131.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      ..++|+|||||++|+|+|..|++++              .+|+++++..+++.+++++.+.+.+.|++.||+++++ .++
T Consensus       285 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~  350 (598)
T 2x8g_A          285 FPGKTLVIGASYVALECAGFLASLG--------------GDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPD  350 (598)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEE
Confidence            4578999999999999999999987              8999999888888999999999999999999999998 677


Q ss_pred             EEe--------C---CeEE----EcCCcEEE--eeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEE
Q 023375           92 DVD--------S---QKLI----LNDGTEVP--YGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVF  151 (283)
Q Consensus        92 ~v~--------~---~~v~----~~~g~~i~--~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~Vf  151 (283)
                      +++        .   +.+.    +.+|++++  +|.||+|+|.+|+. +  ++.++++++++|+|.||+++|+ +.|+||
T Consensus       351 ~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-s~~~Vy  429 (598)
T 2x8g_A          351 EIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQT-TVSNVY  429 (598)
T ss_dssp             EEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSBC-SSTTEE
T ss_pred             EEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCcC-CCCCEE
Confidence            763        2   3332    35777665  99999999999994 4  4677888888899999999998 899999


Q ss_pred             EeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          152 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       152 aiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      |+|||+.        ..+..++.|.+||+.+|+||..
T Consensus       430 A~GD~~~--------~~~~~~~~A~~~g~~aa~~i~~  458 (598)
T 2x8g_A          430 AIGDINA--------GKPQLTPVAIQAGRYLARRLFA  458 (598)
T ss_dssp             ECGGGBT--------TSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeecC--------CCCccHHHHHHhHHHHHHHHhc
Confidence            9999974        1367899999999999999874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.89  E-value=3.5e-22  Score=175.99  Aligned_cols=152  Identities=20%  Similarity=0.221  Sum_probs=127.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ...++|+|||||++|+|+|..|++.+              .+|+++++...+. ..+.    +.+.+.+.||+++++ +|
T Consensus       153 ~~~~~v~viG~G~~g~e~a~~l~~~g--------------~~V~~i~~~~~~~-~~~~----l~~~l~~~gv~i~~~~~v  213 (319)
T 3cty_A          153 FKGKRVVTIGGGNSGAIAAISMSEYV--------------KNVTIIEYMPKYM-CENA----YVQEIKKRNIPYIMNAQV  213 (319)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHTTTB--------------SEEEEECSSSSCC-SCHH----HHHHHHHTTCCEECSEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhhC--------------CcEEEEEcCCccC-CCHH----HHHHHhcCCcEEEcCCeE
Confidence            34589999999999999999999876              8999999873332 2333    445566899999999 89


Q ss_pred             EEEeCC-----eEEEc---CCc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           91 KDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~~~-----~v~~~---~g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      +++..+     .|++.   +|+  ++++|.||+|+|.+|+ +++..++++.+++|++.||+++++ +.|+|||+|||+..
T Consensus       214 ~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~  292 (319)
T 3cty_A          214 TEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRT-SVPGVYAAGDVTSG  292 (319)
T ss_dssp             EEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBC-SSTTEEECSTTBTT
T ss_pred             EEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCcc-CCCCEEEeecccCc
Confidence            998754     36665   565  6899999999999999 677888888888899999999998 89999999999952


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                              .++++..|+.||+.+|.||.+.+.
T Consensus       293 --------~~~~~~~A~~~g~~aa~~i~~~l~  316 (319)
T 3cty_A          293 --------NFAQIASAVGDGCKAALSLYSDSI  316 (319)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------chhhHHHHHHHHHHHHHHHHHHhh
Confidence                    257899999999999999998875

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.89  E-value=4.1e-22  Score=175.30  Aligned_cols=153  Identities=22%  Similarity=0.247  Sum_probs=129.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ...++|+|||+|++|+|+|..|++.+              .+|+++++. .+.  .++.+.+.+.+.+++.||+++++ +
T Consensus       143 ~~~~~v~ViG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~~  206 (320)
T 1trb_A          143 YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRT  206 (320)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCce
Confidence            35689999999999999999999876              899999987 443  36778888889999999999999 8


Q ss_pred             eEEEeCCe-----EEEcC----C--cEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCc-----ccCCCCCEEE
Q 023375           90 VKDVDSQK-----LILND----G--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWL-----RVPSVQDVFA  152 (283)
Q Consensus        90 V~~v~~~~-----v~~~~----g--~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l-----~~~~~~~Vfa  152 (283)
                      |++++.+.     |++++    |  +++++|.||+|+|.+|+. ++. .+++.+ +|++.||+++     ++ +.|+||+
T Consensus       207 v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~-~G~i~vd~~~~~~~~~t-~~~~vya  283 (320)
T 1trb_A          207 LEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELE-NGYIKVQSGIHGNATQT-SIPGVFA  283 (320)
T ss_dssp             EEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEE-TTEECCCCSSSSCTTBC-SSTTEEE
T ss_pred             eEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-cccccc-CceEEECCCcccccccC-CCCCEEE
Confidence            99997553     77764    4  579999999999999984 444 567777 8999999987     55 8999999


Q ss_pred             eccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          153 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       153 iGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +|||+..        .++++..|+.||+.+|.||...+.
T Consensus       284 ~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~  314 (320)
T 1trb_A          284 AGDVMDH--------IYRQAITSAGTGCMAALDAERYLD  314 (320)
T ss_dssp             CGGGGCS--------SSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCC--------cchhhhhhhccHHHHHHHHHHHHH
Confidence            9999963        267899999999999999999886

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.89  E-value=4.3e-22  Score=174.59  Aligned_cols=151  Identities=19%  Similarity=0.221  Sum_probs=125.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHH-hCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS-KSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~-~~gV~v~~~-~V   90 (283)
                      ..++|+|||+|++|+|+|..|++.+              .+|+++++...++ .++.    +.+.+. +.||+++++ +|
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~----~~~~l~~~~gv~v~~~~~v  202 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANIC--------------KKVYLIHRRDGFR-CAPI----TLEHAKNNDKIEFLTPYVV  202 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTS--------------SEEEEECSSSSCC-SCHH----HHHHHHTCTTEEEETTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEeeCCccC-CCHH----HHHHHhhCCCeEEEeCCEE
Confidence            4689999999999999999999876              8999999873332 3343    334444 579999999 89


Q ss_pred             EEEeCC-----eEEEc---CCc--EEEeeEEEEcCCCCCc-hhhhccC----CCCCCCCccccCCCcccCCCCCEEEecc
Q 023375           91 KDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLD----LPKSPGGRIGIDEWLRVPSVQDVFAVGD  155 (283)
Q Consensus        91 ~~v~~~-----~v~~~---~g~--~i~~d~vi~a~G~~~~-~~~~~~~----l~~~~~g~i~Vd~~l~~~~~~~VfaiGD  155 (283)
                      ++++.+     .|+++   +|+  ++++|.||+|+|.+|+ +++..++    ++++++|++.||+++|+ +.|+|||+||
T Consensus       203 ~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t-~~~~vya~GD  281 (311)
T 2q0l_A          203 EEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT-NVQGLFAAGD  281 (311)
T ss_dssp             EEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECST
T ss_pred             EEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCcccc-CCCCeEEccc
Confidence            998754     46765   675  7899999999999998 6777664    77888899999999998 8999999999


Q ss_pred             ccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          156 CSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       156 ~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      |+..        .|+++..|..||+.+|.||.+.+.
T Consensus       282 ~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~  309 (311)
T 2q0l_A          282 IRIF--------APKQVVCAASDGATAALSVISYLE  309 (311)
T ss_dssp             TBTT--------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCc--------chHHHHHHHHhHHHHHHHHHHHHh
Confidence            9963        278899999999999999998775

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.88  E-value=6.9e-22  Score=174.55  Aligned_cols=152  Identities=20%  Similarity=0.282  Sum_probs=124.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ...++|+|||+|++|+|+|..|++.+              .+|+++++...+. ..+.+   .++.+++.||+++++ +|
T Consensus       150 ~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~~---~~~l~~~~gv~i~~~~~v  211 (325)
T 2q7v_A          150 YKGKKVVVIGGGDAAVEEGMFLTKFA--------------DEVTVIHRRDTLR-ANKVA---QARAFANPKMKFIWDTAV  211 (325)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTC--------------SEEEEECSSSSCC-SCHHH---HHHHHTCTTEEEECSEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEeCCCcCC-cchHH---HHHHHhcCCceEecCCce
Confidence            34589999999999999999998876              8999999873222 23332   223334579999999 89


Q ss_pred             EEEeCC----eEEEc---CCc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQ----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~----~v~~~---~g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      +++..+    .|+++   +|+  ++++|.||+|+|.+|+ ++++.+ ++.+++|++.||+++++ +.|+||++|||+.. 
T Consensus       212 ~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~-  288 (325)
T 2q7v_A          212 EEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYT-NIPMLFAAGDVSDY-  288 (325)
T ss_dssp             EEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBC-SSTTEEECSTTTCS-
T ss_pred             EEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCcc-CCCCEEEeecccCc-
Confidence            999765    56775   665  7899999999999998 577766 77788899999999998 89999999999963 


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                             .|+++..|..||+.+|.||...+.
T Consensus       289 -------~~~~~~~A~~~g~~aa~~i~~~l~  312 (325)
T 2q7v_A          289 -------IYRQLATSVGAGTRAAMMTERQLA  312 (325)
T ss_dssp             -------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   267899999999999999999886

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.88  E-value=4e-22  Score=178.56  Aligned_cols=155  Identities=19%  Similarity=0.235  Sum_probs=132.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++|+|||+|++|+|+|..|++.+              .+|+++++. .+++.  +...+.+.+.+++.||+++.+ +|
T Consensus       162 ~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~~~--~~~~~~l~~~~~~~gv~i~~~~~v  225 (360)
T 3ab1_A          162 KGKRVVIVGGGDSALDWTVGLIKNA--------------ASVTLVHRGHEFQGH--GKTAHEVERARANGTIDVYLETEV  225 (360)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTS--------------SEEEEECSSSSCSSC--SHHHHSSHHHHHHTSEEEESSEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCCCCCC--HHHHHHHHHHhhcCceEEEcCcCH
Confidence            4689999999999999999998876              899999997 44442  356677788888999999999 89


Q ss_pred             EEEeCC-----eEEEc--CC--cEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQ-----KLILN--DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~-----~v~~~--~g--~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      ++++.+     .|++.  +|  +++++|.||+|+|.+|+ ++++.++++.+ +|++.||+++|+ +.|+|||+|||+..+
T Consensus       226 ~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~  303 (360)
T 3ab1_A          226 ASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDSHMKT-SVDGLYAAGDIAYYP  303 (360)
T ss_dssp             EEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEEECCTTSBC-SSTTEEECSTTEECT
T ss_pred             HHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCeeeecCCCcC-CCCCEEEecCccCCC
Confidence            998754     56664  77  57999999999999998 58888888876 689999999998 899999999999753


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .      .++++..|..||+++|+||...+.
T Consensus       304 ~------~~~~~~~A~~~g~~aa~~i~~~l~  328 (360)
T 3ab1_A          304 G------KLKIIQTGLSEATMAVRHSLSYIK  328 (360)
T ss_dssp             T------CCCSHHHHHHHHHHHHHHHHHHHS
T ss_pred             C------ccceeehhHHHHHHHHHHHHhhcC
Confidence            1      378899999999999999998875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.88  E-value=3.6e-22  Score=173.41  Aligned_cols=149  Identities=17%  Similarity=0.222  Sum_probs=128.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceE
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVK   91 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~   91 (283)
                      .+.++|+|||+|++|+|+|.+|++.               .+|+++++...  .+.    ..+.+.|++.||+++..+|+
T Consensus       139 ~~~~~v~vvG~G~~~~e~a~~l~~~---------------g~v~~v~~~~~--~~~----~~~~~~l~~~gv~i~~~~v~  197 (297)
T 3fbs_A          139 LDQGKIGVIAASPMAIHHALMLPDW---------------GETTFFTNGIV--EPD----ADQHALLAARGVRVETTRIR  197 (297)
T ss_dssp             GTTCEEEEECCSTTHHHHHHHGGGT---------------SEEEEECTTTC--CCC----HHHHHHHHHTTCEEECSCEE
T ss_pred             hcCCEEEEEecCccHHHHHHHhhhc---------------CcEEEEECCCC--CCC----HHHHHHHHHCCcEEEcceee
Confidence            4578999999999999999999764               38999988732  233    34567888999999965899


Q ss_pred             EEeCC-eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCC--CCC-ccccCCCcccCCCCCEEEeccccccCcCCCCc
Q 023375           92 DVDSQ-KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS--PGG-RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT  166 (283)
Q Consensus        92 ~v~~~-~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~--~~g-~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~  166 (283)
                      +++.+ .|++++|+++++|.||+++|.+|+ ++++.++++.+  ++| ++.||+++++ +.|+|||+|||+..       
T Consensus       198 ~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~~~~-------  269 (297)
T 3fbs_A          198 EIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVARP-------  269 (297)
T ss_dssp             EEETTEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGGGCT-------
T ss_pred             eeecCCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeecCCc-------
Confidence            99887 899999999999999999999998 67788888776  457 8999999998 89999999999952       


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          167 VLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       167 ~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                        |+++..|+.||+.+|.||.+.+.
T Consensus       270 --~~~~~~A~~~g~~aa~~i~~~l~  292 (297)
T 3fbs_A          270 --AGSVALAVGDGAMAGAAAHRSIL  292 (297)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHhHHHHHHHHHHHHh
Confidence              88999999999999999999886

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.88  E-value=1.7e-21  Score=170.62  Aligned_cols=151  Identities=23%  Similarity=0.301  Sum_probs=124.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh-CCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK-SGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~~~-~   89 (283)
                      ...++|+|||+|++|+|+|.+|++.+              .+|+++++...+. +++    .+.+.|++ .||+++++ +
T Consensus       142 ~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~----~~~~~l~~~~gv~v~~~~~  202 (310)
T 1fl2_A          142 FKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMK-ADQ----VLQDKLRSLKNVDIILNAQ  202 (310)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTB--------------SEEEEECSSSSCC-SCH----HHHHHHHTCTTEEEESSEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhC--------------CEEEEEEeCcccC-ccH----HHHHHHhhCCCeEEecCCc
Confidence            35689999999999999999999876              8999999873332 333    34556666 69999999 8


Q ss_pred             eEEEeCC-----eEEEcC---Cc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           90 VKDVDSQ-----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        90 V~~v~~~-----~v~~~~---g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      |+++..+     .|++.+   |+  ++++|.||+|+|.+|+ +++.+. ++++++|++.||+++|+ +.|+|||+|||+.
T Consensus       203 v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~  280 (310)
T 1fl2_A          203 TTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCET-NVKGVFAAGDCTT  280 (310)
T ss_dssp             EEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBC-SSTTEEECSTTBS
T ss_pred             eEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCcc-CCCCEEEeecccC
Confidence            9999754     466653   53  6899999999999998 566653 77778899999999997 8999999999996


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .        .++++..|+.||+.+|.||...+.
T Consensus       281 ~--------~~~~~~~A~~~g~~aa~~i~~~l~  305 (310)
T 1fl2_A          281 V--------PYKQIIIATGEGAKASLSAFDYLI  305 (310)
T ss_dssp             C--------SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--------cchhhhhhHhhHHHHHHHHHHHHH
Confidence            3        246788999999999999999886

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.88  E-value=1.2e-21  Score=171.46  Aligned_cols=153  Identities=19%  Similarity=0.223  Sum_probs=126.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ...++++|||+|++|+|+|..|.+.+              .+|+++++...++ ..+.   ...+.+++.||+++++ +|
T Consensus       145 ~~~~~v~viG~g~~~~e~a~~l~~~g--------------~~v~~~~~~~~~~-~~~~---~~~~~~~~~gv~~~~~~~v  206 (315)
T 3r9u_A          145 YKNKEVAVLGGGDTALEEALYLANIC--------------SKIYLIHRRDEFR-AAPS---TVEKVKKNEKIELITSASV  206 (315)
T ss_dssp             GTTSEEEEECCBHHHHHHHHHHHTTS--------------SEEEEECSSSSCB-SCHH---HHHHHHHCTTEEEECSCEE
T ss_pred             cCcCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEeCCCCC-CCHH---HHHHHHhcCCeEEEeCcEE
Confidence            45689999999999999999999876              8999999874332 2333   3345567899999999 89


Q ss_pred             EEEeCCe-----EEEc--CCc--EEEeeEEEEcCCCCCch-hhhc---cC-CCCCCCCccccCCCcccCCCCCEEEeccc
Q 023375           91 KDVDSQK-----LILN--DGT--EVPYGLLVWSTGVGPST-LVKS---LD-LPKSPGGRIGIDEWLRVPSVQDVFAVGDC  156 (283)
Q Consensus        91 ~~v~~~~-----v~~~--~g~--~i~~d~vi~a~G~~~~~-~~~~---~~-l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~  156 (283)
                      ++++.+.     |++.  +|+  ++++|.||+++|.+|+. ++..   ++ ++.+++|++.||+++|+ +.|+|||+|||
T Consensus       207 ~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t-~~~~v~a~GD~  285 (315)
T 3r9u_A          207 DEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT-SVAGLFAAGDL  285 (315)
T ss_dssp             EEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECGGG
T ss_pred             EEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCccc-CCCCEEEeecc
Confidence            9986543     6666  775  79999999999999995 4443   44 88888899999999999 99999999999


Q ss_pred             cccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +..        .|+++..|+.||+.+|.||.+.+.
T Consensus       286 ~~~--------~~~~~~~A~~~g~~aa~~i~~~l~  312 (315)
T 3r9u_A          286 RKD--------APKQVICAAGDGAVAALSAMAYIE  312 (315)
T ss_dssp             BTT--------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCC--------chhhhhhHHhhHHHHHHHHHHHHH
Confidence            852        388999999999999999999886

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.87  E-value=9.8e-22  Score=173.34  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=129.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .+.++++|||+|++|+|+|..|++.+              .+|+++++...+...++.     .+.|++.||+++.+ +|
T Consensus       152 ~~~~~v~vvG~g~~~~e~a~~l~~~~--------------~~v~~~~~~~~~~~~~~~-----~~~l~~~gv~~~~~~~v  212 (332)
T 3lzw_A          152 FAGRRVAILGGGDSAVDWALMLEPIA--------------KEVSIIHRRDKFRAHEHS-----VENLHASKVNVLTPFVP  212 (332)
T ss_dssp             GBTCEEEEECSSHHHHHHHHHHTTTB--------------SEEEEECSSSSCSSCHHH-----HHHHHHSSCEEETTEEE
T ss_pred             cCCCEEEEECCCHhHHHHHHHHHhhC--------------CeEEEEEecCcCCccHHH-----HHHHhcCCeEEEeCcee
Confidence            35689999999999999999998876              899999998433333322     34478899999999 89


Q ss_pred             EEEeCCe----EEEcC-----CcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           91 KDVDSQK----LILND-----GTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        91 ~~v~~~~----v~~~~-----g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      ++++.+.    |++++     ++++++|.||+|+|.+|+ ++++.++++. ++|++.||+++++ +.|+|||+|||+.++
T Consensus       213 ~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~  290 (332)
T 3lzw_A          213 AELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKSTMET-NIEGFFAAGDICTYE  290 (332)
T ss_dssp             EEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCTTSBC-SSTTEEECGGGEECT
T ss_pred             eEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCCCCce-ecCCEEEccceecCC
Confidence            9998753    77765     467999999999999997 6788888887 6799999999998 899999999999752


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                            ..|+++..|..||+.+|+||...+.
T Consensus       291 ------~~~~~~~~A~~~g~~aa~~i~~~l~  315 (332)
T 3lzw_A          291 ------GKVNLIASGFGEAPTAVNNAKAYMD  315 (332)
T ss_dssp             ------TCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------CCcceEeeehhhHHHHHHHHHHhhC
Confidence                  2388999999999999999999886

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.87  E-value=1e-21  Score=173.71  Aligned_cols=151  Identities=17%  Similarity=0.201  Sum_probs=125.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhC-CCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS-GVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~-gV~v~~~-   88 (283)
                      ...++++|||+|++|+|+|..|++.+              .+|+++++. .+++      ...+.+.+.+. ||+++++ 
T Consensus       171 ~~~~~v~vvG~G~~g~e~a~~l~~~g--------------~~v~~v~~~~~~~~------~~~~~~~l~~~~gv~i~~~~  230 (338)
T 3itj_A          171 FRNKPLAVIGGGDSACEEAQFLTKYG--------------SKVFMLVRKDHLRA------STIMQKRAEKNEKIEILYNT  230 (338)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS------CHHHHHHHHHCTTEEEECSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCccCC------CHHHHHHHHhcCCeEEeecc
Confidence            35689999999999999999999876              899999997 5544      23445556555 9999999 


Q ss_pred             ceEEEeCCe-----EEEcC-----CcEEEeeEEEEcCCCCCchhhhccCCCCCCCCcccc-CCCcccCCCCCEEEecccc
Q 023375           89 IVKDVDSQK-----LILND-----GTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGI-DEWLRVPSVQDVFAVGDCS  157 (283)
Q Consensus        89 ~V~~v~~~~-----v~~~~-----g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~V-d~~l~~~~~~~VfaiGD~a  157 (283)
                      +|++++.+.     |++++     ++++++|.||+|+|.+|+..+...+++++++|++.| |+++++ +.|+|||+|||+
T Consensus       231 ~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t-~~~~vya~GD~~  309 (338)
T 3itj_A          231 VALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLT-SVPGFFAAGDVQ  309 (338)
T ss_dssp             EEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBC-SSTTEEECGGGG
T ss_pred             eeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCccccc-CCCCEEEeeccC
Confidence            899997653     77765     467999999999999999544344888888999985 788887 899999999999


Q ss_pred             ccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          158 GYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       158 ~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .        ..|+++..|+.||+.+|.||.+.+.
T Consensus       310 ~--------~~~~~~~~A~~~g~~aa~~i~~~l~  335 (338)
T 3itj_A          310 D--------SKYRQAITSAGSGCMAALDAEKYLT  335 (338)
T ss_dssp             C--------SSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             C--------CCccceeeehhhhHHHHHHHHHHHh
Confidence            5        2378899999999999999999886

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.86  E-value=5.3e-21  Score=169.20  Aligned_cols=153  Identities=19%  Similarity=0.198  Sum_probs=122.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ...++|+|||+|++|+|+|..|++.+              .+|+++++...+. ..+.+   ..+.+++.||+++++ +|
T Consensus       157 ~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~-~~~~~---~~~~~~~~gv~i~~~~~v  218 (333)
T 1vdc_A          157 FRNKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDAFR-ASKIM---QQRALSNPKIDVIWNSSV  218 (333)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTS--------------SEEEEECSSSSCC-SCHHH---HHHHHTCTTEEEECSEEE
T ss_pred             cCCCeEEEECCChHHHHHHHHHHhcC--------------CeEEEEecCCcCC-ccHHH---HHHHHhCCCeeEecCCce
Confidence            45689999999999999999998876              8999999873322 12222   224467889999999 89


Q ss_pred             EEEeCCe-------EEEc---CC--cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCc-ccCCCCCEEEecccc
Q 023375           91 KDVDSQK-------LILN---DG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWL-RVPSVQDVFAVGDCS  157 (283)
Q Consensus        91 ~~v~~~~-------v~~~---~g--~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l-~~~~~~~VfaiGD~a  157 (283)
                      ++++.+.       |.+.   +|  +++++|.||+|+|.+|+..+.+.+++.+++|++.||+++ ++ +.|+|||+|||+
T Consensus       219 ~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t-~~~~vya~GD~~  297 (333)
T 1vdc_A          219 VEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQT-SVPGVFAAGDVQ  297 (333)
T ss_dssp             EEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBC-SSTTEEECGGGG
T ss_pred             EEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhhccc-CCCCEEEeeecc
Confidence            9987542       7775   45  579999999999999995333357777888999999874 65 899999999999


Q ss_pred             ccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          158 GYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       158 ~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ..        .++++..|+.||+.+|.||.+.+.
T Consensus       298 ~~--------~~~~~~~A~~~g~~aa~~i~~~l~  323 (333)
T 1vdc_A          298 DK--------KYRQAITAAGTGCMAALDAEHYLQ  323 (333)
T ss_dssp             CS--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--------CchhHHHHHHhHHHHHHHHHHHHH
Confidence            63        257899999999999999999886

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.86  E-value=4.3e-21  Score=170.28  Aligned_cols=150  Identities=24%  Similarity=0.283  Sum_probs=122.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++|+|||+|++|+|+|..|++.+              .+|+++++. .+..  .+.+   ..+.+++.||+++++ +|
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g--------------~~V~l~~~~~~~~~--~~~~---~~~~~~~~gV~v~~~~~v  214 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFA--------------RSVTLVHRRDEFRA--SKIM---LDRARNNDKIRFLTNHTV  214 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTC--------------SEEEEECSSSSCSS--CTTH---HHHHHHCTTEEEECSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhC--------------CeEEEEEcCCcCCc--cHHH---HHHHhccCCcEEEeCcee
Confidence            5689999999999999999998876              899999987 4432  1222   124456789999999 89


Q ss_pred             EEEeCCe----EEEc---CC--cEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCc-ccCCCCCEEEecccccc
Q 023375           91 KDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWL-RVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~~~~----v~~~---~g--~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l-~~~~~~~VfaiGD~a~~  159 (283)
                      ++++.+.    |.++   +|  +++++|.||||+|.+|+. ++. .+++.+++|++.||+++ ++ +.|+|||+|||+..
T Consensus       215 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t-~~~~iya~GD~~~~  292 (335)
T 2a87_A          215 VAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTST-SLPGVFAAGDLVDR  292 (335)
T ss_dssp             EEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBC-SSTTEEECGGGTCC
T ss_pred             EEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCcc-CCCCEEEeeecCCc
Confidence            9998764    7775   45  579999999999999994 443 56777888999999864 55 89999999999952


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                              .++++..|..||+.+|.||.+.+.
T Consensus       293 --------~~~~~~~A~~~g~~aA~~i~~~l~  316 (335)
T 2a87_A          293 --------TYRQAVTAAGSGCAAAIDAERWLA  316 (335)
T ss_dssp             --------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cHHHHHHHHHhHHHHHHHHHHHhh
Confidence                    267899999999999999998886

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.85  E-value=9.7e-21  Score=169.70  Aligned_cols=159  Identities=13%  Similarity=0.151  Sum_probs=126.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-------CCCHHHHHHHHHHHHhCC-C
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-------SFDDRLRHYATTQLSKSG-V   83 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-------~~~~~~~~~~~~~l~~~g-V   83 (283)
                      ..++|+|||||++|+|+|.+|++.+              .+|+++++. .+++       .+++.+.+.+.+.|++.| |
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g--------------~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v  230 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNG--------------SDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI  230 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcC--------------CeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcE
Confidence            4579999999999999999999887              899999987 5553       266788899999999997 9


Q ss_pred             EEEeC-ceEEE--eCC--eEEEcCCcEEE-eeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccc
Q 023375           84 RLVRG-IVKDV--DSQ--KLILNDGTEVP-YGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC  156 (283)
Q Consensus        84 ~v~~~-~V~~v--~~~--~v~~~~g~~i~-~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~  156 (283)
                      +++++ +|+++  +++  .|++.+|+++. +|.+|||+|.+|+. ++.+.+++ +++|++.||++++.+++|+||++|||
T Consensus       231 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~GD~  309 (369)
T 3d1c_A          231 EMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFV-TTNQDIKLTTHDESTRYPNIFMIGAT  309 (369)
T ss_dssp             EEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSC-CTTSCCCBCTTSBBSSSTTEEECSTT
T ss_pred             EEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhcc-CCCCCEEechhhcccCCCCeEEeccc
Confidence            99999 89999  445  46778888775 59999999999995 66655566 67899999987655599999999999


Q ss_pred             cccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +..+..     .......|.+||+++|++|...+.
T Consensus       310 ~~~~~~-----~~~~~~~~~~~a~~~a~~l~~~~~  339 (369)
T 3d1c_A          310 VENDNA-----KLCYIYKFRARFAVLAHLLTQREG  339 (369)
T ss_dssp             CCCSSC-----CCCSHHHHGGGHHHHHHHHHHHTT
T ss_pred             cccCCe-----eEEEEehhhHHHHHHHHHHhcccC
Confidence            975431     122345678899999999987664

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.85  E-value=8.3e-21  Score=175.54  Aligned_cols=152  Identities=18%  Similarity=0.219  Sum_probs=123.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-CCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-LSSFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-l~~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ...++|+|||||.+|+|+|..+.+.+.             .+|+++++. .. +|..+.+     .+.+++.||+++++ 
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga-------------~~Vtiv~r~~~~~~p~~~~e-----~~~~~~~Gv~~~~~~  323 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGA-------------TSVKCLYRRDRKNMPGSQRE-----VAHAEEEGVEFIWQA  323 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTC-------------SEEEEECSSCSTTCSSCHHH-----HHHHHHTTCEEECCS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCC-------------CEEEEEEeCCccCCCCCHHH-----HHHHHHCCCEEEeCC
Confidence            356899999999999999999988761             379999987 44 6665543     34577889999988 


Q ss_pred             ceEEEeCCe----EEEc------------------CC--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCC
Q 023375           89 IVKDVDSQK----LILN------------------DG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEW  141 (283)
Q Consensus        89 ~V~~v~~~~----v~~~------------------~g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~  141 (283)
                      .++++.+++    |++.                  +|  +++++|+||+|+|..|++   +++.++++++++|++.||++
T Consensus       324 ~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~  403 (456)
T 2vdc_G          324 APEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHR  403 (456)
T ss_dssp             SSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTT
T ss_pred             CceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCC
Confidence            677765432    2221                  23  478999999999999974   67888999999999999987


Q ss_pred             -cccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          142 -LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       142 -l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                       +++ +.|+|||+|||+..         |.++..|+.||+.+|++|...+.
T Consensus       404 ~~~T-s~~~VfA~GD~~~g---------~~~v~~A~~~G~~aA~~i~~~L~  444 (456)
T 2vdc_G          404 TKMT-NMDGVFAAGDIVRG---------ASLVVWAIRDGRDAAEGIHAYAK  444 (456)
T ss_dssp             TCBC-SSTTEEECGGGGSS---------CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcC-CCCCEEEeccccCC---------chHHHHHHHHHHHHHHHHHHHhh
Confidence             997 89999999999852         67899999999999999999886

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=8.5e-21  Score=168.66  Aligned_cols=156  Identities=22%  Similarity=0.320  Sum_probs=120.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCC--CHHHHHHHHHHHH--------
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSF--DDRLRHYATTQLS--------   79 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~--~~~~~~~~~~~l~--------   79 (283)
                      ...++|+|||||++|+|+|.+|++.+               +|+++++.  .++|..  +..+...+.+.+.        
T Consensus       161 ~~~~~v~VvG~G~~g~e~a~~l~~~~---------------~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (357)
T 4a9w_A          161 FAGMRVAIIGGGNSGAQILAEVSTVA---------------ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREP  225 (357)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTS---------------EEEEECSSCCCBCCTTCCTHHHHTC--------------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHhhC---------------CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCC
Confidence            35689999999999999999998763               59999875  445532  3444433333332        


Q ss_pred             --------------------hCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccc
Q 023375           80 --------------------KSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIG  137 (283)
Q Consensus        80 --------------------~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~  137 (283)
                                          +.|+ +... .+++++.+.+.+++|+++++|.||||+|.+|+ ++++.++++ +++|++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~-~~~G~i~  303 (357)
T 4a9w_A          226 DLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLV-TPQGQVE  303 (357)
T ss_dssp             --------CBCCCHHHHHHHHTTC-CCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTTTTCB-CTTSCBC
T ss_pred             CcccccccCcccChhHHHHHhcCc-eEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCccccc-CCCCCcc
Confidence                                4455 4444 68889999999999999999999999999999 888888998 7889999


Q ss_pred             cCCC--cccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          138 IDEW--LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       138 Vd~~--l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ||++  +++ +.|+|||+|||...      .+.++++..|.+||+.+|+||.+.++
T Consensus       304 vd~~~l~~t-~~~~vya~Gd~d~~------~~~~~~~~~A~~~g~~~a~~i~~~l~  352 (357)
T 4a9w_A          304 VDGSGLRAL-AVPSVWLLGYGDWN------GMASATLIGVTRYAREAVRQVTAYCA  352 (357)
T ss_dssp             BCTTSCBBS-SCTTEEECSSCGGG------STTCSSTTTHHHHHHHHHHHHHHHTC
T ss_pred             ccCCcccCC-CCCCeEEecccccc------ccchhhhhhhHHHHHHHHHHHHHHHH
Confidence            9998  666 99999999954221      12367778899999999999999886

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.84  E-value=1.6e-20  Score=164.87  Aligned_cols=151  Identities=18%  Similarity=0.194  Sum_probs=117.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      .+.++|+|||||++|+|+|..|++++              .+|+++++. ++++..     ....+.+++.++..... .
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  203 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFA--------------DKVTIVHRRDELRAQR-----ILQDRAFKNDKIDFIWSHT  203 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTC--------------SEEEEECSSSSCCSCH-----HHHHHHHHCTTEEEECSEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEecccccCcch-----hHHHHHHHhcCcceeeecc
Confidence            35689999999999999999999887              899999997 666532     12345567778887766 4


Q ss_pred             eEEEe--CC---e--EEE---cCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           90 VKDVD--SQ---K--LIL---NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        90 V~~v~--~~---~--v~~---~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      +..+.  ..   .  ...   .++..+++|.|++++|..|+ .+...+++. +++|+|.||+++|| +.|+|||+|||+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~-~~~G~I~vd~~~~T-s~pgIyA~GDv~~  281 (312)
T 4gcm_A          204 LKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGIT-NDVGYIVTKDDMTT-SVPGIFAAGDVRD  281 (312)
T ss_dssp             EEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCB-CTTSCBCCCTTSBC-SSTTEEECSTTBS
T ss_pred             eeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhccee-cCCCeEeeCCCCcc-CCCCEEEEeecCC
Confidence            33332  11   1  111   23457899999999999998 466666764 56799999999999 9999999999985


Q ss_pred             cCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          159 YLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .        .++++..|+.||+.||.||.+++.
T Consensus       282 ~--------~~~~~~~A~~~G~~AA~~i~~~L~  306 (312)
T 4gcm_A          282 K--------GLRQIVTATGDGSIAAQSAAEYIE  306 (312)
T ss_dssp             C--------SCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--------cchHHHHHHHHHHHHHHHHHHHHH
Confidence            2        267889999999999999998875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.83  E-value=7.2e-20  Score=172.11  Aligned_cols=150  Identities=25%  Similarity=0.325  Sum_probs=124.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHh-CCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK-SGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~-~gV~v~~~-   88 (283)
                      ...++|+|||||++|+|+|..|+..+              .+|+++++. .+++  +    ..+.+.|++ .||+++++ 
T Consensus       353 ~~~k~V~ViGgG~~g~E~A~~L~~~g--------------~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV~v~~~~  412 (521)
T 1hyu_A          353 FKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMKA--D----QVLQDKVRSLKNVDIILNA  412 (521)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHHHHB--------------SEEEEECSSSSCCS--C----HHHHHHHTTCTTEEEECSE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEeCcccCc--C----HHHHHHHhcCCCcEEEeCC
Confidence            45689999999999999999999887              899999987 4443  2    345666777 69999999 


Q ss_pred             ceEEEeCC-----eEEEcC---Cc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccc
Q 023375           89 IVKDVDSQ-----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS  157 (283)
Q Consensus        89 ~V~~v~~~-----~v~~~~---g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a  157 (283)
                      +++++..+     ++.+.+   |+  ++++|.|++++|.+|+ +++.. .++++++|++.||+++++ +.|+|||+|||+
T Consensus       413 ~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~t-s~p~VfA~GD~~  490 (521)
T 1hyu_A          413 QTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCET-SVKGVFAAGDCT  490 (521)
T ss_dssp             EEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBC-SSTTEEECSTTB
T ss_pred             EEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCC-CCCCEEEeeccc
Confidence            89999754     356653   53  6899999999999998 46665 477788899999999998 999999999999


Q ss_pred             ccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          158 GYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       158 ~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ..        .++++..|+.||+.+|.+|...+.
T Consensus       491 ~~--------~~~~~~~A~~~g~~aa~~i~~~L~  516 (521)
T 1hyu_A          491 TV--------PYKQIIIATGEGAKASLSAFDYLI  516 (521)
T ss_dssp             CC--------SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--------CcceeeehHHhHHHHHHHHHHHHH
Confidence            63        246889999999999999998875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.83  E-value=4.5e-20  Score=161.75  Aligned_cols=151  Identities=19%  Similarity=0.237  Sum_probs=116.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      .+.++++|||||++|+|+|..|++++              .+|+++++. ....  .+.   ...+.+...+++.+.. .
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G--------------~~Vt~v~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~  210 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYG--------------SKVIILHRRDAFRA--SKT---MQERVLNHPKIEVIWNSE  210 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS--CHH---HHHHHHTCTTEEEECSEE
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhC--------------Ceeeeecccccccc--cch---hhhhhhcccceeeEeeee
Confidence            34689999999999999999999887              899999986 4332  222   2344566678888877 5


Q ss_pred             eEEEeCC-----eEEE-----cCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375           90 VKDVDSQ-----KLIL-----NDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus        90 V~~v~~~-----~v~~-----~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      +.++...     .+.+     .+++++++|.|++++|.+|+.-+-...++.+++|.+ ||+++|| +.|+|||+|||+..
T Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~i-v~~~~~T-s~pgIyA~GDv~~~  288 (314)
T 4a5l_A          211 LVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYI-LTEGPKT-SVDGVFACGDVCDR  288 (314)
T ss_dssp             EEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCB-CCBTTBC-SSTTEEECSTTTCS
T ss_pred             eEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeE-eCCCCcc-CCCCEEEEEeccCC
Confidence            6666432     2333     245689999999999999995333445667777866 8899999 99999999999952


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                              ..+++..|+.||+.||.++.++++
T Consensus       289 --------~~~~~~~A~~~G~~AA~~~~~yL~  312 (314)
T 4a5l_A          289 --------VYRQAIVAAGSGCMAALSCEKWLQ  312 (314)
T ss_dssp             --------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cchHHHHHHHHHHHHHHHHHHHHh
Confidence                    245788899999999999998875

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.83  E-value=7.1e-20  Score=160.42  Aligned_cols=149  Identities=12%  Similarity=0.185  Sum_probs=121.0

Q ss_pred             ccCeEEEEccCcH-HHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceE
Q 023375           13 RLLHCVVVGGGPT-GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~-Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~   91 (283)
                      +.++++|||||.. ++|+|..+...+              .+|+++++...+.       ..+.+.|++.|++++.+.++
T Consensus       145 ~~~~~~VIggG~~~~~e~a~~~~~~~--------------~~v~i~~~~~~~~-------~~~~~~l~~~g~~~~~~~v~  203 (304)
T 4fk1_A          145 KDQPLIIISENEDHTLHMTKLVYNWS--------------TDLVIATNGNELS-------QTIMDELSNKNIPVITESIR  203 (304)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHTTTC--------------SCEEEECSSCCCC-------HHHHHHHHTTTCCEECSCEE
T ss_pred             cCCceeeecCCCchhhhHHHHHHhCC--------------ceEEEEeccccch-------hhhhhhhhccceeEeeeeEE
Confidence            4567888888865 567777776665              8899998764322       23456788899999988777


Q ss_pred             EEeCC-----eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375           92 DVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK  165 (283)
Q Consensus        92 ~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~  165 (283)
                      .+..+     .|++++|+++++|.+++++|.+|+ +++.+++++++++|+|.||+++|| +.|+|||+|||+..      
T Consensus       204 ~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~T-s~p~IyA~GDv~~~------  276 (304)
T 4fk1_A          204 TLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRT-SEKNIYLAGETTTQ------  276 (304)
T ss_dssp             EEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBC-SSTTEEECSHHHHT------
T ss_pred             EeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCcc-CCCCEEEEeccCCC------
Confidence            77654     588899999999988888776655 788889999999999999999999 99999999999952      


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          166 TVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                        .+.++..|+.||+.||.+|.+.+.
T Consensus       277 --~~~~~~~A~~~G~~AA~~i~~~L~  300 (304)
T 4fk1_A          277 --GPSSLIIAASQGNKAAIAINSDIT  300 (304)
T ss_dssp             --SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cchHHHHHHHHHHHHHHHHHHHHh
Confidence              266788899999999999998886

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.78  E-value=3.3e-18  Score=172.26  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=121.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      .++|+|||||++|+|+|..+.+++.             .+|+++++.  .+++.+++++     +.+++.||+++.+ .+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~~~~  393 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGA-------------RRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPFLSP  393 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTC-------------SEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECSEEE
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCC-------------CEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeCCCc
Confidence            4599999999999999999998761             389999986  4677776654     4577889999988 78


Q ss_pred             EEEeC--Ce---EEEc------CC---------cEEEeeEEEEcCCCCCc--hhhhc-cCCCCCCCCccccCC-CcccCC
Q 023375           91 KDVDS--QK---LILN------DG---------TEVPYGLLVWSTGVGPS--TLVKS-LDLPKSPGGRIGIDE-WLRVPS  146 (283)
Q Consensus        91 ~~v~~--~~---v~~~------~g---------~~i~~d~vi~a~G~~~~--~~~~~-~~l~~~~~g~i~Vd~-~l~~~~  146 (283)
                      +++..  +.   |++.      +|         +++++|.||+|+|.+|+  .+... .+++++++|+|.||+ ++|| +
T Consensus       394 ~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~T-s  472 (1025)
T 1gte_A          394 RKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-S  472 (1025)
T ss_dssp             EEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-S
T ss_pred             eEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCcc-C
Confidence            77753  32   3332      22         36899999999999864  45555 488888899999997 8998 8


Q ss_pred             CCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          147 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       147 ~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .|+|||+|||+..         |.++..|+.||+.+|.+|...+.
T Consensus       473 ~~~VfA~GD~~~~---------~~~~~~A~~~G~~aA~~i~~~L~  508 (1025)
T 1gte_A          473 EPWVFAGGDIVGM---------ANTTVESVNDGKQASWYIHKYIQ  508 (1025)
T ss_dssp             STTEEECSGGGCS---------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCC---------chHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999952         67899999999999999998775

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.76  E-value=2.9e-18  Score=158.59  Aligned_cols=168  Identities=13%  Similarity=0.104  Sum_probs=120.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcC-----CCC--CccEEEEEeCC-CCCCCCCH----------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS-----HVK--DYIHVTLIEAN-EILSSFDD----------------   68 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~-----~~~--~~~~V~li~~~-~~l~~~~~----------------   68 (283)
                      +.++|+|||+|++|+|+|.+|++....-...+++     .++  ...+|+++++. .+.+.+.+                
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~  225 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVI  225 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeee
Confidence            4689999999999999999999753211000000     011  11599999986 44333221                


Q ss_pred             ---H------------------HHHHHHHHHHh------CCCEEEeC-ceEEEeCC----eEEEc---------------
Q 023375           69 ---R------------------LRHYATTQLSK------SGVRLVRG-IVKDVDSQ----KLILN---------------  101 (283)
Q Consensus        69 ---~------------------~~~~~~~~l~~------~gV~v~~~-~V~~v~~~----~v~~~---------------  101 (283)
                         +                  +.+.+.+.+.+      +||+++++ .+.+|.++    .|+++               
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~  305 (456)
T 1lqt_A          226 DPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAK  305 (456)
T ss_dssp             CGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEE
T ss_pred             ChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCccccccc
Confidence               1                  12344455555      79999999 89999765    36654               


Q ss_pred             -CC--cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHH
Q 023375          102 -DG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ  178 (283)
Q Consensus       102 -~g--~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~q  178 (283)
                       +|  +++++|+||+++|.+|+++   .+++.+++|++.||+++|+++.|+|||+|||+..+        ......|+.|
T Consensus       306 ~~g~~~~i~~d~vi~a~G~~p~~l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp--------~~~i~~a~~~  374 (456)
T 1lqt_A          306 DTGEREELPAQLVVRSVGYRGVPT---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGP--------TGVIGTNKKD  374 (456)
T ss_dssp             EEEEEEEEECSEEEECSCEECCCC---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCS--------CSCTTHHHHH
T ss_pred             CCCceEEEEcCEEEEccccccCCC---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCC--------chhHHHHHHH
Confidence             34  4699999999999999984   46777888899999999965899999999999621        2234579999


Q ss_pred             HHHHHHHHHHHhh
Q 023375          179 GKYLFSLLNRIGK  191 (283)
Q Consensus       179 g~~~a~~i~~~~~  191 (283)
                      |..+|.||...+.
T Consensus       375 g~~~a~~i~~~l~  387 (456)
T 1lqt_A          375 AQDTVDTLIKNLG  387 (456)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988775

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.76  E-value=4.2e-18  Score=157.67  Aligned_cols=167  Identities=14%  Similarity=0.098  Sum_probs=118.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHh-hcC-----CC-CCcc-EEEEEeCC-CC--------------CCC----
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ-RYS-----HV-KDYI-HVTLIEAN-EI--------------LSS----   65 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~-~~~-----~~-~~~~-~V~li~~~-~~--------------l~~----   65 (283)
                      ..++|+|||||++|+|+|..|++.... +.+ +.+     .+ +.+. +|+++++. .+              +|.    
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~-l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~  222 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARILLTPPDH-LEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPM  222 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGG-GTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhchhh-hccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeE
Confidence            468999999999999999999952210 000 000     00 1124 89999986 33              231    


Q ss_pred             ---------------CCHH---HHHHHHHHHHh--------------CCCEEEeC-ceEEEeCC-------eEEEc----
Q 023375           66 ---------------FDDR---LRHYATTQLSK--------------SGVRLVRG-IVKDVDSQ-------KLILN----  101 (283)
Q Consensus        66 ---------------~~~~---~~~~~~~~l~~--------------~gV~v~~~-~V~~v~~~-------~v~~~----  101 (283)
                                     ++..   +.+.+.+.+.+              +||+++++ .+.+|.++       .|++.    
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l  302 (460)
T 1cjc_A          223 LDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRL  302 (460)
T ss_dssp             CCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             echhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEE
Confidence                           1111   22333444545              88999999 78888643       25443    


Q ss_pred             -----------CC--cEEEeeEEEEcCCCCCchhhhccCC-CCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcC
Q 023375          102 -----------DG--TEVPYGLLVWSTGVGPSTLVKSLDL-PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV  167 (283)
Q Consensus       102 -----------~g--~~i~~d~vi~a~G~~~~~~~~~~~l-~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~  167 (283)
                                 +|  +++++|+||+++|.+|+++   .++ +.+++|.+.||+++|+.+.|+|||+|||+..        
T Consensus       303 ~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g--------  371 (460)
T 1cjc_A          303 EGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRG--------  371 (460)
T ss_dssp             ESSGGGCEEEEEEEEEEEECSEEEECCCEECCCC---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHC--------
T ss_pred             ccccCCCcccCCCceEEEEcCEEEECCCCCCCCC---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcC--------
Confidence                       34  5799999999999999974   577 7888889999999999447999999999952        


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhh
Q 023375          168 LPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       168 ~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .......|+.||+.+|.||...+.
T Consensus       372 ~~~~i~~a~~~g~~aa~~i~~~l~  395 (460)
T 1cjc_A          372 PTGVITTTMTDSFLTGQILLQDLK  395 (460)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHH
Confidence            123466899999999999998876

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.76  E-value=5.3e-18  Score=143.03  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=107.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-----------------CC-------CCHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-----------------SS-------FDDR   69 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-----------------~~-------~~~~   69 (283)
                      .+|+|||||++|+++|..|++.+              .+|++||+. ...                 ..       ....
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g--------------~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~   69 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKG--------------VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWA   69 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHH
Confidence            57999999999999999999887              899999986 110                 00       1236


Q ss_pred             HHHHHHHHHHhC-CCEEEeCceEEEeC--C---eEEEcCCcEEEeeEEEEcCCCCCchh---------------------
Q 023375           70 LRHYATTQLSKS-GVRLVRGIVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTL---------------------  122 (283)
Q Consensus        70 ~~~~~~~~l~~~-gV~v~~~~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~~~~~---------------------  122 (283)
                      +...+.+.+++. |++++..+|+++..  +   .|.+.+|+++++|.||+|+|..++..                     
T Consensus        70 ~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l  149 (232)
T 2cul_A           70 FHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDL  149 (232)
T ss_dssp             HHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHH
T ss_pred             HHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhh
Confidence            677788888887 99999558888753  3   36677888899999999999954421                     


Q ss_pred             ---hhccCCCCCCCC--------c-------cccC------CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHH
Q 023375          123 ---VKSLDLPKSPGG--------R-------IGID------EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ  178 (283)
Q Consensus       123 ---~~~~~l~~~~~g--------~-------i~Vd------~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~q  178 (283)
                         +.+.++++.+..        .       ..+.      ..+..+++|+||++|||+ .         ..+.+.|++|
T Consensus       150 ~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~---------~g~~~~~~~~  219 (232)
T 2cul_A          150 LEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-R---------EGDYARMSEE  219 (232)
T ss_dssp             HHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-S---------CCCHHHHHHH
T ss_pred             CHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-c---------CccHHHHHHH
Confidence               112233222100        0       0000      012212899999999999 5         2278889999


Q ss_pred             HHHHHHHHHHHh
Q 023375          179 GKYLFSLLNRIG  190 (283)
Q Consensus       179 g~~~a~~i~~~~  190 (283)
                      |+.+|.+|...+
T Consensus       220 g~~~a~~i~~~l  231 (232)
T 2cul_A          220 GKRLAEHLLHEL  231 (232)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999999998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.76  E-value=9.5e-18  Score=155.50  Aligned_cols=138  Identities=10%  Similarity=0.042  Sum_probs=112.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V   90 (283)
                      ...++|+|||||++|+|+|.+|++.+              .+|+++++. .+++..-            ..||+++ ..|
T Consensus       195 ~~~k~VvVVG~G~sg~eiA~~l~~~g--------------~~V~li~~~~~~~~~~~------------~~~V~~~-~~V  247 (464)
T 2xve_A          195 FKDKTVLLVGSSYSAEDIGSQCYKYG--------------AKKLISCYRTAPMGYKW------------PENWDER-PNL  247 (464)
T ss_dssp             GTTSEEEEECCSTTHHHHHHHHHHTT--------------CSEEEEECSSCCCCCCC------------CTTEEEC-SCE
T ss_pred             cCCCEEEEEcCCCCHHHHHHHHHHhC--------------CeEEEEEECCCCCCCCC------------CCceEEc-CCe
Confidence            45789999999999999999999987              899999986 6655321            2478877 678


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhc-cCCCCCCCCccccCCC---cccCCCCCEEEeccccccCcCCCC
Q 023375           91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDEW---LRVPSVQDVFAVGDCSGYLESTGK  165 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~-~~l~~~~~g~i~Vd~~---l~~~~~~~VfaiGD~a~~~~~~~~  165 (283)
                      +++++++|+++||+++++|.||+|+|.+|+ +++.. ++++.+.++++ ++.+   +++ +.|+||++|||+.       
T Consensus       248 ~~i~~~~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~~~~~~~~t-~~p~i~aiGd~~~-------  318 (464)
T 2xve_A          248 VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWE-DNPKFFYIGMQDQ-------  318 (464)
T ss_dssp             EEECSSEEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-SSEETTTEES-SSTTEEECSCSCC-------
T ss_pred             EEEeCCEEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCccc-ccccceEecC-CCCCEEEEeCccc-------
Confidence            899888999999999999999999999999 66665 67777665565 4433   445 8999999999884       


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHH
Q 023375          166 TVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                         ......|..||+++|++|..
T Consensus       319 ---~~~~~~a~~qa~~~a~~l~G  338 (464)
T 2xve_A          319 ---WYSFNMFDAQAWYARDVIMG  338 (464)
T ss_dssp             ---SSCHHHHHHHHHHHHHHHTT
T ss_pred             ---ccchHHHHHHHHHHHHHHcC
Confidence               34678899999999998853

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.74  E-value=1.9e-17  Score=153.03  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=114.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC--------------------CCHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS--------------------FDDRLR   71 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~--------------------~~~~~~   71 (283)
                      +.++|+|||||.+|+|+|.+|++..+            ..+|+++++. .++|.                    ++++..
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~------------~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~  293 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYP------------SVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAER  293 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCT------------TEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHH
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCC------------CCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHH
Confidence            46899999999999999999998721            1899999997 56552                    233333


Q ss_pred             HHHHHHHHh--------------------------CCCEEEeC-ceEEEeCC--e--EEEc---CCc--EEEeeEEEEcC
Q 023375           72 HYATTQLSK--------------------------SGVRLVRG-IVKDVDSQ--K--LILN---DGT--EVPYGLLVWST  115 (283)
Q Consensus        72 ~~~~~~l~~--------------------------~gV~v~~~-~V~~v~~~--~--v~~~---~g~--~i~~d~vi~a~  115 (283)
                      ..+.+.+..                          .||+++++ +|++++.+  .  +++.   +|+  ++++|.||+|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~At  373 (463)
T 3s5w_A          294 ERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILAT  373 (463)
T ss_dssp             HHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECC
T ss_pred             HHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEee
Confidence            333333332                          69999999 79888653  2  5665   665  49999999999


Q ss_pred             CCCCc---hhhhccCCCCCCCCccccCCCcccCC----CCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          116 GVGPS---TLVKSLDLPKSPGGRIGIDEWLRVPS----VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       116 G~~~~---~~~~~~~l~~~~~g~i~Vd~~l~~~~----~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      |.+|+   +++..+....   |++.||+++++..    .++||++|||.....    ...|.....|.+++++++.++.+
T Consensus       374 G~~p~~~~~~l~~l~~~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g----~~~~~l~~~a~r~~~i~~~~~~~  446 (463)
T 3s5w_A          374 GYERQLHRQLLEPLAEYL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASHG----LSDTLLSVLPVRAEEISGSLYQH  446 (463)
T ss_dssp             CEECCC-CTTTGGGGGGB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHHC----TTTTSSTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccchhHHHHHHh---CCcccCcccccccCCCCCCeEEEcCCCcccCC----cCccchhHHHHHHHHHHHHHHhh
Confidence            99998   4555443322   7899999999854    356999999986422    23467888899999999877766


Q ss_pred             Hhh
Q 023375          189 IGK  191 (283)
Q Consensus       189 ~~~  191 (283)
                      ...
T Consensus       447 ~~~  449 (463)
T 3s5w_A          447 LKP  449 (463)
T ss_dssp             HC-
T ss_pred             cCC
Confidence            543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.73  E-value=5.8e-18  Score=164.14  Aligned_cols=143  Identities=17%  Similarity=0.091  Sum_probs=116.0

Q ss_pred             ccCeEEEEc--cCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCC-HHHHHHHHHHHHhCCCEEEeC
Q 023375           13 RLLHCVVVG--GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        13 ~~~~vvVvG--gG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~-~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      ..++|+|||  ||++|+|+|..|++.+              .+|+++++. .+++... +.....+.+.|++.||+++++
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~  587 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKG--------------YEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTD  587 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTT--------------CEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEES
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCC--------------CeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcC
Confidence            456899999  9999999999999887              899999997 6665443 455778888999999999999


Q ss_pred             -ceEEEeCCeEEEc-----CCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375           89 -IVKDVDSQKLILN-----DGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus        89 -~V~~v~~~~v~~~-----~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                       +|++++.+++.+.     +++++++|.||+|+|.+|+. +...++..    +.       ++ +.|+||++|||+.   
T Consensus       588 ~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~----~~-------~t-~~~~VyaiGD~~~---  652 (690)
T 3k30_A          588 HAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVAR----RD-------AG-EIASVRGIGDAWA---  652 (690)
T ss_dssp             EEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHH----HH-------HT-SCSEEEECGGGTS---
T ss_pred             cEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhh----hc-------cc-CCCCEEEEeCCCc---
Confidence             8999999876553     45689999999999999984 44332211    11       45 7899999999995   


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                             ++....|+.||+.+|.||...+.
T Consensus       653 -------~~~~~~A~~~g~~aa~~i~~~l~  675 (690)
T 3k30_A          653 -------PGTIAAAVWSGRRAAEEFDAVLP  675 (690)
T ss_dssp             -------CBCHHHHHHHHHHHHHHTTCCCC
T ss_pred             -------hhhHHHHHHHHHHHHHHHHhhcc
Confidence                   56777899999999999987764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.72  E-value=1.1e-17  Score=163.13  Aligned_cols=144  Identities=16%  Similarity=0.233  Sum_probs=115.5

Q ss_pred             ccCeEEEEc--cCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEeC
Q 023375           13 RLLHCVVVG--GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        13 ~~~~vvVvG--gG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~--~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      ..++|+|||  ||++|+|+|..|++++              .+|+++++..+++.  ++.. ...+.+.|++.||+++++
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G--------------~~Vtlv~~~~l~~~~~~~~~-~~~~~~~l~~~GV~i~~~  591 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAG--------------HEVTIVSGVHLANYMHFTLE-YPNMMRRLHELHVEELGD  591 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTT--------------CEEEEEESSCTTHHHHHTTC-HHHHHHHHHHTTCEEECS
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcC--------------CEEEEEeccccccccccccc-HHHHHHHHHhCCCEEEcC
Confidence            357999999  9999999999999987              89999998774331  2222 466778899999999999


Q ss_pred             -ceEEEeCCeEEEc----CC-cE------------------EEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcc
Q 023375           89 -IVKDVDSQKLILN----DG-TE------------------VPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLR  143 (283)
Q Consensus        89 -~V~~v~~~~v~~~----~g-~~------------------i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~  143 (283)
                       +|++|+++.+.+.    ++ ++                  +++|.||+|+|.+|+. +...++        ..+|++++
T Consensus       592 ~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~--------~~vd~~~~  663 (729)
T 1o94_A          592 HFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELK--------ARESEWAE  663 (729)
T ss_dssp             EEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHH--------HTGGGTGG
T ss_pred             cEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHh--------hhcccccc
Confidence             8999998876542    33 33                  9999999999999994 444332        13788899


Q ss_pred             cCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          144 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       144 ~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      + +.|+||++|||+.          |.++..|+.||+.+|.||...+
T Consensus       664 t-~~~~VyAiGD~~~----------~~~~~~A~~~G~~aA~~i~~~l  699 (729)
T 1o94_A          664 N-DIKGIYLIGDAEA----------PRLIADATFTGHRVAREIEEAN  699 (729)
T ss_dssp             G-TCCEEEECGGGTS----------CCCHHHHHHHHHHHHHTTTSSC
T ss_pred             c-CCCCeEEEeCccc----------hhhHHHHHHHHHHHHHHhhhhc
Confidence            8 8999999999984          5678899999999999997654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.67  E-value=2.1e-16  Score=158.19  Aligned_cols=139  Identities=19%  Similarity=0.241  Sum_probs=112.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      .++|+|||||++|+|+|..|++.+              .+|+++++. .+++    .     .+.+++.||+++++ .|+
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G--------------~~Vtvv~~~~~~~~----~-----~~~l~~~GV~v~~~~~v~  340 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATG--------------GVVAVIDARSSISA----A-----AAQAVADGVQVISGSVVV  340 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGT--------------CCSEEEESCSSCCH----H-----HHHHHHTTCCEEETEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcC--------------CcEEEEECCCccch----h-----HHHHHhCCeEEEeCCEeE
Confidence            479999999999999999999887              789999987 5442    1     56688999999999 899


Q ss_pred             EEeC--C----eEEEcC-------C--cEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCccc----CCCCCEE
Q 023375           92 DVDS--Q----KLILND-------G--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRV----PSVQDVF  151 (283)
Q Consensus        92 ~v~~--~----~v~~~~-------g--~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~----~~~~~Vf  151 (283)
                      +++.  +    .|++.+       |  +++++|.|++++|.+|+. ++...      .+.+.||++++.    ++.|+||
T Consensus       341 ~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~------~g~i~vd~~~~~~v~~ts~p~Iy  414 (965)
T 2gag_A          341 DTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR------QGKLDWDTTIHAFVPADAVANQH  414 (965)
T ss_dssp             EEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT------TCCEEEETTTTEEEECSCCTTEE
T ss_pred             EEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC------CCcEEEcCcccccccCCCCCCEE
Confidence            9975  3    566664       4  679999999999999994 44332      467889988871    4899999


Q ss_pred             EeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          152 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       152 aiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      |+|||+..         +.. ..|..||+.+|.||...+.
T Consensus       415 AaGD~a~~---------~~l-~~A~~~G~~aA~~i~~~lg  444 (965)
T 2gag_A          415 LAGAMTGR---------LDT-ASALSTGAATGAAAATAAG  444 (965)
T ss_dssp             ECGGGGTC---------CSH-HHHHHHHHHHHHHHHHHTT
T ss_pred             EEEecCCc---------hhH-HHHHHHHHHHHHHHHHHcC
Confidence            99999953         333 4899999999999988764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.66  E-value=4.3e-16  Score=143.57  Aligned_cols=138  Identities=14%  Similarity=0.129  Sum_probs=106.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V   90 (283)
                      .+.++|+|||||++|+|+|.+|++.+              .+ |+++++...+              +.+.||.+. ..|
T Consensus       210 ~~~k~VvVvG~G~sg~e~A~~l~~~~--------------~~~V~l~~r~~~~--------------l~~~~i~~~-~~v  260 (447)
T 2gv8_A          210 FVGESVLVVGGASSANDLVRHLTPVA--------------KHPIYQSLLGGGD--------------IQNESLQQV-PEI  260 (447)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTS--------------CSSEEEECTTCCS--------------CBCSSEEEE-CCE
T ss_pred             cCCCEEEEEccCcCHHHHHHHHHHHh--------------CCcEEEEeCCCCc--------------CCCCCeEEe-cCe
Confidence            35789999999999999999999887              67 9999987322              455677742 378


Q ss_pred             EEEe--CCeEEEcCCcE-EEeeEEEEcCCCCCc-hh-----hhccCCCCCCCCccccCCCccc--CCCCCEEEecccccc
Q 023375           91 KDVD--SQKLILNDGTE-VPYGLLVWSTGVGPS-TL-----VKSLDLPKSPGGRIGIDEWLRV--PSVQDVFAVGDCSGY  159 (283)
Q Consensus        91 ~~v~--~~~v~~~~g~~-i~~d~vi~a~G~~~~-~~-----~~~~~l~~~~~g~i~Vd~~l~~--~~~~~VfaiGD~a~~  159 (283)
                      +++.  +..|+++||++ +++|.||+|+|.+|+ ++     +..++..+..++.+.++.+.++  .+.|++|++||+.. 
T Consensus       261 ~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~-  339 (447)
T 2gv8_A          261 TKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALH-  339 (447)
T ss_dssp             EEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBS-
T ss_pred             EEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEecccc-
Confidence            8884  45899999987 799999999999999 66     5544222223455556655552  48899999999984 


Q ss_pred             CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          160 LESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                               ...++.|..||+++|++|..
T Consensus       340 ---------~~~~~~a~~qa~~~a~~~~g  359 (447)
T 2gv8_A          340 ---------VVPFPTSQAQAAFLARVWSG  359 (447)
T ss_dssp             ---------SCHHHHHHHHHHHHHHHHTT
T ss_pred             ---------ccCchHHHHHHHHHHHHHcC
Confidence                     23688999999999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.65  E-value=6.2e-16  Score=149.49  Aligned_cols=149  Identities=18%  Similarity=0.204  Sum_probs=114.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhH------HHhh----------------cCCCC-CccEEEEEeCC-CCC-CCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRD------VRQR----------------YSHVK-DYIHVTLIEAN-EIL-SSFD   67 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~------~~~~----------------~~~~~-~~~~V~li~~~-~~l-~~~~   67 (283)
                      ..++|+|||||++|+|+|..|++.+.+.      +.+.                +|... ...+|+++++. ..+ +.++
T Consensus       493 ~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~  572 (671)
T 1ps9_A          493 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLG  572 (671)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSC
T ss_pred             CCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccc
Confidence            4689999999999999999999765311      1111                12222 34789999986 444 4577


Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEE-cCC--cEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCc
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLIL-NDG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWL  142 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~-~~g--~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l  142 (283)
                      +.....+.+.|++.||+++++ +|++++++++++ .+|  +++++|.||||+|.+|+. +...+                
T Consensus       573 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l----------------  636 (671)
T 1ps9_A          573 KTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQPL----------------  636 (671)
T ss_dssp             TTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHHH----------------
T ss_pred             cccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHHH----------------
Confidence            777888889999999999999 899999888877 677  579999999999999984 33322                


Q ss_pred             ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHH
Q 023375          143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL  186 (283)
Q Consensus       143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i  186 (283)
                      +. ..++||++|||+..        .+..++.|++||..+|.||
T Consensus       637 ~~-~g~~v~aiGD~~~~--------~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          637 ID-SGKTVHLIGGCDVA--------MELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             HT-TTCCEEECGGGTCC--------SSCCHHHHHHHHHHHHHHC
T ss_pred             Hh-cCCCEEEECCcCcc--------CchhHHHHHHHHHHHHHhC
Confidence            11 23789999999963        2457999999999999985

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.59  E-value=5.3e-15  Score=138.03  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=87.4

Q ss_pred             HHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCC--CCCCccc-cCCCcccCC
Q 023375           76 TQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPK--SPGGRIG-IDEWLRVPS  146 (283)
Q Consensus        76 ~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~--~~~g~i~-Vd~~l~~~~  146 (283)
                      +.+++.||+++++ .|++++.+    .+++++|+++++|.||+++|.+|+. +++.+++++  +++|++. ||++++  +
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~--s  342 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR--I  342 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE--E
T ss_pred             HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC--c
Confidence            3466789999999 89999765    3677889999999999999999994 888888765  4678887 899998  7


Q ss_pred             CCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          147 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       147 ~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      .|+||++|||+.          +..+..|..||+.+|.||...+
T Consensus       343 ~~~vya~GD~~~----------~~~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          343 KDGIYVAGSAVS----------IKPHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             ETTEEECSTTTC----------CCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeccCC----------ccCHHHHHHHHHHHHHHHHHHc
Confidence            899999999995          3468899999999999998765

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.58  E-value=4.8e-15  Score=139.70  Aligned_cols=103  Identities=16%  Similarity=0.257  Sum_probs=77.2

Q ss_pred             hCCCEEEe---CceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCch-hhhccCC------CCCC--CCccccCCCcccCCC
Q 023375           80 KSGVRLVR---GIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDL------PKSP--GGRIGIDEWLRVPSV  147 (283)
Q Consensus        80 ~~gV~v~~---~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l------~~~~--~g~i~Vd~~l~~~~~  147 (283)
                      +.+|+++.   ..|++|++++|+++||+++++|.||+|||+.++. ++..+++      .+++  ++.......+.+.+.
T Consensus       342 ~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~v~gf  421 (540)
T 3gwf_A          342 RPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTANF  421 (540)
T ss_dssp             STTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCBHHHHTSSSCCCBTTTBCTTC
T ss_pred             CCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCcCHHHhhccChhhccccccCCC
Confidence            45899984   4899999999999999999999999999999985 5544332      1111  122344455778899


Q ss_pred             CCEEEe-ccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          148 QDVFAV-GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       148 ~~Vfai-GD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ||+|.+ |..+.         .......+..|++++++.|....+
T Consensus       422 PN~f~~~Gp~~~---------~~s~~~~~e~q~~~i~~~i~~~~~  457 (540)
T 3gwf_A          422 PNWFMVLGPNGP---------FTNLPPSIETQVEWISDTIGYAER  457 (540)
T ss_dssp             TTEEESSCSSCB---------CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCCCC---------CccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 76653         244567888999999999877665

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.48  E-value=2.4e-13  Score=128.25  Aligned_cols=102  Identities=17%  Similarity=0.204  Sum_probs=77.4

Q ss_pred             CCCEEE---eCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccC---------CCcccCCC
Q 023375           81 SGVRLV---RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGID---------EWLRVPSV  147 (283)
Q Consensus        81 ~gV~v~---~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd---------~~l~~~~~  147 (283)
                      .+|+++   ...|+++++++|+++| +++++|.||||||+.++ .+...+++. ..+|....+         ..+.+.++
T Consensus       351 ~~v~lv~~~~~~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~-g~~G~~l~~~w~~~~~~y~~~~v~~~  428 (542)
T 1w4x_A          351 DNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFKIDIR-GVGNVALKEKWAAGPRTYLGLSTAGF  428 (542)
T ss_dssp             TTEEEEETTTSCEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHTSEEE-CGGGCBHHHHTTTSCCCBTTTBCTTS
T ss_pred             CCEEEEecCCCCceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCceeeE-CCCCCCHHHhhcCchheecccccCCC
Confidence            357777   3379999999999999 99999999999999996 555543322 233544443         23667789


Q ss_pred             CCEEEe-ccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          148 QDVFAV-GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       148 ~~Vfai-GD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ||+|++ |+.+..       ..+..++.|.+|++++|++|....+
T Consensus       429 Pn~f~~~G~~~~~-------~~~~~~~~~e~q~~~ia~~i~~~~~  466 (542)
T 1w4x_A          429 PNLFFIAGPGSPS-------ALSNMLVSIEQHVEWVTDHIAYMFK  466 (542)
T ss_dssp             TTEEESSCTTSSG-------GGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCc-------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999998 988731       2366678999999999999988776

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.48  E-value=1.6e-13  Score=129.43  Aligned_cols=103  Identities=12%  Similarity=0.237  Sum_probs=71.5

Q ss_pred             CCCEEEe--C-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCcc---------ccCCCcccCCC
Q 023375           81 SGVRLVR--G-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRI---------GIDEWLRVPSV  147 (283)
Q Consensus        81 ~gV~v~~--~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i---------~Vd~~l~~~~~  147 (283)
                      .+|+++.  + .|++|++++|+++|| ++++|.||+|||+.+.+ ++...++ ...+|..         .....+.+.+.
T Consensus       351 ~nV~lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i-~g~~G~~l~~~w~~~~~~y~g~~~~gf  428 (545)
T 3uox_A          351 DNVHLVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVTGSLDRIDI-RGKDNVRLIDAWAEGPSTYLGLQARGF  428 (545)
T ss_dssp             TTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSSCSCTTSEE-ECGGGCBHHHHTTTSCCCBTTTBCTTC
T ss_pred             CCEEEEecCCCCceEEccCeEEeCCC-eeecCEEEECCccccccccCCCceE-ECCCCccHHHhhccccceeeccccCCC
Confidence            3889984  4 899999999999999 99999999999999752 3222221 1122322         22224567789


Q ss_pred             CCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          148 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       148 ~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ||+|.+.--..      ..........+..|++++++.|....+
T Consensus       429 PN~f~~~gp~~------~~~~~s~~~~~e~~~~~i~~~i~~~~~  466 (545)
T 3uox_A          429 PNFFTLVGPHN------GSTFCNVGVCGGLQAEWVLRMISYMKD  466 (545)
T ss_dssp             TTEEECSSGGG------TGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCC------CCccccHHHHHHHHHHHHHHHHHHHHH
Confidence            99998843221      112355667888999999999887665

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.44  E-value=1.4e-12  Score=123.05  Aligned_cols=103  Identities=16%  Similarity=0.239  Sum_probs=72.7

Q ss_pred             CCCEEE---eCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCC---------ccccCCCcccCCC
Q 023375           81 SGVRLV---RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG---------RIGIDEWLRVPSV  147 (283)
Q Consensus        81 ~gV~v~---~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g---------~i~Vd~~l~~~~~  147 (283)
                      .+|+++   ...|++|++++|.++|| ++++|.||+|||+.++. ++...++. ..+|         .......+.+.+.
T Consensus       356 ~~V~lvd~~~~~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~-g~~G~~l~~~w~~~~~~y~g~~~~gf  433 (549)
T 4ap3_A          356 DNVELVDLRSTPIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIV-GRGGRTLKETWAAGPRTYLGLGIDGF  433 (549)
T ss_dssp             TTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGGGSEEE-CGGGCBHHHHTTTSCCCBTTTBCTTC
T ss_pred             CCEEEEeCCCCCceEEeCCcEEeCCC-ceecCEEEECCcccccccccCceeEE-CCCCcCHHHhhccchhhccccccCCC
Confidence            388998   55899999999999999 99999999999999875 44443321 1112         2333344567789


Q ss_pred             CCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          148 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       148 ~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ||.|.+.--.      ...........+..|++++++.|....+
T Consensus       434 PN~f~~~Gp~------~~~~~~s~~~~~e~~~~~i~~~i~~~~~  471 (549)
T 4ap3_A          434 PNFFNLTGPG------SPSVLANMVLHSELHVDWVADAIAYLDA  471 (549)
T ss_dssp             TTEEETTCTT------SCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCC------CCCcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999863211      1112345567788999999998876665

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.36  E-value=2.9e-12  Score=110.99  Aligned_cols=160  Identities=17%  Similarity=0.161  Sum_probs=105.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~-~~l~~---------------------------   65 (283)
                      .+|+|||||++|+++|..|++. +              .+|+|+|+. .+...                           
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G--------------~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~  105 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPN--------------VQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVA  105 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTT--------------SCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCC
T ss_pred             cCEEEECccHHHHHHHHHHHHcCC--------------CeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCC
Confidence            4799999999999999999985 5              899999986 33110                           


Q ss_pred             -----------CCHHHHHHHHHHHHh-CCCEEEeC-ceEEEe--CC---eEEEc---------CC-----cEEEeeEEEE
Q 023375           66 -----------FDDRLRHYATTQLSK-SGVRLVRG-IVKDVD--SQ---KLILN---------DG-----TEVPYGLLVW  113 (283)
Q Consensus        66 -----------~~~~~~~~~~~~l~~-~gV~v~~~-~V~~v~--~~---~v~~~---------~g-----~~i~~d~vi~  113 (283)
                                 ....+...+.+.+.+ .||+++++ +|+++.  .+   +|.+.         ++     .++++|.||.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~  185 (284)
T 1rp0_A          106 YDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVS  185 (284)
T ss_dssp             CEECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEE
T ss_pred             cccCCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEE
Confidence                       123444455566655 69999999 898885  33   34442         32     5799999999


Q ss_pred             cCCCCCc--hh----hhccC--CCCCCCCccccCC-------CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHH
Q 023375          114 STGVGPS--TL----VKSLD--LPKSPGGRIGIDE-------WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ  178 (283)
Q Consensus       114 a~G~~~~--~~----~~~~~--l~~~~~g~i~Vd~-------~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~q  178 (283)
                      |+|..+.  .+    ...++  ..+.....+.++.       ..++ ..|++|++||++....  +....-++...|..+
T Consensus       186 AtG~~s~~~~~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~-~~p~i~a~G~~~~~~~--g~~~~gp~~~~~~~s  262 (284)
T 1rp0_A          186 SCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE-VVPGMIVTGMEVAEID--GAPRMGPTFGAMMIS  262 (284)
T ss_dssp             CCCSSSTTTTHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEE-EETTEEECTHHHHHHH--TCEECCSCCHHHHHH
T ss_pred             CCCCchHHHHHHHHHhhhccCCCCcCCcCCchhhhhhHHHhhcccc-ccCCEEEEeeehhhhc--CCCCcChHHHHHHHh
Confidence            9998765  21    11112  1111111222221       2233 5699999999875321  211123356678899


Q ss_pred             HHHHHHHHHHHhh
Q 023375          179 GKYLFSLLNRIGK  191 (283)
Q Consensus       179 g~~~a~~i~~~~~  191 (283)
                      |+.+|.+|...+.
T Consensus       263 G~~~a~~i~~~l~  275 (284)
T 1rp0_A          263 GQKAGQLALKALG  275 (284)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998775

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.06  E-value=5.5e-10  Score=100.83  Aligned_cols=94  Identities=17%  Similarity=0.370  Sum_probs=74.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHH-------------HHHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH-------------YATTQLS   79 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~-------------~~~~~l~   79 (283)
                      +..+|+|||||++|+.+|..|....              .+|+||++...++...+.+..             ...+.++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~--------------~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~   73 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKC--------------DDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYE   73 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTC--------------SCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHH
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCC--------------CEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHH
Confidence            4458999999999999999994333              899999997544332222222             2345677


Q ss_pred             hCCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.||+++++ +|++++.+  .|++++|+++.||.+|+|||.+|.
T Consensus        74 ~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~  117 (385)
T 3klj_A           74 KNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIAN  117 (385)
T ss_dssp             HTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcC
Confidence            899999999 89999865  788999999999999999999876

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.03  E-value=1.1e-10  Score=106.80  Aligned_cols=94  Identities=22%  Similarity=0.394  Sum_probs=72.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC---CCCCCH---------HHHHHHHHHHHhCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LSSFDD---------RLRHYATTQLSKSG   82 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~---l~~~~~---------~~~~~~~~~l~~~g   82 (283)
                      |+|||||||++|+.+|..|++..+            +.+||||++++.   .|.++.         ++...+.+.+++.|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~------------~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~g   70 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMP------------DLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFN   70 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT------------TCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGT
T ss_pred             CcEEEECCCHHHHHHHHHHhccCc------------CCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCC
Confidence            589999999999999999987653            289999998732   122111         11111234567789


Q ss_pred             CEEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           83 VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        83 V~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |+++.++|++|+.+  .|++++|++++||.+|+|+|.++.
T Consensus        71 v~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           71 IEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             EEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE
T ss_pred             cEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc
Confidence            99999999999865  799999999999999999998653

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.01  E-value=1e-09  Score=95.53  Aligned_cols=93  Identities=13%  Similarity=0.237  Sum_probs=76.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CC--------CCCC----CHHHHHHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LSSF----DDRLRHYATTQL   78 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~--------l~~~----~~~~~~~~~~~l   78 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|++||+.   ..        .|.+    ..++.+++.+.+
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYM--------------LKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHI   80 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHH
T ss_pred             ccCEEEECccHHHHHHHHHHHHCC--------------CcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHH
Confidence            368999999999999999999876              899999984   11        1222    257788888889


Q ss_pred             HhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           79 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ++.|++++..+|.+++.+    .+.+.+++++.+|.+|+|+|..|.
T Consensus        81 ~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~  126 (323)
T 3f8d_A           81 EKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR  126 (323)
T ss_dssp             HTTTCCEEESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC
T ss_pred             HHcCCEEEEEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc
Confidence            999999988878888655    477778889999999999999876

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.00  E-value=4.3e-10  Score=101.70  Aligned_cols=95  Identities=25%  Similarity=0.300  Sum_probs=72.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC--CCCCCHHH---------HHHHHHHHHhCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRL---------RHYATTQLSKSG   82 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~--l~~~~~~~---------~~~~~~~l~~~g   82 (283)
                      .|+|||||||+.|+.+|..|++.+.            +.+|+|||+++.  ...+...+         ...-.+.+.++|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~------------~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~g   69 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADP------------SIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHG   69 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT------------TSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTT
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCc------------CCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCC
Confidence            5799999999999999999987652            279999998732  11111110         111124466789


Q ss_pred             CEEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           83 VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        83 V~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |+++.++|++|+.+  .+++.+|++++||.+|+|+|.+++
T Consensus        70 v~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~  109 (401)
T 3vrd_B           70 IQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL  109 (401)
T ss_dssp             CEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             CEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccc
Confidence            99999999999865  688899999999999999999876

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.00  E-value=2.1e-09  Score=94.82  Aligned_cols=91  Identities=16%  Similarity=0.243  Sum_probs=73.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC---------------------CCCCC-----
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI---------------------LSSFD-----   67 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~---------------------l~~~~-----   67 (283)
                      .+|+|||||++|+.+|..|++.+              .+|++||+. .+                     ++.++     
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g--------------~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSG--------------LSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQ   69 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSS--------------CCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCc
Confidence            58999999999999999999876              899999986 32                     11111     


Q ss_pred             ------HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCCc
Q 023375           68 ------DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        68 ------~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                            ..+.+++.+.+++.|++++.+ +|++++.  +.   |.+.++ ++.+|.||+|+|..+.
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A           70 GPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGE  133 (357)
T ss_dssp             SSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence                  678888999999999999998 8988864  33   555666 8999999999996443

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.99  E-value=7.8e-10  Score=101.36  Aligned_cols=96  Identities=25%  Similarity=0.412  Sum_probs=75.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---CC---------CCHHHHHHHHHHHHhC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SS---------FDDRLRHYATTQLSKS   81 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---~~---------~~~~~~~~~~~~l~~~   81 (283)
                      .++|+|||||++|+++|..|++...           .+.+|+||++....   |.         ..+++...+.+.+++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~-----------~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~   72 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALG-----------SGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERK   72 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHG-----------GGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTT
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCC-----------CcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHC
Confidence            4689999999999999999998321           12899999987322   21         1223334456777889


Q ss_pred             CCEEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ||+++.++|++++.+  .|++++|+++.||.+|+|+|.+|+
T Consensus        73 gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~  113 (437)
T 3sx6_A           73 GIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA  113 (437)
T ss_dssp             TCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC
T ss_pred             CCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC
Confidence            999997799999875  688899999999999999999887

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.99  E-value=2.1e-09  Score=92.50  Aligned_cols=92  Identities=20%  Similarity=0.323  Sum_probs=74.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC----------CCC----CCHHHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----------LSS----FDDRLRHYATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~----------l~~----~~~~~~~~~~~~l~~   80 (283)
                      .+|+|||||++|+.+|..|++.+              .+|++||++..          .+.    ...++..++.+.+.+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRAR--------------KNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIER   68 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999887              89999996421          111    124677888888888


Q ss_pred             C-CCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 S-GVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~-gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      . +++++.++|++++.+    .|.+.+++++.+|.+|+|+|..|.
T Consensus        69 ~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~  113 (297)
T 3fbs_A           69 YPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE  113 (297)
T ss_dssp             CTTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE
T ss_pred             cCCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC
Confidence            7 789887788888654    577888989999999999999875

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.96  E-value=2.1e-09  Score=94.23  Aligned_cols=96  Identities=21%  Similarity=0.267  Sum_probs=76.3

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-----C------------CCCC-----CH
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-----I------------LSSF-----DD   68 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-----~------------l~~~-----~~   68 (283)
                      .+...+|+|||||++|+.+|..|++.+              .+|+|||+..     +            .|.+     ..
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   84 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAE--------------IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGS   84 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHH
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHH
Confidence            345679999999999999999999887              8999999832     1            1232     34


Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEeCC--eEEE-----cCCcEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSKSGVRLVRGIVKDVDSQ--KLIL-----NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~~V~~v~~~--~v~~-----~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ++..++.+.+++.|++++.+.|.+++.+  .+.+     .++.++.+|.+|+|+|..|.
T Consensus        85 ~~~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~  143 (338)
T 3itj_A           85 ELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK  143 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC
Confidence            7888889999999999999888888764  3443     36778999999999999765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.93  E-value=5.4e-09  Score=91.55  Aligned_cols=93  Identities=19%  Similarity=0.263  Sum_probs=75.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC------------CCCC-----CHHHHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATT   76 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~------------l~~~-----~~~~~~~~~~   76 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||+..+            .|.+     ..++.+++.+
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   73 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQ--------------LSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQ   73 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHH
Confidence            358999999999999999999876              89999998632            1222     2467778888


Q ss_pred             HHHhCCCEEEeCceEEEeCC-------eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           77 QLSKSGVRLVRGIVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        77 ~l~~~gV~v~~~~V~~v~~~-------~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+++.|++++.++|.+++.+       .|.+.+|+++.+|.+|+|+|..|.
T Consensus        74 ~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~  124 (325)
T 2q7v_A           74 QAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR  124 (325)
T ss_dssp             HHHHTTCEEEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             HHHHcCCEEEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence            88999999988888877533       466778889999999999999765

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.92  E-value=6.6e-09  Score=90.15  Aligned_cols=94  Identities=16%  Similarity=0.194  Sum_probs=74.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEE-EeCCCC------------CCCCC-----HHHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL-IEANEI------------LSSFD-----DRLRHYA   74 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~l-i~~~~~------------l~~~~-----~~~~~~~   74 (283)
                      +..+|+|||||++|+.+|..|++.+              .+|++ +|++.+            .|.++     .++..++
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGG--------------LKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPW   68 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHT--------------CSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHH
Confidence            3468999999999999999999876              88999 986421            23333     5788888


Q ss_pred             HHHHHhCCCEEEeCceEEE-eC--CeEE--EcCCcEEEeeEEEEcCCCCCc
Q 023375           75 TTQLSKSGVRLVRGIVKDV-DS--QKLI--LNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        75 ~~~l~~~gV~v~~~~V~~v-~~--~~v~--~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+++.|++++.++|.++ +.  +.+.  +.++.++.+|.+|+|+|..|.
T Consensus        69 ~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~  119 (315)
T 3r9u_A           69 SEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK  119 (315)
T ss_dssp             HHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             HHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC
Confidence            9999999999998888888 44  3444  543338999999999999775

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.92  E-value=1.5e-08  Score=88.91  Aligned_cols=91  Identities=18%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------------CCC----CHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------------SSF----DDRLRHY   73 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------------~~~----~~~~~~~   73 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||+. .+.               +.+    ..++..+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRG--------------LSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKG   70 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHH
Confidence            358999999999999999998876              899999986 321               111    2567777


Q ss_pred             HHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCC
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      +.+.+++.+++++.+ +|++++.+    .|.+.+|+++.+|.||+|+|..
T Consensus        71 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           71 LVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             HHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            888888899999988 89888653    3666778889999999999995

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.91  E-value=1.7e-08  Score=94.07  Aligned_cols=87  Identities=15%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             CeEEEcCCcEEEeeEEEEcCCCCCch--hh-hcc-CCCCCCCCccccCCCcccC-------CCCCEEEeccccccCcCCC
Q 023375           96 QKLILNDGTEVPYGLLVWSTGVGPST--LV-KSL-DLPKSPGGRIGIDEWLRVP-------SVQDVFAVGDCSGYLESTG  164 (283)
Q Consensus        96 ~~v~~~~g~~i~~d~vi~a~G~~~~~--~~-~~~-~l~~~~~g~i~Vd~~l~~~-------~~~~VfaiGD~a~~~~~~~  164 (283)
                      +++.+.+|+++++|.||+|||++++.  ++ ..+ .+..+.+|++.|+.++++.       ..++||+.|-+-+. .   
T Consensus       386 ~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~t-h---  461 (501)
T 4b63_A          386 EGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERT-H---  461 (501)
T ss_dssp             ------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHH-H---
T ss_pred             CeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCccc-C---
Confidence            35667789999999999999999872  22 222 2445677888888776652       23569999844321 1   


Q ss_pred             CcCCCcchHHHHHHHHHHHHHH
Q 023375          165 KTVLPALAQVAERQGKYLFSLL  186 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i  186 (283)
                      +-.-|.+...|.+.|+++..-+
T Consensus       462 G~~~~~Ls~~a~R~~~I~~~l~  483 (501)
T 4b63_A          462 GLSDSLLSVLAVRGGEMVQSIF  483 (501)
T ss_dssp             CTTTTSSTTHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHHh
Confidence            1122555567888787664433

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.90  E-value=8e-09  Score=89.76  Aligned_cols=92  Identities=18%  Similarity=0.281  Sum_probs=74.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCCCC------------CCCC-----CHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEI------------LSSF-----DDRLRHYATT   76 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~~~------------l~~~-----~~~~~~~~~~   76 (283)
                      .+|+|||||++|+.+|..|++.+              . +|++||++.+            .|.+     .+++.+++.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   67 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGG--------------VKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQE   67 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHH
T ss_pred             ceEEEECccHHHHHHHHHHHHCC--------------CCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHH
Confidence            47999999999999999999876              7 9999997521            1222     2567788888


Q ss_pred             HHHhCCCEEEeCceEEEe--CC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           77 QLSKSGVRLVRGIVKDVD--SQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        77 ~l~~~gV~v~~~~V~~v~--~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+++.|++++..+|.+++  .+  .|.+.+|+++.+|.+|+|+|..|.
T Consensus        68 ~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~  115 (311)
T 2q0l_A           68 QCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK  115 (311)
T ss_dssp             HHHTTSCEEECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             HHHHcCCEEEEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC
Confidence            888999999887787775  34  466778889999999999998765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.90  E-value=3.4e-09  Score=92.71  Aligned_cols=89  Identities=22%  Similarity=0.273  Sum_probs=73.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CC---------------CCC----CHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL---------------SSF----DDRLRHY   73 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l---------------~~~----~~~~~~~   73 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|++||+.. +.               +.+    ..++..+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQ--------------ASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINN   72 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHH
Confidence            468999999999999999999876              8999999863 21               111    3678888


Q ss_pred             HHHHHHhCCCEEEeC-ceEEEeCC-----eEEEcCCcEEEeeEEEEcCCC
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      +.+.+++.|++++.+ +|++++.+     .|.+.+|+ +.+|.||+|+|.
T Consensus        73 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           73 LKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             HHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             HHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence            889899999999988 89888643     46677775 999999999999

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.88  E-value=5.3e-08  Score=86.47  Aligned_cols=92  Identities=20%  Similarity=0.246  Sum_probs=74.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------C--------CCC----CHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------L--------SSF----DDRLRHY   73 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l--------~~~----~~~~~~~   73 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||+. .+       .        +.+    ..++.++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNN--------------ISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVES   79 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHH
Confidence            468999999999999999999876              899999986 32       1        111    2567788


Q ss_pred             HHHHHHhCCCEEEeC-ceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCC
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      +.+.+++.+++++.+ +|++++.+     .|.+.+|+++.+|.+|+|+|..+
T Consensus        80 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           80 LWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             HHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence            888888999999988 89888642     47777888999999999999943

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.87  E-value=7.5e-09  Score=94.04  Aligned_cols=94  Identities=21%  Similarity=0.284  Sum_probs=73.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHH-------------HHHHHHHhC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH-------------YATTQLSKS   81 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~-------------~~~~~l~~~   81 (283)
                      ++|+|||||++|+.+|..|++.+.            ..+|++|++...++...+.+..             ...+.+++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~------------~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~   70 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGF------------EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEA   70 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC------------CSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHT
T ss_pred             CCEEEEcccHHHHHHHHHHHccCc------------CCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHC
Confidence            489999999999999999998762            1569999987443322111111             123456788


Q ss_pred             CCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ||+++.+ +|+.++.+  .|.+.+|+++.+|.+|+|||.+|.
T Consensus        71 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~  112 (410)
T 3ef6_A           71 RIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRAR  112 (410)
T ss_dssp             TCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             CCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCccc
Confidence            9999999 89999865  788899999999999999998876

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.87  E-value=4.5e-09  Score=96.18  Aligned_cols=94  Identities=26%  Similarity=0.370  Sum_probs=72.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCC--------------HHHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD--------------DRLRHYATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~--------------~~~~~~~~~~l~~   80 (283)
                      .+|+|||||++|+.+|..|++.+.            +.+|++|++...+|...              ..+.....+.+++
T Consensus         5 ~~vvIIGgG~aGl~aA~~l~~~g~------------~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   72 (431)
T 1q1r_A            5 DNVVIVGTGLAGVEVAFGLRASGW------------EGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAA   72 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC------------CSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHH
T ss_pred             CcEEEEcCHHHHHHHHHHHHccCc------------CCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHh
Confidence            689999999999999999998761            14899999864332111              1111112356778


Q ss_pred             CCCEEEeC-ceEEEeC--CeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~--~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .||+++.+ +|+.++.  ..|.+++|+++.+|.+|+|+|.+|.
T Consensus        73 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~  115 (431)
T 1q1r_A           73 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPR  115 (431)
T ss_dssp             TTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             CCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCcc
Confidence            99999998 7999986  4688888989999999999999886

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.85  E-value=1.2e-08  Score=89.05  Aligned_cols=102  Identities=16%  Similarity=0.185  Sum_probs=73.4

Q ss_pred             CCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC------------CCCC----C
Q 023375            4 AGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF----D   67 (283)
Q Consensus         4 ~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~------------l~~~----~   67 (283)
                      |....+.-....+|+|||||++|+.+|..|++.+              .+|++||+..+            .|.+    .
T Consensus         6 ~~~~~~~m~~~~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~   71 (319)
T 3cty_A            6 HAVSSEEKERDFDVVIVGAGAAGFSAAVYAARSG--------------FSVAILDKAVAGGLTAEAPLVENYLGFKSIVG   71 (319)
T ss_dssp             --------CCEEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTGGGGGCSCBCCBTTBSSBCH
T ss_pred             cccccccccCCCcEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCccccccchhhhcCCCcccCH
Confidence            4444443334468999999999999999999876              89999998522            1221    2


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEe--CC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           68 DRLRHYATTQLSKSGVRLVRGIVKDVD--SQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~~V~~v~--~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .++..++.+.+++.|++++.++|++++  .+  .|.+ +++++.+|.+|+|+|..|.
T Consensus        72 ~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           72 SELAKLFADHAANYAKIREGVEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK  127 (319)
T ss_dssp             HHHHHHHHHHHHTTSEEEETCCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc
Confidence            466777788888899999887787775  34  3544 6678999999999998765

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.84  E-value=1.7e-09  Score=98.12  Aligned_cols=95  Identities=17%  Similarity=0.268  Sum_probs=72.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C--CCC---------CCHHHHHHHHHHHHhCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I--LSS---------FDDRLRHYATTQLSKSG   82 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~--l~~---------~~~~~~~~~~~~l~~~g   82 (283)
                      ++|+|||||++|+++|..|++...           .+.+|+|||++. +  .|.         ..+++...+.+.+++.|
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~-----------~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   70 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVG-----------SKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKG   70 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHG-----------GGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCC-----------CCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCC
Confidence            589999999999999999998210           118999999863 2  111         12234445667778899


Q ss_pred             CEEEeCceEEEeCC--eEEEcCCc----EEEeeEEEEcCCCCCc
Q 023375           83 VRLVRGIVKDVDSQ--KLILNDGT----EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        83 V~v~~~~V~~v~~~--~v~~~~g~----~i~~d~vi~a~G~~~~  120 (283)
                      |+++.++|++++.+  .|++++++    ++.+|.||+|+|.+|+
T Consensus        71 v~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~  114 (409)
T 3h8l_A           71 IQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA  114 (409)
T ss_dssp             CEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC
T ss_pred             eEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC
Confidence            99998899999865  78887775    3999999999999876

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.84  E-value=4.3e-08  Score=87.88  Aligned_cols=93  Identities=24%  Similarity=0.255  Sum_probs=75.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~---------------------------   65 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|+|+. ...+.                           
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G--------------~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~   76 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNG--------------WDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGS   76 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhC
Confidence            468999999999999999999887              899999986 32110                           


Q ss_pred             -----------------C-----------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-eEEEcCCcEEEeeEEEEcC
Q 023375           66 -----------------F-----------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-KLILNDGTEVPYGLLVWST  115 (283)
Q Consensus        66 -----------------~-----------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-~v~~~~g~~i~~d~vi~a~  115 (283)
                                       +           ...+.+.+.+.+.+.||+++.+ +|++++.+ .|++.+|+++.+|.||.|+
T Consensus        77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~Ad  156 (379)
T 3alj_A           77 HTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGAD  156 (379)
T ss_dssp             BCCSCEEEEETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECC
T ss_pred             CCccceEEEeCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECC
Confidence                             0           0345667777888889999999 89888644 6778889899999999999


Q ss_pred             CCCCc
Q 023375          116 GVGPS  120 (283)
Q Consensus       116 G~~~~  120 (283)
                      |..+.
T Consensus       157 G~~s~  161 (379)
T 3alj_A          157 GVGSK  161 (379)
T ss_dssp             CTTCH
T ss_pred             CccHH
Confidence            98775

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.84  E-value=1.3e-08  Score=88.32  Aligned_cols=92  Identities=16%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CCC--------CC----CCHHHHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL--------SS----FDDRLRHYATTQLS   79 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~l--------~~----~~~~~~~~~~~~l~   79 (283)
                      .+|+|||||++|+.+|..|++.+              .+|++|++.   ...        +.    ..+.+..++.+.++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKG--------------IRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVD   67 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHH
Confidence            37999999999999999999876              889999752   111        11    12467788888899


Q ss_pred             hCCCEEEeC-ceEEEeCC-------eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~-------~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.|++++.+ +|++++.+       .|.+++|+++.+|.+|+|+|..|.
T Consensus        68 ~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~  116 (310)
T 1fl2_A           68 EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR  116 (310)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             HcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence            999999999 89999642       467778889999999999998765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.81  E-value=2.5e-08  Score=92.94  Aligned_cols=94  Identities=21%  Similarity=0.310  Sum_probs=74.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-----CC-------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-----FD-------------------   67 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-----~~-------------------   67 (283)
                      ...+|+|||||++|+++|..|++.+              .+|+|||+. .+...     .+                   
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G--------------~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~  156 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLG--------------ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFC  156 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTT
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCC--------------CeEEEEEeccccCCCCcccCChhHHHHHHHcCCcccccccc
Confidence            4578999999999999999999887              899999986 33110     01                   


Q ss_pred             ---------HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-------eEEE--c-CC--cEEEeeEEEEcCCCCCc
Q 023375           68 ---------DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-------KLIL--N-DG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        68 ---------~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-------~v~~--~-~g--~~i~~d~vi~a~G~~~~  120 (283)
                               ..+.+.+.+.+++.||+++.+ +|++++.+       .|++  . +|  +++.+|.||.|+|..+.
T Consensus       157 ~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          157 TGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             CTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             ccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence                     456667778888899999999 89998742       4566  3 55  47999999999999876

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.81  E-value=2e-08  Score=88.39  Aligned_cols=93  Identities=18%  Similarity=0.238  Sum_probs=75.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC------------CCCC-----CHHHHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATT   76 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~------------l~~~-----~~~~~~~~~~   76 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|++||+..+            .|.+     .+++..++.+
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   79 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQ--------------LAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMRE   79 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTT--------------CCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHH
Confidence            468999999999999999999876              88999986321            1222     2567788888


Q ss_pred             HHHhCCCEEEeCceEEEeCC---eE-EEcCCcEEEeeEEEEcCCCCCc
Q 023375           77 QLSKSGVRLVRGIVKDVDSQ---KL-ILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        77 ~l~~~gV~v~~~~V~~v~~~---~v-~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+++.|++++.+.|.+++.+   .| .+++++++.+|.+|+|+|..|.
T Consensus        80 ~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~  127 (335)
T 2a87_A           80 QALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR  127 (335)
T ss_dssp             HHHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             HHHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc
Confidence            88899999998888888752   46 6778889999999999998765

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.81  E-value=1.2e-08  Score=92.83  Aligned_cols=96  Identities=24%  Similarity=0.348  Sum_probs=74.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCC--------------CHHHHHHHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF--------------DDRLRHYATTQL   78 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~--------------~~~~~~~~~~~l   78 (283)
                      ...+|+|||||++|+.+|..|++.+..            .+|++|++...+|..              ...+.....+.+
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~------------~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~   75 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFE------------GRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFW   75 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC------------SCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcC------------CCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHH
Confidence            346899999999999999999987621            459999986322211              122223345667


Q ss_pred             HhCCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           79 SKSGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.||+++.+ +|+.++.+  .|.+.+|+++.+|.+|+|||.+|.
T Consensus        76 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~  120 (415)
T 3lxd_A           76 EDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPR  120 (415)
T ss_dssp             HHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECC
T ss_pred             HHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccC
Confidence            8899999999 89999875  688889999999999999998876

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.80  E-value=3.2e-08  Score=85.95  Aligned_cols=92  Identities=23%  Similarity=0.316  Sum_probs=73.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC-----------------CCCC-----CHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-----------------LSSF-----DDRLRH   72 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~-----------------l~~~-----~~~~~~   72 (283)
                      ..|+||||||+|+.+|..+++.+              .+|++||+...                 .|.+     ++++..
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g--------------~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~   70 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSS--------------LKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMM   70 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHH
Confidence            47999999999999999999887              89999997421                 0122     256778


Q ss_pred             HHHHHHHhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           73 YATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        73 ~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ...+.+++.++++....+..+..+    .+.+.++.++.+|.+|+|||.+|.
T Consensus        71 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~  122 (314)
T 4a5l_A           71 NMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAK  122 (314)
T ss_dssp             HHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEEC
T ss_pred             HHHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEccccccc
Confidence            888889999999988866655443    466678899999999999999875

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.80  E-value=8e-09  Score=93.60  Aligned_cols=94  Identities=22%  Similarity=0.354  Sum_probs=72.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCC--------------CHHHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF--------------DDRLRHYATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~--------------~~~~~~~~~~~l~~   80 (283)
                      ++|+|||||++|+.+|..|++.+.            ..+|++|++...+|..              ...+.....+.+.+
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~------------~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~   69 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKY------------PGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQD   69 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC------------CSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHH
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCc------------CCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHh
Confidence            589999999999999999998762            1489999986432211              11122234566778


Q ss_pred             CCCEEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+|+++..+|++++.+  .|.+.+|+++.+|.+|+|||.+|.
T Consensus        70 ~~i~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~  111 (404)
T 3fg2_P           70 QAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNR  111 (404)
T ss_dssp             TTEEEECCCEEEEETTTTEEEESSSCEEECSEEEECCCEEEC
T ss_pred             CCCEEEEEEEEEEECCCCEEEECCCCEEECCEEEEeeCCCcc
Confidence            9999998778888865  688899999999999999998775

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.80  E-value=2.2e-08  Score=86.98  Aligned_cols=92  Identities=18%  Similarity=0.293  Sum_probs=68.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC-------CC-------CCHHHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------SS-------FDDRLRHYATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l-------~~-------~~~~~~~~~~~~l~~   80 (283)
                      -.|+||||||+|+.+|..+++.+              .+|+|||++...       |.       .++++.+...+.+.+
T Consensus         7 yDVvIIGaGpAGlsAA~~lar~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (304)
T 4fk1_A            7 IDCAVIGAGPAGLNASLVLGRAR--------------KQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMK   72 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTT
T ss_pred             cCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999877              899999975321       11       234566666666666


Q ss_pred             CC-CEEEeCceEEEeC---C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SG-VRLVRGIVKDVDS---Q--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~g-V~v~~~~V~~v~~---~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+ +.++...+..+..   +  .+.+.+|+++.+|.||+|||.+|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~  118 (304)
T 4fk1_A           73 YPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE  118 (304)
T ss_dssp             STTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE
T ss_pred             cCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc
Confidence            65 5556555555432   1  577889999999999999999876

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.79  E-value=5.3e-08  Score=86.50  Aligned_cols=92  Identities=15%  Similarity=0.295  Sum_probs=71.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCCCC--------------CCC--------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEI--------------LSS--------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~~~--------------l~~--------------   65 (283)
                      .+|+|||||++|+.+|..|++.+              . +|+|||+..+              .+.              
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g--------------~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   70 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFG--------------ITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAI   70 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcC--------------CCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhc
Confidence            57999999999999999999876              6 8999997530              000              


Q ss_pred             --------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch
Q 023375           66 --------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        66 --------------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                                    . ...+..++.+.+++.|++++.+ +|++++.+    .|.+.++ ++.+|.||+|+|..+.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~p  145 (369)
T 3d1c_A           71 SMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNFP  145 (369)
T ss_dssp             STTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTSB
T ss_pred             cccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCcc
Confidence                          0 1345666777788899999998 79888754    3555565 69999999999997653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.78  E-value=2e-08  Score=94.36  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=78.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------------------------------   62 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------------------------------   62 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|++ .+                               
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G--------------~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~  173 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMG--------------FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGT  173 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTT--------------CCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEEccCcccccccchhcccccccccccccceeccCCccc
Confidence            68999999999999999999877              889999976 21                               


Q ss_pred             -----C------C--------------------------CC----CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----
Q 023375           63 -----L------S--------------------------SF----DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----   96 (283)
Q Consensus        63 -----l------~--------------------------~~----~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----   96 (283)
                           +      +                          ..    ...+.+.+.+.+++.|++++.+ +|+++..+    
T Consensus       174 ~sdgkl~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v  253 (549)
T 3nlc_A          174 FSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQI  253 (549)
T ss_dssp             TSCCCCCCCSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBE
T ss_pred             ccCCceEEEeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEE
Confidence                 0      0                          00    0445566777788899999999 89988532    


Q ss_pred             -eEEEcCCcEEEeeEEEEcCCCCCch---hhhccCCCC
Q 023375           97 -KLILNDGTEVPYGLLVWSTGVGPST---LVKSLDLPK  130 (283)
Q Consensus        97 -~v~~~~g~~i~~d~vi~a~G~~~~~---~~~~~~l~~  130 (283)
                       .|++.+|+++.+|.||+|+|..+.+   .+...+++.
T Consensus       254 ~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~~  291 (549)
T 3nlc_A          254 TGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVYM  291 (549)
T ss_dssp             EEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCCC
T ss_pred             EEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCCc
Confidence             3778889999999999999999863   344445543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.78  E-value=1.5e-07  Score=83.99  Aligned_cols=90  Identities=21%  Similarity=0.322  Sum_probs=63.5

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-----------------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-----------------------------   65 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-----------------------------   65 (283)
                      .|+||||||+|+.+|..|++.+              .+|+|+|+. .+-..                             
T Consensus         6 DViIVGaGpaGl~~A~~La~~G--------------~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~   71 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYG--------------LKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVK   71 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccc
Confidence            6999999999999999999987              777777763 22000                             


Q ss_pred             ---------------------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE---EE-cCC--cEEEe
Q 023375           66 ---------------------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL---IL-NDG--TEVPY  108 (283)
Q Consensus        66 ---------------------------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v---~~-~~g--~~i~~  108 (283)
                                                 + ...+...+.+...+.|++++.+ +++++..  +.+   .. .++  .++.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a  151 (397)
T 3oz2_A           72 GARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRA  151 (397)
T ss_dssp             EEEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             eEEEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEE
Confidence                                       0 1234555666677889999998 7876643  332   22 233  36899


Q ss_pred             eEEEEcCCCCC
Q 023375          109 GLLVWSTGVGP  119 (283)
Q Consensus       109 d~vi~a~G~~~  119 (283)
                      |.||-|.|...
T Consensus       152 ~~vIgAdG~~S  162 (397)
T 3oz2_A          152 KMVIAADGFES  162 (397)
T ss_dssp             EEEEECCCTTC
T ss_pred             eEEEeCCcccc
Confidence            99999999754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.77  E-value=1.5e-08  Score=91.97  Aligned_cols=96  Identities=26%  Similarity=0.364  Sum_probs=71.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCC----CCHHHH-HHHHH-----HHHhCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----FDDRLR-HYATT-----QLSKSG   82 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~----~~~~~~-~~~~~-----~l~~~g   82 (283)
                      ...+|+|||||++|+.+|..|++.+.            ..+|++|++...++.    ++..+. ....+     .+++.|
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~------------~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGY------------QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPE   73 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC------------CSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCS
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCC------------CCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCC
Confidence            34689999999999999999998762            147999999743332    222111 10000     355779


Q ss_pred             CEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           83 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        83 V~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |+++.+ +|+.++.+  .|++++|+++.+|.+|+|||.+|.
T Consensus        74 v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~  114 (408)
T 2gqw_A           74 VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR  114 (408)
T ss_dssp             CEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             CEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCC
Confidence            999999 69999864  688888989999999999999876

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.75  E-value=5.2e-08  Score=84.86  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=73.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC------------CCCC-----CHHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQ   77 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~------------l~~~-----~~~~~~~~~~~   77 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+++|+..+            .|.+     .+++.+++.+.
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEH   71 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--------------CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHH
Confidence            58999999999999999999876              88999986321            1222     25677788888


Q ss_pred             HHhCCCEEEeCceEEEeCC--eEE-EcCCcEEEeeEEEEcCCCCCc
Q 023375           78 LSKSGVRLVRGIVKDVDSQ--KLI-LNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        78 l~~~gV~v~~~~V~~v~~~--~v~-~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +++.|++++.++++.++.+  .+. +.+++++.+|.+|+|+|..|.
T Consensus        72 ~~~~~~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~  117 (320)
T 1trb_A           72 ATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (320)
T ss_dssp             HHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             HHHCCCEEEEeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcC
Confidence            8999999998888888753  333 567889999999999998765

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.75  E-value=9e-08  Score=90.21  Aligned_cols=94  Identities=19%  Similarity=0.227  Sum_probs=74.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CC-------------C----
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SS-------------F----   66 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~-------------~----   66 (283)
                      ...+|+|||||++|+.+|..|++.+              .+|+|||+. .+.        |.             +    
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G--------------~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~   85 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQG--------------LTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPEL   85 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHH
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCccccCCCCCceeCCCchhccccccccc
Confidence            3468999999999999999999866              899999984 221        00             1    


Q ss_pred             ------------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEe--CC----eEEEcCCcEEEeeEEEEcCC--CCCc
Q 023375           67 ------------DDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTG--VGPS  120 (283)
Q Consensus        67 ------------~~~~~~~~~~~l~~~gV--~v~~~-~V~~v~--~~----~v~~~~g~~i~~d~vi~a~G--~~~~  120 (283)
                                  .+++.+++.+..++.|+  +++.+ +|++++  ++    .|++++|+++.||.||+|+|  ..|.
T Consensus        86 ~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~  162 (549)
T 4ap3_A           86 EQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN  162 (549)
T ss_dssp             HHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC
T ss_pred             ccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence                        24677888888899998  78888 888874  34    68888999999999999999  4444

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.73  E-value=3.3e-08  Score=86.63  Aligned_cols=92  Identities=18%  Similarity=0.218  Sum_probs=73.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC----C-CC------------CCCC-----CHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----N-EI------------LSSF-----DDRLR   71 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~----~-~~------------l~~~-----~~~~~   71 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|++||+    . .+            .|.+     ..++.
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g--------------~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   73 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAE--------------LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELT   73 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHH
Confidence            358999999999999999999876              89999998    2 21            1222     24677


Q ss_pred             HHHHHHHHhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           72 HYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+.+.+++.|++++.++|.+++.+    .|++ +++++.+|.+|+|+|..|.
T Consensus        74 ~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~  125 (333)
T 1vdc_A           74 DKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK  125 (333)
T ss_dssp             HHHHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence            7788888899999998888888653    3555 7788999999999999865

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.72  E-value=3e-08  Score=91.10  Aligned_cols=95  Identities=26%  Similarity=0.437  Sum_probs=67.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC-------CCC------CHHHHHHHHHHH-H
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------SSF------DDRLRHYATTQL-S   79 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l-------~~~------~~~~~~~~~~~l-~   79 (283)
                      .++|+|||||++|+.+|..|++...            +.+|++||+....       |.+      ...+..+..+.+ +
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~------------~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~   70 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKP------------EWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIK   70 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT------------TSEEEEECSSSCCC------------------------CTHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCc------------CCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHH
Confidence            3689999999999999999998731            2899999987422       111      111222222334 6


Q ss_pred             hCCCEEEeC-ceEEEeCCe--EEEcCC-cEEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQK--LILNDG-TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~~--v~~~~g-~~i~~d~vi~a~G~~~~  120 (283)
                      +.||+++.+ +|++++.+.  +.+.++ .++.+|.+|+|||.+|.
T Consensus        71 ~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~  115 (449)
T 3kd9_A           71 KRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ  115 (449)
T ss_dssp             HTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC
T ss_pred             hcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC
Confidence            789999999 899998764  555566 47999999999998776

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.71  E-value=5.5e-08  Score=91.10  Aligned_cols=94  Identities=15%  Similarity=0.209  Sum_probs=76.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CCC-----------C-CCCHHHHHHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL-----------S-SFDDRLRHYATTQ   77 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~l-----------~-~~~~~~~~~~~~~   77 (283)
                      ...+|+|||||++|+.+|..|++.+              .+|++++..   ...           + ...+++..++.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G--------------~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  276 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKG--------------IRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAH  276 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHH
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCC--------------CeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999876              889999752   111           0 1235778888888


Q ss_pred             HHhCCCEEEeC-ceEEEeCC-------eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           78 LSKSGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        78 l~~~gV~v~~~-~V~~v~~~-------~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +++.||+++.+ +|++++.+       .|.+++|+++.+|.+|+|+|..|.
T Consensus       277 ~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          277 VSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             HHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             HHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            99999999999 89999642       477788889999999999998765

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.70  E-value=7.7e-08  Score=87.64  Aligned_cols=91  Identities=19%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC---------------------------CC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------------------------SF   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~---------------------------~~   66 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|+. .+..                           .+
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G--------------~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~   93 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRG--------------RRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHF   93 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHH
Confidence            58999999999999999999887              899999986 3210                           00


Q ss_pred             -------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEEcCCc
Q 023375           67 -------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGT  104 (283)
Q Consensus        67 -------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~--~v~~~~g~  104 (283)
                                                           ...+.+.+.+.+++.||+++++ +|+++..  +  .|.+.+| 
T Consensus        94 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-  172 (417)
T 3v76_A           94 CKSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-  172 (417)
T ss_dssp             THHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-
T ss_pred             HHHHHHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-
Confidence                                                 1245666777788889999999 8988853  3  3556666 


Q ss_pred             EEEeeEEEEcCCCCCc
Q 023375          105 EVPYGLLVWSTGVGPS  120 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~~  120 (283)
                      ++.+|.||+|+|..+.
T Consensus       173 ~i~ad~VIlAtG~~S~  188 (417)
T 3v76_A          173 TVDAASLVVASGGKSI  188 (417)
T ss_dssp             EEEESEEEECCCCSSC
T ss_pred             EEEeeEEEECCCCccC
Confidence            8999999999999873

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.69  E-value=5.3e-08  Score=87.16  Aligned_cols=92  Identities=32%  Similarity=0.472  Sum_probs=68.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCC-------------HHHHHHHHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD-------------DRLRHYATTQLS   79 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~-------------~~~~~~~~~~l~   79 (283)
                      ...+++|||||+.|+.+|..|++.              + +|+|||++...+...             +++.....+.++
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~--------------g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~   71 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQT--------------Y-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYR   71 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTT--------------S-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHH
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhc--------------C-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHH
Confidence            346899999999999999999643              3 899999874322111             111122345677


Q ss_pred             hCCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.||+++.+ +|+.++.+  .|+ .+|+++.+|.+|+|||.+|.
T Consensus        72 ~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~  114 (367)
T 1xhc_A           72 KRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAR  114 (367)
T ss_dssp             HHTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEEC
T ss_pred             hCCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCC
Confidence            889999999 79999875  465 67889999999999999876

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.69  E-value=1.2e-07  Score=82.49  Aligned_cols=92  Identities=21%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC------------CCC----CHHHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SSF----DDRLRHYATTQL   78 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l------------~~~----~~~~~~~~~~~l   78 (283)
                      -.|+||||||+|+.+|..|++.+              .+|+|||++.+.            |.+    .+++........
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g--------------~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~   72 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRAN--------------LKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHA   72 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHH
Confidence            36999999999999999999887              899999975321            211    256777777788


Q ss_pred             HhCCCEEEeC-ceEEEeC--CeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           79 SKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~gV~v~~~-~V~~v~~--~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.++.+..+ .+.....  ..+...+++++.+|.+|+|||.+|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~  117 (312)
T 4gcm_A           73 KKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYK  117 (312)
T ss_dssp             HHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEEC
T ss_pred             hhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccC
Confidence            8888888877 4443333  3566678889999999999999876

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.68  E-value=6.4e-08  Score=89.29  Aligned_cols=92  Identities=22%  Similarity=0.407  Sum_probs=70.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC-----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~-----------------------------   64 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||++.+..                             
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~   69 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFG--------------KRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGF   69 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCC--------------CcEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhc
Confidence            358999999999999999999876              8999999874310                             


Q ss_pred             -------CCC-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           65 -------SFD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 -------~~~-~-----------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                             ..+ +           .+...+.+.+++.||+++.+++..++...|.+ +|+++.+|.+|+|||.+|.
T Consensus        70 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~  143 (463)
T 2r9z_A           70 GVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPI  143 (463)
T ss_dssp             TBCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEEC
T ss_pred             CcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCC
Confidence                   001 0           11122344557789999999777788888888 7788999999999998876

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.68  E-value=1.5e-07  Score=85.28  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=70.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-----------------CC-----------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-----------------SS-----------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-----------------~~-----------   65 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|++ .+.                 ..           
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G--------------~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~   70 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLG--------------KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHF   70 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCC--------------CCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHH
Confidence            57999999999999999999887              889999876 330                 00           


Q ss_pred             ------------------------------------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe-C-----Ce--EEE
Q 023375           66 ------------------------------------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD-S-----QK--LIL  100 (283)
Q Consensus        66 ------------------------------------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~-~-----~~--v~~  100 (283)
                                                          ....+.+.+.+.+++.||+++++ +|+++. .     +.  |.+
T Consensus        71 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~  150 (401)
T 2gqf_A           71 VKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV  150 (401)
T ss_dssp             THHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE
T ss_pred             HHHHHHhCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEE
Confidence                                                12345566777788899999999 898886 3     32  445


Q ss_pred             cCCcEEEeeEEEEcCCCCCc
Q 023375          101 NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       101 ~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .++ ++.+|.||+|+|..+.
T Consensus       151 ~~g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          151 NST-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             TTE-EEEESEEEECCCCSSC
T ss_pred             CCC-EEECCEEEECCCCccC
Confidence            555 7999999999999984

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.67  E-value=1.6e-07  Score=86.63  Aligned_cols=92  Identities=20%  Similarity=0.366  Sum_probs=69.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHH---hhhhHHHhhcCCCCCccE---EEEEeCC-CCC------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSD---FIMRDVRQRYSHVKDYIH---VTLIEAN-EIL------------------------   63 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~---~~~~~~~~~~~~~~~~~~---V~li~~~-~~l------------------------   63 (283)
                      ++|+|||||++|+.+|..|++   .+              .+   |++||+. .+.                        
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--------------~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~   68 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKG--------------AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYR   68 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTT--------------CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcC--------------CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCcccc
Confidence            589999999999999999998   54              66   9999986 321                        


Q ss_pred             -------------CCC---------------CHHHHHHHHHHHHhCCCE--EEeC-ceEEEe--CC----eEEEcC---C
Q 023375           64 -------------SSF---------------DDRLRHYATTQLSKSGVR--LVRG-IVKDVD--SQ----KLILND---G  103 (283)
Q Consensus        64 -------------~~~---------------~~~~~~~~~~~l~~~gV~--v~~~-~V~~v~--~~----~v~~~~---g  103 (283)
                                   +.+               ...+.+++.+.+++.|++  ++.+ +|++++  ++    .|++.+   |
T Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g  148 (464)
T 2xve_A           69 YLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTD  148 (464)
T ss_dssp             TCBCSSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTT
T ss_pred             chhhcCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCC
Confidence                         000               145667777888888998  8888 788885  33    566654   4


Q ss_pred             --cEEEeeEEEEcCC--CCCc
Q 023375          104 --TEVPYGLLVWSTG--VGPS  120 (283)
Q Consensus       104 --~~i~~d~vi~a~G--~~~~  120 (283)
                        +++.+|.||+|+|  ..|+
T Consensus       149 ~~~~~~~d~VVvAtG~~s~p~  169 (464)
T 2xve_A          149 TIYSEEFDYVVCCTGHFSTPY  169 (464)
T ss_dssp             EEEEEEESEEEECCCSSSSBC
T ss_pred             ceEEEEcCEEEECCCCCCCCc
Confidence              5789999999999  5665

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.67  E-value=2e-07  Score=87.60  Aligned_cols=90  Identities=13%  Similarity=0.177  Sum_probs=72.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHH-HhhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CCC-----------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELS-DFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SSF-----------------   66 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~-~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~~-----------------   66 (283)
                      ..+|+|||||++|+.+|..|+ +.+              .+|+|||+. .+.        |..                 
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G--------------~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~   73 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELG--------------LTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDL   73 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC--------------CCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCC--------------CCEEEEECCCCCCCcccccCCCCceecCCcceeeecccccc
Confidence            358999999999999999999 665              899999985 321        111                 


Q ss_pred             ------------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEe--CC----eEEEcCCcEEEeeEEEEcCCC
Q 023375           67 ------------DDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        67 ------------~~~~~~~~~~~l~~~gV--~v~~~-~V~~v~--~~----~v~~~~g~~i~~d~vi~a~G~  117 (283)
                                  .+++.+++.+..++.|+  +++.+ +|++++  ++    .|++++|+++.+|.||+|+|.
T Consensus        74 ~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A           74 LQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL  145 (540)
T ss_dssp             HHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             ccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence                        24677888888889998  78888 788875  33    578889999999999999995

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.67  E-value=4.3e-08  Score=90.09  Aligned_cols=94  Identities=16%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC----CCC----------HHHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD----------DRLRHYATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~----~~~----------~~~~~~~~~~l~~   80 (283)
                      ++|+|||||++|+.+|..|++..+            +.+|++||++...+    .+.          ..+.....+.+.+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~------------g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYP------------QAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRR   70 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS------------SSEEEEECSSSCCSSCCC----------------CCCCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCc------------CCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHH
Confidence            589999999999999999998731            28999999873221    111          1111113466788


Q ss_pred             CCCEEEeC-ceEEEeCC--eEEEc---CCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQ--KLILN---DGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~--~v~~~---~g~~i~~d~vi~a~G~~~~  120 (283)
                      .|++++.+ +|++++.+  .+.+.   +++++.+|.+|+|||.+|.
T Consensus        71 ~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~  116 (452)
T 3oc4_A           71 QKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQF  116 (452)
T ss_dssp             TTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBC
T ss_pred             CCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccC
Confidence            99999988 89999765  45552   5568999999999999886

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.66  E-value=1e-07  Score=87.59  Aligned_cols=92  Identities=25%  Similarity=0.454  Sum_probs=70.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCC----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~----------------------------   65 (283)
                      ..+|+|||||+.|+.+|..|++.+              .+|+|||++.+...                            
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~   69 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYG--------------QKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPD   69 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHh
Confidence            358999999999999999999876              89999998743110                            


Q ss_pred             ---------CC-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           66 ---------FD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        66 ---------~~-~-----------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                               ++ +           .+.......+++.||+++.+++..++...|.+ +|+++.+|.+|+|||.+|.
T Consensus        70 ~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~  144 (450)
T 1ges_A           70 YGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPS  144 (450)
T ss_dssp             GTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEEC
T ss_pred             cCccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE-CCEEEEeCEEEECCCCCCC
Confidence                     00 0           11122234457789999999777788888888 7788999999999998876

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.64  E-value=1.5e-07  Score=86.71  Aligned_cols=92  Identities=22%  Similarity=0.350  Sum_probs=69.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------C--------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S--------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~--------------------   64 (283)
                      ..+|+|||||+.|+.+|..|++.+              .+|+|||++.+.         |                    
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g--------------~~V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~   70 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLG--------------IPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEP   70 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--------------CEEEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccc
Confidence            368999999999999999999876              899999985431         0                    


Q ss_pred             ---CC-------C-HHHH-----------HHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           65 ---SF-------D-DRLR-----------HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 ---~~-------~-~~~~-----------~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                         .+       + +++.           ....+.+++.||+++.++...+++..|.+++ +++.+|.+|+|||.+|.
T Consensus        71 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~lviATGs~p~  147 (458)
T 1lvl_A           71 SPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG-QRIQCEHLLLATGSSSV  147 (458)
T ss_dssp             CTTCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT-EEEECSEEEECCCEEEC
T ss_pred             cccCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee-EEEEeCEEEEeCCCCCC
Confidence               00       1 1111           1234567788999999965557777888876 78999999999999886

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.64  E-value=1.1e-07  Score=88.17  Aligned_cols=92  Identities=23%  Similarity=0.279  Sum_probs=73.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------------------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||++.+..                              
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G--------------~~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g   92 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALG--------------KRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFG   92 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCc--------------CEEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCC
Confidence            48999999999999999999987              8999999853211                              


Q ss_pred             ------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEc-CCcEEEeeEEEEcCCCCCc
Q 023375           65 ------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 ------~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~-~g~~i~~d~vi~a~G~~~~  120 (283)
                            .++            ..+...+...+++.+|+++.+.+..+++..+.+. +++++.+|.+|+|+|..|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~  167 (484)
T 3o0h_A           93 WKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIV  167 (484)
T ss_dssp             BCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEEC
T ss_pred             cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcc
Confidence                  000            1233345566778899999998888888888887 7889999999999998776

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.63  E-value=3.2e-08  Score=92.13  Aligned_cols=96  Identities=21%  Similarity=0.341  Sum_probs=69.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHH--------H---------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA--------T---------   75 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~--------~---------   75 (283)
                      ...+|+|||||++|+.+|..|.+...            +.+|+||++...++...+.+++.+        .         
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~------------g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~   77 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDP------------GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWN   77 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHST------------TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCC------------CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccc
Confidence            34689999999999999999987631            289999998743321111000000        0         


Q ss_pred             -----------H------H---HHhCCCEEEeC-ceEEEeC--CeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           76 -----------T------Q---LSKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        76 -----------~------~---l~~~gV~v~~~-~V~~v~~--~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                 +      .   +.+.||+++.+ +|++++.  ..|++++|+++.||.+|+|||.+|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~  145 (493)
T 1m6i_A           78 GKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPR  145 (493)
T ss_dssp             SCEEESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             cccccccccchHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCC
Confidence                       0      0   12468999998 8998874  4788999999999999999999886

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.62  E-value=9.7e-08  Score=87.47  Aligned_cols=93  Identities=15%  Similarity=0.183  Sum_probs=66.5

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCC----CCHH-----------HHHHHHHHHHh
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----FDDR-----------LRHYATTQLSK   80 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~----~~~~-----------~~~~~~~~l~~   80 (283)
                      ||+|||||+.|+.+|..|++++.            +.+|+||++++..+.    ++..           +....++.+++
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~------------~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   69 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDK------------ESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDR   69 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCS------------SSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC------------CCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHh
Confidence            69999999999999999988763            278999998632211    1000           01112345677


Q ss_pred             CCCEEEeC-ceEEEeCC--eEEEcC-----CcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQ--KLILND-----GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~--~v~~~~-----g~~i~~d~vi~a~G~~~~  120 (283)
                      .+|+++.+ +|++++.+  .+.+.+     +.++.||.+|+|||.+|+
T Consensus        70 ~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~  117 (437)
T 4eqs_A           70 KQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN  117 (437)
T ss_dssp             HCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEEC
T ss_pred             cCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccc
Confidence            89999998 89999865  344422     246899999999999876

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.62  E-value=3.1e-07  Score=86.43  Aligned_cols=93  Identities=20%  Similarity=0.244  Sum_probs=73.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--------C--------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------S--------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~--------------------   64 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||++ .+.        |                    
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g--------------~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~   74 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAG--------------MKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGII   74 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccc
Confidence            358999999999999999999866              899999986 321        1                    


Q ss_pred             ---C------CCHHHHHHHHHHHHhCCC--EEEeC-ceEEEe--CC----eEEEcCCcEEEeeEEEEcCC--CCCc
Q 023375           65 ---S------FDDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTG--VGPS  120 (283)
Q Consensus        65 ---~------~~~~~~~~~~~~l~~~gV--~v~~~-~V~~v~--~~----~v~~~~g~~i~~d~vi~a~G--~~~~  120 (283)
                         .      -.+++..++.+..++.|+  +++.+ +|++++  ++    .|++++|+++.||.||+|+|  ..|.
T Consensus        75 ~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~  150 (545)
T 3uox_A           75 PEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR  150 (545)
T ss_dssp             TTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC--
T ss_pred             cCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc
Confidence               0      125778888888888888  78888 788875  23    67888999999999999999  4554

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.62  E-value=2e-07  Score=84.01  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=71.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------------------   63 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------------------------------   63 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|+. ...                              
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G--------------~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~   72 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQG--------------HRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGG   72 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCC
Confidence            58999999999999999999876              777777764 220                              


Q ss_pred             -------------------------C-----CCCHHHHHHHHHHHHhC-CCEEEeC-ceEEEeCC------eEEEcCCcE
Q 023375           64 -------------------------S-----SFDDRLRHYATTQLSKS-GVRLVRG-IVKDVDSQ------KLILNDGTE  105 (283)
Q Consensus        64 -------------------------~-----~~~~~~~~~~~~~l~~~-gV~v~~~-~V~~v~~~------~v~~~~g~~  105 (283)
                                               +     .....+.+.+.+.+++. |++++.+ +|++++.+      .|++++|++
T Consensus        73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~  152 (399)
T 2x3n_A           73 RVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRV  152 (399)
T ss_dssp             EEECEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCE
T ss_pred             CcceeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCE
Confidence                                     0     00124556667777777 9999999 89988643      566778889


Q ss_pred             EEeeEEEEcCCCCCc
Q 023375          106 VPYGLLVWSTGVGPS  120 (283)
Q Consensus       106 i~~d~vi~a~G~~~~  120 (283)
                      +.+|.||.|+|..+.
T Consensus       153 ~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          153 LRPRVVVGADGIASY  167 (399)
T ss_dssp             EEEEEEEECCCTTCH
T ss_pred             EECCEEEECCCCChH
Confidence            999999999998775

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.61  E-value=9.2e-08  Score=88.37  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=61.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC-------CCCC-------CHHH-------HHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-------LSSF-------DDRL-------RHY   73 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~-------l~~~-------~~~~-------~~~   73 (283)
                      ++|+|||||++|+.+|..|++..+            +.+|+|||++..       +|.+       ...+       ..+
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~------------g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~   71 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDP------------EAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRD   71 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCT------------TSEEEEECCC----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCc------------CCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccC
Confidence            689999999999999999998721            289999999732       1111       1111       122


Q ss_pred             HHHHHHhCCCEEEeC-ceEEEeCC--eEEEcC---Cc--EEEeeEEEEcCCCCCc
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVDSQ--KLILND---GT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~~---g~--~i~~d~vi~a~G~~~~  120 (283)
                      .....++.|++++.+ +|++++.+  .+.+.+   |+  ++.+|.+|+|||.+|.
T Consensus        72 ~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~  126 (472)
T 3iwa_A           72 PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN  126 (472)
T ss_dssp             ---------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             HHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC
Confidence            222233579999988 89999765  566554   65  7899999999998776

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.61  E-value=7.9e-08  Score=88.71  Aligned_cols=92  Identities=20%  Similarity=0.285  Sum_probs=69.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-----------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-----------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-----------------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||+. .+..                             
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G--------------~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~   70 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAK--------------YNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANV   70 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             ceEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccC
Confidence            47999999999999999999887              899999965 3311                             


Q ss_pred             --CCCH-H----------HH--HHHHHHHHhCCCEEEeCceEEEeCCe--EEEcCCcE--EEeeEEEEcCCCCCc
Q 023375           65 --SFDD-R----------LR--HYATTQLSKSGVRLVRGIVKDVDSQK--LILNDGTE--VPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 --~~~~-~----------~~--~~~~~~l~~~gV~v~~~~V~~v~~~~--v~~~~g~~--i~~d~vi~a~G~~~~  120 (283)
                        .++- .          +.  ..+.+.+++.||+++.+++..++++.  |.+++|++  +.+|.+|+|||.+|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~  145 (466)
T 3l8k_A           71 KIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA  145 (466)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC
T ss_pred             CCCcCHHHHHHHHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc
Confidence              0110 0          11  33445566789999988888888875  45567878  999999999998776

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.61  E-value=1.4e-07  Score=86.46  Aligned_cols=91  Identities=16%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc--EEEEEeCC-CCC-----CC--------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEAN-EIL-----SS--------------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~--~V~li~~~-~~l-----~~--------------------   65 (283)
                      ..+|+|||||++|+.+|..|++.+              .  +|++||+. .+.     ..                    
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G--------------~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~   71 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEK--------------AFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI   71 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--------------CCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCB
T ss_pred             CCEEEEECccHHHHHHHHHHHhcC--------------CCCCeEEEecCCCCCCeecCCCCCCccccccccccccccccc
Confidence            468999999999999999999876              6  99999975 221     00                    


Q ss_pred             --------------------C---------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEE
Q 023375           66 --------------------F---------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLI   99 (283)
Q Consensus        66 --------------------~---------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~--~v~   99 (283)
                                          .                     ...+.+++.+..++.++.++.+ +|++++.  +  .|+
T Consensus        72 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~  151 (447)
T 2gv8_A           72 VGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVT  151 (447)
T ss_dssp             CCSSSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEE
T ss_pred             ccccccCCccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEE
Confidence                                0                     1245667777777778888888 8988864  3  466


Q ss_pred             EcC---Cc---EEEeeEEEEcCCCC
Q 023375          100 LND---GT---EVPYGLLVWSTGVG  118 (283)
Q Consensus       100 ~~~---g~---~i~~d~vi~a~G~~  118 (283)
                      +.+   |+   ++.+|.||+|+|..
T Consensus       152 ~~~~~~G~~~~~~~~d~VVvAtG~~  176 (447)
T 2gv8_A          152 YKGTKAGSPISKDIFDAVSICNGHY  176 (447)
T ss_dssp             EEESSTTCCEEEEEESEEEECCCSS
T ss_pred             EeecCCCCeeEEEEeCEEEECCCCC
Confidence            655   66   79999999999993

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.60  E-value=2.3e-07  Score=85.22  Aligned_cols=93  Identities=19%  Similarity=0.307  Sum_probs=71.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CCC-------------------C----C--
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-------------------S----F--   66 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l~-------------------~----~--   66 (283)
                      ...+|+|||||++|+.+|..|++.+              .+|+|+|+.. +..                   .    +  
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G--------------~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~   90 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEG--------------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPG   90 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTB
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCC--------------CCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhcc
Confidence            3468999999999999999999876              8899998752 210                   0    0  


Q ss_pred             ------------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC---eE
Q 023375           67 ------------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KL   98 (283)
Q Consensus        67 ------------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~---~v   98 (283)
                                                                ...+.+.+.+.+++.||+++++ +|+++.  ++   .|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V  170 (447)
T 2i0z_A           91 NGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAV  170 (447)
T ss_dssp             TGGGGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEE
T ss_pred             ChHHHHHHHHhcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEE
Confidence                                                      0233455666677889999999 898885  33   36


Q ss_pred             EEcCCcEEEeeEEEEcCCCCC
Q 023375           99 ILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        99 ~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ++.+|+++.+|.||+|+|..+
T Consensus       171 ~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          171 ILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             EETTCCEEECSCEEECCCCSS
T ss_pred             EECCCCEEECCEEEECCCCCc
Confidence            777888899999999999988

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.59  E-value=3.9e-08  Score=90.65  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CCC--CCHHHHHHHHHHHHhC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LSS--FDDRLRHYATTQLSKS   81 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~~--~~~~~~~~~~~~l~~~   81 (283)
                      +..++|+|||||++|+.+|..|++.+              .+|+|||+. .+       +|.  ++.++..+..+.+++.
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~  185 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKG--------------YEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADA  185 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence            34578999999999999999999887              899999987 43       243  4677888888899999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ||+++++ .|.    ..+.++++ .+.+|.||+|+|..+
T Consensus       186 gv~~~~~~~v~----~~v~~~~~-~~~~d~vvlAtG~~~  219 (456)
T 2vdc_G          186 GVIYHPNFEVG----RDASLPEL-RRKHVAVLVATGVYK  219 (456)
T ss_dssp             TCEEETTCCBT----TTBCHHHH-HSSCSEEEECCCCCE
T ss_pred             CcEEEeCCEec----cEEEhhHh-HhhCCEEEEecCCCC
Confidence            9999998 442    22333333 256999999999863

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.59  E-value=1.9e-07  Score=85.70  Aligned_cols=94  Identities=23%  Similarity=0.259  Sum_probs=69.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCC----------------CHHHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF----------------DDRLRHYATTQL   78 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~----------------~~~~~~~~~~~l   78 (283)
                      .+|+|||||++|+.+|..|++...            +.+|+|||+....+..                .+.+.....+.+
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~------------g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   68 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHP------------DADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEEL   68 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT------------TCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCc------------CCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHH
Confidence            379999999999999999998721            1899999987422111                111222234567


Q ss_pred             HhCCCEEEeC-ceEEEe--CCeEEEcC-----CcEEEeeEEEEcCCCCCc
Q 023375           79 SKSGVRLVRG-IVKDVD--SQKLILND-----GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~gV~v~~~-~V~~v~--~~~v~~~~-----g~~i~~d~vi~a~G~~~~  120 (283)
                      ++.||+++.+ ++..++  ++.+.+.+     ++++.+|.+|+|+|.+|.
T Consensus        69 ~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~  118 (452)
T 2cdu_A           69 SNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT  118 (452)
T ss_dssp             HHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             HHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC
Confidence            7889999888 798887  34677653     467999999999998876

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.59  E-value=5.1e-08  Score=90.86  Aligned_cols=92  Identities=22%  Similarity=0.366  Sum_probs=59.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------C---------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S---------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~---------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||++.+.         |                     
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g   68 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHN--------------AKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYG   68 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred             cCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcC
Confidence            47999999999999999999876              899999987531         0                     


Q ss_pred             -----CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcC-------------CcEEEeeEEEEc
Q 023375           65 -----SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILND-------------GTEVPYGLLVWS  114 (283)
Q Consensus        65 -----~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~-------------g~~i~~d~vi~a  114 (283)
                           .++            ..+.....+.+++.||+++.+.+..+++..+.+.+             ++++.+|.+|+|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViA  148 (500)
T 1onf_A           69 FDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIA  148 (500)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEEC
T ss_pred             CccCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEEC
Confidence                 011            11122234556788999998865556666666644             668999999999


Q ss_pred             CCCCCc
Q 023375          115 TGVGPS  120 (283)
Q Consensus       115 ~G~~~~  120 (283)
                      ||.+|.
T Consensus       149 tGs~p~  154 (500)
T 1onf_A          149 VGNKPV  154 (500)
T ss_dssp             CCCCBC
T ss_pred             CCCCCC
Confidence            999886

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.59  E-value=7.1e-08  Score=88.51  Aligned_cols=94  Identities=19%  Similarity=0.352  Sum_probs=69.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCC--------------HHHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD--------------DRLRHYATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~--------------~~~~~~~~~~l~~   80 (283)
                      ++|+|||||++|+.+|..|++..+            +.+|+|||++..++..+              +++.....+.+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~------------g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHP------------DAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMES   68 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT------------TSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCc------------CCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHH
Confidence            379999999999999999998621            18999999874322111              1122233466778


Q ss_pred             CCCEEEeC-ceEEEeC--CeEEEcC---Cc--EEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDS--QKLILND---GT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~--~~v~~~~---g~--~i~~d~vi~a~G~~~~  120 (283)
                      .||+++.+ .+..++.  +.|.+.+   |+  ++.+|.+|+|||.+|.
T Consensus        69 ~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~  116 (447)
T 1nhp_A           69 RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF  116 (447)
T ss_dssp             TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             CCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcC
Confidence            89999888 8888864  4677653   65  4899999999998876

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.58  E-value=1.1e-07  Score=87.73  Aligned_cols=92  Identities=23%  Similarity=0.298  Sum_probs=72.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------------------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||++.+..                              
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G--------------~~V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g   71 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALG--------------KKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFG   71 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCC--------------CEEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcC
Confidence            57999999999999999999887              8999999853211                              


Q ss_pred             ------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE-cCCcEEEeeEEEEcCCCCCc
Q 023375           65 ------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 ------~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~-~~g~~i~~d~vi~a~G~~~~  120 (283)
                            .++            ..+.....+.+++.||+++.+++..+++..+.+ .+++++.+|.+|+|+|.+|.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~  146 (463)
T 4dna_A           72 WTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPS  146 (463)
T ss_dssp             EEECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEEC
T ss_pred             cccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcc
Confidence                  011            122333455567789999999888888888888 57889999999999998776

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.58  E-value=2.8e-07  Score=84.95  Aligned_cols=91  Identities=26%  Similarity=0.398  Sum_probs=69.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------------------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||++.+..                              
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g--------------~~V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g   72 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLG--------------LKVLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFG   72 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcC
Confidence            58999999999999999999876              8999999875210                              


Q ss_pred             -----CCC-HHHH-----------HHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           65 -----SFD-DRLR-----------HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 -----~~~-~~~~-----------~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                           ..+ +.+.           ....+.+++.||+++.+++..++++.|.+. |+++.+|.+|+|||.+|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~-g~~~~~d~lViATGs~p~  144 (464)
T 2eq6_A           73 LKAKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG-GERYGAKSLILATGSEPL  144 (464)
T ss_dssp             EECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TEEEEEEEEEECCCEEEC
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc-cEEEEeCEEEEcCCCCCC
Confidence                 001 0111           112345677899999996555777888887 778999999999999876

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.57  E-value=1.9e-07  Score=88.11  Aligned_cols=94  Identities=16%  Similarity=0.241  Sum_probs=67.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCC--------------H-HHHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD--------------D-RLRHYATTQLS   79 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~--------------~-~~~~~~~~~l~   79 (283)
                      ++|+|||||++|+.+|..|++.+.            +.+|++|++....+...              . .+..+.....+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~------------~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   69 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSE------------TAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKA   69 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCS------------SSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCc------------CCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHH
Confidence            589999999999999999998631            28999999974322110              0 01122233344


Q ss_pred             hCCCEEEeC-ceEEEeCC--eEEEcC---Cc--EEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQ--KLILND---GT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~--~v~~~~---g~--~i~~d~vi~a~G~~~~  120 (283)
                      +.|++++.+ +|++++.+  .+.+.+   |+  ++.+|.+|+|||.+|.
T Consensus        70 ~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~  118 (565)
T 3ntd_A           70 RFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPI  118 (565)
T ss_dssp             HHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             hcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCC
Confidence            579999998 89999865  465543   54  7899999999999776

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.57  E-value=3.4e-07  Score=81.67  Aligned_cols=58  Identities=17%  Similarity=0.137  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      .+...+.+.+++.|++++.+ +|+++..+    .|.+.+| ++.+|.||+|+|.....+...++
T Consensus       165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~  227 (382)
T 1ryi_A          165 FVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLG  227 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcC
Confidence            45566777788899999998 89988653    2556566 89999999999987665655544

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.56  E-value=3e-07  Score=84.80  Aligned_cols=93  Identities=26%  Similarity=0.323  Sum_probs=68.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC---------------------------CCC-
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---------------------------LSS-   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~---------------------------l~~-   65 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||++.+                           .|. 
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g--------------~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~   69 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQG--------------AQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFD   69 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhc
Confidence            368999999999999999999876              89999998632                           111 


Q ss_pred             ---------CC-HHHHH-------H-----HHHHHHhC-CCEEEeCceEEEeCCeE--EEcCC--cEEEeeEEEEcCCCC
Q 023375           66 ---------FD-DRLRH-------Y-----ATTQLSKS-GVRLVRGIVKDVDSQKL--ILNDG--TEVPYGLLVWSTGVG  118 (283)
Q Consensus        66 ---------~~-~~~~~-------~-----~~~~l~~~-gV~v~~~~V~~v~~~~v--~~~~g--~~i~~d~vi~a~G~~  118 (283)
                               .+ ..+..       .     ..+.+++. ||+++.+++..++.+.+  .+.+|  +++.+|.+|+|||.+
T Consensus        70 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~  149 (467)
T 1zk7_A           70 GGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGAS  149 (467)
T ss_dssp             TTSCCCCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEE
T ss_pred             CCccCCCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCC
Confidence                     11 11111       1     12445666 99999888778887754  44577  679999999999987


Q ss_pred             Cc
Q 023375          119 PS  120 (283)
Q Consensus       119 ~~  120 (283)
                      |.
T Consensus       150 p~  151 (467)
T 1zk7_A          150 PA  151 (467)
T ss_dssp             EC
T ss_pred             CC
Confidence            76

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.56  E-value=1.6e-07  Score=86.25  Aligned_cols=98  Identities=17%  Similarity=0.186  Sum_probs=70.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CC-------CC--------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------SS--------------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l-------~~--------------------   65 (283)
                      ..+|+|||||++|+.+|..|++.+...        .. .+|++||+.. +.       +.                    
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~--------~~-~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~  100 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQ--------GA-LEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSP  100 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHH--------CC-CCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhccccc--------Cc-ccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCC
Confidence            347999999999999999999876210        00 5899998763 11       00                    


Q ss_pred             ------------------------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---------eEEEcCCc----EEE
Q 023375           66 ------------------------FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---------KLILNDGT----EVP  107 (283)
Q Consensus        66 ------------------------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~---------~v~~~~g~----~i~  107 (283)
                                              ...++.+++....++.+++++.+ +|++++.+         .|.+.+|+    ++.
T Consensus       101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~  180 (463)
T 3s5w_A          101 YSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRT  180 (463)
T ss_dssp             TSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEE
T ss_pred             CChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEE
Confidence                                    01344556666667779999999 79888643         45566665    899


Q ss_pred             eeEEEEcCCCCCc
Q 023375          108 YGLLVWSTGVGPS  120 (283)
Q Consensus       108 ~d~vi~a~G~~~~  120 (283)
                      +|.||+|+|..|.
T Consensus       181 ~d~lVlAtG~~p~  193 (463)
T 3s5w_A          181 TRALVVSPGGTPR  193 (463)
T ss_dssp             ESEEEECCCCEEC
T ss_pred             eCEEEECCCCCCC
Confidence            9999999998765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.56  E-value=3.3e-07  Score=87.00  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=71.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCC-------------C--HHHHHHHHH
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF-------------D--DRLRHYATT   76 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~-------------~--~~~~~~~~~   76 (283)
                      ...++|+|||||++|+.+|..|++...            +.+|++||+....+..             +  ..+..+...
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~------------g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~  101 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSE------------EDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVER  101 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCS------------SSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHH
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCc------------CCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHH
Confidence            345799999999999999999998731            2899999997332110             0  112334556


Q ss_pred             HHHhCCCEEEeC-ceEEEeCC--eEEEc---CCc--EEEeeEEEEcCCCCCc
Q 023375           77 QLSKSGVRLVRG-IVKDVDSQ--KLILN---DGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        77 ~l~~~gV~v~~~-~V~~v~~~--~v~~~---~g~--~i~~d~vi~a~G~~~~  120 (283)
                      ..++.|++++.+ +|++++.+  .+.+.   +|+  ++.+|.+|+|||.+|.
T Consensus       102 ~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~  153 (588)
T 3ics_A          102 MSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPI  153 (588)
T ss_dssp             HHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             HHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCC
Confidence            667889999988 89998764  55553   465  7899999999998776

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.56  E-value=2.2e-07  Score=86.31  Aligned_cols=92  Identities=15%  Similarity=0.270  Sum_probs=69.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHH-hhhhHHHhhcCCCCCccEEEEEe---------CCCCCC--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE---------ANEILS--------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~-~~~~~~~~~~~~~~~~~~V~li~---------~~~~l~--------------------   64 (283)
                      .+|+|||||+.|+.+|..|++ .+              .+|+|||         .+.+..                    
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G--------------~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~   69 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHK--------------KRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYM   69 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHC--------------CCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHH
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcC--------------CEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHH
Confidence            589999999999999999998 76              8999999         333211                    


Q ss_pred             ------------------CCC-HH-----------HHHHHHHHHHhC-CCEEEeCceEEEeCCeEEEc-----CC---cE
Q 023375           65 ------------------SFD-DR-----------LRHYATTQLSKS-GVRLVRGIVKDVDSQKLILN-----DG---TE  105 (283)
Q Consensus        65 ------------------~~~-~~-----------~~~~~~~~l~~~-gV~v~~~~V~~v~~~~v~~~-----~g---~~  105 (283)
                                        .++ +.           +.....+.+++. ||+++.+.++.++++.+.+.     +|   ++
T Consensus        70 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~  149 (490)
T 1fec_A           70 DTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLET  149 (490)
T ss_dssp             HHHHHGGGGTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEE
T ss_pred             HHHHHHHhcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEE
Confidence                              001 01           112234456678 99999998778888888874     67   68


Q ss_pred             EEeeEEEEcCCCCCc
Q 023375          106 VPYGLLVWSTGVGPS  120 (283)
Q Consensus       106 i~~d~vi~a~G~~~~  120 (283)
                      +.+|.+|+|||.+|.
T Consensus       150 ~~~d~lviAtGs~p~  164 (490)
T 1fec_A          150 LDTEYILLATGSWPQ  164 (490)
T ss_dssp             EEEEEEEECCCEEEC
T ss_pred             EEcCEEEEeCCCCCC
Confidence            999999999998876

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.54  E-value=3.7e-07  Score=84.54  Aligned_cols=95  Identities=23%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCC--------------CHHHHHHHHHHH-
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF--------------DDRLRHYATTQL-   78 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~--------------~~~~~~~~~~~l-   78 (283)
                      ..+|+|||||++|+.+|..|++...            +.+|+|||+....+..              ..++.....+.+ 
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~------------g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  103 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDE------------NANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFR  103 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCT------------TCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCc------------CCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHH
Confidence            4689999999999999999988621            2899999987432111              111111223445 


Q ss_pred             HhCCCEEEeC-ceEEEeC--CeEEEc---CCc--EEEeeEEEEcCCCCCc
Q 023375           79 SKSGVRLVRG-IVKDVDS--QKLILN---DGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        79 ~~~gV~v~~~-~V~~v~~--~~v~~~---~g~--~i~~d~vi~a~G~~~~  120 (283)
                      ++.||+++.+ +|+.++.  +.+.+.   +|+  ++.+|.+|+|+|.+|.
T Consensus       104 ~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~  153 (480)
T 3cgb_A          104 DKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV  153 (480)
T ss_dssp             HTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             hhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc
Confidence            3459999998 8998874  356664   366  7999999999998876

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.54  E-value=4.6e-08  Score=91.22  Aligned_cols=94  Identities=15%  Similarity=0.292  Sum_probs=65.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C--CCC--------CCH-HHHHHHHHHH--H
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I--LSS--------FDD-RLRHYATTQL--S   79 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~--l~~--------~~~-~~~~~~~~~l--~   79 (283)
                      .++|||||||+.|+.+|..|....              .+||||++.. +  .|.        +++ .+...+.+.+  .
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~--------------~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~  107 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKK--------------YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKK  107 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTT--------------CEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTC
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCC--------------CcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhh
Confidence            458999999999999999886543              8999999863 1  121        111 1111122332  2


Q ss_pred             hCCCEEEeCceEEEeCC--eEEE--------------------cCCcEEEeeEEEEcCCCCCch
Q 023375           80 KSGVRLVRGIVKDVDSQ--KLIL--------------------NDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        80 ~~gV~v~~~~V~~v~~~--~v~~--------------------~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      +.+++++.++|++|+.+  .|++                    .++.+++||.+|+|+|.+|+.
T Consensus       108 ~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~  171 (502)
T 4g6h_A          108 KGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT  171 (502)
T ss_dssp             SSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC
T ss_pred             cCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc
Confidence            45799998889998764  4554                    246789999999999998873

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.52  E-value=4e-07  Score=84.49  Aligned_cols=93  Identities=16%  Similarity=0.214  Sum_probs=67.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------------------------   64 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||+. .+..                            
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G--------------~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~   90 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLG--------------MKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLE   90 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHh
Confidence            368999999999999999999887              899999975 3310                            


Q ss_pred             CC---------C------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCC--cEEEeeEEEEcCCCCC
Q 023375           65 SF---------D------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYGLLVWSTGVGP  119 (283)
Q Consensus        65 ~~---------~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g--~~i~~d~vi~a~G~~~  119 (283)
                      .+         +            ..+.......+++.+|+++.+....++++.+.+  .+|  +++.+|.+|+|||.+|
T Consensus        91 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p  170 (491)
T 3urh_A           91 ALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV  170 (491)
T ss_dssp             GGTEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEEC
T ss_pred             hcCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCC
Confidence            00         0            011223445567889999998666666665544  455  5799999999999887


Q ss_pred             c
Q 023375          120 S  120 (283)
Q Consensus       120 ~  120 (283)
                      .
T Consensus       171 ~  171 (491)
T 3urh_A          171 A  171 (491)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.51  E-value=2.8e-07  Score=84.73  Aligned_cols=92  Identities=18%  Similarity=0.330  Sum_probs=68.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------C--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------S--------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------~--------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||++ .+.         |                    
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g   67 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLG--------------MKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLG   67 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             CCEEEECCChhHHHHHHHHHHCC--------------CeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCC
Confidence            37999999999999999999876              899999987 431         0                    


Q ss_pred             ------CCC-HH-----------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEEc-CCcEEEeeEEEEcCCCCCc
Q 023375           65 ------SFD-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 ------~~~-~~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~-~g~~i~~d~vi~a~G~~~~  120 (283)
                            ..+ +.           +...+.+.+++.||+++.+.+..++++.+.+. +|+++.+|.+|+|||.+|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~  142 (455)
T 2yqu_A           68 AKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPL  142 (455)
T ss_dssp             EEECCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEEC
T ss_pred             cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCC
Confidence                  001 01           11123455677899999986555666766665 5788999999999999876

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.51  E-value=2.2e-07  Score=86.40  Aligned_cols=92  Identities=15%  Similarity=0.257  Sum_probs=69.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHH-hhhhHHHhhcCCCCCccEEEEEe---------CCCCCC--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE---------ANEILS--------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~-~~~~~~~~~~~~~~~~~~V~li~---------~~~~l~--------------------   64 (283)
                      .+|+|||||+.|+.+|..|++ .+              .+|+|||         ...+..                    
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G--------------~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~   73 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYG--------------KRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYM   73 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHC--------------CCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHH
T ss_pred             cCEEEECCChhHHHHHHHHHHhcC--------------CeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHH
Confidence            589999999999999999998 76              8999999         323210                    


Q ss_pred             ------------------CCC-HHHH-----------HHHHHHHHhC-CCEEEeCceEEEeCCeEEEc---C-----CcE
Q 023375           65 ------------------SFD-DRLR-----------HYATTQLSKS-GVRLVRGIVKDVDSQKLILN---D-----GTE  105 (283)
Q Consensus        65 ------------------~~~-~~~~-----------~~~~~~l~~~-gV~v~~~~V~~v~~~~v~~~---~-----g~~  105 (283)
                                        .++ ..+.           ......+++. ||+++.++++.+++..|.++   +     +++
T Consensus        74 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~  153 (495)
T 2wpf_A           74 DHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKER  153 (495)
T ss_dssp             HHHHHHHTTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEE
T ss_pred             HHHhHHHhcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeE
Confidence                              000 0111           1223345677 99999998777888888886   4     678


Q ss_pred             EEeeEEEEcCCCCCc
Q 023375          106 VPYGLLVWSTGVGPS  120 (283)
Q Consensus       106 i~~d~vi~a~G~~~~  120 (283)
                      +.+|.+|+|||.+|.
T Consensus       154 ~~~d~lViATGs~p~  168 (495)
T 2wpf_A          154 LQADHILLATGSWPQ  168 (495)
T ss_dssp             EEEEEEEECCCEEEC
T ss_pred             EEcCEEEEeCCCCcC
Confidence            999999999999876

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.51  E-value=5.9e-07  Score=82.83  Aligned_cols=93  Identities=24%  Similarity=0.284  Sum_probs=68.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~---------------------------   65 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|++||+. .+...                           
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g--------------~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~   71 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLG--------------FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFA   71 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999876              899999987 43110                           


Q ss_pred             ----------CC-HH-----------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCC--cEEEeeEEEEcCCCCC
Q 023375           66 ----------FD-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYGLLVWSTGVGP  119 (283)
Q Consensus        66 ----------~~-~~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g--~~i~~d~vi~a~G~~~  119 (283)
                                .+ +.           +...+.+.+++.||+++.+....++++.+.+  .+|  +++.+|.+|+|+|.+|
T Consensus        72 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p  151 (470)
T 1dxl_A           72 NHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV  151 (470)
T ss_dssp             HHTEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE
T ss_pred             hcCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCC
Confidence                      00 00           1112345566789999999544577776555  356  6899999999999987


Q ss_pred             c
Q 023375          120 S  120 (283)
Q Consensus       120 ~  120 (283)
                      .
T Consensus       152 ~  152 (470)
T 1dxl_A          152 K  152 (470)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.50  E-value=4e-07  Score=85.25  Aligned_cols=92  Identities=14%  Similarity=0.185  Sum_probs=70.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CCC----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS----------------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l~----------------------------   64 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||++. +..                            
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G--------------~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~  108 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMG--------------GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSG  108 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhh
Confidence            468999999999999999999886              8999999875 311                            


Q ss_pred             -----CC------CHHHHHHH----H---HHH-----HhCCCEEE-eCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           65 -----SF------DDRLRHYA----T---TQL-----SKSGVRLV-RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 -----~~------~~~~~~~~----~---~~l-----~~~gV~v~-~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                           .+      ..++...+    .   +.+     ++.||+++ .++++.++...|.+. ++++.+|.+|+|||.+|.
T Consensus       109 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~  187 (523)
T 1mo9_A          109 QYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPG  187 (523)
T ss_dssp             STTCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECC
T ss_pred             cCcHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCC
Confidence                 11      11222222    2   455     77899999 458888888888876 778999999999999876

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.50  E-value=5.5e-07  Score=81.15  Aligned_cols=93  Identities=22%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC------CCHHHHHH-------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRLRHY-------------   73 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~------~~~~~~~~-------------   73 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|+|+. ...+.      +.+...+.             
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~   70 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAG--------------VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISV   70 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCB
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccc
Confidence            468999999999999999999887              899999986 32111      22222211             


Q ss_pred             ------------------------------HHHHHHh--CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCC
Q 023375           74 ------------------------------ATTQLSK--SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTG  116 (283)
Q Consensus        74 ------------------------------~~~~l~~--~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G  116 (283)
                                                    +.+.|.+  .|++++.+ +|++++.+    .|++.+|+++.+|.||.|.|
T Consensus        71 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  150 (397)
T 2vou_A           71 PSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADG  150 (397)
T ss_dssp             CCCEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCC
T ss_pred             cccceEEEecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCC
Confidence                                          1222222  37888888 78888543    36678898999999999999


Q ss_pred             CCCc
Q 023375          117 VGPS  120 (283)
Q Consensus       117 ~~~~  120 (283)
                      ..+.
T Consensus       151 ~~S~  154 (397)
T 2vou_A          151 GASV  154 (397)
T ss_dssp             TTCH
T ss_pred             cchh
Confidence            8765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.50  E-value=4.1e-07  Score=83.61  Aligned_cols=92  Identities=23%  Similarity=0.283  Sum_probs=68.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------------------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||+..+..                              
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g--------------~~V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g   69 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLG--------------QKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMG   69 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcC
Confidence            57999999999999999999876              8999999863210                              


Q ss_pred             ------CCCH-H-----------HHHHHHHHHHhCCCEEEeCceEEEeCCeEE--EcCC-cEEEeeEEEEcCCCCCc
Q 023375           65 ------SFDD-R-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLI--LNDG-TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 ------~~~~-~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~--~~~g-~~i~~d~vi~a~G~~~~  120 (283)
                            ..+. .           +...+.+.+++.||+++.+....++++.+.  +.+| +++.+|.+|+|||.+|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~  146 (455)
T 1ebd_A           70 IKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI  146 (455)
T ss_dssp             EECCSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEEC
T ss_pred             cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCC
Confidence                  0000 0           222335567788999999954457777544  4566 68999999999999876

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.49  E-value=4.8e-07  Score=83.59  Aligned_cols=92  Identities=20%  Similarity=0.255  Sum_probs=67.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC----------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS----------------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~----------------------------   65 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||+. .+...                            
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~   72 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLG--------------FKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFA   72 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHh
Confidence            57999999999999999999876              899999987 33100                            


Q ss_pred             ----------CC-HH-----------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cC-C-cEEEeeEEEEcCCCCC
Q 023375           66 ----------FD-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--ND-G-TEVPYGLLVWSTGVGP  119 (283)
Q Consensus        66 ----------~~-~~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~-g-~~i~~d~vi~a~G~~~  119 (283)
                                .+ +.           +...+.+.+++.||+++.+.+..++++.+.+  .+ + +++.+|.+|+|||.+|
T Consensus        73 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p  152 (474)
T 1zmd_A           73 SRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEV  152 (474)
T ss_dssp             HTTEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred             hCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCC
Confidence                      00 01           1112345677889999999655677775544  45 4 5799999999999987


Q ss_pred             c
Q 023375          120 S  120 (283)
Q Consensus       120 ~  120 (283)
                      .
T Consensus       153 ~  153 (474)
T 1zmd_A          153 T  153 (474)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.47  E-value=6.7e-07  Score=80.89  Aligned_cols=91  Identities=16%  Similarity=0.306  Sum_probs=68.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------CC--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~~--------------------   65 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|+....         |.                    
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G--------------~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~   71 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSG--------------FKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQ   71 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCc
Confidence            58999999999999999999876              788888875210         00                    


Q ss_pred             -------------------------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce----EEEcCCc--
Q 023375           66 -------------------------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LILNDGT--  104 (283)
Q Consensus        66 -------------------------------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~----v~~~~g~--  104 (283)
                                                     + ...+...+.+.+++.|++++.+ +|++++.  +.    +.+.+|+  
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~  151 (421)
T 3nix_A           72 QKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKR  151 (421)
T ss_dssp             EECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEE
T ss_pred             ccCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEE
Confidence                                           0 1244555666677789999999 8988863  32    4446787  


Q ss_pred             EEEeeEEEEcCCCCC
Q 023375          105 EVPYGLLVWSTGVGP  119 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~  119 (283)
                      ++.+|.||.|+|..+
T Consensus       152 ~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          152 EIEARFIIDASGYGR  166 (421)
T ss_dssp             EEEEEEEEECCGGGC
T ss_pred             EEEcCEEEECCCCch
Confidence            799999999999776

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.47  E-value=3e-07  Score=85.14  Aligned_cols=93  Identities=23%  Similarity=0.289  Sum_probs=68.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC-----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~-----------------------------   64 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||++.+..                             
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~   76 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYG--------------AKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEY   76 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTS--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCC--------------CcEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhc
Confidence            368999999999999999999876              8999999864210                             


Q ss_pred             -------------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEE--EcCCc--EEEeeEEEEcC
Q 023375           65 -------------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLI--LNDGT--EVPYGLLVWST  115 (283)
Q Consensus        65 -------------~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~--~~~g~--~i~~d~vi~a~  115 (283)
                                   .++            ..+...+.+.+++.||+++.+++..++++.+.  +.+|+  ++.+|.+|+||
T Consensus        77 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAt  156 (479)
T 2hqm_A           77 GLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVAT  156 (479)
T ss_dssp             TBSTTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECC
T ss_pred             CcccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcC
Confidence                         000            01112234556778999998877777766544  45676  89999999999


Q ss_pred             CCCCc
Q 023375          116 GVGPS  120 (283)
Q Consensus       116 G~~~~  120 (283)
                      |.+|.
T Consensus       157 Gs~p~  161 (479)
T 2hqm_A          157 GGKAI  161 (479)
T ss_dssp             CEEEC
T ss_pred             CCCCC
Confidence            98876

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.47  E-value=6.2e-07  Score=82.67  Aligned_cols=92  Identities=21%  Similarity=0.256  Sum_probs=67.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC----------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS----------------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~----------------------------   65 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||+. .+...                            
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g--------------~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~   68 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLG--------------MKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFAR   68 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999887              899999997 43100                            


Q ss_pred             ----------CC-HH-----------HHHHHHHHHHhCCCEEEeCceEEEeCCeEE--EcCC--cEEEeeEEEEcCCCCC
Q 023375           66 ----------FD-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLI--LNDG--TEVPYGLLVWSTGVGP  119 (283)
Q Consensus        66 ----------~~-~~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~--~~~g--~~i~~d~vi~a~G~~~  119 (283)
                                .+ +.           +.....+.+++.||+++.+....++++.+.  +.+|  +++.+|.+|+|||.+|
T Consensus        69 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p  148 (468)
T 2qae_A           69 YGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEP  148 (468)
T ss_dssp             HTEECGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEE
T ss_pred             cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCc
Confidence                      00 01           111234556778999999855557777544  4567  6899999999999987


Q ss_pred             c
Q 023375          120 S  120 (283)
Q Consensus       120 ~  120 (283)
                      .
T Consensus       149 ~  149 (468)
T 2qae_A          149 T  149 (468)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.45  E-value=6.6e-07  Score=83.21  Aligned_cols=92  Identities=28%  Similarity=0.420  Sum_probs=68.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHh---hhhHHHhhcCCCCCccEEEEEeCCCCC---------------------------C
Q 023375           15 LHCVVVGGGPTGVEFSGELSDF---IMRDVRQRYSHVKDYIHVTLIEANEIL---------------------------S   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~---~~~~~~~~~~~~~~~~~V~li~~~~~l---------------------------~   64 (283)
                      .+|+|||||++|+.+|..|++.   +              .+|+|||++.+.                           +
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G--------------~~V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~   68 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPET--------------TQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAP   68 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTT--------------EEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCc--------------CEEEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999987   5              899999987420                           0


Q ss_pred             --CC---------C-HH-----------HHHHHHHHHHhCCCEEEeCceEEEeC------Ce--EEEcCCc--EEEeeEE
Q 023375           65 --SF---------D-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDS------QK--LILNDGT--EVPYGLL  111 (283)
Q Consensus        65 --~~---------~-~~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~------~~--v~~~~g~--~i~~d~v  111 (283)
                        .+         + ..           +.....+.+++.||+++.+.+..++.      +.  |.+.+|+  ++.+|.+
T Consensus        69 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~l  148 (499)
T 1xdi_A           69 HLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVV  148 (499)
T ss_dssp             TTTBC------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEE
T ss_pred             hCCCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEE
Confidence              00         1 11           22234566788999999997777776      44  3445676  7999999


Q ss_pred             EEcCCCCCc
Q 023375          112 VWSTGVGPS  120 (283)
Q Consensus       112 i~a~G~~~~  120 (283)
                      |+|+|.+|.
T Consensus       149 viATGs~p~  157 (499)
T 1xdi_A          149 LVATGASPR  157 (499)
T ss_dssp             EECCCEEEC
T ss_pred             EEcCCCCCC
Confidence            999999876

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.45  E-value=9.7e-07  Score=77.97  Aligned_cols=59  Identities=14%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEEcCC--cEEEeeEEEEcCCCCCchhhhcc-CC
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDG--TEVPYGLLVWSTGVGPSTLVKSL-DL  128 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~g--~~i~~d~vi~a~G~~~~~~~~~~-~l  128 (283)
                      +...+.+.+++.|++++++ +|+++..+     .|.+.+|  .++.+|.||+|+|.....+...+ ++
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~  219 (369)
T 3dme_A          152 LMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGI  219 (369)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETS
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCC
Confidence            3344556677889999998 89988642     3566677  48999999999998876776666 54

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.44  E-value=1e-06  Score=78.68  Aligned_cols=56  Identities=16%  Similarity=0.145  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEeCC--e---EEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVDSQ--K---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~~~--~---v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      ...+.+.+++.|++++.+ +|++++.+  .   |++.+| ++.+|.||+|+|.....+...++
T Consensus       152 ~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g  213 (382)
T 1y56_B          152 TTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAG  213 (382)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcC
Confidence            344556677889999998 89988642  2   556666 79999999999987655544433

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.43  E-value=1.4e-06  Score=83.08  Aligned_cols=92  Identities=17%  Similarity=0.247  Sum_probs=69.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C-CC-----C------------------C----
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-IL-----S------------------S----   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~-~l-----~------------------~----   65 (283)
                      ..|+|||||++|+++|..+++.+              .+|+|||++ . +.     |                  .    
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G--------------~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~   94 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMG--------------QQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAK   94 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHH
T ss_pred             CCEEEECChHHHHHHHHHHHhCC--------------CCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHH
Confidence            58999999999999999999987              899999975 1 11     0                  0    


Q ss_pred             --------------------------CC-HHHHHHHHHHHHh-CCCEEEeCceEEEe--CC---eEEEcCCcEEEeeEEE
Q 023375           66 --------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLV  112 (283)
Q Consensus        66 --------------------------~~-~~~~~~~~~~l~~-~gV~v~~~~V~~v~--~~---~v~~~~g~~i~~d~vi  112 (283)
                                                .+ ..+...+.+.+++ .||+++..+|+++.  ++   +|.+.+|+++.+|.||
T Consensus        95 ~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VV  174 (651)
T 3ces_A           95 AIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVV  174 (651)
T ss_dssp             HHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEE
T ss_pred             HhhhcccchhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEE
Confidence                                      00 1344556667777 69999655888884  33   4677788899999999


Q ss_pred             EcCCCCCc
Q 023375          113 WSTGVGPS  120 (283)
Q Consensus       113 ~a~G~~~~  120 (283)
                      +|+|..+.
T Consensus       175 LATGt~s~  182 (651)
T 3ces_A          175 LTVGTFLD  182 (651)
T ss_dssp             ECCSTTTC
T ss_pred             EcCCCCcc
Confidence            99998754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.42  E-value=5.2e-08  Score=85.63  Aligned_cols=54  Identities=9%  Similarity=0.013  Sum_probs=37.3

Q ss_pred             ccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          135 RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       135 ~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .+.++..+++ +.|+||++||++...++...  .-++...++.+|+.+|+.|.+.+.
T Consensus       272 ~iv~~~~~~t-~vpGv~aaGDaa~~v~g~~r--mGp~~g~mi~SG~~AAe~I~~~la  325 (326)
T 3fpz_A          272 DVVIHSGAYA-GVDNMYFAGMEVAELDGLNR--MGPTFGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             HHHHHCEECT-TSBTEEECTHHHHHHHTCCB--CCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEECCCeEE-CCCCEEEEchHhccccCCCc--CchHHHHHHHHHHHHHHHHHHHhc
Confidence            4666777777 89999999999864322100  012344567889999999988764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.42  E-value=1.8e-06  Score=77.54  Aligned_cols=92  Identities=13%  Similarity=0.219  Sum_probs=69.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC------CC------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------LS------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~------l~------------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|+...      ..                        
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~   68 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAG--------------IDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARD   68 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHH
T ss_pred             ccEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhc
Confidence            47999999999999999999887              78888886521      00                        


Q ss_pred             -------------------------C-----CC-HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEE-cCCc--
Q 023375           65 -------------------------S-----FD-DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLIL-NDGT--  104 (283)
Q Consensus        65 -------------------------~-----~~-~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~-~~g~--  104 (283)
                                               .     ++ ..+...+.+.+.+.|++++.+ +|++++.+     .|++ .+|+  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~  148 (394)
T 1k0i_A           69 GLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERL  148 (394)
T ss_dssp             CEEESCEEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEE
T ss_pred             CCccceEEEEECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEE
Confidence                                     0     01 234455666677789999999 89998642     4666 6887  


Q ss_pred             EEEeeEEEEcCCCCCc
Q 023375          105 EVPYGLLVWSTGVGPS  120 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~~  120 (283)
                      ++.+|.||.|.|..+.
T Consensus       149 ~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          149 RLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             EEECSEEEECCCTTCS
T ss_pred             EEEeCEEEECCCCCcH
Confidence            7999999999998765

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.42  E-value=1.9e-06  Score=80.92  Aligned_cols=92  Identities=18%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC--------CCC-------------C------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI--------LSS-------------F------   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~--------l~~-------------~------   66 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|+. .+        .|.             +      
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G--------------~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~   82 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELG--------------RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQ   82 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhh
Confidence            58999999999999999999876              899999985 32        110             0      


Q ss_pred             ----------CHHHHHHHHHHHHhCC--CEEEeC-ceEEEe--CC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           67 ----------DDRLRHYATTQLSKSG--VRLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        67 ----------~~~~~~~~~~~l~~~g--V~v~~~-~V~~v~--~~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                                .+++.+++....++.+  ++++.+ +|++++  ++    .|++++|+++.+|.||.|+|....
T Consensus        83 ~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~  155 (542)
T 1w4x_A           83 EWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSV  155 (542)
T ss_dssp             HCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred             ccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCC
Confidence                      1345666666667766  568888 788875  22    477788889999999999996433

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.40  E-value=1.4e-07  Score=86.96  Aligned_cols=90  Identities=18%  Similarity=0.203  Sum_probs=67.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CCC--CHHHHHHHHHHHHhC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SSF--DDRLRHYATTQLSKS   81 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~~--~~~~~~~~~~~l~~~   81 (283)
                      ..++|+|||||++|+++|..|++.+.            +.+|++|++. .+.        |..  ..++..++.+.+++.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~------------~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~   72 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHS------------RAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSD   72 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCS------------SCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTST
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCC------------CCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhC
Confidence            45799999999999999999987642            2899999986 443        322  235667778888899


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ||+++.+ .|.    ..|.+++ .++.||.||+|||..+
T Consensus        73 gv~~~~~~~v~----~~V~~~~-~~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           73 RCAFYGNVEVG----RDVTVQE-LQDAYHAVVLSYGAED  106 (460)
T ss_dssp             TEEEEBSCCBT----TTBCHHH-HHHHSSEEEECCCCCE
T ss_pred             CcEEEeeeEEe----eEEEecc-ceEEcCEEEEecCcCC
Confidence            9999998 552    3344444 3468999999999985

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.40  E-value=1.1e-06  Score=78.84  Aligned_cols=58  Identities=12%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      .+...+.+.+++.|++++.+ +|+++..  +   .|++.+| ++.+|.||+|+|.....+...++
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g  238 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAG  238 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcC
Confidence            44555667778889999998 8998863  2   3566666 79999999999987655544444

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.40  E-value=2.1e-06  Score=81.58  Aligned_cols=92  Identities=21%  Similarity=0.287  Sum_probs=69.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCC---------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSF---------------------------   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~---------------------------   66 (283)
                      ..|+|||||++|+++|..+++.+              .+|+|||++ ..+..+                           
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G--------------~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~   93 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMG--------------AKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGK   93 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHH
Confidence            58999999999999999999987              899999875 111000                           


Q ss_pred             ----------------------------CHHHHHHHHHHHHh-CCCEEEeCceEEEe--CC---eEEEcCCcEEEeeEEE
Q 023375           67 ----------------------------DDRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLV  112 (283)
Q Consensus        67 ----------------------------~~~~~~~~~~~l~~-~gV~v~~~~V~~v~--~~---~v~~~~g~~i~~d~vi  112 (283)
                                                  ...+...+.+.+++ .||+++..+|+++.  ++   +|.+.+|+++.+|.||
T Consensus        94 ~~d~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVV  173 (637)
T 2zxi_A           94 AIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVV  173 (637)
T ss_dssp             HHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEE
T ss_pred             HhhhcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEE
Confidence                                        01234555666777 59999655888874  33   3778889999999999


Q ss_pred             EcCCCCCc
Q 023375          113 WSTGVGPS  120 (283)
Q Consensus       113 ~a~G~~~~  120 (283)
                      +|+|..++
T Consensus       174 LATG~~s~  181 (637)
T 2zxi_A          174 VTTGTFLN  181 (637)
T ss_dssp             ECCTTCBT
T ss_pred             EccCCCcc
Confidence            99998754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.40  E-value=1.4e-07  Score=95.07  Aligned_cols=91  Identities=16%  Similarity=0.309  Sum_probs=71.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS   81 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~   81 (283)
                      ..++|+|||||++|+.+|..|++.+              . +|+|||+. .+.       |  .++.+..++..+.+++.
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G--------------~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~  251 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLG--------------YSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDL  251 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcC--------------CCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHC
Confidence            4578999999999999999999887              6 79999986 332       2  23566677777889999


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCC-CCc
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~-~~~  120 (283)
                      ||+++++ .+.   ...++++++.++.+|.||+|||. +|.
T Consensus       252 gv~~~~~~~v~---~~~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          252 GVKIICGKSLS---ENEITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             TCEEEESCCBS---TTSBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             CcEEEcccEec---cceEEhhhcCccCCCEEEEecCCCCCC
Confidence            9999998 452   13455555556789999999998 465

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.39  E-value=4e-07  Score=84.20  Aligned_cols=92  Identities=21%  Similarity=0.359  Sum_probs=68.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC-----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~-----------------------------   64 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||++.+..                             
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G--------------~~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~   85 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELG--------------ARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADY   85 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999999999887              8999999765310                             


Q ss_pred             -------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           65 -------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        65 -------~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                             .++            ..+.......+++.||+++.+.+..++.+  .|. .+++++.+|.+|+|||.+|.
T Consensus        86 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~  161 (478)
T 3dk9_A           86 GFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPS  161 (478)
T ss_dssp             TSCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETTEEEECSCEEECCCEEEC
T ss_pred             CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCC
Confidence                   011            12223344556778999999876666554  344 56788999999999998776

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.39  E-value=1.2e-07  Score=87.29  Aligned_cols=93  Identities=12%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHH-hhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CC--CCHHHHHHHHHHHHhC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SS--FDDRLRHYATTQLSKS   81 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~-~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~--~~~~~~~~~~~~l~~~   81 (283)
                      .++|+|||||++|+.+|..|++ ..+.        ...+.+|+||++. .+.        |.  ...++..++.+.+++.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~--------~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~   74 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTT--------EDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDP   74 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHS--------TTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTST
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccc--------cCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcC
Confidence            4689999999999999999988 6210        0012899999987 432        21  2235667778888889


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ||+++.+ .+    ...|+++++ ++.||.||+|+|..+
T Consensus        75 ~v~~~~~v~v----~~~v~~~~~-~~~~d~lViAtG~~~  108 (456)
T 1lqt_A           75 RFRFFGNVVV----GEHVQPGEL-SERYDAVIYAVGAQS  108 (456)
T ss_dssp             TEEEEESCCB----TTTBCHHHH-HHHSSEEEECCCCCE
T ss_pred             CCEEEeeEEE----CCEEEECCC-eEeCCEEEEeeCCCC
Confidence            9999988 43    344555555 478999999999973

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.38  E-value=7.3e-07  Score=82.11  Aligned_cols=92  Identities=23%  Similarity=0.293  Sum_probs=66.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------CC--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~~--------------------   65 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||+..+.         |.                    
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G--------------~~V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~   69 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLG--------------LSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAF   69 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhc
Confidence            47999999999999999999876              899999986321         00                    


Q ss_pred             -------CC-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeE--EEcCC--cEEEeeEEEEcCCCCCc
Q 023375           66 -------FD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKL--ILNDG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        66 -------~~-~-----------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v--~~~~g--~~i~~d~vi~a~G~~~~  120 (283)
                             .+ +           .+...+.+.+++.||+++.+....++.+.+  .+.+|  +++.+|.+|+|+|..|.
T Consensus        70 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~  147 (464)
T 2a8x_A           70 GISGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTR  147 (464)
T ss_dssp             TEEECCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEEC
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence                   00 0           011223456777899999884333555544  44567  68999999999999876

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.38  E-value=2.2e-06  Score=77.28  Aligned_cols=93  Identities=19%  Similarity=0.254  Sum_probs=67.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-----C-------------------
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-----F-------------------   66 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-----~-------------------   66 (283)
                      .+..+|+|||||++|+.+|..|++.+              .+|+|+|+. ..-+.     +                   
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G--------------~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~   86 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSG--------------IDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET   86 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHh
Confidence            44579999999999999999999987              889999875 22100     0                   


Q ss_pred             ---------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEEcC
Q 023375           67 ---------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILND  102 (283)
Q Consensus        67 ---------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~--~v~~~~  102 (283)
                                                             ...+.+.+.+.+.+  ++++.+ +|++++.  +  .|++++
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~  164 (407)
T 3rp8_A           87 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTD  164 (407)
T ss_dssp             HSCCCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETT
T ss_pred             hcCCCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcC
Confidence                                                   01233444444444  788888 7888854  3  466789


Q ss_pred             CcEEEeeEEEEcCCCCCc
Q 023375          103 GTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       103 g~~i~~d~vi~a~G~~~~  120 (283)
                      |+++.+|.||.|.|....
T Consensus       165 g~~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          165 GSSASGDLLIAADGSHSA  182 (407)
T ss_dssp             SCEEEESEEEECCCTTCS
T ss_pred             CCEEeeCEEEECCCcChH
Confidence            999999999999998765

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.36  E-value=2e-06  Score=78.01  Aligned_cols=76  Identities=16%  Similarity=0.189  Sum_probs=53.7

Q ss_pred             HhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCC--------CCCc-hh--hhccCCCCCCCCccccCCCc
Q 023375           79 SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTG--------VGPS-TL--VKSLDLPKSPGGRIGIDEWL  142 (283)
Q Consensus        79 ~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G--------~~~~-~~--~~~~~l~~~~~g~i~Vd~~l  142 (283)
                      ++.| +++++ +|++|+.+    .|++++|+++.+|.||+|+|        +.|+ +.  .+.+.. ......+.|+..+
T Consensus       215 ~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~-~~~~~~~kv~~~~  292 (431)
T 3k7m_X          215 QEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE-GHGGQGLKILIHV  292 (431)
T ss_dssp             TTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH-CCCCCEEEEEEEE
T ss_pred             hhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh-CCCcceEEEEEEE
Confidence            3456 89999 89999754    36667888899999999999        6665 21  111111 1122348889888


Q ss_pred             ccCCCCCEEEecccc
Q 023375          143 RVPSVQDVFAVGDCS  157 (283)
Q Consensus       143 ~~~~~~~VfaiGD~a  157 (283)
                      ++ ..+++|+.||+.
T Consensus       293 ~~-~~~~i~~~~d~~  306 (431)
T 3k7m_X          293 RG-AEAGIECVGDGI  306 (431)
T ss_dssp             ES-CCTTEEEEBSSS
T ss_pred             CC-CCcCceEcCCCC
Confidence            88 679999999983

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.36  E-value=2.4e-06  Score=75.81  Aligned_cols=54  Identities=13%  Similarity=0.070  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhh
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVK  124 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~  124 (283)
                      +...+.+.+++.|++++.+ +|++++.+    .|.+.+| ++.+|.||+|+|.....+..
T Consensus       151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~  209 (372)
T 2uzz_A          151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVKDLLP  209 (372)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGGGTST
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHHhhcc
Confidence            3445556677889999998 89988642    3555566 59999999999986655544

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.36  E-value=3.8e-06  Score=79.73  Aligned_cols=93  Identities=20%  Similarity=0.311  Sum_probs=71.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC-----------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------------------------   64 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~-----------------------------   64 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||+..+..                             
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G--------------~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~   88 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLG--------------HDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNY   88 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCC--------------CCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCC
Confidence            368999999999999999999876              7888888752100                             


Q ss_pred             -----------------------------------CC-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEEc-
Q 023375           65 -----------------------------------SF-DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILN-  101 (283)
Q Consensus        65 -----------------------------------~~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~-  101 (283)
                                                         .+ ...+...+.+.+++.||+++.+ +|+++..+     .|++. 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~  168 (591)
T 3i3l_A           89 VKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRR  168 (591)
T ss_dssp             EEECEEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEE
T ss_pred             cccCCcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEec
Confidence                                               00 1345566677778899999999 89998743     46666 


Q ss_pred             CC--cEEEeeEEEEcCCCCCc
Q 023375          102 DG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       102 ~g--~~i~~d~vi~a~G~~~~  120 (283)
                      +|  +++.+|.||.|+|..+.
T Consensus       169 ~G~~~~i~AdlVV~AdG~~S~  189 (591)
T 3i3l_A          169 GGESVTVESDFVIDAGGSGGP  189 (591)
T ss_dssp             TTEEEEEEESEEEECCGGGCH
T ss_pred             CCceEEEEcCEEEECCCCcch
Confidence            66  57999999999998653

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.35  E-value=2.4e-06  Score=81.26  Aligned_cols=93  Identities=19%  Similarity=0.303  Sum_probs=69.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~---------------------------   65 (283)
                      ...|+|||||++|+++|..+++.+              .+|+|+++. ..+..                           
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G--------------~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~   86 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGG--------------LHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMG   86 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHH
T ss_pred             cCCEEEECccHHHHHHHHHHHHCC--------------CcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHH
Confidence            358999999999999999999987              889999875 11100                           


Q ss_pred             ---------------------------CC-HHHHHHHHHHHHhC-CCEEEeCceEEEe--CCe---EEEcCCcEEEeeEE
Q 023375           66 ---------------------------FD-DRLRHYATTQLSKS-GVRLVRGIVKDVD--SQK---LILNDGTEVPYGLL  111 (283)
Q Consensus        66 ---------------------------~~-~~~~~~~~~~l~~~-gV~v~~~~V~~v~--~~~---v~~~~g~~i~~d~v  111 (283)
                                                 .+ ..+...+.+.+++. ||+++.+.|+++.  ++.   |.+.+|+++.+|.|
T Consensus        87 ~~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~V  166 (641)
T 3cp8_A           87 KAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAA  166 (641)
T ss_dssp             HHHHHHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEE
T ss_pred             HHHHhcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEE
Confidence                                       00 13455566667774 9999766887764  443   67788889999999


Q ss_pred             EEcCCCCCc
Q 023375          112 VWSTGVGPS  120 (283)
Q Consensus       112 i~a~G~~~~  120 (283)
                      |+|+|..++
T Consensus       167 VLATG~~s~  175 (641)
T 3cp8_A          167 ILACGTFLN  175 (641)
T ss_dssp             EECCTTCBT
T ss_pred             EECcCCCCC
Confidence            999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.35  E-value=4.3e-07  Score=81.59  Aligned_cols=93  Identities=24%  Similarity=0.322  Sum_probs=68.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C------CCC-----C-CHHHHH-HHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I------LSS-----F-DDRLRH-YATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~------l~~-----~-~~~~~~-~~~~~l~~   80 (283)
                      .+|+|||||++|+.+|..|++.+.            +.+|++++++. .      ++.     . ..++.. ...+.+++
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~------------~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   72 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDG------------ETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQ   72 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCS------------SSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHH
T ss_pred             CcEEEECChHHHHHHHHHHHhhCC------------CCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHh
Confidence            589999999999999999988752            26799998752 1      110     1 122221 24555678


Q ss_pred             CCCEEEeC-ceEEEeC--CeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~--~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .||+++.+ +++.++.  ..|.+.+ +++.+|.+|+|||.+|.
T Consensus        73 ~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~  114 (384)
T 2v3a_A           73 LNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPI  114 (384)
T ss_dssp             TTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEEC
T ss_pred             CCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcC
Confidence            89999988 7888875  4677754 57999999999999876

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.34  E-value=3.6e-06  Score=75.10  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      .+...+.+.+++.|++++.+ +|++++.+  .  |.+.+| ++.+|.||+|+|..+..+...++
T Consensus       151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          151 NCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLN  213 (389)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             HHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhhc
Confidence            44455666777889999998 89988643  2  444444 79999999999987766655544

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.33  E-value=1e-05  Score=71.34  Aligned_cols=160  Identities=16%  Similarity=0.182  Sum_probs=98.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHh--hhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------------------------   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~--~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------------------------   65 (283)
                      ...|+|||||++|+.+|..|++.  +              .+|+|||+. .+...                         
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G--------------~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~G  144 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPD--------------LRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVG  144 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTT--------------SCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCC--------------CEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcC
Confidence            35899999999999999999986  5              899999986 22100                         


Q ss_pred             --C-----------CHHHHHHHHHHHHh-CCCEEEeC-ceEEEe--C-----------------C-----eEEEc-----
Q 023375           66 --F-----------DDRLRHYATTQLSK-SGVRLVRG-IVKDVD--S-----------------Q-----KLILN-----  101 (283)
Q Consensus        66 --~-----------~~~~~~~~~~~l~~-~gV~v~~~-~V~~v~--~-----------------~-----~v~~~-----  101 (283)
                        +           ...+.+.+.+.+.+ .||+++.+ .++++.  +                 +     +|.+.     
T Consensus       145 v~~~~~G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~  224 (344)
T 3jsk_A          145 VPYEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVS  224 (344)
T ss_dssp             CCCEECSSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHH
T ss_pred             CcccccCCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeee
Confidence              0           12333455555666 59999998 777663  1                 1     23321     


Q ss_pred             ---------CCcEEEeeEEEEcCCCCCc--h-h---hhccCCCCCCCC----------ccccCCCcccCCCCCEEEeccc
Q 023375          102 ---------DGTEVPYGLLVWSTGVGPS--T-L---VKSLDLPKSPGG----------RIGIDEWLRVPSVQDVFAVGDC  156 (283)
Q Consensus       102 ---------~g~~i~~d~vi~a~G~~~~--~-~---~~~~~l~~~~~g----------~i~Vd~~l~~~~~~~VfaiGD~  156 (283)
                               +..++.++.||.|+|....  . +   +..+++...-.|          ...|+.+-++  +|++|+.|=.
T Consensus       225 ~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v--~~gl~~~gm~  302 (344)
T 3jsk_A          225 MHHDDQSAMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREI--VPGLIVGGME  302 (344)
T ss_dssp             TTSSSSSCCBCEEEECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEE--ETTEEECGGG
T ss_pred             ccCCcccccCceEEEcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceE--cCCEEEechh
Confidence                     2247999999999998765  1 1   223343210011          2334444454  7999999987


Q ss_pred             cccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++-..  |..-.-++--.-...|+.+|+.|...++
T Consensus       303 ~~~~~--g~~rmgp~fg~m~~sg~~~a~~~~~~~~  335 (344)
T 3jsk_A          303 LSEID--GANRMGPTFGAMALSGVKAAHEAIRVFD  335 (344)
T ss_dssp             HHHHH--TCEECCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhc--CCCCCCcccceeeecCHHHHHHHHHHHH
Confidence            65321  2111112222344779999998887765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.33  E-value=1.4e-06  Score=80.47  Aligned_cols=92  Identities=22%  Similarity=0.333  Sum_probs=67.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-------CC------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-------IL------------------------   63 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-------~l------------------------   63 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||++.       +.                        
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G--------------~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~   69 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLG--------------LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEA   69 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCC--------------CEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999887              8999999863       10                        


Q ss_pred             ----CCC---------C------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCC--cEEEeeEEEEc
Q 023375           64 ----SSF---------D------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYGLLVWS  114 (283)
Q Consensus        64 ----~~~---------~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g--~~i~~d~vi~a  114 (283)
                          ..+         +            ..+.......+++.||+++.+....++++.+.+  .+|  +++.+|.+|+|
T Consensus        70 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlA  149 (476)
T 3lad_A           70 HESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILA  149 (476)
T ss_dssp             HTTSGGGTEECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEEC
T ss_pred             HHHHHhcCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEc
Confidence                000         0            011222334566789999999666677665444  456  57999999999


Q ss_pred             CCCCCc
Q 023375          115 TGVGPS  120 (283)
Q Consensus       115 ~G~~~~  120 (283)
                      ||.+|.
T Consensus       150 tG~~p~  155 (476)
T 3lad_A          150 SGSKPV  155 (476)
T ss_dssp             CCEEEC
T ss_pred             CCCCCC
Confidence            999876

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.33  E-value=1.5e-06  Score=80.54  Aligned_cols=92  Identities=21%  Similarity=0.261  Sum_probs=66.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------C--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------S--------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------~--------------------   64 (283)
                      .+|+|||||+.|+.+|..|++.+              .+|+|||+. .+.         |                    
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G--------------~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~   72 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEG--------------LKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAAN   72 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhC
Confidence            57999999999999999999876              899999985 331         0                    


Q ss_pred             -------CCCH-H-----------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCC------------cEEEeeEE
Q 023375           65 -------SFDD-R-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG------------TEVPYGLL  111 (283)
Q Consensus        65 -------~~~~-~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g------------~~i~~d~v  111 (283)
                             .++. .           +...+.+.+++.||+++.+....++++.+.+  .+|            +++.+|.+
T Consensus        73 gi~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~l  152 (482)
T 1ojt_A           73 GIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNC  152 (482)
T ss_dssp             TCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             CcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEE
Confidence                   0111 1           1112345567789999988433466666554  345            67999999


Q ss_pred             EEcCCCCCc
Q 023375          112 VWSTGVGPS  120 (283)
Q Consensus       112 i~a~G~~~~  120 (283)
                      |+|+|..|.
T Consensus       153 ViAtGs~p~  161 (482)
T 1ojt_A          153 IIAAGSRVT  161 (482)
T ss_dssp             EECCCEEEC
T ss_pred             EECCCCCCC
Confidence            999999876

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.32  E-value=2.4e-06  Score=80.77  Aligned_cols=51  Identities=12%  Similarity=0.000  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEe--C-C---eEEEc--CCc--EEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVD--S-Q---KLILN--DGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~--~-~---~v~~~--~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +...+.+.+++.||+++++ +|+++.  + +   +|++.  +|+  ++.+|.||+|+|....
T Consensus       257 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          257 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence            4455566677889999999 898885  2 2   25554  675  6899999999998653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.31  E-value=4.6e-06  Score=77.98  Aligned_cols=92  Identities=18%  Similarity=0.262  Sum_probs=67.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC--------CCC----------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--------ILS----------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~--------~l~----------------------   64 (283)
                      .+|+|||||+.|+.+|..|++.+              .+|+|||+..        .+.                      
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G--------------~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~   98 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYG--------------KKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQ   98 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHH
Confidence            58999999999999999999887              8999999731        000                      


Q ss_pred             ----------------CCC-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCCc--EEEeeEEE
Q 023375           65 ----------------SFD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLV  112 (283)
Q Consensus        65 ----------------~~~-~-----------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~d~vi  112 (283)
                                      ..+ +           .+.......+++.+|+++.+.+..++++.+.+  .+|+  ++.+|.+|
T Consensus        99 ~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lV  178 (519)
T 3qfa_A           99 ALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFL  178 (519)
T ss_dssp             HHHHHHHTTBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEE
T ss_pred             HHHHHHhcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEE
Confidence                            000 0           11112234567789999999877788886655  3454  79999999


Q ss_pred             EcCCCCCc
Q 023375          113 WSTGVGPS  120 (283)
Q Consensus       113 ~a~G~~~~  120 (283)
                      +|||.+|.
T Consensus       179 iATGs~p~  186 (519)
T 3qfa_A          179 IATGERPR  186 (519)
T ss_dssp             ECCCEEEC
T ss_pred             EECCCCcC
Confidence            99998876

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.31  E-value=3.3e-06  Score=74.06  Aligned_cols=160  Identities=14%  Similarity=0.164  Sum_probs=95.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHh--hhhHHHhhcCCCCCccEEEEEeCC-CCCCC--------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEAN-EILSS--------------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~--~~~~~~~~~~~~~~~~~V~li~~~-~~l~~--------------------------   65 (283)
                      .+|+|||||++|+.+|..|++.  +              .+|+|+|+. .....                          
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g--------------~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv  131 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPD--------------LKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEI  131 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTT--------------SCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCC--------------CeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCc
Confidence            3899999999999999999987  5              899999985 22100                          


Q ss_pred             ------------CCHHHHHHHHHHHHh-CCCEEEeC-ceEEEeC----C-------eEEEc--------------CCcEE
Q 023375           66 ------------FDDRLRHYATTQLSK-SGVRLVRG-IVKDVDS----Q-------KLILN--------------DGTEV  106 (283)
Q Consensus        66 ------------~~~~~~~~~~~~l~~-~gV~v~~~-~V~~v~~----~-------~v~~~--------------~g~~i  106 (283)
                                  ....+...+.+.+.+ .||+++.+ +|+++..    +       +|.+.              ++.++
T Consensus       132 ~~~~~g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I  211 (326)
T 2gjc_A          132 PYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVI  211 (326)
T ss_dssp             CCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEE
T ss_pred             ccccCCCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEE
Confidence                        012334455555666 49999988 7887731    1       23331              34579


Q ss_pred             Ee---------------eEEEEcCCCCCc--hhhhc----cCCC----------CCCCCccccCCCcccCCCCCEEEecc
Q 023375          107 PY---------------GLLVWSTGVGPS--TLVKS----LDLP----------KSPGGRIGIDEWLRVPSVQDVFAVGD  155 (283)
Q Consensus       107 ~~---------------d~vi~a~G~~~~--~~~~~----~~l~----------~~~~g~i~Vd~~l~~~~~~~VfaiGD  155 (283)
                      .+               +.||.|+|..+.  .++..    ++..          .+..-...|+.+-...-+|++|+.|-
T Consensus       212 ~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~  291 (326)
T 2gjc_A          212 ELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGM  291 (326)
T ss_dssp             EESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTH
T ss_pred             EEeeccccccccccccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECCh
Confidence            99               999999998764  22211    1111          00001133343434224899999998


Q ss_pred             ccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          156 CSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       156 ~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      .++...  |..-.-++--.-...|+.+|+.|...+
T Consensus       292 ~~~~~~--~~~r~g~~fg~m~~sg~~~a~~~~~~~  324 (326)
T 2gjc_A          292 EVAELD--GLNRMGPTFGAMALSGVHAAEQILKHF  324 (326)
T ss_dssp             HHHHHH--TCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc--CCCCCChhhhhhhhhhHHHHHHHHHHh
Confidence            764322  110111222234477999999887665

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.28  E-value=6.3e-06  Score=79.51  Aligned_cols=56  Identities=13%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             HHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCchhhhccCCC
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP  129 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~  129 (283)
                      +.+.+++.|++++.+ +|+++..  +.  |.+.+|+++.+|.||+|+|.....+....+++
T Consensus       423 L~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~lp  483 (676)
T 3ps9_A          423 VLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLP  483 (676)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGGCSTTTTTCS
T ss_pred             HHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchhccccccCCc
Confidence            444556789999999 8988853  33  55667788999999999998765554444443

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.27  E-value=5.3e-06  Score=78.83  Aligned_cols=94  Identities=14%  Similarity=0.273  Sum_probs=66.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CCC-------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LSS-------------------   65 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~~-------------------   65 (283)
                      ...+|+|||||++|+.+|..|++.+              .+|++||+. ..       +..                   
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g--------------~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~  171 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYG--------------AKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLL  171 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHH
T ss_pred             ccccEEEECCCccHHHHHHHHHhCC--------------CeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHH
Confidence            3468999999999999999999887              899999962 10       100                   


Q ss_pred             -------------CC--------HHHHHHH-----------HHHHHhCCCEEEeCceEEEeCCeEEE--cCC--cEEEee
Q 023375           66 -------------FD--------DRLRHYA-----------TTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYG  109 (283)
Q Consensus        66 -------------~~--------~~~~~~~-----------~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g--~~i~~d  109 (283)
                                   ++        +.+.+++           ...+.+.+|+++.+..+.++...+.+  .+|  +++.+|
T Consensus       172 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d  251 (598)
T 2x8g_A          172 SHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGN  251 (598)
T ss_dssp             HHHHHHHHHTTCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEE
T ss_pred             HHHHhhHHhCCccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeC
Confidence                         00        1111111           22356779999988777777776655  356  469999


Q ss_pred             EEEEcCCCCCc
Q 023375          110 LLVWSTGVGPS  120 (283)
Q Consensus       110 ~vi~a~G~~~~  120 (283)
                      .||+|||.+|.
T Consensus       252 ~lviAtGs~p~  262 (598)
T 2x8g_A          252 KIILATGERPK  262 (598)
T ss_dssp             EEEECCCEEEC
T ss_pred             EEEEeCCCCCC
Confidence            99999998776

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.27  E-value=2.9e-06  Score=74.67  Aligned_cols=38  Identities=18%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             hCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCC
Q 023375           80 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      +.|++++++ +|++|+.+    .|++.+|+++.+|.||+|++.
T Consensus       121 ~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          121 ESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             hcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            348999999 89998643    366678877899999999973

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.27  E-value=1.6e-06  Score=80.09  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=65.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------------------------C
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------------------------S   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------------------------~   65 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||+. .+..                            .
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G--------------~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~   71 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLG--------------FNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQK   71 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999999876              899999985 3210                            0


Q ss_pred             ----------CC-HH-----------HHHHHHHHHHhCCCEEEeCceEEEeCCeEE--EcCC--cE------EEeeEEEE
Q 023375           66 ----------FD-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLI--LNDG--TE------VPYGLLVW  113 (283)
Q Consensus        66 ----------~~-~~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~--~~~g--~~------i~~d~vi~  113 (283)
                                ++ +.           +...+.+.+++.||+++.+....++++.+.  +.+|  ++      +.+|.+|+
T Consensus        72 ~gi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lVi  151 (478)
T 1v59_A           72 RGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIV  151 (478)
T ss_dssp             GTEEECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEE
T ss_pred             cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEE
Confidence                      00 01           111234556778999999843223555544  3456  56      99999999


Q ss_pred             cCCCCCc
Q 023375          114 STGVGPS  120 (283)
Q Consensus       114 a~G~~~~  120 (283)
                      |+|.+|.
T Consensus       152 AtGs~p~  158 (478)
T 1v59_A          152 ATGSEVT  158 (478)
T ss_dssp             CCCEEEC
T ss_pred             CcCCCCC
Confidence            9999875

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.27  E-value=4.9e-06  Score=78.60  Aligned_cols=51  Identities=10%  Similarity=0.021  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEe--C-C---eEEEc--CCc--EEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVD--S-Q---KLILN--DGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~--~-~---~v~~~--~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +...+.+.+++.||+++++ +|+++.  + +   +|++.  +|+  ++.+|.||+|+|....
T Consensus       252 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          252 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            3345556677889999999 888874  2 3   25554  675  6899999999998764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.27  E-value=4.7e-06  Score=78.81  Aligned_cols=91  Identities=24%  Similarity=0.343  Sum_probs=69.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------------------   63 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------------------------------   63 (283)
                      ..|+|||||++|+.+|.+|++.+              .+|+|||+. ...                              
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G--------------~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~  115 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGG--------------VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQ  115 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTT--------------CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCc
Confidence            47999999999999999999887              888888864 110                              


Q ss_pred             -------C-----C---------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEE--cCC-cEEE
Q 023375           64 -------S-----S---------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLIL--NDG-TEVP  107 (283)
Q Consensus        64 -------~-----~---------------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~--~~g-~~i~  107 (283)
                             .     .               + ...+...+.+.+++.|++++.+ +|++++.+    .|++  .+| +++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~  195 (570)
T 3fmw_A          116 VAKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVR  195 (570)
T ss_dssp             BCSBCCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEE
T ss_pred             ccCCceeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEE
Confidence                   0     0               0 1345666777777789999999 89988654    3555  577 6899


Q ss_pred             eeEEEEcCCCCC
Q 023375          108 YGLLVWSTGVGP  119 (283)
Q Consensus       108 ~d~vi~a~G~~~  119 (283)
                      +|.||.|.|...
T Consensus       196 a~~vV~ADG~~S  207 (570)
T 3fmw_A          196 ARYGVGCDGGRS  207 (570)
T ss_dssp             ESEEEECSCSSC
T ss_pred             eCEEEEcCCCCc
Confidence            999999999876

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.26  E-value=4.7e-06  Score=77.20  Aligned_cols=93  Identities=20%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---------CCC---------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---------EIL---------------------   63 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---------~~l---------------------   63 (283)
                      ...|+|||||+.|+.+|..|++.+              .+|+|||+.         .+.                     
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G--------------~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~   71 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLG--------------KKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLG   71 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHH
Confidence            358999999999999999999887              899999952         010                     


Q ss_pred             ----------------CCCC-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCC--cEEEeeEE
Q 023375           64 ----------------SSFD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYGLL  111 (283)
Q Consensus        64 ----------------~~~~-~-----------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g--~~i~~d~v  111 (283)
                                      +.++ +           .+.......+++.+|+++.+.+..++++.+.+  .+|  .++.+|.+
T Consensus        72 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~l  151 (488)
T 3dgz_A           72 GMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHI  151 (488)
T ss_dssp             HHHHHHHHTTCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEE
T ss_pred             HHHHHHHhcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEE
Confidence                            0111 0           11122334567789999988777777776554  455  47999999


Q ss_pred             EEcCCCCCc
Q 023375          112 VWSTGVGPS  120 (283)
Q Consensus       112 i~a~G~~~~  120 (283)
                      |+|||.+|.
T Consensus       152 ViATGs~p~  160 (488)
T 3dgz_A          152 VIATGGRPR  160 (488)
T ss_dssp             EECCCEEEC
T ss_pred             EEcCCCCCC
Confidence            999998876

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.24  E-value=4.3e-06  Score=75.28  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=64.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------C-C---HHH-----------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------F-D---DRL-----------   70 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------~-~---~~~-----------   70 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|+|+. .....       + +   ...           
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~   91 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNG--------------IDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYY   91 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHH
Confidence            358999999999999999999877              899999985 32110       0 0   000           


Q ss_pred             -----------------------------------HHHHHHHHHhC--CCEEEeC-ceEEEeCC----eEEEcCCcEEEe
Q 023375           71 -----------------------------------RHYATTQLSKS--GVRLVRG-IVKDVDSQ----KLILNDGTEVPY  108 (283)
Q Consensus        71 -----------------------------------~~~~~~~l~~~--gV~v~~~-~V~~v~~~----~v~~~~g~~i~~  108 (283)
                                                         +..+.+.|.+.  +++++.+ +|++++.+    .|++++|+++.+
T Consensus        92 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a  171 (398)
T 2xdo_A           92 DLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETA  171 (398)
T ss_dssp             HHCBCCCEEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEE
T ss_pred             HhhcccceEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEec
Confidence                                               00112222221  3577888 88888643    466788888999


Q ss_pred             eEEEEcCCCCCc
Q 023375          109 GLLVWSTGVGPS  120 (283)
Q Consensus       109 d~vi~a~G~~~~  120 (283)
                      |.||.|.|..+.
T Consensus       172 d~vV~AdG~~S~  183 (398)
T 2xdo_A          172 DLVILANGGMSK  183 (398)
T ss_dssp             SEEEECSCTTCS
T ss_pred             CEEEECCCcchh
Confidence            999999998765

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.22  E-value=6.3e-07  Score=86.70  Aligned_cols=86  Identities=24%  Similarity=0.306  Sum_probs=66.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------CCC--CHHHHHHHHHHHHh
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------SSF--DDRLRHYATTQLSK   80 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------~~~--~~~~~~~~~~~l~~   80 (283)
                      ..++|+|||||++|+++|..|++.+              .+|+|||++ .+.         |..  ...+..+..+.+.+
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G--------------~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~  455 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRG--------------YDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAE  455 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHH
Confidence            4579999999999999999999887              899999996 331         221  24566777888888


Q ss_pred             C-CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 S-GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~-gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      . ||+++.+ .++        ..+++++.+|.+|+|+|..|.
T Consensus       456 ~~gv~~~~~~~v~--------~~~~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          456 LPNVEIYRESPMT--------GDDIVEFGFEHVITATGATWR  489 (690)
T ss_dssp             CTTEEEESSCCCC--------HHHHHHTTCCEEEECCCEEEC
T ss_pred             cCCCEEEECCeec--------HHHHhhcCCCEEEEcCCCccc
Confidence            7 9999988 432        234456789999999999854

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.22  E-value=9e-06  Score=75.19  Aligned_cols=94  Identities=21%  Similarity=0.293  Sum_probs=67.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---C-------C--------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---E-------I--------------------   62 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~-------~--------------------   62 (283)
                      ...+|+|||||+.|+.+|..|++.+              .+|+|||+.   .       +                    
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G--------------~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~   73 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNG--------------ARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASL   73 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--------------CEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHH
Confidence            3468999999999999999999887              899999831   0       0                    


Q ss_pred             ------------C-----CCCC-HHH-----------HHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCCc-EEEeeE
Q 023375           63 ------------L-----SSFD-DRL-----------RHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT-EVPYGL  110 (283)
Q Consensus        63 ------------l-----~~~~-~~~-----------~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~-~i~~d~  110 (283)
                                  +     +.++ +.+           .......+++.+|+++.+...-++++.+.+  .+|+ ++.+|.
T Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~  153 (483)
T 3dgh_A           74 LGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQT  153 (483)
T ss_dssp             HHHHHHHHHHTTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEE
T ss_pred             HHHHHHHHHhcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCE
Confidence                        0     0111 111           112234467789999988766677776554  4554 799999


Q ss_pred             EEEcCCCCCc
Q 023375          111 LVWSTGVGPS  120 (283)
Q Consensus       111 vi~a~G~~~~  120 (283)
                      +|+|||.+|.
T Consensus       154 lviATGs~p~  163 (483)
T 3dgh_A          154 FVIAVGGRPR  163 (483)
T ss_dssp             EEECCCEEEC
T ss_pred             EEEeCCCCcC
Confidence            9999998876

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.21  E-value=4.5e-06  Score=77.52  Aligned_cols=92  Identities=20%  Similarity=0.275  Sum_probs=65.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC---------------------------C--
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------S--   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~---------------------------~--   65 (283)
                      .+|+|||||+.|+.+|..|++.+              .+|+|||++.+..                           .  
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G--------------~~V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g   74 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHT--------------DKVVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFG   74 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTC--------------SCEEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcC
Confidence            58999999999999999999877              8999999865211                           0  


Q ss_pred             -------CC-HHHHHHHH-----------HHHHhC-CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           66 -------FD-DRLRHYAT-----------TQLSKS-GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        66 -------~~-~~~~~~~~-----------~~l~~~-gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                             ++ +.+.++..           ..+... +++++.+...-+++..|.+++++++.+|.+|+|||.+|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~  149 (492)
T 3ic9_A           75 IQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPN  149 (492)
T ss_dssp             EECSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECC
T ss_pred             cCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCc
Confidence                   11 12222221           112222 455666654445677888888899999999999999887

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.21  E-value=7.9e-06  Score=73.17  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=63.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC---C----CCHHHH---------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---S----FDDRLR---------------   71 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~---~----~~~~~~---------------   71 (283)
                      ++|+|||||++|+-+|..|++.+              .+|+|+|+. .+-.   .    +.+...               
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G--------------~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~   67 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHG--------------IKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAF   67 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHh
Confidence            68999999999999999999987              899999875 2211   0    111111               


Q ss_pred             --------------------------------------------HHHHHHHH-hCCCEEEeC-ceEEEeC--C---eEEE
Q 023375           72 --------------------------------------------HYATTQLS-KSGVRLVRG-IVKDVDS--Q---KLIL  100 (283)
Q Consensus        72 --------------------------------------------~~~~~~l~-~~gV~v~~~-~V~~v~~--~---~v~~  100 (283)
                                                                  ..+.+.|. ..+..++.+ ++++++.  +   .|++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~  147 (412)
T 4hb9_A           68 EEASRYIGGQSRFYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFF  147 (412)
T ss_dssp             HHHCEEECCCCEEECTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEE
T ss_pred             hhhhcccCcceeEecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEE
Confidence                                                        11222222 234457777 7777753  2   4778


Q ss_pred             cCCcEEEeeEEEEcCCCCCc
Q 023375          101 NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       101 ~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +||+++.+|.||-|-|....
T Consensus       148 ~dG~~~~adlvVgADG~~S~  167 (412)
T 4hb9_A          148 ADGSHENVDVLVGADGSNSK  167 (412)
T ss_dssp             TTSCEEEESEEEECCCTTCH
T ss_pred             CCCCEEEeeEEEECCCCCcc
Confidence            89999999999999998654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.21  E-value=1.6e-05  Score=73.86  Aligned_cols=95  Identities=19%  Similarity=0.260  Sum_probs=70.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC--------------------------
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS--------------------------   64 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~--------------------------   64 (283)
                      ....+|+|||||++|+.+|..|++.+              .+|+|||+. ...+                          
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G--------------~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~   75 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGG--------------VDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGP   75 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHh
Confidence            34568999999999999999999877              677777653 1100                          


Q ss_pred             ---------------------CC-------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCc---EEEe
Q 023375           65 ---------------------SF-------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGT---EVPY  108 (283)
Q Consensus        65 ---------------------~~-------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~---~i~~  108 (283)
                                           ..       ...+...+.+.+.+.|++++.+ +|++++.+    .|++.+++   ++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a  155 (499)
T 2qa2_A           76 VETSTQGHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTT  155 (499)
T ss_dssp             CCEESEEEETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEE
T ss_pred             ccccccceecceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEe
Confidence                                 00       1345666677777889999999 89988643    35566664   7999


Q ss_pred             eEEEEcCCCCCc
Q 023375          109 GLLVWSTGVGPS  120 (283)
Q Consensus       109 d~vi~a~G~~~~  120 (283)
                      |.||-|.|....
T Consensus       156 ~~vVgADG~~S~  167 (499)
T 2qa2_A          156 RYVVGCDGGRST  167 (499)
T ss_dssp             EEEEECCCTTCH
T ss_pred             CEEEEccCcccH
Confidence            999999998764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.19  E-value=2.6e-06  Score=78.11  Aligned_cols=92  Identities=16%  Similarity=0.149  Sum_probs=68.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC-C----C------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-S----S------------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l-~----~------------------------   65 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|+.... .    .                        
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G--------------~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~   72 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRG--------------LKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELEN   72 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSS--------------CCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHh
Confidence            58999999999999999999876              777777764210 0    0                        


Q ss_pred             ------------------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEc---CCc--EEEee
Q 023375           66 ------------------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILN---DGT--EVPYG  109 (283)
Q Consensus        66 ------------------------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~---~g~--~i~~d  109 (283)
                                              + ...+.+.+.+.+.+.|++++.+ +|+++..  +.   |++.   +|+  ++.+|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad  152 (453)
T 3atr_A           73 KINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSK  152 (453)
T ss_dssp             EEEEEEEECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECS
T ss_pred             hhcceEEECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcC
Confidence                                    0 1245566677777889999999 8888753  33   4454   676  79999


Q ss_pred             EEEEcCCCCCc
Q 023375          110 LLVWSTGVGPS  120 (283)
Q Consensus       110 ~vi~a~G~~~~  120 (283)
                      .||.|+|..+.
T Consensus       153 ~VV~AdG~~s~  163 (453)
T 3atr_A          153 VVVEATGYSRS  163 (453)
T ss_dssp             EEEECCGGGCT
T ss_pred             EEEECcCCchh
Confidence            99999998654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.19  E-value=1.4e-05  Score=71.57  Aligned_cols=55  Identities=18%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             HHHHHHHHhCCCEEEeC-ceEEEeC--CeE--EEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           72 HYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~-~V~~v~~--~~v--~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      ..+.+.+++.|++++.+ +|+++..  +.+  .+.+ .++.+|.||+|+|.....+...++
T Consensus       157 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~-g~i~a~~VV~A~G~~s~~l~~~~g  216 (397)
T 2oln_A          157 AALFTLAQAAGATLRAGETVTELVPDADGVSVTTDR-GTYRAGKVVLACGPYTNDLLEPLG  216 (397)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESS-CEEEEEEEEECCGGGHHHHHGGGT
T ss_pred             HHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECC-CEEEcCEEEEcCCcChHHHhhhcC
Confidence            34455566789999998 8988853  333  3344 479999999999987555555544

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.18  E-value=5.1e-06  Score=75.03  Aligned_cols=58  Identities=19%  Similarity=0.316  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceE---------EEeCC--e--EEEcCCcEEEeeEEEEcCCCCCchhhh-ccCC
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVK---------DVDSQ--K--LILNDGTEVPYGLLVWSTGVGPSTLVK-SLDL  128 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~---------~v~~~--~--v~~~~g~~i~~d~vi~a~G~~~~~~~~-~~~l  128 (283)
                      +...+.+.+++.|++++.+ +|+         ++..+  .  |.+.+| ++.+|.||.|+|.....+.. .+++
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~  246 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGL  246 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCC
Confidence            4455666677889999998 788         77543  2  444444 79999999999987655555 4443

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.18  E-value=1.5e-05  Score=74.67  Aligned_cols=49  Identities=20%  Similarity=0.277  Sum_probs=37.8

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEeC--C----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           72 HYATTQLSKSGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~~V~~v~~--~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+.+.+++.||+++.++|+++..  +    .|++.+|+++.+|.||.|+|..+.
T Consensus       169 ~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            344455567899999888888753  2    466778888999999999998765

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.18  E-value=1.3e-05  Score=74.73  Aligned_cols=92  Identities=20%  Similarity=0.259  Sum_probs=67.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------C---------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S---------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~---------------------   64 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||+..+.         |                     
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G--------------~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~   73 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRG--------------HRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGF   73 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCC--------------CCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCC
Confidence            58999999999999999999876              677777764210         0                     


Q ss_pred             ---------------------------------CC-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEE--cC
Q 023375           65 ---------------------------------SF-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLIL--ND  102 (283)
Q Consensus        65 ---------------------------------~~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~--~~  102 (283)
                                                       .+ ...+.+.+.+.+++.||+++.+ +|+++..  +   +|++  .+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~d  153 (512)
T 3e1t_A           74 PIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTE  153 (512)
T ss_dssp             CEECEEEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSS
T ss_pred             ccccCceEEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCC
Confidence                                             00 1244556667777899999999 8888754  3   2444  35


Q ss_pred             Cc--EEEeeEEEEcCCCCCc
Q 023375          103 GT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus       103 g~--~i~~d~vi~a~G~~~~  120 (283)
                      |+  ++.+|.||.|+|....
T Consensus       154 G~~~~i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          154 GVELMAHARFIVDASGNRTR  173 (512)
T ss_dssp             SCEEEEEEEEEEECCCTTCS
T ss_pred             CCEEEEEcCEEEECCCcchH
Confidence            64  7999999999998764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.17  E-value=2.5e-06  Score=82.26  Aligned_cols=83  Identities=24%  Similarity=0.357  Sum_probs=63.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------CCCC--HHHHHHHHHHHHh
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------SSFD--DRLRHYATTQLSK   80 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------~~~~--~~~~~~~~~~l~~   80 (283)
                      ..++|+|||||++|+++|..|++.+              .+|+|||+. .+.         |...  .+...+..+.+++
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g--------------~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARG--------------HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEV  437 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999876              899999986 331         2111  2344566777888


Q ss_pred             CCCEEEeC-ceEEEeCCeEEEcCCcEE-EeeEEEEcCCCCCc
Q 023375           81 SGVRLVRG-IVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~~v~~~~g~~i-~~d~vi~a~G~~~~  120 (283)
                      .||+++++ .|+.           ..+ .+|.||+|||.+|.
T Consensus       438 ~gv~~~~~~~v~~-----------~~~~~~d~lviAtG~~p~  468 (671)
T 1ps9_A          438 TGVTLKLNHTVTA-----------DQLQAFDETILASGIVPR  468 (671)
T ss_dssp             HTCEEEESCCCCS-----------SSSCCSSEEEECCCEEEC
T ss_pred             cCCEEEeCcEecH-----------HHhhcCCEEEEccCCCcC
Confidence            99999998 4432           123 79999999999876

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.16  E-value=1.5e-05  Score=74.20  Aligned_cols=95  Identities=21%  Similarity=0.232  Sum_probs=69.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC--------------------------
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS--------------------------   64 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~--------------------------   64 (283)
                      ....+|+|||||++|+.+|..|++.+              .+|+|||+. ....                          
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G--------------~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~   74 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAG--------------VEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGE   74 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCS
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHh
Confidence            34568999999999999999999877              677777753 1100                          


Q ss_pred             ---------------------C------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEcCCc---EEEe
Q 023375           65 ---------------------S------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGT---EVPY  108 (283)
Q Consensus        65 ---------------------~------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~---~i~~  108 (283)
                                           .      + ...+.+.+.+.+++.|++++.+ +|++++.  +.  |++++++   ++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a  154 (500)
T 2qa1_A           75 VETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRA  154 (500)
T ss_dssp             CCBCCEEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             ccccccccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEe
Confidence                                 0      0 1245566667777889999999 8988853  43  4555654   7999


Q ss_pred             eEEEEcCCCCCc
Q 023375          109 GLLVWSTGVGPS  120 (283)
Q Consensus       109 d~vi~a~G~~~~  120 (283)
                      |.||-|.|....
T Consensus       155 ~~vVgADG~~S~  166 (500)
T 2qa1_A          155 AYLVGCDGGRSS  166 (500)
T ss_dssp             SEEEECCCTTCH
T ss_pred             CEEEECCCcchH
Confidence            999999998764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.16  E-value=1.1e-05  Score=75.68  Aligned_cols=51  Identities=20%  Similarity=0.169  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----e--EEEcCC---cEEEeeEEEEcCCCCC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----K--LILNDG---TEVPYGLLVWSTGVGP  119 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~----~--v~~~~g---~~i~~d~vi~a~G~~~  119 (283)
                      .+...+.+.+++.|++++.+ +|++++  ++    +  +++.++   +++.+|.||.|.|...
T Consensus       121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            45566777778889999999 888885  33    3  445555   6899999999999876

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.15  E-value=1.1e-05  Score=76.42  Aligned_cols=51  Identities=10%  Similarity=0.022  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEe-C--C---eEEEc--CCc--EEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVD-S--Q---KLILN--DGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~-~--~---~v~~~--~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +...+.+.+++.||+++++ +|+++. .  +   +|++.  +|+  ++.+|.||+|+|..+.
T Consensus       257 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          257 VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            4455566677889999999 898884 2  2   35554  564  6899999999998764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.15  E-value=1.4e-05  Score=75.88  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C----eEEEc------CC---------cEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q----KLILN------DG---------TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~----~v~~~------~g---------~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+.+.+++.||+++.+ +|+++..  +    +|.+.      +|         .++.+|.||.|.|..+.
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            45666777788889999999 8988752  2    25554      33         68999999999999875

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.14  E-value=1.5e-05  Score=77.06  Aligned_cols=56  Identities=11%  Similarity=0.135  Sum_probs=39.9

Q ss_pred             HHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCc-EEEeeEEEEcCCCCCchhhhccCCC
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGT-EVPYGLLVWSTGVGPSTLVKSLDLP  129 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~-~i~~d~vi~a~G~~~~~~~~~~~l~  129 (283)
                      +.+.+++.|++++.+ +|+++..+    .|.+.+|+ ++.+|.||+|+|.....+....+++
T Consensus       418 L~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lp  479 (689)
T 3pvc_A          418 LMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLP  479 (689)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTTCSTTTTTSC
T ss_pred             HHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchhccccccCCc
Confidence            344456789999999 89988643    35666776 8999999999998766554444443

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.11  E-value=5.4e-06  Score=73.62  Aligned_cols=56  Identities=7%  Similarity=0.054  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      ...+.+.+++.|++++.+ +|+++..  +  .|++.+| ++.+|.||+|+|.....+...++
T Consensus       157 ~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g  217 (381)
T 3nyc_A          157 HQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAG  217 (381)
T ss_dssp             HHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhC
Confidence            344556667889999998 8888853  3  3555555 89999999999987655554443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.06  E-value=2.2e-05  Score=70.89  Aligned_cols=92  Identities=23%  Similarity=0.321  Sum_probs=65.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCC-CCCCC-----CC--------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EILSS-----FD--------------------   67 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~-~~l~~-----~~--------------------   67 (283)
                      .+|+|||||++|+.+|..|++.+              .+ |+|+|+. .+.+.     +.                    
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G--------------~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~   70 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAG--------------IGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATA   70 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhC
Confidence            58999999999999999999877              77 8888875 22100     00                    


Q ss_pred             ------------------------------------HHHHHHHHHHHHh-CC-CEEEeC-ceEEEeC-C--eEEEcC---
Q 023375           68 ------------------------------------DRLRHYATTQLSK-SG-VRLVRG-IVKDVDS-Q--KLILND---  102 (283)
Q Consensus        68 ------------------------------------~~~~~~~~~~l~~-~g-V~v~~~-~V~~v~~-~--~v~~~~---  102 (283)
                                                          ..+.+.+.+.+.+ .| ++++.+ +|++++. +  .|++.+   
T Consensus        71 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~~~~v~v~~~~~~~  150 (410)
T 3c96_A           71 IPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGH  150 (410)
T ss_dssp             EEECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETT
T ss_pred             CCcceEEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEecCCccEEEEecCCC
Confidence                                                1344455555655 35 689988 7887753 3  355554   


Q ss_pred             C--cEEEeeEEEEcCCCCCc
Q 023375          103 G--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus       103 g--~~i~~d~vi~a~G~~~~  120 (283)
                      |  +++.+|.||.|.|..+.
T Consensus       151 g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          151 GKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             SCEEEEEESEEEECCCTTCH
T ss_pred             CCceEEecCEEEECCCccch
Confidence            7  57999999999998765

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.06  E-value=9.4e-06  Score=81.36  Aligned_cols=93  Identities=19%  Similarity=0.165  Sum_probs=67.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---CC-----C----CHHHHHHHHHHHHh
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---SS-----F----DDRLRHYATTQLSK   80 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---~~-----~----~~~~~~~~~~~l~~   80 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|||+. .+.   ..     +    ..+......+.+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G--------------~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~  193 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSG--------------ARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAE  193 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhh
Confidence            468999999999999999999876              899999986 331   01     1    12344455566666


Q ss_pred             C-CCEEEeC-ceEEEeCCe-E----------EE--------cCCcEEEeeEEEEcCCCCCc
Q 023375           81 S-GVRLVRG-IVKDVDSQK-L----------IL--------NDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~-gV~v~~~-~V~~v~~~~-v----------~~--------~~g~~i~~d~vi~a~G~~~~  120 (283)
                      . +|+++.+ +|.++..+. +          .+        .++.++.+|.||+|||..|.
T Consensus       194 ~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~  254 (965)
T 2gag_A          194 AEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHER  254 (965)
T ss_dssp             STTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEEC
T ss_pred             cCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccC
Confidence            5 9999998 788876542 1          11        11236899999999999775

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.06  E-value=1.7e-05  Score=78.31  Aligned_cols=57  Identities=14%  Similarity=0.238  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD  127 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~  127 (283)
                      +...+.+.+++.|++++.+ +|+++..  +.   |.+.+| ++.+|.||+|+|.....+...++
T Consensus       153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g  215 (830)
T 1pj5_A          153 AVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIG  215 (830)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhC
Confidence            3444556667889999998 8988863  33   455566 79999999999987655544443

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.05  E-value=1.3e-06  Score=85.15  Aligned_cols=87  Identities=21%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------CCCC--HHHHHHHHHHHHh
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------SSFD--DRLRHYATTQLSK   80 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------~~~~--~~~~~~~~~~l~~   80 (283)
                      ..++|+|||||++|+++|..|++.+              .+|+|||+. .+.         |...  ..+.++..+.++.
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G--------------~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~  453 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESG--------------YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITK  453 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHH
Confidence            3478999999999999999999887              899999986 432         1111  2333444444433


Q ss_pred             C------CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           81 S------GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        81 ~------gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .      +|++..++       .++++++.++.+|.||+|||..|.
T Consensus       454 ~~~~~~~~v~i~~~~-------~v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          454 LLKKNKESQLALGQK-------PMTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             HHHHSTTCEEECSCC-------CCCHHHHHTSCCSEEEECCCEEEC
T ss_pred             hhcccCCceEEEeCe-------EEehhhccccCCCEEEEcCCCCcc
Confidence            2      55655441       233344556889999999999853

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.98  E-value=5.7e-06  Score=74.04  Aligned_cols=85  Identities=21%  Similarity=0.381  Sum_probs=64.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHh--hhhHHHhhcCCCCCccEEEEEeCC-CC----------------------C-CC---
Q 023375           15 LHCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEAN-EI----------------------L-SS---   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~--~~~~~~~~~~~~~~~~~V~li~~~-~~----------------------l-~~---   65 (283)
                      ++|+|||||++|+.+|..|++.  +              .+|+|+|+. .+                      . ..   
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G--------------~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   66 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPL--------------WAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPER   66 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTT--------------SEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCC--------------CCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHH
Confidence            4799999999999999999987  5              788888875 22                      0 00   


Q ss_pred             -----------------------------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcC
Q 023375           66 -----------------------------FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWST  115 (283)
Q Consensus        66 -----------------------------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~  115 (283)
                                                   ....+.+.+.+.+++.|++++.+ +|++++..       +++.+|.||.|.
T Consensus        67 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------~~~~ad~vV~Ad  139 (381)
T 3c4a_A           67 LNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------PLADYDLVVLAN  139 (381)
T ss_dssp             GCCEEECCEEEEESSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------CGGGCSEEEECC
T ss_pred             HhhccccceEEEeCCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------ccccCCEEEECC
Confidence                                         01356677777788889999998 78877643       135799999999


Q ss_pred             CCCCc
Q 023375          116 GVGPS  120 (283)
Q Consensus       116 G~~~~  120 (283)
                      |..+.
T Consensus       140 G~~S~  144 (381)
T 3c4a_A          140 GVNHK  144 (381)
T ss_dssp             GGGGG
T ss_pred             CCCch
Confidence            97653

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.98  E-value=3.8e-06  Score=77.99  Aligned_cols=91  Identities=21%  Similarity=0.350  Sum_probs=63.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------CC---CHHHHHHHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------SF---DDRLRHYATTQLS   79 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------~~---~~~~~~~~~~~l~   79 (283)
                      ..+|+|||||++|+.+|.+|++.               .+|+|||++ .+..          .+   ..++...+.+.+ 
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~---------------~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-  171 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY---------------LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-  171 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT---------------CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-
T ss_pred             cCCEEEECccHHHHHHHHHHHhc---------------CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-
Confidence            35899999999999999999853               589999986 3310          11   122333333334 


Q ss_pred             hCCCEEEeC-ceEEEeCC--eEEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375           80 KSGVRLVRG-IVKDVDSQ--KLIL---NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~--~v~~---~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +.|++++.+ .|.+++.+  .+..   ++++  ++.+|.+|+|+|..|.
T Consensus       172 ~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~  220 (493)
T 1y56_A          172 NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS  220 (493)
T ss_dssp             CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC
T ss_pred             hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc
Confidence            569999988 78777543  2222   4454  6899999999998776

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=97.93  E-value=6.3e-05  Score=68.30  Aligned_cols=55  Identities=16%  Similarity=0.196  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhCCCEEEeC----ceEEEe--CCe---EEEcCCcEEEeeEEEEcCCCCCchhh
Q 023375           69 RLRHYATTQLSKSGVRLVRG----IVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPSTLV  123 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~----~V~~v~--~~~---v~~~~g~~i~~d~vi~a~G~~~~~~~  123 (283)
                      .+...+.+.+++.|++++++    +|+++.  ++.   |++.+|+++.+|.||+|+|.....+.
T Consensus       162 ~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~  225 (438)
T 3dje_A          162 NALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFL  225 (438)
T ss_dssp             HHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGTS
T ss_pred             HHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhhc
Confidence            45555666677889999987    588885  332   77788889999999999998765444

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.92  E-value=9.6e-05  Score=69.46  Aligned_cols=51  Identities=20%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhC-CCEEEeCceEEEeC--C----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKS-GVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~-gV~v~~~~V~~v~~--~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.+++. ||+++.++|+++..  +    .|++++|+++.+|.||.|+|..+.
T Consensus       196 l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          196 VADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            445555666677 99999888888853  2    366778888999999999998665

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.89  E-value=5.6e-05  Score=70.23  Aligned_cols=55  Identities=13%  Similarity=0.039  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEEc---CCc--EEEeeEEEEcCCCCCchhhh
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILN---DGT--EVPYGLLVWSTGVGPSTLVK  124 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~--~--~v~~~---~g~--~i~~d~vi~a~G~~~~~~~~  124 (283)
                      +...+.+.+.+.|++++.+ +|+++..  +  .|++.   +|+  ++.+|.||.|+|.....+..
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~  215 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFD  215 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHH
Confidence            4455566677889999998 8988854  2  46663   565  78999999999987665544

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.88  E-value=0.00012  Score=68.42  Aligned_cols=49  Identities=24%  Similarity=0.313  Sum_probs=36.9

Q ss_pred             HHHHHHHHh-CCCEEEeCceEEEeC--C----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           72 HYATTQLSK-SGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        72 ~~~~~~l~~-~gV~v~~~~V~~v~~--~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+.+.+++ .||+++.++|++++.  +    .|++++|+++.+|.||.|+|..+.
T Consensus       179 ~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            334455566 799999888888853  2    356678778999999999998664

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.87  E-value=8.8e-05  Score=69.60  Aligned_cols=91  Identities=25%  Similarity=0.381  Sum_probs=64.4

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC--------CCC----------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------LSS----------------------   65 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~--------l~~----------------------   65 (283)
                      .++|||||+.|..+|..+++++              .+|.|||..+.        +..                      
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G--------------~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~  109 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHG--------------ARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSI  109 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHH
Confidence            6999999999999999999988              89999996421        100                      


Q ss_pred             -------C---------C-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--c----CCcEEEeeEE
Q 023375           66 -------F---------D-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--N----DGTEVPYGLL  111 (283)
Q Consensus        66 -------~---------~-~-----------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~----~g~~i~~d~v  111 (283)
                             +         + +           .+.......|++.||+++.+.-.=+.++.|..  .    +++++.++.+
T Consensus       110 ~~~~~~~~Gi~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~i  189 (542)
T 4b1b_A          110 FKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYI  189 (542)
T ss_dssp             HHHTGGGGTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEE
T ss_pred             HHhhhHhcCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeE
Confidence                   0         0 0           11122334467789999887555556666544  2    3357999999


Q ss_pred             EEcCCCCCc
Q 023375          112 VWSTGVGPS  120 (283)
Q Consensus       112 i~a~G~~~~  120 (283)
                      |+|||.+|.
T Consensus       190 iIATGs~P~  198 (542)
T 4b1b_A          190 LIATGCRPH  198 (542)
T ss_dssp             EECCCEEEC
T ss_pred             EeccCCCCC
Confidence            999999886

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.86  E-value=0.00015  Score=65.49  Aligned_cols=44  Identities=14%  Similarity=0.276  Sum_probs=35.2

Q ss_pred             HHHHhCCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCC
Q 023375           76 TQLSKSGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        76 ~~l~~~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      +.+++.|++++++ +|++|..+  .++..+|+++.+|.||+|+|...
T Consensus       197 ~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~~  243 (421)
T 3nrn_A          197 RIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRE  243 (421)
T ss_dssp             HHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHHH
T ss_pred             HHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHHH
Confidence            4456779999999 89999753  55456788999999999999653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.84  E-value=0.00012  Score=68.08  Aligned_cols=51  Identities=22%  Similarity=0.150  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeCC------eEEEc-CCc--EEEee-EEEEcCCCCC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ------KLILN-DGT--EVPYG-LLVWSTGVGP  119 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~------~v~~~-~g~--~i~~d-~vi~a~G~~~  119 (283)
                      .+...+.+.+++.||+++++ +|+++..+      +|++. +++  ++.+| .||+|+|...
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            44555666677889999999 88887532      35554 343  58896 9999999876

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.84  E-value=3.5e-07  Score=84.61  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=83.9

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHH--------HHHHHHHHHHhCCCEEE
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR--------LRHYATTQLSKSGVRLV   86 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~--------~~~~~~~~l~~~gV~v~   86 (283)
                      +++++|+|  |++++..+...+              ..+ +.+.+ ++++.+++.        ....+.+.+++.|. ++
T Consensus       214 ~~~~~ggg--~~~~ae~~~~~G--------------~~~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~  275 (472)
T 2e5v_A          214 TVTSLDGE--VFLLTETLRGEG--------------AQI-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VF  275 (472)
T ss_dssp             EEECGGGC--CEECCTHHHHTT--------------CEE-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EE
T ss_pred             EEEccCCC--ceeeehhhcCCc--------------eEE-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EE
Confidence            44556766  888887776654              555 66666 777655443        25566666766664 44


Q ss_pred             eC-c-eEEEeCCeEEEcCCcEEE-eeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375           87 RG-I-VKDVDSQKLILNDGTEVP-YGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST  163 (283)
Q Consensus        87 ~~-~-V~~v~~~~v~~~~g~~i~-~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~  163 (283)
                      ++ . +.+       +.  +.++ .+.++.+.|..|+..+.-.+..+...|.|.||+++|| +.|+|||+|||+... ..
T Consensus       276 ld~~~~~~-------~~--~~~~~~~~~~~~~G~dp~~~i~v~p~~~~~~GGI~vd~~~~t-~ipgLyAaGd~a~~~-~h  344 (472)
T 2e5v_A          276 IDLSKIED-------FE--RKFPVVAKYLARHGHNYKVKIPIFPAAHFVDGGIRVNIRGES-NIVNLYAIGEVSDSG-LH  344 (472)
T ss_dssp             EECTTCTT-------HH--HHCHHHHHHHHHTTCCTTSCEECEEEEEEESCEEECCTTCBC-SSBTEEECGGGEECS-SS
T ss_pred             EeccchHH-------HH--HHhHHHHHHHHHhCcCcccceEeehhhceeCCCeEECCCCcc-ccCCEEecchhcccc-cC
Confidence            33 2 110       10  1233 4667778898887211111111233688999999999 899999999998621 11


Q ss_pred             CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          164 GKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       164 ~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      |.   ...+..|..+|.+.+++...
T Consensus       345 g~---~rl~~~sl~~~~v~G~~a~~  366 (472)
T 2e5v_A          345 GA---NRLASNSLLEGLVFGINLPR  366 (472)
T ss_dssp             TT---SCCTTHHHHHHHHHHHHGGG
T ss_pred             CC---CCCCcccHHHHHHHHHHHHH
Confidence            11   24555666666666555443

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.84  E-value=0.00014  Score=67.55  Aligned_cols=52  Identities=23%  Similarity=0.222  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEeC--C----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSKSGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~~V~~v~~--~----~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+...+.+.+++.||+++.++|++++.  +    .|++.+|+++.+|.||.|+|....
T Consensus       174 ~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          174 EVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            344455566667899998888888753  2    366778888999999999998654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.81  E-value=5.7e-05  Score=71.23  Aligned_cols=59  Identities=14%  Similarity=-0.001  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcC---C--cEEEeeEEEEcCCCCCchhhhccCC
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILND---G--TEVPYGLLVWSTGVGPSTLVKSLDL  128 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~---g--~~i~~d~vi~a~G~~~~~~~~~~~l  128 (283)
                      +...+.+.+.+.|++++++ +|+++..  +   +|++.+   |  .++.+|.||.|+|.....+....+.
T Consensus       172 l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~  241 (561)
T 3da1_A          172 LTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRS  241 (561)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCC
Confidence            3344455567889999998 8988753  3   355543   3  4789999999999876555554443

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.76  E-value=0.00011  Score=67.69  Aligned_cols=49  Identities=16%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEe--CCeE---EEc-CCcEEEeeEEEEcCCCCCc
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVD--SQKL---ILN-DGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~--~~~v---~~~-~g~~i~~d~vi~a~G~~~~  120 (283)
                      ...+.+.+++.||+++.+ .| ++.  ++.+   .+. ++.++.+|.||+|+|..+.
T Consensus       122 ~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          122 FNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence            344555566789999999 68 874  3433   443 3345789999999999876

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.71  E-value=0.00011  Score=70.29  Aligned_cols=52  Identities=19%  Similarity=0.183  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhCCC--EEEeC-ceEEEeCC------e--EEEc------CC--cEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSKSGV--RLVRG-IVKDVDSQ------K--LILN------DG--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV--~v~~~-~V~~v~~~------~--v~~~------~g--~~i~~d~vi~a~G~~~~  120 (283)
                      .+...+.+.+++.|+  +++.+ +|++++.+      .  |+++      +|  +++.+|.||.|.|....
T Consensus       142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~  212 (639)
T 2dkh_A          142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN  212 (639)
T ss_dssp             HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH
Confidence            566677777888877  99998 88888532      2  4444      45  57999999999998764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.62  E-value=0.00043  Score=65.03  Aligned_cols=49  Identities=16%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEcC---C--cEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILND---G--TEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~---g--~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+.+.+++.   ++.+ +|++++.+  +  +++.+   |  +++.+|.||.|.|....
T Consensus       139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSP  197 (549)
T ss_dssp             HHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH
Confidence            3445555666655   7778 78888543  3  44544   6  47999999999998653

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.61  E-value=0.00044  Score=62.92  Aligned_cols=58  Identities=28%  Similarity=0.372  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeC----------------C----eEEEcCCcEE--EeeEEEEcCCCCCchhhhc
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDS----------------Q----KLILNDGTEV--PYGLLVWSTGVGPSTLVKS  125 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~----------------~----~v~~~~g~~i--~~d~vi~a~G~~~~~~~~~  125 (283)
                      .+...+.+.+++.|++++.+ +|+++..                +    .|.+.+| ++  .+|.||+|+|.....+...
T Consensus       182 ~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~~l~~~  260 (448)
T 3axb_A          182 KVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSNRLLNP  260 (448)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHHHHHGG
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHHHHHHH
Confidence            45556667778899999998 8998854                2    2556666 68  9999999999876555555


Q ss_pred             cC
Q 023375          126 LD  127 (283)
Q Consensus       126 ~~  127 (283)
                      ++
T Consensus       261 ~g  262 (448)
T 3axb_A          261 LG  262 (448)
T ss_dssp             GT
T ss_pred             cC
Confidence            44

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.60  E-value=0.00025  Score=65.84  Aligned_cols=106  Identities=13%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CCC---------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LSS---------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~~---------------------   65 (283)
                      ..|+|||+||+|+.+|..|.+.+...+...............+|+. .+       +|.                     
T Consensus        40 ~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~  119 (501)
T 4b63_A           40 HDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSF  119 (501)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTT
T ss_pred             CcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCcc
Confidence            4699999999999999999876532111111111122445566653 11       110                     


Q ss_pred             -----------------------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC------------eEEEcCC-----c
Q 023375           66 -----------------------FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ------------KLILNDG-----T  104 (283)
Q Consensus        66 -----------------------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~------------~v~~~~g-----~  104 (283)
                                             ...+..+|++..-++.+..+..+ +|++|+..            .|++.++     +
T Consensus       120 sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~  199 (501)
T 4b63_A          120 TFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEIS  199 (501)
T ss_dssp             SHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEE
T ss_pred             chHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEE
Confidence                                   01356667776667777778888 78888521            3555443     3


Q ss_pred             EEEeeEEEEcCCCCCc
Q 023375          105 EVPYGLLVWSTGVGPS  120 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~~  120 (283)
                      ++.++.||+|+|..|.
T Consensus       200 ~~~ar~vVlatG~~P~  215 (501)
T 4b63_A          200 ARRTRKVVIAIGGTAK  215 (501)
T ss_dssp             EEEEEEEEECCCCEEC
T ss_pred             EEEeCEEEECcCCCCC
Confidence            6889999999998765

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.43  E-value=9.2e-05  Score=61.19  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+||||||+|+.+|..|++.+              .+|+|+|+.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G--------------~~V~v~Ek~   34 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAG--------------HQVHLFDKS   34 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECC
Confidence            36999999999999999999988              999999986

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.32  E-value=0.00092  Score=63.10  Aligned_cols=52  Identities=12%  Similarity=0.094  Sum_probs=36.3

Q ss_pred             HHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEc---CCc--EEEeeEEEEcCCCCCchhhhc
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVDS--QK---LILN---DGT--EVPYGLLVWSTGVGPSTLVKS  125 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~---~g~--~i~~d~vi~a~G~~~~~~~~~  125 (283)
                      +.+.+.+.|++++++ +|+++..  +.   |++.   +|+  ++.+|.||.|+|.....+...
T Consensus       194 l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~  256 (571)
T 2rgh_A          194 NIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNL  256 (571)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTT
T ss_pred             HHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHh
Confidence            344556789999998 8888853  33   5543   343  699999999999765555443

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.28  E-value=0.0014  Score=62.89  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=20.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHH
Q 023375           15 LHCVVVGGGPTGVEFSGELSD   35 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~   35 (283)
                      ..|+|||||++|+.+|..|++
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~   29 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSE   29 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHhc
Confidence            579999999999999999998

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.26  E-value=0.0025  Score=62.25  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=30.2

Q ss_pred             CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCC
Q 023375           81 SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      .|++++++ +|++|+.+    .|++.+|+++.+|.||+|++.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence            37899999 89999754    366678889999999999954

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.24  E-value=0.001  Score=63.26  Aligned_cols=51  Identities=18%  Similarity=0.174  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhCC-CEEEeC-ceEEEe--CC---eEEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSKSG-VRLVRG-IVKDVD--SQ---KLIL---NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~~g-V~v~~~-~V~~v~--~~---~v~~---~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +...+.+.+.+.| |+++.+ .|+++.  ++   +|..   .+|+  ++.++.||+|+|....
T Consensus       136 l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~  198 (602)
T 1kf6_A          136 MLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (602)
T ss_dssp             HHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcc
Confidence            3344455566678 999999 788774  33   2332   4676  6899999999998553

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.23  E-value=0.0031  Score=59.65  Aligned_cols=48  Identities=15%  Similarity=0.012  Sum_probs=33.9

Q ss_pred             HHHHHHHhCCCEEEeC-ceEEEeC--C----eEEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375           73 YATTQLSKSGVRLVRG-IVKDVDS--Q----KLIL---NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        73 ~~~~~l~~~gV~v~~~-~V~~v~~--~----~v~~---~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+++.||+++.+ .|+++..  +    +|..   .+|+  ++.++.||+|+|....
T Consensus       148 ~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          148 TLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence            3445556779999999 7888742  2    2443   3565  6899999999998553

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.10  E-value=0.0012  Score=61.97  Aligned_cols=31  Identities=19%  Similarity=0.470  Sum_probs=28.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||||++|+.+|.+|++ +              .+|+|+|+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G--------------~~V~vlEk~   39 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-Q--------------HQVIVLSKG   39 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-T--------------SCEEEECSS
T ss_pred             CCEEEECccHHHHHHHHHHhc-C--------------CcEEEEECC
Confidence            589999999999999999998 6              788888875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.99  E-value=0.0058  Score=58.19  Aligned_cols=47  Identities=17%  Similarity=0.041  Sum_probs=32.6

Q ss_pred             HHHHHHhCCCEEEeC-ceEEEe--CC---eEEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375           74 ATTQLSKSGVRLVRG-IVKDVD--SQ---KLIL---NDGT--EVPYGLLVWSTGVGPS  120 (283)
Q Consensus        74 ~~~~l~~~gV~v~~~-~V~~v~--~~---~v~~---~~g~--~i~~d~vi~a~G~~~~  120 (283)
                      +.+.+.+.||+++.+ .|.++.  ++   +|..   .+|+  .+.++.||+|+|....
T Consensus       161 L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          161 LYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence            334445678999988 787774  33   3444   3565  6899999999998654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.93  E-value=0.00048  Score=63.52  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=33.4

Q ss_pred             HHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCCC
Q 023375           77 QLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        77 ~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      .+++.|++|+++ +|++|..  +   +|+++||+++.+|.||.+++..
T Consensus       230 ~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          230 LFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             HHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            345789999999 8999853  3   4788999999999999988753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.53  E-value=0.0069  Score=52.87  Aligned_cols=75  Identities=17%  Similarity=0.168  Sum_probs=54.1

Q ss_pred             ccCeEEEEccCcHHHH-HHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve-~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++|.|||.|.+|+. +|..|.+++              .+|++.+.....+         ..+.|++.||+++.+ ..
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G--------------~~V~~~D~~~~~~---------~~~~L~~~gi~v~~g~~~   59 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAG--------------FEVSGCDAKMYPP---------MSTQLEALGIDVYEGFDA   59 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTT--------------CEEEEEESSCCTT---------HHHHHHHTTCEEEESCCG
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCC--------------CEEEEEcCCCCcH---------HHHHHHhCCCEEECCCCH
Confidence            3579999999999997 777888887              9999999863211         235578889999876 22


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+..          -.+|.||.++|..+.
T Consensus        60 ~~l~~----------~~~d~vV~Spgi~~~   79 (326)
T 3eag_A           60 AQLDE----------FKADVYVIGNVAKRG   79 (326)
T ss_dssp             GGGGS----------CCCSEEEECTTCCTT
T ss_pred             HHcCC----------CCCCEEEECCCcCCC
Confidence            11110          137889999988775

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.48  E-value=0.002  Score=58.46  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|||+.
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G--------------~~V~viE~~   54 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHD--------------VDVTVYTDR   54 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCC--------------CeEEEEcCC
Confidence            58999999999999999999987              999999975

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=96.39  E-value=0.0027  Score=57.05  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             HHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCC
Q 023375           76 TQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        76 ~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      +.+++.|++++++ +|++|..  +.   |++ +|+++.+|.||+|+|...
T Consensus       204 ~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~  252 (425)
T 3ka7_A          204 TVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAA  252 (425)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHH
T ss_pred             HHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHH
Confidence            4456789999999 8998853  33   444 588899999999998643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=96.36  E-value=0.0035  Score=57.70  Aligned_cols=33  Identities=33%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||++|+++|..|++.+              .+|+|+|+.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g--------------~~v~vlE~~   65 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAG--------------HQVTVLEAS   65 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHT--------------CEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            568999999999999999999887              899999986

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.34  E-value=0.0061  Score=55.69  Aligned_cols=77  Identities=16%  Similarity=0.239  Sum_probs=55.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~   91 (283)
                      +.++|+|||.|.+|+.+|..|.+.+              .+|++.+.....  .++     ..+.|++.||+++.+ ...
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G--------------~~V~~~D~~~~~--~~~-----~~~~L~~~gi~~~~g~~~~   66 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLG--------------AIVTVNDGKPFD--ENP-----TAQSLLEEGIKVVCGSHPL   66 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTT--------------CEEEEEESSCGG--GCH-----HHHHHHHTTCEEEESCCCG
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCC--------------CEEEEEeCCccc--CCh-----HHHHHHhCCCEEEECCChH
Confidence            4579999999999999999999887              999999986311  111     235678889999876 311


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ++      +.+    .+|.||.++|+.+.
T Consensus        67 ~~------~~~----~~d~vv~spgi~~~   85 (451)
T 3lk7_A           67 EL------LDE----DFCYMIKNPGIPYN   85 (451)
T ss_dssp             GG------GGS----CEEEEEECTTSCTT
T ss_pred             Hh------hcC----CCCEEEECCcCCCC
Confidence            11      000    17899999998775

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.29  E-value=0.0041  Score=54.72  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=29.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||.+|+.+|.+|++.+              .+|+|+|+.
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G--------------~~V~vle~~   38 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKG--------------YSVHILARD   38 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CEEEEEecc
Confidence            58999999999999999999877              899999974

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.28  E-value=0.0031  Score=58.09  Aligned_cols=38  Identities=32%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             hCCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCC
Q 023375           80 KSGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      +.|++++++ +|++|..+  .+++.+|+++.+|.||.++..
T Consensus       234 ~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          234 KEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             GGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSCH
T ss_pred             hcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCCH
Confidence            457788888 89998754  688999999999999998864

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.21  E-value=0.0034  Score=57.34  Aligned_cols=32  Identities=38%  Similarity=0.481  Sum_probs=28.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc--EEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~--~V~li~~~   60 (283)
                      ++|+|||||.+|+.+|.+|++.+              .  +|+|+|+.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G--------------~~~~V~vlEa~   36 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAP--------------CPPKVVLVESS   36 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSS--------------SCCEEEEECSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCC--------------CCCcEEEEeCC
Confidence            58999999999999999999876              5  88888874

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.15  E-value=0.0047  Score=55.11  Aligned_cols=34  Identities=29%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..+|+|||||++|+-+|..|++.+              .+|+|+|+.
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G--------------~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAG--------------HDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTS--------------CEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence            4579999999999999999999876              899999986

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.10  E-value=0.0066  Score=50.06  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=51.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++|+|||||.+|...|..|.+.+              .+|+++.+.     ..+++    .+...+.+|+++..... 
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~G--------------A~VtVvap~-----~~~~l----~~l~~~~~i~~i~~~~~-   85 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEG--------------AAITVVAPT-----VSAEI----NEWEAKGQLRVKRKKVG-   85 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGC--------------CCEEEECSS-----CCHHH----HHHHHTTSCEEECSCCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEECCC-----CCHHH----HHHHHcCCcEEEECCCC-
Confidence            4579999999999999999999887              899999753     33443    33334556777654211 


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                        ++.       --.+|.||.|||....
T Consensus        86 --~~d-------L~~adLVIaAT~d~~~  104 (223)
T 3dfz_A           86 --EED-------LLNVFFIVVATNDQAV  104 (223)
T ss_dssp             --GGG-------SSSCSEEEECCCCTHH
T ss_pred             --HhH-------hCCCCEEEECCCCHHH
Confidence              111       1138999999997653

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=96.03  E-value=0.0062  Score=55.86  Aligned_cols=33  Identities=39%  Similarity=0.497  Sum_probs=30.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+|+|+.
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g--------------~~v~v~E~~   43 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAG--------------YKVTVLEAR   43 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecc
Confidence            468999999999999999999877              899999986

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.00  E-value=0.0053  Score=55.05  Aligned_cols=32  Identities=31%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|||||++|+++|..+++.+              .+|+|+|..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G--------------~~V~liE~~   33 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLG--------------VPVRLFEMR   33 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--------------CCEEEECCT
T ss_pred             CCEEEECchHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence            57999999999999999999987              899999863

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=95.96  E-value=0.0066  Score=53.10  Aligned_cols=38  Identities=13%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|||||.+|+.+|.+|++.+...        .+..+|+|+|+.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~--------~p~~~V~vlE~~   38 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSV--------LQPLDIKVYADR   38 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTT--------SSSCEEEEEESS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhcccc--------CCCceEEEEECC
Confidence            47999999999999999999875100        012799999986

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=95.94  E-value=0.0056  Score=56.78  Aligned_cols=37  Identities=11%  Similarity=-0.056  Sum_probs=29.8

Q ss_pred             CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCC
Q 023375           82 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      |++++++ +|++|+.+    .|++.+|+++.+|.||+|++..
T Consensus       226 g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGG
T ss_pred             CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHH
Confidence            6778888 79998643    3566788899999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=95.70  E-value=0.0077  Score=54.61  Aligned_cols=38  Identities=32%  Similarity=0.447  Sum_probs=30.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||.+|+.+|..|++.+...        .++.+|+|+|+.
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~--------~~~~~V~vlEa~   43 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEK--------NLPLELTLVEAS   43 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTT--------TCSEEEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhcccc--------CCCCCEEEEECC
Confidence            58999999999999999999876110        123789999885

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=95.65  E-value=0.0077  Score=54.99  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=29.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||.+|+.+|..|++.+              .+|+|+|+.
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g--------------~~v~v~E~~   48 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRG--------------TDAVLLESS   48 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTT--------------CCEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEcC
Confidence            468999999999999999999876              789999875

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=95.64  E-value=0.011  Score=53.66  Aligned_cols=32  Identities=31%  Similarity=0.521  Sum_probs=29.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+|+|+.
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g--------------~~v~v~E~~   37 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAG--------------LSVAVIEAR   37 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEECC
Confidence            58999999999999999999876              789999875

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.61  E-value=0.012  Score=52.47  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||.+|+.+|..|++.+              .+|+++|+.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g--------------~~v~v~E~~   35 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKG--------------HQVHIIDQR   35 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEEec
Confidence            58999999999999999999876              899999986

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=95.61  E-value=0.0095  Score=53.42  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=29.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||.+|+-+|..|++. +              .+|+|+|+.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g--------------~~v~v~E~~   40 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLD--------------KRVLVLERR   40 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSC--------------CCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCC--------------CCEEEEeCC
Confidence            36899999999999999999987 5              789999986

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=95.59  E-value=0.01  Score=54.59  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||.+|+.+|..|++.+              .+|+|+|+.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g--------------~~v~v~E~~   45 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHG--------------LNVTVFEAE   45 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTS--------------CEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEeC
Confidence            468999999999999999999876              899999986

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.58  E-value=0.0094  Score=54.37  Aligned_cols=34  Identities=29%  Similarity=0.236  Sum_probs=30.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      ..+|+|||||.+|+.+|..|++.+              .+|+++|++.
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G--------------~~V~vlE~~~   44 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDG--------------KKVLHIDKQD   44 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCCC
Confidence            358999999999999999999887              8999999973

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=95.43  E-value=0.01  Score=54.57  Aligned_cols=32  Identities=28%  Similarity=0.458  Sum_probs=28.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||.+|+.+|..|++.+              .+|+|+|+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g--------------~~v~v~E~~   71 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAG--------------FKTLLLEAR   71 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence            68999999999999999999876              788888875

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=95.41  E-value=0.012  Score=52.81  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=29.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||++|+.+|..|++.+              .+|+++|+.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g--------------~~v~v~E~~   61 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSG--------------QRVLIVDRR   61 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCC--------------CceEEEecc
Confidence            458999999999999999999876              889999986

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=95.37  E-value=0.011  Score=56.70  Aligned_cols=35  Identities=29%  Similarity=0.546  Sum_probs=31.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|+|||+|++|+.+|..|++.+              .+|+++|+.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g--------------~~v~~~e~~  139 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFG--------------MDVTLLEAR  139 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecC
Confidence            45579999999999999999999877              889999875

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=95.35  E-value=0.014  Score=52.33  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..+|+|||||++|+.+|..|++.+.             .+|+++|+.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~-------------~~v~v~E~~   39 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGF-------------HDYTILERT   39 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-------------CCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC-------------CcEEEEECC
Confidence            34689999999999999999997641             589999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.31  E-value=0.023  Score=43.58  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++....+|+|+|+|..|..+|..|...+              .+|++++++
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g--------------~~V~vid~~   51 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSG--------------HSVVVVDKN   51 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            3455679999999999999999999876              899999875

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=95.13  E-value=0.014  Score=51.75  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=28.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||++|+.+|..|++.+              .+|+++|+.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g--------------~~v~v~E~~   33 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLN--------------KKVLVIEKR   33 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGT--------------CCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecC
Confidence            37999999999999999999876              889999986

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=95.12  E-value=0.017  Score=56.87  Aligned_cols=35  Identities=29%  Similarity=0.546  Sum_probs=31.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|+|||+|++|+.+|..|++.+              .+|+|+|+.
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g--------------~~v~v~E~~  310 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFG--------------MDVTLLEAR  310 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEec
Confidence            44579999999999999999999887              899999975

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=95.12  E-value=0.017  Score=52.61  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=29.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||||.+|+.+|.+|++.++            +.+|+|+|+.
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~------------~~~v~v~E~~   38 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFP------------DLNITLLEAG   38 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCT------------TSEEEEECSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCC------------CCCEEEEECC
Confidence            589999999999999999998752            2789999874

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=94.88  E-value=0.025  Score=53.86  Aligned_cols=34  Identities=32%  Similarity=0.590  Sum_probs=30.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI   62 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~   62 (283)
                      ..|+|||||++|+.+|.+|++.+              .+|+|||+...
T Consensus        47 ~dvvIIG~G~aGl~aA~~l~~~G--------------~~V~liE~~~~   80 (623)
T 3pl8_A           47 YDVVIVGSGPIGCTYARELVGAG--------------YKVAMFDIGEI   80 (623)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCC--------------CcEEEEeccCC
Confidence            47999999999999999999887              89999998743

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=94.82  E-value=0.019  Score=53.12  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=27.2

Q ss_pred             EEEeC-ceEEEeC---C--eEEEcCCcEEEeeEEEEcCCC
Q 023375           84 RLVRG-IVKDVDS---Q--KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        84 ~v~~~-~V~~v~~---~--~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      +|+++ +|++|..   +  .|++.+|+++.+|.||+|++.
T Consensus       216 ~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          216 WLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQ  255 (516)
T ss_dssp             GEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred             EEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCH
Confidence            48888 8999963   2  366678889999999999974

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.75  E-value=0.048  Score=49.93  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhh
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      +|+|+|||||.+|+.+|..|++.+
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G   24 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAG   24 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCC
Confidence            478999999999999999999865

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.71  E-value=0.051  Score=50.17  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             cccCeEEEEccCcHHHH-HHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve-~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      .+.++|.|||-|-+|+. +|..|.+.+              .+|+..+...     ++     ..+.|++.||++..+ .
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G--------------~~V~~~D~~~-----~~-----~~~~l~~~gi~~~~g~~   75 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEG--------------YQISGSDLAP-----NS-----VTQHLTALGAQIYFHHR   75 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTT--------------CEEEEECSSC-----CH-----HHHHHHHTTCEEESSCC
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCC--------------CeEEEEECCC-----CH-----HHHHHHHCCCEEECCCC
Confidence            35689999999999997 788888887              9999998652     11     234588899999876 2


Q ss_pred             eEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           90 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        90 V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ...+            -.+|.||.++|+.+.
T Consensus        76 ~~~~------------~~~d~vV~Spgi~~~   94 (494)
T 4hv4_A           76 PENV------------LDASVVVVSTAISAD   94 (494)
T ss_dssp             GGGG------------TTCSEEEECTTSCTT
T ss_pred             HHHc------------CCCCEEEECCCCCCC
Confidence            2111            127888998888774

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.53  E-value=0.13  Score=44.40  Aligned_cols=77  Identities=14%  Similarity=0.221  Sum_probs=51.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEe---CceE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR---GIVK   91 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~---~~V~   91 (283)
                      ++|+|||+|..|.-+|..|++.+              .+|+++.+++        .     +.+++.|+.+..   +...
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g--------------~~V~~~~r~~--------~-----~~i~~~Gl~~~~~~~g~~~   55 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTG--------------HCVSVVSRSD--------Y-----ETVKAKGIRIRSATLGDYT   55 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTT--------------CEEEEECSTT--------H-----HHHHHHCEEEEETTTCCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEeCCh--------H-----HHHHhCCcEEeecCCCcEE
Confidence            58999999999999999999876              8999997642        0     345566776654   1221


Q ss_pred             EEeCCeEEEcCCc-EE-EeeEEEEcCCCCCc
Q 023375           92 DVDSQKLILNDGT-EV-PYGLLVWSTGVGPS  120 (283)
Q Consensus        92 ~v~~~~v~~~~g~-~i-~~d~vi~a~G~~~~  120 (283)
                       +.+-.+. .+-+ .. ++|.||+|+-....
T Consensus        56 -~~~~~~~-~~~~~~~~~~DlVilavK~~~~   84 (320)
T 3i83_A           56 -FRPAAVV-RSAAELETKPDCTLLCIKVVEG   84 (320)
T ss_dssp             -ECCSCEE-SCGGGCSSCCSEEEECCCCCTT
T ss_pred             -EeeeeeE-CCHHHcCCCCCEEEEecCCCCh
Confidence             1111221 2222 22 68999999987654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.52  E-value=0.049  Score=40.43  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=28.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|+|+|..|..+|..|.+.+              .+|++++++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g--------------~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKG--------------HDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            68999999999999999998876              899999763

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.51  E-value=0.042  Score=41.98  Aligned_cols=81  Identities=14%  Similarity=0.026  Sum_probs=49.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV   93 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v   93 (283)
                      ..+++|+|+|..|..+|..|.+.+              .+|+++++..      ++..+.+.+ ....|++++.+..++ 
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g--------------~~V~vid~~~------~~~~~~~~~-~~~~~~~~i~gd~~~-   60 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRG--------------QNVTVISNLP------EDDIKQLEQ-RLGDNADVIPGDSND-   60 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCC------HHHHHHHHH-HHCTTCEEEESCTTS-
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--------------CCEEEEECCC------hHHHHHHHH-hhcCCCeEEEcCCCC-
Confidence            468999999999999999999876              8999997641      121222222 224577777652110 


Q ss_pred             eCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           94 DSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        94 ~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                       .+.  +..-..-.+|.||.+++...
T Consensus        61 -~~~--l~~a~i~~ad~vi~~~~~d~   83 (153)
T 1id1_A           61 -SSV--LKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             -HHH--HHHHTTTTCSEEEECSSCHH
T ss_pred             -HHH--HHHcChhhCCEEEEecCChH
Confidence             000  11000114899999998643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.43  E-value=0.043  Score=41.15  Aligned_cols=76  Identities=14%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      ..++++|+|+|..|..+|..|.+.+              .+|++++.+       ++.    .+.+.+.|++++.+.+++
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g--------------~~V~~id~~-------~~~----~~~~~~~~~~~~~gd~~~   59 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAG--------------KKVLAVDKS-------KEK----IELLEDEGFDAVIADPTD   59 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESC-------HHH----HHHHHHTTCEEEECCTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEECC-------HHH----HHHHHHCCCcEEECCCCC
Confidence            3468999999999999999999876              899999874       221    233445677766542110


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCC
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      .  +.+. +-+ .-.+|.+|.++|.
T Consensus        60 ~--~~l~-~~~-~~~~d~vi~~~~~   80 (141)
T 3llv_A           60 E--SFYR-SLD-LEGVSAVLITGSD   80 (141)
T ss_dssp             H--HHHH-HSC-CTTCSEEEECCSC
T ss_pred             H--HHHH-hCC-cccCCEEEEecCC
Confidence            0  0000 000 1148999999983

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.16  E-value=0.037  Score=50.45  Aligned_cols=36  Identities=14%  Similarity=0.218  Sum_probs=27.7

Q ss_pred             CCEEEeC-ceEEEeC--C--eEEEcCCcEEEeeEEEEcCCC
Q 023375           82 GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        82 gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      |++++++ +|++|+.  +  .|++.+|+++.+|.||+|++.
T Consensus       228 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             CTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             ccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCH
Confidence            4567888 7888853  2  366678889999999999985

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=94.09  E-value=0.042  Score=50.49  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=28.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||||++|+.+|..|++.+.             .+|+++|+.
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~-------------~~v~v~E~~   42 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGY-------------KNWHLYECN   42 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTC-------------CSEEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCC-------------CCEEEEeCC
Confidence            4689999999999999999998651             578888875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.01  E-value=0.061  Score=40.45  Aligned_cols=77  Identities=22%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV   93 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v   93 (283)
                      ..+|+|+|.|..|..+|..|.+.+              .+|++++.+.       +.    .+.+++.|+.++.+..++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g--------------~~v~vid~~~-------~~----~~~~~~~g~~~i~gd~~~~   61 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASD--------------IPLVVIETSR-------TR----VDELRERGVRAVLGNAANE   61 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCH-------HH----HHHHHHTTCEEEESCTTSH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCH-------HH----HHHHHHcCCCEEECCCCCH
Confidence            358999999999999999999877              8999998752       21    2234557888765421100


Q ss_pred             eCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           94 DSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        94 ~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                         .+ +..-..-.+|.+|.+++...
T Consensus        62 ---~~-l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           62 ---EI-MQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             ---HH-HHHTTGGGCSEEEECCSCHH
T ss_pred             ---HH-HHhcCcccCCEEEEECCChH
Confidence               00 00000124899999988543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.98  E-value=0.044  Score=49.56  Aligned_cols=33  Identities=27%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||+|.+|+.+|..|++.+              .+|+++|++
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g--------------~~v~~~e~~   38 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNG--------------KKVLHMDRN   38 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence            358999999999999999999877              899999986

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=93.82  E-value=0.039  Score=52.86  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=28.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+|||||.+|+.+|.++++.+              .+|+|||+.
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G--------------~~V~vlEK~   37 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKG--------------LSTIVLSLI   37 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSS
T ss_pred             ccEEEECchHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence            47999999999999999999877              889999875

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=93.70  E-value=0.05  Score=49.94  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=30.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      .+|+|||+|.+|+.+|..|++.+              .+|+++|++.
T Consensus        21 ~dv~iiG~G~~g~~~a~~l~~~g--------------~~v~~~e~~~   53 (475)
T 3p1w_A           21 YDVIILGTGLKECILSGLLSHYG--------------KKILVLDRNP   53 (475)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeccC
Confidence            58999999999999999999887              8999999974

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=93.67  E-value=0.073  Score=43.22  Aligned_cols=36  Identities=14%  Similarity=0.003  Sum_probs=30.8

Q ss_pred             CCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          146 SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       146 ~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +.++||++||++.          ....+.|+..|+.+|+.|...++
T Consensus       293 ~~~~v~l~GDa~~----------g~gv~~A~~sG~~aA~~I~~~L~  328 (336)
T 3kkj_A          293 ADLGIYVCGDWCL----------SGRVEGAWLSGQEAARRLLEHLQ  328 (336)
T ss_dssp             TTTTEEECCGGGT----------TSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEecccC----------CcCHHHHHHHHHHHHHHHHHHhh
Confidence            5789999999874          23578899999999999998886

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.52  E-value=0.16  Score=43.59  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=47.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD   94 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~   94 (283)
                      .+|+|||+|..|.-+|..|+ .+              .+|+++.++.       +    ..+.+++.|+.+.........
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g--------------~~V~~~~r~~-------~----~~~~l~~~G~~~~~~~~~~~~   56 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LY--------------HDVTVVTRRQ-------E----QAAAIQSEGIRLYKGGEEFRA   56 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TT--------------SEEEEECSCH-------H----HHHHHHHHCEEEEETTEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cC--------------CceEEEECCH-------H----HHHHHHhCCceEecCCCeecc
Confidence            58999999999999999999 65              8999997641       1    123455668777643111111


Q ss_pred             CCeEEEcCCcEEEeeEEEEcCCC
Q 023375           95 SQKLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        95 ~~~v~~~~g~~i~~d~vi~a~G~  117 (283)
                        .+.......-++|.||+|+-.
T Consensus        57 --~~~~~~~~~~~~D~vilavK~   77 (307)
T 3ego_A           57 --DCSADTSINSDFDLLVVTVKQ   77 (307)
T ss_dssp             --CCEEESSCCSCCSEEEECCCG
T ss_pred             --cccccccccCCCCEEEEEeCH
Confidence              111111111258999998764

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=93.50  E-value=0.043  Score=50.72  Aligned_cols=33  Identities=39%  Similarity=0.502  Sum_probs=28.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.++|||||.+|+-+|..|++..             +.+|.|+|++
T Consensus        18 yD~IIVGsG~aG~v~A~rLse~~-------------~~~VLvLEaG   50 (526)
T 3t37_A           18 CDIVIVGGGSAGSLLAARLSEDP-------------DSRVLLIEAG   50 (526)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTST-------------TSCEEEECSS
T ss_pred             eeEEEECccHHHHHHHHHHHhCC-------------CCeEEEEcCC
Confidence            58999999999999999998732             2799999986

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=93.49  E-value=0.057  Score=51.74  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=28.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHh------hhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDF------IMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~------~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||.+|+.+|.+|++.      +              .+|+||++.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG--------------~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPE--------------AKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTT--------------CCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCC--------------CcEEEEEec
Confidence            5799999999999999999986      5              889999974

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=93.44  E-value=0.028  Score=53.72  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=28.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHH---H-hhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELS---D-FIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~---~-~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...|+|||||.+|+.+|.+++   + .+              .+|+|||+.
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G--------------~~V~vlEK~   58 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGG--------------LKVTLVEKA   58 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTT--------------CCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCC--------------CeEEEEeCc
Confidence            358999999999999999999   4 55              789998875

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=93.32  E-value=0.06  Score=50.20  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=28.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|||+|++|+-+|..|++.+              .+|.++|++
T Consensus         7 ~~D~iIvG~G~aG~~~A~~L~~~g--------------~~VlvlE~g   39 (546)
T 1kdg_A            7 PYDYIIVGAGPGGIIAADRLSEAG--------------KKVLLLERG   39 (546)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             ceeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence            358999999999999999999876              788888865

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.26  E-value=0.12  Score=44.53  Aligned_cols=77  Identities=16%  Similarity=0.193  Sum_probs=49.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC--ceEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG--IVKD   92 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~--~V~~   92 (283)
                      ++|+|||+|..|.-+|..|++.+              .+|+++.++.        .     +.+++.|+.+...  ... 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g--------------~~V~~~~r~~--------~-----~~i~~~g~~~~~~~g~~~-   54 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSG--------------EDVHFLLRRD--------Y-----EAIAGNGLKVFSINGDFT-   54 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTS--------------CCEEEECSTT--------H-----HHHHHTCEEEEETTCCEE-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEEcCc--------H-----HHHHhCCCEEEcCCCeEE-
Confidence            58999999999999999999876              7899997642        1     3456678776532  221 


Q ss_pred             EeCCeEEEcCCcE-EEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTE-VPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~-i~~d~vi~a~G~~~~  120 (283)
                      +.+-.+. .+-+. -++|.||+|+-....
T Consensus        55 ~~~~~~~-~~~~~~~~~D~vilavk~~~~   82 (312)
T 3hn2_A           55 LPHVKGY-RAPEEIGPMDLVLVGLKTFAN   82 (312)
T ss_dssp             ESCCCEE-SCHHHHCCCSEEEECCCGGGG
T ss_pred             Eeeceee-cCHHHcCCCCEEEEecCCCCc
Confidence            1111111 11111 258999998876543

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=93.25  E-value=0.29  Score=45.40  Aligned_cols=74  Identities=20%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             ccCeEEEEccCcHHHHH-HHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEF-SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~-A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      +.++|.|||-|-+|+.. |..|.+.+              .+|+..+....-+         ..+.|++.||+++.+ ..
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G--------------~~V~~sD~~~~~~---------~~~~L~~~gi~~~~G~~~   74 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALG--------------HTVTGSDANIYPP---------MSTQLEQAGVTIEEGYLI   74 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESCCCTT---------HHHHHHHTTCEEEESCCG
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCC--------------CEEEEECCCCCcH---------HHHHHHHCCCEEECCCCH
Confidence            45799999999999985 66667776              9999998863211         235678889999876 22


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+.           -.+|.||.++|+.+.
T Consensus        75 ~~~~-----------~~~d~vV~Spgi~~~   93 (524)
T 3hn7_A           75 AHLQ-----------PAPDLVVVGNAMKRG   93 (524)
T ss_dssp             GGGC-----------SCCSEEEECTTCCTT
T ss_pred             HHcC-----------CCCCEEEECCCcCCC
Confidence            1110           136778888887664

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=93.21  E-value=0.048  Score=50.85  Aligned_cols=31  Identities=32%  Similarity=0.620  Sum_probs=27.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.++|||||.+|+-+|..|++ +              .+|.|+|++
T Consensus        27 yD~IIVGsG~AG~v~A~rLse-g--------------~~VlvLEaG   57 (536)
T 1ju2_A           27 YDYVIVGGGTSGCPLAATLSE-K--------------YKVLVLERG   57 (536)
T ss_dssp             EEEEEECCSTTHHHHHHHHTT-T--------------SCEEEECSS
T ss_pred             ccEEEECccHHHHHHHHHHhc-C--------------CcEEEEecC
Confidence            479999999999999999998 5              788888876

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.18  E-value=0.068  Score=45.37  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|||||.+|...|..|.+.+              .+|+++++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~G--------------a~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTG--------------CKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGT--------------CEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCC--------------CEEEEEcCC
Confidence            4579999999999999999999887              999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.16  E-value=0.08  Score=39.36  Aligned_cols=33  Identities=24%  Similarity=0.225  Sum_probs=28.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|+|+|..|..+|..|...+              .+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g--------------~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMG--------------HEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            468999999999999999998876              788998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.13  E-value=0.092  Score=43.83  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      ++-+.++|+|||+|..|.++|..|+..+-             .+|++++...
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv-------------~~i~lvD~d~   65 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGV-------------GNLTLLDFDT   65 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTC-------------SEEEEECCCB
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCC-------------CeEEEEcCCC
Confidence            34456899999999999999999998872             4899998864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.02  E-value=0.1  Score=45.02  Aligned_cols=38  Identities=18%  Similarity=0.250  Sum_probs=29.0

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc--EEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~--~V~li~~~   60 (283)
                      |+++...+|+|||+|..|.-+|..|+..+              .  +|++++++
T Consensus         2 ~~~~~~mkI~IiGaG~vG~~~a~~l~~~g--------------~~~~V~l~d~~   41 (319)
T 1lld_A            2 ETTVKPTKLAVIGAGAVGSTLAFAAAQRG--------------IAREIVLEDIA   41 (319)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTT--------------CCSEEEEECSS
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHhCC--------------CCCEEEEEeCC
Confidence            34455679999999999999999998765              5  89999764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.93  E-value=0.098  Score=44.81  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +++-+..+|+|||.|-.|.++|..|+..+-             .+++|++...
T Consensus        31 q~kL~~~~VlVvGaGGlGs~va~~La~aGV-------------G~i~lvD~D~   70 (292)
T 3h8v_A           31 YEKIRTFAVAIVGVGGVGSVTAEMLTRCGI-------------GKLLLFDYDK   70 (292)
T ss_dssp             -CGGGGCEEEEECCSHHHHHHHHHHHHHTC-------------SEEEEECCCB
T ss_pred             HHHHhCCeEEEECcCHHHHHHHHHHHHcCC-------------CEEEEECCCc
Confidence            455577899999999999999999998873             6899998763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.81  E-value=0.11  Score=40.81  Aligned_cols=75  Identities=17%  Similarity=0.092  Sum_probs=48.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      ..+|+|+|.|..|..+|..|.+. +              .+|++++++.       +.    .+.+.+.|++++.+..++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g--------------~~V~vid~~~-------~~----~~~~~~~g~~~~~gd~~~   93 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG--------------KISLGIEIRE-------EA----AQQHRSEGRNVISGDATD   93 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC--------------SCEEEEESCH-------HH----HHHHHHTTCCEEECCTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC--------------CeEEEEECCH-------HH----HHHHHHCCCCEEEcCCCC
Confidence            45899999999999999999887 6              8899997642       11    123456687765431110


Q ss_pred             EeCCeEEEcCC-cEEEeeEEEEcCCC
Q 023375           93 VDSQKLILNDG-TEVPYGLLVWSTGV  117 (283)
Q Consensus        93 v~~~~v~~~~g-~~i~~d~vi~a~G~  117 (283)
                      .  +.  +..- ..-.+|.||.+++.
T Consensus        94 ~--~~--l~~~~~~~~ad~vi~~~~~  115 (183)
T 3c85_A           94 P--DF--WERILDTGHVKLVLLAMPH  115 (183)
T ss_dssp             H--HH--HHTBCSCCCCCEEEECCSS
T ss_pred             H--HH--HHhccCCCCCCEEEEeCCC
Confidence            0  00  0000 01248999999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.73  E-value=0.059  Score=48.91  Aligned_cols=35  Identities=14%  Similarity=0.158  Sum_probs=30.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +.++|+|||.|.+|+.+|..|++.+              .+|+..+...
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G--------------~~v~~~D~~~   38 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARG--------------VTPRVMDTRM   38 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTT--------------CCCEEEESSS
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCC--------------CEEEEEECCC
Confidence            3478999999999999998888877              8889888764

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=92.67  E-value=0.14  Score=46.30  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=36.1

Q ss_pred             CCCCCHHHHc-ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            3 LAGISEEEKS-RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         3 ~~~~~~~~~~-~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++....++. +..+|+|||+|-.|.++|..|+..+-             .+++|++..
T Consensus        28 ~~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGv-------------g~i~ivD~D   73 (434)
T 1tt5_B           28 EPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-------------RQIHVIDMD   73 (434)
T ss_dssp             CCCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTC-------------CCEEEEECC
T ss_pred             ccCHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence            4455555444 67899999999999999999998873             689999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.44  E-value=0.24  Score=42.80  Aligned_cols=80  Identities=18%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      ..++|+|||+|..|.-+|..|++.+              .+|+++ +.       ++.    .+.+++.|+.+.......
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G--------------~~V~l~-~~-------~~~----~~~i~~~g~~~~~~~~~~   71 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAG--------------HEVILI-AR-------PQH----VQAIEATGLRLETQSFDE   71 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTT--------------CEEEEE-CC-------HHH----HHHHHHHCEEEECSSCEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCC--------------CeEEEE-Ec-------HhH----HHHHHhCCeEEEcCCCcE
Confidence            4578999999999999999999876              899998 42       111    233455576665321111


Q ss_pred             EeCCeEEEcCCcE-EEeeEEEEcCCCCC
Q 023375           93 VDSQKLILNDGTE-VPYGLLVWSTGVGP  119 (283)
Q Consensus        93 v~~~~v~~~~g~~-i~~d~vi~a~G~~~  119 (283)
                      -..-.+ ..+-+. -++|.||+|+....
T Consensus        72 ~~~~~~-~~~~~~~~~~D~vilavk~~~   98 (318)
T 3hwr_A           72 QVKVSA-SSDPSAVQGADLVLFCVKSTD   98 (318)
T ss_dssp             EECCEE-ESCGGGGTTCSEEEECCCGGG
T ss_pred             EEeeee-eCCHHHcCCCCEEEEEccccc
Confidence            001011 112111 25899999987653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.41  E-value=0.18  Score=44.05  Aligned_cols=45  Identities=16%  Similarity=0.309  Sum_probs=37.1

Q ss_pred             CCCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            2 FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         2 ~~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|..+.+ +-+..+|+|||+|-.|.++|..|+..+-             .++++++..
T Consensus        23 ll~~~g~~-kL~~~~VlIvGaGGlGs~va~~La~aGV-------------g~ItlvD~D   67 (340)
T 3rui_A           23 ILPDLNLD-IIKNTKVLLLGAGTLGCYVSRALIAWGV-------------RKITFVDNG   67 (340)
T ss_dssp             TCTTCCHH-HHHTCEEEEECCSHHHHHHHHHHHHTTC-------------CEEEEECCC
T ss_pred             hcchhhHH-HHhCCEEEEECCCHHHHHHHHHHHHcCC-------------CEEEEecCC
Confidence            35666665 5566899999999999999999999873             689999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.15  E-value=0.32  Score=42.20  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV   93 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v   93 (283)
                      .++|.|||+|..|.-+|..|++.+              .+|+++.+.       +.     .+.+++.|+.+........
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g--------------~~V~~~~r~-------~~-----~~~~~~~g~~~~~~~~~~~   56 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAG--------------EAINVLARG-------AT-----LQALQTAGLRLTEDGATHT   56 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTT--------------CCEEEECCH-------HH-----HHHHHHTCEEEEETTEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--------------CEEEEEECh-------HH-----HHHHHHCCCEEecCCCeEE
Confidence            368999999999999999999876              789999542       11     2346677887754311111


Q ss_pred             eCCeEEE-cCCcE-EEeeEEEEcCCC
Q 023375           94 DSQKLIL-NDGTE-VPYGLLVWSTGV  117 (283)
Q Consensus        94 ~~~~v~~-~~g~~-i~~d~vi~a~G~  117 (283)
                      ..  +.. .+-+. -++|.||+|+..
T Consensus        57 ~~--~~~~~~~~~~~~~D~Vilavk~   80 (335)
T 3ghy_A           57 LP--VRATHDAAALGEQDVVIVAVKA   80 (335)
T ss_dssp             EC--CEEESCHHHHCCCSEEEECCCH
T ss_pred             Ee--eeEECCHHHcCCCCEEEEeCCc
Confidence            11  111 12111 258999998865

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=92.05  E-value=0.35  Score=44.11  Aligned_cols=50  Identities=18%  Similarity=0.223  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCC
Q 023375           69 RLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        69 ~~~~~~~~~l~~~g-V~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      .+.+.+.+.+.+.| ++++++ +|++|+.+    .|++.+|+++.+|.||+|+|..
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence            56666777788888 999999 89999632    3566788889999999999963

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=92.04  E-value=0.13  Score=49.62  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      .++|+|||||.+|+.+|..|.+.+..     ++. ....+|+|+|+..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~-----~~~-~~~~~V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAAT-----LPA-GSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTT-----SCT-TCEEEEEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcc-----ccc-CCCceEEEEeccC
Confidence            46899999999999999999976521     000 1127899999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.01  E-value=0.17  Score=36.07  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=28.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|+|+|..|..++..|...+.             .+|++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~-------------~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSN-------------YSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSS-------------EEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-------------ceEEEEeCC
Confidence            3689999999999999999987641             688888764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.84  E-value=0.13  Score=41.66  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=48.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD   94 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~   94 (283)
                      ++|+|+|+|..|..+|..|.+.+              .+|++++++       ++.   +.+..++.|+.++.+..++. 
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g--------------~~v~vid~~-------~~~---~~~l~~~~~~~~i~gd~~~~-   55 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRK--------------YGVVIINKD-------REL---CEEFAKKLKATIIHGDGSHK-   55 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTT--------------CCEEEEESC-------HHH---HHHHHHHSSSEEEESCTTSH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC-------HHH---HHHHHHHcCCeEEEcCCCCH-
Confidence            37999999999999999999876              899999764       221   12222345777765521110 


Q ss_pred             CCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           95 SQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        95 ~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                       +.  +..-..-.+|.+|.+++...
T Consensus        56 -~~--l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C           56 -EI--LRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             -HH--HHHHTCCTTCEEEECCSCHH
T ss_pred             -HH--HHhcCcccCCEEEEecCCcH
Confidence             00  00000124899999998643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=91.60  E-value=0.36  Score=42.90  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      ++|+|||||.+|+.+|..|++.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G   23 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAG   23 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC
Confidence            37999999999999999999876

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=91.51  E-value=0.15  Score=47.69  Aligned_cols=48  Identities=15%  Similarity=0.127  Sum_probs=40.0

Q ss_pred             ccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          135 RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       135 ~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +|.+|+++++.+.+++|++||++-+         ..-...|..+|-.+|+.|...+.
T Consensus       496 ri~~~~~~~~~~~~gly~~GegaG~---------a~gi~~Aa~~G~~~a~~i~~~~~  543 (549)
T 3nlc_A          496 CIKRGKDFQSVNLKGFYPAGEGAGY---------AGGILSAGIDGIKVAEAVARDIV  543 (549)
T ss_dssp             ECCCTTTTSCTTCBTEEECHHHHTS---------CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEECCCceECCcCCEEEccccCCh---------hhHHHHHHHHHHHHHHHHHHHhh
Confidence            4788999998889999999999954         44566788899999999887764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=91.25  E-value=0.12  Score=48.66  Aligned_cols=33  Identities=33%  Similarity=0.631  Sum_probs=29.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.+||||||.+|+-+|..|++..             ..+|.|||++
T Consensus         7 yDyIVVGgG~AG~v~A~rLse~~-------------~~~VLllEaG   39 (577)
T 3q9t_A            7 FDFVIVGGGTAGNTVAGRLAENP-------------NVTVLIVEAG   39 (577)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTST-------------TSCEEEECSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCC-------------CCcEEEEecC
Confidence            47999999999999999999764             2799999997

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=91.21  E-value=0.17  Score=46.64  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=28.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|||+|++|+-+|..|++.+              .+|.++|++
T Consensus         6 ~d~~iiG~G~~g~~~a~~l~~~~--------------~~v~~~e~~   37 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAG--------------VQTLMLEMG   37 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEeCC
Confidence            47999999999999999999865              788888765

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=91.21  E-value=0.26  Score=43.30  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +++-+..+|+|||.|..|.++|..|+..+-             .+++|++...
T Consensus       113 q~~L~~~~VlvvG~GglGs~va~~La~aGv-------------g~i~lvD~D~  152 (353)
T 3h5n_A          113 QDKLKNAKVVILGCGGIGNHVSVILATSGI-------------GEIILIDNDQ  152 (353)
T ss_dssp             HHHHHTCEEEEECCSHHHHHHHHHHHHHTC-------------SEEEEEECCB
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHhCCC-------------CeEEEECCCc
Confidence            556677899999999999999999998873             6899998763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.11  E-value=0.25  Score=45.11  Aligned_cols=33  Identities=15%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|+|+|-.|..+|..|...+              .+|++|+.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~--------------~~v~vId~d   35 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGEN--------------NDITIVDKD   35 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTT--------------EEEEEEESC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCC--------------CCEEEEECC
Confidence            468999999999999999998766              999999875

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=91.04  E-value=0.37  Score=44.16  Aligned_cols=51  Identities=10%  Similarity=-0.001  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C----eEEEcCCcEEEeeEEEEcCCCC
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~----~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      .++.+.+.+.+++.|++++++ +|++|..  +    +|++.+|+++.||.||.+++..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            467888888899999999999 8998853  2    4778889999999999999987

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=91.03  E-value=0.081  Score=45.30  Aligned_cols=47  Identities=17%  Similarity=0.361  Sum_probs=32.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS   79 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~   79 (283)
                      .++++|+|||||..|+  |.++.+...            ..+|+++       .+++.+.+..++.|.
T Consensus        82 p~pk~VLIiGgGdG~~--~revlk~~~------------v~~v~~V-------EID~~Vv~~a~~~lp  128 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAM--LREVTRHKN------------VESITMV-------EIDAGVVSFCRQYLP  128 (294)
T ss_dssp             SCCCEEEEESCTTSHH--HHHHHTCTT------------CCEEEEE-------ESCHHHHHHHHHHCH
T ss_pred             CCCCeEEEECCCchHH--HHHHHHcCC------------cceEEEE-------cCCHHHHHHHHhcCc
Confidence            4678999999998875  556654421            2789999       456666666666654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=90.97  E-value=0.18  Score=46.63  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=27.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|||+|++|+-+|..|++.+              .+|.++|++
T Consensus        12 ~d~~iiG~G~~g~~~a~~l~~~~--------------~~v~~~e~~   43 (507)
T 1coy_A           12 VPALVIGSGYGGAVAALRLTQAG--------------IPTQIVEMG   43 (507)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEECC
Confidence            57999999999999999999865              677777764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.89  E-value=0.36  Score=42.26  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|+|+|||..|.++|..+.+++              .+|++++.+
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G--------------~~vv~vd~~   33 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAG--------------MKVVLVDKN   33 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            479999999999999999998887              899999875

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=90.88  E-value=0.14  Score=48.31  Aligned_cols=35  Identities=29%  Similarity=0.505  Sum_probs=29.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      .-.+||||||.+|+-+|..|++..             ..+|.|||++.
T Consensus        19 ~yDyIIVGgG~AG~vlA~RLse~~-------------~~~VLlLEaG~   53 (583)
T 3qvp_A           19 TVDYIIAGGGLTGLTTAARLTENP-------------NISVLVIESGS   53 (583)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTST-------------TCCEEEECSSC
T ss_pred             CccEEEECCcHHHHHHHHHHHhCC-------------CCcEEEEecCC
Confidence            358999999999999999998642             28999999864

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=90.73  E-value=0.31  Score=45.83  Aligned_cols=46  Identities=15%  Similarity=0.302  Sum_probs=37.6

Q ss_pred             CCCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            2 FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         2 ~~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      ++|..+.+ +-+..+|+|||+|-.|.++|..|+..+-             .+++|++...
T Consensus       315 llp~~g~e-kL~~arVLIVGaGGLGs~vA~~La~aGV-------------G~ItLvD~D~  360 (615)
T 4gsl_A          315 ILPDLNLD-IIKNTKVLLLGAGTLGCYVSRALIAWGV-------------RKITFVDNGT  360 (615)
T ss_dssp             TCTTCCHH-HHHTCEEEEECCSHHHHHHHHHHHHTTC-------------CEEEEECCCB
T ss_pred             hcchhhHH-HHhCCeEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCCC
Confidence            35666665 4556799999999999999999999873             6899998864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=90.72  E-value=0.27  Score=41.02  Aligned_cols=38  Identities=16%  Similarity=0.109  Sum_probs=32.4

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++-+..+|+|||.|-.|.++|..|+..+-             .+++|++..
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gv-------------g~i~lvD~d   61 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGV-------------GTLVLADDD   61 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTC-------------SEEEEECCC
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence            45566899999999999999999998872             589999775

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.62  E-value=0.31  Score=39.63  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             HHcccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCC-EEEe
Q 023375           10 EKSRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGV-RLVR   87 (283)
Q Consensus        10 ~~~~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV-~v~~   87 (283)
                      ..-+.++|+|.|| |.+|-++|.+|.+.+              .+|+++.+..-      .+     +.+...++ +++.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G--------------~~V~~~~R~~~------~~-----~~~~~~~~~~~~~   71 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKG--------------HEPVAMVRNEE------QG-----PELRERGASDIVV   71 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESSGG------GH-----HHHHHTTCSEEEE
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCC--------------CeEEEEECChH------HH-----HHHHhCCCceEEE
Confidence            3456789999997 999999999999877              89999987521      11     22444578 7775


Q ss_pred             CceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           88 GIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        88 ~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ..+.    +.+.-.-+   .+|.||.++|...
T Consensus        72 ~Dl~----~~~~~~~~---~~D~vi~~ag~~~   96 (236)
T 3e8x_A           72 ANLE----EDFSHAFA---SIDAVVFAAGSGP   96 (236)
T ss_dssp             CCTT----SCCGGGGT---TCSEEEECCCCCT
T ss_pred             cccH----HHHHHHHc---CCCEEEECCCCCC
Confidence            5332    11110001   3899999999765

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=90.36  E-value=0.41  Score=43.39  Aligned_cols=61  Identities=16%  Similarity=0.136  Sum_probs=46.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C--------CCCCCCHHHHHHHHHHHHhCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E--------ILSSFDDRLRHYATTQLSKSGV   83 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~--------~l~~~~~~~~~~~~~~l~~~gV   83 (283)
                      +..+|.|||.|+.|+-+|..|++.+              .+|+.++-+ +        ..|-..+.+.+.+.+.+...++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G--------------~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l   85 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLG--------------HRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRL   85 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCC--------------CcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCe
Confidence            5579999999999999999999987              899999764 1        2344566666666676666655


Q ss_pred             EEEe
Q 023375           84 RLVR   87 (283)
Q Consensus        84 ~v~~   87 (283)
                      .+-+
T Consensus        86 ~~tt   89 (444)
T 3vtf_A           86 SFAE   89 (444)
T ss_dssp             EECS
T ss_pred             eEEc
Confidence            5544

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=90.30  E-value=0.22  Score=43.70  Aligned_cols=64  Identities=16%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC---------C---CCCCHHHHHHHHH
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---------L---SSFDDRLRHYATT   76 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~---------l---~~~~~~~~~~~~~   76 (283)
                      +++-+..+|+|||.|.+|.|+|..|+..+-             .+++|++...+         +   ..++..-.+.+.+
T Consensus        31 q~~L~~~~VlivG~GGlG~~ia~~La~~Gv-------------g~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~   97 (346)
T 1y8q_A           31 QKRLRASRVLLVGLKGLGAEIAKNLILAGV-------------KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLE   97 (346)
T ss_dssp             HHHHHTCEEEEECCSHHHHHHHHHHHHHTC-------------SEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHH
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHH
Confidence            345567899999999999999999998872             59999976422         1   1223334556666


Q ss_pred             HHHhCC--CEE
Q 023375           77 QLSKSG--VRL   85 (283)
Q Consensus        77 ~l~~~g--V~v   85 (283)
                      .|.+.+  |++
T Consensus        98 ~l~~lnp~v~v  108 (346)
T 1y8q_A           98 RAQNLNPMVDV  108 (346)
T ss_dssp             HHHHTCTTSEE
T ss_pred             HHHhHCCCeEE
Confidence            777653  544

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=90.28  E-value=0.27  Score=44.85  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=20.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDF   36 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~   36 (283)
                      ..|+|||||++|+.+|..|++.
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~   32 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQI   32 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhh
Confidence            5799999999999999999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.26  E-value=0.14  Score=44.42  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=29.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||+|..|..+|..++..+              .+|++++.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G--------------~~V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGG--------------FRVKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            468999999999999999999887              999999875

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=90.24  E-value=0.22  Score=46.97  Aligned_cols=33  Identities=30%  Similarity=0.551  Sum_probs=27.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHH-hhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~-~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .-.++|||+|.+|+-+|..|++ .+              .+|.++|++
T Consensus        24 ~~d~iivG~G~~g~~~a~~l~~~~~--------------~~v~~~e~g   57 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKLTENPK--------------IKVLVIEKG   57 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTT--------------CCEEEEESS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC--------------CcEEEEecC
Confidence            3589999999999999999997 44              677777764

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=90.20  E-value=0.28  Score=48.04  Aligned_cols=46  Identities=15%  Similarity=0.180  Sum_probs=36.9

Q ss_pred             CCCCCHHHHc-ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            3 LAGISEEEKS-RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         3 ~~~~~~~~~~-~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      .++.+..++. +..+|+|||.|-.|.++|..|+..+-             .+++|++...
T Consensus       399 ~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gv-------------g~i~l~D~d~  445 (805)
T 2nvu_B          399 EPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-------------RQIHVIDMDT  445 (805)
T ss_dssp             CCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTC-------------CEEEEEECCB
T ss_pred             CCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-------------CcEEEECCCe
Confidence            3444455555 77899999999999999999998872             6999998863

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=90.14  E-value=0.13  Score=48.28  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=27.6

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|||||.+|+-+|..|++-.             +.+|.|+|++
T Consensus         4 D~IIVG~G~aG~v~A~rLse~~-------------~~~VlllEaG   35 (566)
T 3fim_B            4 DYVVVGAGNAGNVVAARLTEDP-------------DVSVLVLEAG   35 (566)
T ss_dssp             EEEESCCSTTHHHHHHHHTTST-------------TCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCc-------------CCcEEEEecC
Confidence            6899999999999999998721             2899999986

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=89.83  E-value=0.39  Score=45.34  Aligned_cols=57  Identities=21%  Similarity=0.202  Sum_probs=38.5

Q ss_pred             CCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCc-chHHHHHHHHHHHHHHHHHhh
Q 023375          133 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA-LAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       133 ~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~-~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .|.|.||...|+ ..|++||+|+|+...- .|...+.. ....|.-.|+.+++++...+.
T Consensus       359 ~GGi~vd~~~~~-~IpGLyAaGe~a~~g~-hGanrl~gnsl~~~~vfGr~Ag~~aa~~~~  416 (602)
T 1kf6_A          359 MGGIETDQNCET-RIKGLFAVGECSSVGL-HGANRLGSNSLAELVVFGRLAGEQATERAA  416 (602)
T ss_dssp             CCEEECCTTSBC-SSBTEEECGGGEECSS-STTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCcc-ccCCEEEccccccccc-cCCCCCccHHHHHHHHHHHHHHHHHHHhhh
Confidence            367899999999 8999999999974210 11111111 123466779999999877653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.65  E-value=0.38  Score=43.84  Aligned_cols=73  Identities=22%  Similarity=0.216  Sum_probs=48.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++|+|||||.+|...|..|.+.+              .+|+++++.     ..+++    .+...+.+++++.+... 
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~g--------------a~V~vi~~~-----~~~~~----~~l~~~~~i~~~~~~~~-   66 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAG--------------ARLTVNALT-----FIPQF----TVWANEGMLTLVEGPFD-   66 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTT--------------BEEEEEESS-----CCHHH----HHHHTTTSCEEEESSCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCc--------------CEEEEEcCC-----CCHHH----HHHHhcCCEEEEECCCC-
Confidence            4579999999999999999999887              899999863     22333    22233356777654211 


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                        ++.+       -.+|.||.+||..
T Consensus        67 --~~~l-------~~~~lVi~at~~~   83 (457)
T 1pjq_A           67 --ETLL-------DSCWLAIAATDDD   83 (457)
T ss_dssp             --GGGG-------TTCSEEEECCSCH
T ss_pred             --cccc-------CCccEEEEcCCCH
Confidence              0000       1367788887765

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=89.57  E-value=0.2  Score=46.68  Aligned_cols=32  Identities=38%  Similarity=0.681  Sum_probs=27.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.++|||+|.+|+-+|..|++. +              .+|.++|++
T Consensus        14 ~d~~ivG~G~~G~~~a~~l~~~~~--------------~~v~~~e~g   46 (546)
T 2jbv_A           14 FDYIVVGGGSAGAAVAARLSEDPA--------------VSVALVEAG   46 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTT--------------SCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC--------------CCEEEEecC
Confidence            5899999999999999999875 3              678888775

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=89.44  E-value=0.36  Score=43.09  Aligned_cols=47  Identities=13%  Similarity=-0.002  Sum_probs=38.1

Q ss_pred             ccC-CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          137 GID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       137 ~Vd-~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      .+| ++|+++..|++|++|++.++..+.|+    -.-|.|...|..|++++.
T Consensus       352 ~~~~~tmes~~~~gly~~GE~ldv~g~~GG----ynlq~a~~sg~~ag~~~~  399 (401)
T 2gqf_A          352 VISSKTMESNQVSGLYFIGEVLDVTGWLGG----YNFQWAWSSAYACALSIS  399 (401)
T ss_dssp             GBCTTTCBBSSSTTEEECGGGBSCEECTTT----HHHHHHHHHHHHHHHHHH
T ss_pred             cCChhhccccCCCCEEEEEEeEEeccCCCC----HHHHHHHHHHHHHHHHHh
Confidence            367 78998899999999999997655553    356789999999998874

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=89.42  E-value=0.38  Score=40.65  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||+|..|..+|..++..+              .+|++++++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G--------------~~V~l~d~~   36 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHG--------------FAVTAYDIN   36 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence            468999999999999999999887              899999775

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=88.99  E-value=0.35  Score=41.74  Aligned_cols=40  Identities=18%  Similarity=0.054  Sum_probs=28.0

Q ss_pred             CHHHHcccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            7 SEEEKSRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         7 ~~~~~~~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+++..+.++|+|.|| |++|-.++..|.+.+              .+|+++.+.
T Consensus        12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G--------------~~V~~~~r~   52 (347)
T 4id9_A           12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQG--------------RTVRGFDLR   52 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHTT--------------CCEEEEESS
T ss_pred             CcccccCCCEEEEECCCChHHHHHHHHHHhCC--------------CEEEEEeCC
Confidence            3445567789999997 999999999999876              788888775

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=88.99  E-value=0.41  Score=44.93  Aligned_cols=43  Identities=14%  Similarity=0.285  Sum_probs=34.8

Q ss_pred             CCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            4 AGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         4 ~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      |+.+. ++-+..+|+|||+|-.|.++|..|+..+-             .+++|++..
T Consensus       318 ~~~gq-~kL~~~kVLIVGaGGLGs~va~~La~aGV-------------G~ItLvD~D  360 (598)
T 3vh1_A          318 PDLNL-DIIKNTKVLLLGAGTLGCYVSRALIAWGV-------------RKITFVDNG  360 (598)
T ss_dssp             TTCCH-HHHHTCEEEEECCSHHHHHHHHHHHTTTC-------------CEEEEECCS
T ss_pred             chhhH-HHHhCCeEEEECCCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence            44443 45566899999999999999999998873             689999775

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=88.91  E-value=0.43  Score=40.95  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..+.++|.|||.|..|..+|..|++.+              .+|+++++.
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G--------------~~V~~~dr~   53 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNG--------------FKVTVWNRT   53 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            3456689999999999999999999887              899999775

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=88.73  E-value=0.3  Score=46.32  Aligned_cols=41  Identities=27%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      .+++-+..+|+|||.|..|.++|..|+..+-             .+++|++...
T Consensus        11 ~Q~kL~~s~VlVVGaGGLGsevak~La~aGV-------------G~ItlvD~D~   51 (640)
T 1y8q_B           11 LAEAVAGGRVLVVGAGGIGCELLKNLVLTGF-------------SHIDLIDLDT   51 (640)
T ss_dssp             HHHHHHHCEEEEECCSHHHHHHHHHHHHHTC-------------CEEEEEECCB
T ss_pred             HHHHHhcCeEEEECcCHHHHHHHHHHHHcCC-------------CeEEEecCCE
Confidence            3455567899999999999999999998873             6999998763

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=88.51  E-value=0.23  Score=37.34  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=29.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|+|||+|..|..+|..|...+              .+|+++++.
T Consensus        19 ~~~~~v~iiG~G~iG~~~a~~l~~~g--------------~~v~v~~r~   53 (144)
T 3oj0_A           19 NGGNKILLVGNGMLASEIAPYFSYPQ--------------YKVTVAGRN   53 (144)
T ss_dssp             HCCCEEEEECCSHHHHHHGGGCCTTT--------------CEEEEEESC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcCC
Confidence            44789999999999999999887755              678888764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=88.46  E-value=0.49  Score=40.30  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||+|..|..+|..|+..+              .+|++++++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G--------------~~V~~~d~~   47 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATG--------------HTVVLVDQT   47 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            468999999999999999999876              899999775

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=88.03  E-value=0.59  Score=42.81  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=32.7

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      ++...++|.|||.|..|.-+|..|++. +              . +|++++.+
T Consensus        14 ~~~~~mkIaVIGlG~mG~~lA~~la~~~G--------------~~~V~~~D~~   52 (478)
T 3g79_A           14 ERGPIKKIGVLGMGYVGIPAAVLFADAPC--------------FEKVLGFQRN   52 (478)
T ss_dssp             HHCSCCEEEEECCSTTHHHHHHHHHHSTT--------------CCEEEEECCC
T ss_pred             hcCCCCEEEEECcCHHHHHHHHHHHHhCC--------------CCeEEEEECC
Confidence            445667999999999999999999988 7              8 99999876

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=87.56  E-value=0.6  Score=39.60  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=28.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||+|..|..+|..|++.+              .+|++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g--------------~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGG--------------NDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence            58999999999999999999876              899999664

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=87.54  E-value=0.71  Score=38.06  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ....++|.|||.|..|..+|..|++.+              .+|+++++.
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G--------------~~V~~~~r~   51 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLG--------------HEVTIGTRD   51 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            345689999999999999999999876              899999875

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=87.41  E-value=0.67  Score=37.24  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=28.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|.|||+|..|..+|..|++.+              .+|++++++
T Consensus        17 ~~~~~I~iiG~G~mG~~la~~l~~~g--------------~~V~~~~~~   51 (209)
T 2raf_A           17 FQGMEITIFGKGNMGQAIGHNFEIAG--------------HEVTYYGSK   51 (209)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECTT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEcCC
Confidence            34568999999999999999999876              789988765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=87.37  E-value=0.66  Score=40.30  Aligned_cols=33  Identities=15%  Similarity=0.106  Sum_probs=28.8

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      ..+|+|||+|..|..+|..|+..+              . +|+|++.+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g--------------~~~V~L~D~~   42 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRE--------------LADVVLYDVV   42 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEECC
Confidence            468999999999999999999765              5 89999876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=87.36  E-value=0.63  Score=39.00  Aligned_cols=31  Identities=19%  Similarity=0.055  Sum_probs=28.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|.|||+|..|..+|..|++.+              .+|++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g--------------~~V~~~~r~   32 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQG--------------HEVQGWLRV   32 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhCC--------------CCEEEEEcC
Confidence            7999999999999999999876              789999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=87.13  E-value=0.69  Score=41.02  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|+|+|+|.+|..+|..+..++              .+|+++++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG--------------a~V~v~D~~  216 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG--------------AKTTGYDVR  216 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT--------------CEEEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            4579999999999999999999887              899999765

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=87.11  E-value=0.45  Score=47.66  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +++-+..+|+|||+|..|.|+|..|+..+-.        ..++.+|+|++...
T Consensus       420 q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~--------~g~~G~i~lvD~D~  464 (1015)
T 3cmm_A          420 QKKIANSKVFLVGSGAIGCEMLKNWALLGLG--------SGSDGYIVVTDNDS  464 (1015)
T ss_dssp             HHHHHTCEEEEECCSHHHHHHHHHHHHHTTT--------CSTTCEEEEECCCB
T ss_pred             HHHHhcCeEEEEecCHHHHHHHHHHHHcCcC--------cCCCCeEEEEeCCE
Confidence            3455678999999999999999999998720        01124999998753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=87.08  E-value=0.69  Score=39.83  Aligned_cols=36  Identities=11%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +...++|.|||.|..|..+|..|++.+              .+|+++++.
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G--------------~~V~~~dr~   63 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAG--------------YALQVWNRT   63 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCC--------------CeEEEEcCC
Confidence            345579999999999999999999877              899999764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=86.96  E-value=0.5  Score=43.05  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..++|.|||+|..|..+|..++..+              .+|++++.+
T Consensus        52 ~~i~kVaVIGaG~MG~~IA~~la~aG--------------~~V~l~D~~   86 (460)
T 3k6j_A           52 YDVNSVAIIGGGTMGKAMAICFGLAG--------------IETFLVVRN   86 (460)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEECc
Confidence            45579999999999999999999887              999999876

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=86.96  E-value=0.65  Score=38.83  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|.|+|++|-.++..|.+.+              .+|+.+.+.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g--------------~~V~~~~r~   35 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQG--------------HEVTGLRRS   35 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            468999999999999999999876              889999876

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.86  E-value=0.66  Score=37.47  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=28.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|.|||+|..|..+|..|.+.+              .+|++++++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g--------------~~V~~~~r~   60 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSG--------------FKVVVGSRN   60 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            3468999999999999999998766              788888764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.72  E-value=0.7  Score=38.56  Aligned_cols=70  Identities=17%  Similarity=0.021  Sum_probs=49.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD   94 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~   94 (283)
                      ++|+|.|+|++|-.++..|.+.+              .+|+.+.+..-      .     .+.+...+++++...+.+++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g--------------~~V~~~~r~~~------~-----~~~~~~~~~~~~~~D~~d~~   60 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQG--------------WRIIGTSRNPD------Q-----MEAIRASGAEPLLWPGEEPS   60 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGT--------------CEEEEEESCGG------G-----HHHHHHTTEEEEESSSSCCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCC--------------CEEEEEEcChh------h-----hhhHhhCCCeEEEecccccc
Confidence            68999999999999999998876              89999987521      1     12344567887765333322


Q ss_pred             CCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           95 SQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        95 ~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                           +     -.+|.||.++|...
T Consensus        61 -----~-----~~~d~vi~~a~~~~   75 (286)
T 3ius_A           61 -----L-----DGVTHLLISTAPDS   75 (286)
T ss_dssp             -----C-----TTCCEEEECCCCBT
T ss_pred             -----c-----CCCCEEEECCCccc
Confidence                 1     13799999998654

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=86.53  E-value=0.56  Score=43.56  Aligned_cols=61  Identities=21%  Similarity=0.212  Sum_probs=43.3

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC---------C---CCCCHHHHHHHHH
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---------L---SSFDDRLRHYATT   76 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~---------l---~~~~~~~~~~~~~   76 (283)
                      +++-+..+|+|||.|..|.|+|..|+..+-             .+++|++...+         +   ..++..-.+.+.+
T Consensus        27 q~~L~~~~VlvvG~GGlGseiak~La~aGV-------------g~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~   93 (531)
T 1tt5_A           27 QEALESAHVCLINATATGTEILKNLVLPGI-------------GSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAME   93 (531)
T ss_dssp             HHHHHHCEEEEECCSHHHHHHHHHHHTTTC-------------SEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHH
T ss_pred             HHHHhcCeEEEECcCHHHHHHHHHHHHcCC-------------CeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHH
Confidence            344566899999999999999999998873             68999987632         1   1123333455666


Q ss_pred             HHHhCC
Q 023375           77 QLSKSG   82 (283)
Q Consensus        77 ~l~~~g   82 (283)
                      .+.+.+
T Consensus        94 ~l~~lN   99 (531)
T 1tt5_A           94 FLQELN   99 (531)
T ss_dssp             HHHTTC
T ss_pred             HHHHhC
Confidence            677664

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=86.48  E-value=0.58  Score=40.71  Aligned_cols=43  Identities=19%  Similarity=0.173  Sum_probs=31.5

Q ss_pred             CCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            6 ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         6 ~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+++.....+|+|||+|..|..+|..|+..+.            ..+++|++..
T Consensus        11 ~~~~~~~~~~kV~ViGaG~vG~~~a~~l~~~~~------------~~el~L~Di~   53 (331)
T 4aj2_A           11 LLKEEQVPQNKITVVGVGAVGMACAISILMKDL------------ADELALVDVI   53 (331)
T ss_dssp             CCC---CCSSEEEEECCSHHHHHHHHHHHHTTC------------CSEEEEECSC
T ss_pred             ccccccCCCCEEEEECCCHHHHHHHHHHHhCCC------------CceEEEEeCC
Confidence            344456777899999999999999999986541            1489999753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=86.46  E-value=0.78  Score=41.03  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|+|+|+|.+|..+|..+..++              .+|++++..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG--------------a~V~v~D~~  222 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG--------------AVVSATDVR  222 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--------------CEEEEEcCC
Confidence            4579999999999999999999887              899999765

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=86.41  E-value=0.65  Score=41.70  Aligned_cols=33  Identities=12%  Similarity=0.165  Sum_probs=29.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|+|||.|..|..+|..|...+              .+|++|+.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g--------------~~vvvId~d   36 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSG--------------VKMVVLDHD   36 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--------------CCEEEEECC
Confidence            358999999999999999999876              899999765

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=86.24  E-value=0.78  Score=39.28  Aligned_cols=32  Identities=22%  Similarity=0.183  Sum_probs=27.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc--EEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~--~V~li~~~   60 (283)
                      .+|+|||+|..|..+|..|+..+              .  +|++++.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g--------------~~~eV~L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRG--------------SCSELVLVDRD   34 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--------------CCCEEEEEeCC
Confidence            37999999999999999998765              4  89999764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=86.18  E-value=0.85  Score=39.23  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      .++|+|||+|..|..+|..|+..+              . +|++++.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g--------------~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDN--------------LADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--------------CceEEEEeCC
Confidence            368999999999999999998765              5 89999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.12  E-value=0.89  Score=40.04  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=30.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|+|+|.+|..+|..+...+              .+|+++++.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~G--------------a~V~~~d~~  198 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMG--------------AQVTILDVN  198 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEECC
Confidence            4579999999999999999999887              899999764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.08  E-value=0.94  Score=36.16  Aligned_cols=71  Identities=14%  Similarity=0.041  Sum_probs=46.9

Q ss_pred             eEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375           16 HCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD   94 (283)
Q Consensus        16 ~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~   94 (283)
                      +|+|.|| |.+|-+++.+|.+.+              .+|+++.+..      ..+     +.+...+++++...+.+.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g--------------~~V~~~~R~~------~~~-----~~~~~~~~~~~~~D~~d~~   56 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRG--------------HEVLAVVRDP------QKA-----ADRLGATVATLVKEPLVLT   56 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESCH------HHH-----HHHTCTTSEEEECCGGGCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCC--------------CEEEEEEecc------ccc-----ccccCCCceEEeccccccc
Confidence            6999997 999999999999876              8999997751      111     1233457777654322111


Q ss_pred             CCeEEEcCCcEEEeeEEEEcCCCC
Q 023375           95 SQKLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        95 ~~~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      .   ..-.    .+|.||.++|..
T Consensus        57 ~---~~~~----~~d~vi~~ag~~   73 (224)
T 3h2s_A           57 E---ADLD----SVDAVVDALSVP   73 (224)
T ss_dssp             H---HHHT----TCSEEEECCCCC
T ss_pred             H---hhcc----cCCEEEECCccC
Confidence            1   0001    379999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=85.98  E-value=0.96  Score=35.92  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             CeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 023375           15 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV   93 (283)
Q Consensus        15 ~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v   93 (283)
                      ++|+|.|| |.+|-.++..|.+.+              .+|+++.+..      +.+.     .+. .+++++...+.+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g--------------~~V~~~~R~~------~~~~-----~~~-~~~~~~~~D~~d~   54 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRG--------------HEVTAIVRNA------GKIT-----QTH-KDINILQKDIFDL   54 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESCS------HHHH-----HHC-SSSEEEECCGGGC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCC--------------CEEEEEEcCc------hhhh-----hcc-CCCeEEeccccCh
Confidence            36999995 999999999999876              8999998752      1111     122 5677665422211


Q ss_pred             eCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           94 DSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        94 ~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      +.   ..    .-.+|.||.++|..+
T Consensus        55 ~~---~~----~~~~d~vi~~ag~~~   73 (221)
T 3ew7_A           55 TL---SD----LSDQNVVVDAYGISP   73 (221)
T ss_dssp             CH---HH----HTTCSEEEECCCSST
T ss_pred             hh---hh----hcCCCEEEECCcCCc
Confidence            11   00    013799999999744

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.92  E-value=0.99  Score=35.33  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=28.9

Q ss_pred             CeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|.|| |.+|-+++..|.+.+              .+|+++.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g--------------~~V~~~~r~   36 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAG--------------YEVTVLVRD   36 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCC--------------CeEEEEEeC
Confidence            68999997 999999999999876              899999886

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=85.87  E-value=0.82  Score=39.66  Aligned_cols=32  Identities=22%  Similarity=0.149  Sum_probs=28.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||+|..|..+|..|++.+              .+|+++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g--------------~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKG--------------QSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCC
Confidence            68999999999999999998876              789999654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=85.70  E-value=0.88  Score=38.83  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=29.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|.|||.|..|..+|..|+ .+              .+|++++++
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG--------------~~V~v~d~~   43 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SK--------------HEVVLQDVS   43 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TT--------------SEEEEECSC
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cC--------------CEEEEEECC
Confidence            35689999999999999999999 87              899999764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=85.68  E-value=2.1  Score=38.66  Aligned_cols=60  Identities=20%  Similarity=0.154  Sum_probs=40.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C--------CCCCCCHHHHHHHHHHHHhCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E--------ILSSFDDRLRHYATTQLSKSGV   83 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~--------~l~~~~~~~~~~~~~~l~~~gV   83 (283)
                      ...+..|||.|..|.-+|..|++.+              .+|+.++.+ .        ..|...+.+.+.+.+.+...++
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G--------------~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l   75 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHG--------------VDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKL   75 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCC--------------CEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCce
Confidence            3457899999999999999999987              899999875 2        1233444444444444444444


Q ss_pred             EEE
Q 023375           84 RLV   86 (283)
Q Consensus        84 ~v~   86 (283)
                      .+-
T Consensus        76 ~~t   78 (431)
T 3ojo_A           76 KVS   78 (431)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=85.58  E-value=0.85  Score=41.77  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|.|||.|..|.-+|..|++.+              .+|++++.+
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G--------------~~V~~~d~~   40 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIG--------------HDVFCLDVD   40 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCC--------------CEEEEEECC
Confidence            4579999999999999999999887              899999764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=85.52  E-value=1  Score=40.05  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +..+|||+|+|.+|+.+|..+...+.             .+|+++++.-
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga-------------~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGA-------------TKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC-------------CEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEECCC
Confidence            44799999999999999999998771             4999999873

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=85.47  E-value=0.95  Score=38.09  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=27.3

Q ss_pred             CeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|.|| |++|-.++..|.+.+              .+|+.+.++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G--------------~~V~~l~R~   33 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARG--------------HEVTLVSRK   33 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            47999997 999999999999877              778877664

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=85.31  E-value=0.63  Score=44.30  Aligned_cols=53  Identities=11%  Similarity=0.024  Sum_probs=38.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS   81 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~   81 (283)
                      -.++|||+|..|.-+|+.|++.+              ++|.+|+++ .+...........+.+++.+.
T Consensus         9 ~D~~i~GtGl~~~~~a~~~~~~g--------------~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~   62 (650)
T 1vg0_A            9 FDVIVIGTGLPESIIAAACSRSG--------------QRVLHVDSRSYYGGNWASFSFSGLLSWLKEY   62 (650)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCGGGCEECHHHHHHHHHHT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCC--------------CEEEEEcCCCcccCccccccHHHHHHHHHHh
Confidence            58999999999999999999987              899999998 444322211133455555544

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=85.25  E-value=2.2  Score=36.44  Aligned_cols=34  Identities=12%  Similarity=0.128  Sum_probs=28.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      ..++|.|||.|..|..+|..|++.+              . +|+++++.
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G--------------~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAG--------------AIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHS--------------CCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCC--------------CCeEEEEcCC
Confidence            3468999999999999999999876              6 89999764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=85.13  E-value=0.58  Score=39.76  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=28.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||+|..|.-+|..|++.+              .+|+++.++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g--------------~~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSL--------------PHTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHC--------------TTCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEEec
Confidence            58999999999999999999876              788888876

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=85.11  E-value=1.2  Score=42.33  Aligned_cols=43  Identities=19%  Similarity=0.051  Sum_probs=35.5

Q ss_pred             CCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          139 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       139 d~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +++|+++..+++|++|+++...          --..|..||..|+.|+...+.
T Consensus       370 ~~tle~k~~~gLf~AGqi~g~~----------Gy~eA~a~G~~AG~naa~~~~  412 (641)
T 3cp8_A          370 RSTMETRPVENLFFAGQINGTS----------GYEEAAAQGLMAGINAVRKIL  412 (641)
T ss_dssp             CTTSBBSSSBTEEECSGGGTBC----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCcCCEEEEEeecCCc----------cHHHHHHHHHHHHHHHHHHhc
Confidence            4688998899999999999641          233788999999999988887

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=85.10  E-value=0.9  Score=41.25  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||.|..|.-+|..|++.+              .+|++++.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G--------------~~V~~~D~~   34 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELG--------------ANVRCIDTD   34 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcC--------------CEEEEEECC
Confidence            58999999999999999999887              899999765

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=85.09  E-value=0.8  Score=39.80  Aligned_cols=37  Identities=16%  Similarity=0.065  Sum_probs=29.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +...+|.|||+|..|..+|..|+..+-            -.+|++++..
T Consensus        19 ~~~~kV~ViGaG~vG~~~a~~la~~g~------------~~ev~L~Di~   55 (330)
T 3ldh_A           19 RSYNKITVVGCDAVGMADAISVLMKDL------------ADEVALVDVM   55 (330)
T ss_dssp             CCCCEEEEESTTHHHHHHHHHHHHHCC------------CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC------------CCeEEEEECC
Confidence            356899999999999999999987651            0389999764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=85.05  E-value=1.4  Score=38.85  Aligned_cols=34  Identities=12%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|+|+|+|.+|..+|..+.+++              .+|.+++..
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G--------------~~vi~~d~~   46 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMG--------------YKIAVLDPT   46 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEeCC
Confidence            4579999999999999999999887              888888864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=85.05  E-value=1  Score=40.29  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=29.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|+|+|+|.+|..+|..+..++              .+|+++++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--------------a~V~v~D~~  204 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG--------------AIVRAFDTR  204 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEcCC
Confidence            3579999999999999999998887              889998765

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=85.01  E-value=2.9  Score=34.99  Aligned_cols=83  Identities=13%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             cCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCH-HHHHHHHHHHHhCCCEEEeCceE
Q 023375           14 LLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD-RLRHYATTQLSKSGVRLVRGIVK   91 (283)
Q Consensus        14 ~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~-~~~~~~~~~l~~~gV~v~~~~V~   91 (283)
                      .++|+|.|| |..|-.++..|.+.+              .+|+++.+...- ...+ +-.+.+ +.+...|++++...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g--------------~~V~~~~R~~~~-~~~~~~~~~~~-~~l~~~~v~~v~~D~~   65 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAG--------------NPTYALVRKTIT-AANPETKEELI-DNYQSLGVILLEGDIN   65 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHT--------------CCEEEEECCSCC-SSCHHHHHHHH-HHHHHTTCEEEECCTT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCC--------------CcEEEEECCCcc-cCChHHHHHHH-HHHHhCCCEEEEeCCC
Confidence            368999996 999999999999876              788888876311 1122 222222 3455678887654221


Q ss_pred             EEeCCeEE-EcCCcEEEeeEEEEcCCCC
Q 023375           92 DVDSQKLI-LNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        92 ~v~~~~v~-~~~g~~i~~d~vi~a~G~~  118 (283)
                      +.  +.+. .-+    .+|.||.++|..
T Consensus        66 d~--~~l~~~~~----~~d~vi~~a~~~   87 (307)
T 2gas_A           66 DH--ETLVKAIK----QVDIVICAAGRL   87 (307)
T ss_dssp             CH--HHHHHHHT----TCSEEEECSSSS
T ss_pred             CH--HHHHHHHh----CCCEEEECCccc
Confidence            11  0000 001    278888888754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=84.97  E-value=1.1  Score=39.71  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=30.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..+|+|+|+|.+|+.+|..|...+.             .+|+++++.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~-------------~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGV-------------KNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-------------CEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCC-------------CeEEEEECC
Confidence            45799999999999999999998761             489999987

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=84.96  E-value=1.1  Score=38.08  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=30.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+++.|||.|.+|..+|..+..++              .+|+++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G--------------~~V~~~d~~  189 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALG--------------ANVKVGARS  189 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            4579999999999999999999877              899999764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=84.80  E-value=2.5  Score=38.29  Aligned_cols=60  Identities=13%  Similarity=0.277  Sum_probs=41.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC--------CCCCCHHHHHHHHHHHHhCCCE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI--------LSSFDDRLRHYATTQLSKSGVR   84 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~--------l~~~~~~~~~~~~~~l~~~gV~   84 (283)
                      ..++.|||.|..|.-+|..|++.+              .+|++++.+ ..        .|...+.+.+.+.+.+...++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G--------------~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~   73 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFG--------------HEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLS   73 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEE
Confidence            468999999999999999999987              899999875 21        2333444544444444444455


Q ss_pred             EEe
Q 023375           85 LVR   87 (283)
Q Consensus        85 v~~   87 (283)
                      +-.
T Consensus        74 ~tt   76 (446)
T 4a7p_A           74 FTT   76 (446)
T ss_dssp             EES
T ss_pred             EEC
Confidence            443

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=84.77  E-value=1.2  Score=42.55  Aligned_cols=51  Identities=12%  Similarity=-0.003  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC---eEEE---cCCc--EEEeeEEEEcCCCC
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLIL---NDGT--EVPYGLLVWSTGVG  118 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~---~v~~---~~g~--~i~~d~vi~a~G~~  118 (283)
                      ..+...+.+.+.+.||+++.+ .|.++.  ++   +|..   .+|+  .+.++.||+|||..
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            356666777777889999999 788874  33   3443   4565  48999999999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=84.66  E-value=1.1  Score=39.50  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=30.4

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -..++|+|+|+|.+|..+|..+..++              .+|+++++.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~G--------------a~V~~~d~~  200 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMG--------------ATVTVLDIN  200 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCC
Confidence            34689999999999999999998887              889999764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=84.59  E-value=1.1  Score=37.48  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=29.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++++|+|+|-+|..+|..|++.+              .+|+++++.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G--------------~~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLD--------------CAVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC--------------CEEEEEECC
Confidence            3578999999999999999999877              889998664

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.56  E-value=0.91  Score=41.35  Aligned_cols=80  Identities=23%  Similarity=0.283  Sum_probs=47.0

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceE
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVK   91 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~   91 (283)
                      +..++|+|+|||-+|..+|..|.+.               .+|.+||.++       +-.+.+.+.|.  +..++.+..+
T Consensus       233 ~~~~~v~I~GgG~ig~~lA~~L~~~---------------~~v~iIE~d~-------~r~~~la~~l~--~~~Vi~GD~t  288 (461)
T 4g65_A          233 KPYRRIMIVGGGNIGASLAKRLEQT---------------YSVKLIERNL-------QRAEKLSEELE--NTIVFCGDAA  288 (461)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHTTT---------------SEEEEEESCH-------HHHHHHHHHCT--TSEEEESCTT
T ss_pred             ccccEEEEEcchHHHHHHHHHhhhc---------------CceEEEecCH-------HHHHHHHHHCC--CceEEecccc
Confidence            4567999999999999999988532               7899997752       22233333332  3444443110


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      +   ..+ +.+...-.+|.++.+|+.--
T Consensus       289 d---~~~-L~ee~i~~~D~~ia~T~~De  312 (461)
T 4g65_A          289 D---QEL-LTEENIDQVDVFIALTNEDE  312 (461)
T ss_dssp             C---HHH-HHHTTGGGCSEEEECCSCHH
T ss_pred             c---hhh-HhhcCchhhcEEEEcccCcH
Confidence            0   001 11111235899999888643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=84.51  E-value=1.2  Score=37.77  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=30.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|.|||.|.+|..+|..+..++              .+|+++++.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G--------------~~V~~~dr~  187 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALG--------------AKVKVGARE  187 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCC--------------CEEEEEECC
Confidence            4579999999999999999999877              899999764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=84.49  E-value=0.96  Score=40.79  Aligned_cols=31  Identities=23%  Similarity=0.192  Sum_probs=28.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|.|||.|..|..+|..|++.+              .+|++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G--------------~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARG--------------HEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            7999999999999999999877              899999764

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=84.45  E-value=1  Score=42.97  Aligned_cols=44  Identities=11%  Similarity=0.039  Sum_probs=33.3

Q ss_pred             CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          140 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       140 ~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ...+| +.|++||+|||+...       .-..+..+..+|.+++.++...+.
T Consensus       446 ~~~~t-~v~gl~a~Ge~~~~~-------~hg~~~~sl~~g~~ag~~a~~~~~  489 (662)
T 3gyx_A          446 YNRMT-TVEGLWTCADGVGAS-------GHKFSSGSHAEGRIVGKQMVRWYL  489 (662)
T ss_dssp             CTTBC-SSBTEECCSSSBCSC-------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCC-ccCCeEeCccccccc-------cCccHhHHHHHHHHHHHHHHHHHh
Confidence            56677 899999999998421       122266778889999999888876

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=84.45  E-value=1.1  Score=38.75  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=28.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      .++|+|||+|..|.-+|..|+..+              . +|++++.+
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g--------------~~~V~L~Di~   47 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKD--------------LGDVYMFDII   47 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEECC
Confidence            368999999999999999998765              5 89999876

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=84.31  E-value=1.1  Score=40.51  Aligned_cols=51  Identities=12%  Similarity=-0.018  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEe----CCe---EEEcCCcEEEeeEEEEcCCCCCc
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVD----SQK---LILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~----~~~---v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+.+.+.+.+++.|++++++ +|++|.    ++.   |.+ +|+++.+|.||.++|..+.
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            67777888889999999999 788874    332   444 6888999999999998765

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=84.28  E-value=1.2  Score=35.54  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=27.5

Q ss_pred             eEEEEc-cCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvG-gG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|+| +|..|..+|..|.+.+              .+|++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g--------------~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLG--------------HEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTT--------------CEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            699999 9999999999998766              789999764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=84.13  E-value=1.3  Score=38.95  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|+|+|.+|..++..+..++              .+|+++++.
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~G--------------a~V~v~dr~  199 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLG--------------AQVQIFDIN  199 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCC
Confidence            3479999999999999999999887              789999764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=84.07  E-value=1.1  Score=38.55  Aligned_cols=36  Identities=14%  Similarity=0.111  Sum_probs=28.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +..+|+|||+|.+|..+|..|+..+.            -.+|.+++..
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~------------~~ev~L~Di~   41 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQT------------ANELVLIDVF   41 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC------------SSEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC------------CCEEEEEeCC
Confidence            34689999999999999999987541            1389999875

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=84.06  E-value=1.3  Score=41.91  Aligned_cols=44  Identities=16%  Similarity=0.059  Sum_probs=36.3

Q ss_pred             cCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          138 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       138 Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .+++|+++..+++|.+|.+...          .--..|..||.+|+.|..+.+.
T Consensus       380 l~~tLe~k~~~gLf~AGqinGt----------~GyeEAaaqGl~AG~nAa~~~~  423 (637)
T 2zxi_A          380 LYPTLETKKIRGLFHAGNFNGT----------TGYEEAAGQGIVAGINAALRAF  423 (637)
T ss_dssp             BCTTSBBSSSBTEEECGGGGTB----------CSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCccccccCCCCEEEeeecCCc----------chHHHHHHHHHHHHHHHHHHhc
Confidence            4578999889999999999852          2234788999999999988876

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=84.01  E-value=0.48  Score=38.64  Aligned_cols=74  Identities=22%  Similarity=0.203  Sum_probs=45.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV   93 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v   93 (283)
                      .++++|+|+|..|..+|..|.+.+              . |++++++.      +.+     +.+. .|++++.+..++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g--------------~-v~vid~~~------~~~-----~~~~-~~~~~i~gd~~~~   61 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSE--------------V-FVLAEDEN------VRK-----KVLR-SGANFVHGDPTRV   61 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSE--------------E-EEEESCGG------GHH-----HHHH-TTCEEEESCTTCH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCC--------------e-EEEEECCH------HHH-----HHHh-cCCeEEEcCCCCH
Confidence            368999999999999999998765              7 99997642      111     1233 5777766522110


Q ss_pred             eCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375           94 DSQKLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        94 ~~~~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                        +.  +..-..-.+|.+|.+++..
T Consensus        62 --~~--l~~a~i~~ad~vi~~~~~d   82 (234)
T 2aef_A           62 --SD--LEKANVRGARAVIVDLESD   82 (234)
T ss_dssp             --HH--HHHTTCTTCSEEEECCSCH
T ss_pred             --HH--HHhcCcchhcEEEEcCCCc
Confidence              00  0000012489999998754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=83.93  E-value=2.1  Score=38.50  Aligned_cols=49  Identities=18%  Similarity=0.194  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e-EEE-cCCcEEEeeEEEEcCCC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K-LIL-NDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~-v~~-~~g~~i~~d~vi~a~G~  117 (283)
                      .+.+.+.+.+++.|++++++ +|++|+.+  + +.+ .+++++.+|.||+|++.
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPA  288 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCeEEEcCEEEECCCH
Confidence            57778888899999999999 89998642  3 332 35668999999999975

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=83.77  E-value=1.2  Score=39.37  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=29.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|+|+|+|.+|..+|..+..++              .+|+++++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--------------a~V~~~d~~  204 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--------------AVVMATDVR  204 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            4679999999999999999998877              789888765

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=83.65  E-value=1.1  Score=40.78  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|.|||+|..|..+|..|+..+              .+|++++.+
T Consensus        35 ~~~~kV~VIGaG~MG~~iA~~la~~G--------------~~V~l~D~~   69 (463)
T 1zcj_A           35 QPVSSVGVLGLGTMGRGIAISFARVG--------------ISVVAVESD   69 (463)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEECSS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            34578999999999999999999877              899999775

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=83.50  E-value=1.2  Score=38.30  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=27.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc--EEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~--~V~li~~~   60 (283)
                      ++|+|||+|..|..+|..|+..+              .  +|++++.+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g--------------~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKG--------------FAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT--------------CCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--------------CCCeEEEEeCC
Confidence            37999999999999999998765              5  89999764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=83.46  E-value=1.3  Score=37.38  Aligned_cols=32  Identities=19%  Similarity=0.161  Sum_probs=29.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||.|..|..+|..|++.+              .+|++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G--------------~~V~~~dr~   33 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAG--------------CSVTIWNRS   33 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--------------CeEEEEcCC
Confidence            58999999999999999999877              899999775

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=83.33  E-value=1.4  Score=40.84  Aligned_cols=55  Identities=18%  Similarity=0.149  Sum_probs=35.7

Q ss_pred             CccccCCCcccCCCCCEEEeccccccCcCCCCcCCCc-chHHHHHHHHHHHHHHHHHh
Q 023375          134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA-LAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       134 g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~-~~~~A~~qg~~~a~~i~~~~  190 (283)
                      |.|.||...|+ ..|++||+|+|+... ..|...+.. ....|.--|+.+++++....
T Consensus       355 GGi~vd~~~~t-~I~GLyAaGE~a~~g-~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~  410 (540)
T 1chu_A          355 GGVMVDDHGRT-DVEGLYAIGEVSYTG-LHGANRMASNSLLECLVYGWSAAEDITRRM  410 (540)
T ss_dssp             CEEECCTTCBC-SSBTEEECGGGEECS-SSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcEEECCCCCC-ccCCEEecccccccc-ccCCCcCcchhHHHHHHHHHHHHHHHHHhc
Confidence            66788888887 899999999998321 011111121 22346667899998876654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=83.11  E-value=1.4  Score=38.09  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|+|||+|..|..+|..|+..+-            ..+|++++..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~------------~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGI------------TDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC------------CSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC------------CceEEEEecc
Confidence            45789999999999999999987651            0389999763

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=83.08  E-value=1.1  Score=38.33  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=27.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      +|.|||+|..|..+|..|++.+              .+|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g--------------~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNG--------------NEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHC--------------CEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCC--------------CeEEEEEc
Confidence            7999999999999999999876              78999966

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=83.02  E-value=1.4  Score=40.39  Aligned_cols=24  Identities=38%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhh
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      ..+|+|||||.+|+.+|..|++.+
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G   27 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSG   27 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTT
T ss_pred             CceEEEECCCHHHHHHHHHHHHCC
Confidence            358999999999999999999864

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=82.82  E-value=1.5  Score=37.51  Aligned_cols=96  Identities=17%  Similarity=0.292  Sum_probs=52.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCC---EEEeC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGV---RLVRG   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV---~v~~~   88 (283)
                      +...+|+.||+|+.++.. ..+++..             +.+|+-++       .++++.+.+++.+++.|+   +++.+
T Consensus       121 ~~g~rVLDIGcG~G~~ta-~~lA~~~-------------ga~V~gID-------is~~~l~~Ar~~~~~~gl~~v~~v~g  179 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTG-ILLSHVY-------------GMRVNVVE-------IEPDIAELSRKVIEGLGVDGVNVITG  179 (298)
T ss_dssp             CTTCEEEEECCCSSCHHH-HHHHHTT-------------CCEEEEEE-------SSHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             CCcCEEEEECCCccHHHH-HHHHHcc-------------CCEEEEEE-------CCHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            456799999999754422 2233321             17899995       456677777777777664   44333


Q ss_pred             ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccC
Q 023375           89 IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID  139 (283)
Q Consensus        89 ~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd  139 (283)
                             +...+.+   -++|.|+.+.. .+.  .+++.+---+.+.|++.+.
T Consensus       180 -------Da~~l~d---~~FDvV~~~a~-~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          180 -------DETVIDG---LEFDVLMVAAL-AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             -------CGGGGGG---CCCSEEEECTT-CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             -------chhhCCC---CCcCEEEECCC-ccCHHHHHHHHHHHcCCCcEEEEE
Confidence                   2111222   24899988765 333  2333332223445555543

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=82.75  E-value=1.2  Score=35.66  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             cCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|.|| |.+|-.++..|.+.+              .+|+++.+.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g--------------~~V~~~~r~   37 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRG--------------FEVTAVVRH   37 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTT--------------CEEEEECSC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCC--------------CEEEEEEcC
Confidence            468999995 999999999999876              899999886

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=82.75  E-value=1.5  Score=37.62  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|+|||+|..|..+|..++..+.            ..+|.|++..
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~------------~~ev~L~Di~   48 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGI------------ADRLVLLDLS   48 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTC------------CSEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC------------CCEEEEEcCC
Confidence            44789999999999999999876551            1389999876

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=82.72  E-value=1.3  Score=39.97  Aligned_cols=33  Identities=12%  Similarity=0.209  Sum_probs=29.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|.|||.|..|.-+|..|++ +              .+|++++.+
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G--------------~~V~~~D~~   67 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-N--------------HEVVALDIV   67 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-T--------------SEEEEECSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-C--------------CeEEEEecC
Confidence            44689999999999999999987 6              899999875

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=82.67  E-value=1.5  Score=37.87  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=28.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      ..+|+|||+|..|.-+|..|+..+              . +|+|++.+
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g--------------~~~v~L~Di~   37 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKN--------------LGDVVLFDIV   37 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEeCC
Confidence            358999999999999999998765              4 79999865

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=82.59  E-value=1.3  Score=38.05  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=28.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||+|..|..+|..|+...            ...+|++++.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~------------~g~~V~l~D~~   34 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQ------------LARELVLLDVV   34 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT------------CCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC------------CCCEEEEEeCC
Confidence            37999999999999999998742            01799999876

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=82.57  E-value=1.4  Score=40.26  Aligned_cols=34  Identities=24%  Similarity=0.185  Sum_probs=30.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++++|+|+|.+|..+|..|+..+              .+|++.+..
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~G--------------A~Viv~D~~  297 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAG--------------ARVIVTEID  297 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEcCC
Confidence            4589999999999999999999988              899988653

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=82.56  E-value=1.5  Score=37.28  Aligned_cols=33  Identities=18%  Similarity=0.100  Sum_probs=29.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||.|..|..+|..|++.+              .+|++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G--------------~~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAG--------------LSTWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEECC
Confidence            368999999999999999999877              899999664

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=82.50  E-value=1.4  Score=37.95  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=29.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..+|.|||+|..|.-+|..|++.+              .+|+++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G--------------~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENG--------------EEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence            468999999999999999999876              899999663

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=82.32  E-value=1.5  Score=37.45  Aligned_cols=34  Identities=12%  Similarity=0.089  Sum_probs=29.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      +.++++|+|+|.+|-.+|..|.+.+              . +|+++++.
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G--------------~~~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTA--------------AERIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTT--------------CSEEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCC--------------CCEEEEEeCC
Confidence            3578999999999999999999876              5 89999664

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=82.27  E-value=1.9  Score=41.01  Aligned_cols=45  Identities=20%  Similarity=0.159  Sum_probs=36.6

Q ss_pred             ccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          137 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       137 ~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .++.+|+++..+++|++|.+...          .--..|..||.+|+.|....+.
T Consensus       374 ~L~~tle~k~~~gLf~AGqinGt----------tGYeEAaaqGl~AG~nAa~~~~  418 (651)
T 3ces_A          374 DLKPTLESKFIQGLFFAGQINGT----------TGYEEAAAQGLLAGLNAARLSA  418 (651)
T ss_dssp             GBCTTSBBSSSBTEEECSGGGTC----------CCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCccccccCCCCeEEEEEecCC----------cChHHHHHHHHHHHHHHHHHhc
Confidence            45578999889999999999842          2234799999999999988776

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=82.17  E-value=0.79  Score=41.22  Aligned_cols=53  Identities=15%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCeE--EEcCCcEEEeeEEEEcCCCCCc
Q 023375           68 DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~v--~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      ..+.+.+.+.+++.|++++++ +|++|.  ++.+  +..+|+++.+|.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            367777788888899999999 788875  3333  2357889999999999998765

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=82.16  E-value=1.6  Score=38.34  Aligned_cols=34  Identities=15%  Similarity=0.239  Sum_probs=29.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|+|+|+|..|..++..+.+++              .+|.++++.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG--------------~~viv~d~~   44 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMG--------------YKVVVLDPS   44 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            3578999999999999999999987              788888764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=82.08  E-value=1.7  Score=37.70  Aligned_cols=37  Identities=11%  Similarity=0.209  Sum_probs=29.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +...+|+|||+|..|..+|..|+..+-            -.+++|++..
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~------------~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGI------------AQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTC------------CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC------------CCeEEEEeCC
Confidence            456799999999999999999987641            0389999763

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=82.02  E-value=1.3  Score=38.95  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=29.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||+|..|.-+|..|++.+              .+|++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G--------------~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKG--------------QKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            468999999999999999999876              789998663

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=81.85  E-value=1.5  Score=37.78  Aligned_cols=33  Identities=24%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      .++|.|||+|..|..+|..|+..+              . +|++++..
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g--------------~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKE--------------LADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEecc
Confidence            468999999999999999998765              6 89999764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=81.84  E-value=1.1  Score=39.90  Aligned_cols=82  Identities=11%  Similarity=0.103  Sum_probs=48.7

Q ss_pred             cCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHH-----------HhC
Q 023375           14 LLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL-----------SKS   81 (283)
Q Consensus        14 ~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l-----------~~~   81 (283)
                      .++|+|.|| |.+|.+++..|.+.+              .+|+++.++...    ......+.+.+           ...
T Consensus        69 ~~~vlVTGatG~iG~~l~~~L~~~g--------------~~V~~~~R~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~  130 (427)
T 4f6c_A           69 LGNTLLTGATGFLGAYLIEALQGYS--------------HRIYCFIRADNE----EIAWYKLMTNLNDYFSEETVEMMLS  130 (427)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHTTTE--------------EEEEEEEECSSH----HHHHHHHHHHHHHHSCHHHHHHHHT
T ss_pred             CCEEEEecCCcHHHHHHHHHHHcCC--------------CEEEEEECCCCh----HHHHHHHHHHHHHhccccccccccC
Confidence            458999995 999999999997655              899999876311    11222222222           234


Q ss_pred             CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           82 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        82 gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      +++++...+.+.  +.+.    ..-.+|.||-++|...
T Consensus       131 ~v~~v~~Dl~d~--~~l~----~~~~~d~Vih~A~~~~  162 (427)
T 4f6c_A          131 NIEVIVGDFECM--DDVV----LPENMDTIIHAGARTD  162 (427)
T ss_dssp             TEEEEEECC-----CCCC----CSSCCSEEEECCCCC-
T ss_pred             ceEEEeCCCCCc--ccCC----CcCCCCEEEECCcccC
Confidence            677665433221  1111    1124899999998764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=81.80  E-value=1.3  Score=37.27  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=28.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||.|..|..+|..|++.+              .+|++++++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G--------------~~V~~~dr~   33 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAG--------------FDVTVWNRN   33 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHT--------------CCEEEECSS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCC--------------CeEEEEcCC
Confidence            57999999999999999999877              889999775

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=81.64  E-value=1.4  Score=37.13  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=29.0

Q ss_pred             cCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|.|| |++|-.++..|.+.+              .+|+++.+.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g--------------~~V~~~~r~   40 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASG--------------EEVTVLDDL   40 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--------------CCEEEECCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCC--------------CEEEEEecC
Confidence            578999998 999999999999876              788888775

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=81.57  E-value=1.8  Score=36.46  Aligned_cols=33  Identities=15%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++++|+|+|-+|-.+|..|.+.+              .+|+++.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G--------------~~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG--------------LQVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            679999999999999999999887              899999775

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=81.54  E-value=1.3  Score=37.17  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=29.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++++|+|+|-+|-.+|..|.+.+              .+|+++++.
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G--------------~~v~v~~R~  151 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQ--------------QNIVLANRT  151 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTT--------------CEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            3578999999999999999999876              899999775

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=81.54  E-value=1.6  Score=36.82  Aligned_cols=33  Identities=15%  Similarity=0.098  Sum_probs=28.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|.|||.|..|..+|..|...+              .+|++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g--------------~~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEG--------------VTVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            368999999999999999998765              788888653

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=81.50  E-value=1.7  Score=38.08  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|+|+|.+|.++|..+.+.+              .++.+++..
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G--------------~~v~~~~~~   33 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMG--------------FYVIVLDPT   33 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            58999999999999999998876              667766653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=81.49  E-value=1.7  Score=36.25  Aligned_cols=31  Identities=23%  Similarity=0.215  Sum_probs=27.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|.|||+|..|..+|..|.+.+              .+|++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g--------------~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRG--------------HYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            7999999999999999998776              789888653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=81.49  E-value=1.4  Score=37.13  Aligned_cols=40  Identities=28%  Similarity=0.282  Sum_probs=28.2

Q ss_pred             CHHHHcccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            7 SEEEKSRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         7 ~~~~~~~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+....+.++++|.|| |.+|.++|..|++.+              .+|+++.++
T Consensus         5 ~~~~~~~~k~vlITGas~GIG~~~a~~L~~~G--------------~~V~~~~r~   45 (311)
T 3o26_A            5 CPNTVTKRRCAVVTGGNKGIGFEICKQLSSNG--------------IMVVLTCRD   45 (311)
T ss_dssp             -------CCEEEESSCSSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCCccCCCcEEEEecCCchHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            3333445678888885 889999999999877              899999765

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=81.36  E-value=1.8  Score=39.05  Aligned_cols=34  Identities=24%  Similarity=0.176  Sum_probs=30.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|+|+|.|.+|..+|..+..++              .+|++.+..
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~G--------------a~Viv~D~d  252 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMG--------------SIVYVTEID  252 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            4589999999999999999999887              899988754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=81.20  E-value=1.8  Score=36.33  Aligned_cols=34  Identities=18%  Similarity=0.081  Sum_probs=29.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++++|||+|..|-.+|..|.+.+              .+|+++++.
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g--------------~~V~v~~r~  161 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEG--------------AKVFLWNRT  161 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcC--------------CEEEEEECC
Confidence            3478999999999999999998876              788888664

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=81.13  E-value=1.8  Score=36.21  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=27.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||.|..|..+|..|...+.            ..+|+++++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~------------~~~V~~~d~~   35 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGF------------KGKIYGYDIN   35 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC------------CSEEEEECSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCC------------CcEEEEEeCC
Confidence            579999999999999999987650            0288888654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=80.80  E-value=1.3  Score=39.49  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=27.3

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|.|||.|..|.-+|..|++ +              .+|++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G--------------~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-Q--------------NEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T--------------SEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC-C--------------CEEEEEECC
Confidence            79999999999999999997 6              899999764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=80.76  E-value=2.1  Score=36.93  Aligned_cols=34  Identities=6%  Similarity=0.054  Sum_probs=29.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      +.++++|+|+|-+|-.+|..|++.+              . +|+++.+.
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~G--------------a~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDG--------------VKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTT--------------CSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCC--------------CCEEEEEECC
Confidence            4579999999999999999999876              5 89999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=80.63  E-value=2  Score=36.32  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      +.++++|+|+|-+|-.+|..|+..+              . +|+++.+.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G--------------~~~v~i~~R~  160 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHG--------------VQKLQVADLD  160 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CSEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--------------CCEEEEEECC
Confidence            4579999999999999999999876              5 79999664

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=80.51  E-value=1.9  Score=36.75  Aligned_cols=33  Identities=15%  Similarity=0.067  Sum_probs=29.0

Q ss_pred             cCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|.|| |.+|..++..|.+.+              .+|+++.+.
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G--------------~~V~~~~r~   36 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKG--------------YEVYGADRR   36 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            468999997 999999999999876              899999875

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=80.46  E-value=2.1  Score=36.47  Aligned_cols=34  Identities=15%  Similarity=0.055  Sum_probs=29.3

Q ss_pred             ccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|.|| |++|.+++..|.+.+              .+|+++.+.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g--------------~~V~~~~r~   44 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHG--------------YKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            4468999997 999999999999876              889988764

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=80.42  E-value=1.8  Score=38.72  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|+|+|||..|.+++..+.+++              .+|.+++..
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG--------------~~v~v~d~~   67 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMG--------------YRVAVLDPD   67 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEECCC
Confidence            3468999999999999999999887              777777653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=80.42  E-value=1.8  Score=39.36  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||.|..|..+|..|++.+.            +.+|++++++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~------------G~~V~~~d~~   39 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCP------------EIRVTVVDVN   39 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCT------------TSEEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC------------CCEEEEEECC
Confidence            589999999999999999998720            1789999764

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=80.39  E-value=1.3  Score=44.43  Aligned_cols=62  Identities=11%  Similarity=0.144  Sum_probs=44.0

Q ss_pred             HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC------------CCCCHHHHHHHH
Q 023375            8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SSFDDRLRHYAT   75 (283)
Q Consensus         8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l------------~~~~~~~~~~~~   75 (283)
                      .+++-+..+|+|||.|..|.|+|..|+..+-             .+++|++...+-            ..++..-.+.+.
T Consensus        21 ~q~rL~~s~VlIvG~GGlGseiak~La~aGV-------------g~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~   87 (1015)
T 3cmm_A           21 AMLKMQTSNVLILGLKGLGVEIAKNVVLAGV-------------KSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTR   87 (1015)
T ss_dssp             HHHHHTTCEEEEECCSHHHHHHHHHHHHHCC-------------SEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHH
T ss_pred             HHHHHhcCEEEEECCChHHHHHHHHHHHcCC-------------CeEEEecCCEechhhhccccccChhhcChHHHHHHH
Confidence            3456677899999999999999999998873             699999875321            112233345566


Q ss_pred             HHHHhCC
Q 023375           76 TQLSKSG   82 (283)
Q Consensus        76 ~~l~~~g   82 (283)
                      +.|++.+
T Consensus        88 ~~L~~lN   94 (1015)
T 3cmm_A           88 AKLAELN   94 (1015)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHC
Confidence            6676653

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=80.37  E-value=2.2  Score=36.13  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      +.++++|+|+|-+|-.+|..|.+.+              . +|+++.+.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G--------------~~~v~v~nRt  155 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNF--------------AKDIYVVTRN  155 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTT--------------CSEEEEEESC
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcC--------------CCEEEEEeCC
Confidence            3579999999999999999999876              5 89999775

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=80.30  E-value=1.9  Score=36.37  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=27.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||.|..|..+|..|...+              .+|+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g--------------~~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAG--------------YSLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCC--------------CEEEEEeCC
Confidence            48999999999999999998765              788888654

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=80.18  E-value=2.1  Score=38.28  Aligned_cols=35  Identities=14%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             CEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCC
Q 023375           83 VRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        83 V~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      ++++++ +|++|+.+    .|++.+|+++.+|.||+|++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCH
Confidence            789999 89999643    466778889999999999975

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=80.14  E-value=2.2  Score=36.66  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=30.1

Q ss_pred             ccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|+|.|| |++|-.++..|.+.+              .+|+.+.+.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g--------------~~V~~~~r~   58 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLN--------------QVVIGLDNF   58 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEECC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            5679999995 999999999999876              899999875

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=80.11  E-value=2.1  Score=37.04  Aligned_cols=35  Identities=14%  Similarity=0.120  Sum_probs=29.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~   60 (283)
                      .+..+|+|||+|..|..+|..|+..+              . +|+|++..
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~--------------~~~v~L~Di~   40 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKE--------------LGDVVLFDIA   40 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEeCC
Confidence            34579999999999999999998765              4 89999875

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=80.09  E-value=1.9  Score=36.86  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=27.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||+|..|..+|..|+..+.             .+|++++.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~-------------~~v~L~Di~   35 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKEL-------------GDIVLLDIV   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-------------SEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-------------CeEEEEeCC
Confidence            589999999999999999987651             379999865

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=80.06  E-value=2  Score=39.51  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|+|+|.|.+|..+|..+..++              .+|+++++.
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~G--------------a~Viv~d~~  306 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQG--------------ARVSVTEID  306 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence            35679999999999999999998877              889998664

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=80.01  E-value=2.2  Score=34.61  Aligned_cols=32  Identities=16%  Similarity=0.094  Sum_probs=28.2

Q ss_pred             CeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++++|.|| |.+|.++|..|++.+              .+|+++.+.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g--------------~~V~~~~r~   34 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAG--------------HTVIGIDRG   34 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCC--------------CEEEEEeCC
Confidence            57899986 999999999999876              899999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	9e-11
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	7e-10
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	8e-09
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	3e-08
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	6e-08
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-07
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	7e-06
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	7e-06
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	1e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	2e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	4e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	4e-04
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	4e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	8e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.002
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.004

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 57.4 bits (137), Expect = 9e-11
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 7/171 (4%)

Query: 18  VVVGGGPTGVEFSGELSDFIMR-DVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 76
           VV+G G   V F  EL     +  +       +       +  + +     +++R     
Sbjct: 7   VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66

Query: 77  QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG--- 133
                 +  V     D  +  + L+DG  +PYG LV +TG  P  ++ +  L ++ G   
Sbjct: 67  APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC 126

Query: 134 -GRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGKYL 182
              I +D + R  +  DV+A+GD        +G+         A+ QG  +
Sbjct: 127 DDGIFVDAYGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAV 176

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 54.7 bits (130), Expect = 7e-10
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
           V+VG GP G E + +LS      V  +         +        +             +
Sbjct: 4   VIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYR 63

Query: 78  LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIG 137
                +RL          +K+++ +  EVPY  LV +TG     L +   +    G  I 
Sbjct: 64  KRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHT--GRGIL 121

Query: 138 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 186
           ID+  R    +DV+A+GDC+         ++   A+ A  Q + L  +L
Sbjct: 122 IDDNFRTS-AKDVYAIGDCAE-----YSGIIAGTAKAAMEQARVLADIL 164

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 52.1 bits (123), Expect = 8e-09
 Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 13/175 (7%)

Query: 18  VVVGGGPTGVEFSGELSDF-----IMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH 72
           V+VG G  GVE +  L        I                     A +  +        
Sbjct: 7   VIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTP 66

Query: 73  YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 132
            A    +   +   +    + D Q++IL+DG  + Y  LV +TG  P     + +L  + 
Sbjct: 67  DAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLI--PNCELASAA 124

Query: 133 G----GRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGKYL 182
           G      I I+E ++  S   + AVGDC   + +   + V       A  Q + +
Sbjct: 125 GLQVDNGIVINEHMQ-TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKI 178

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 17/109 (15%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--FDDRLRHY 73
              ++GGG  G E +  L                    V  +   +        + L ++
Sbjct: 39  SITIIGGGFLGSELACALGRKAR----------ALGTEVIQLFPEKGNMGKILPEYLSNW 88

Query: 74  ATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV 117
              ++ + GV++     V+ +        + L DG +V    +V + G+
Sbjct: 89  TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 49.4 bits (116), Expect = 6e-08
 Identities = 32/187 (17%), Positives = 50/187 (26%), Gaps = 40/187 (21%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-------------ILS 64
           VVVGGG  G   +  +        +     ++    VTLIE N                 
Sbjct: 6   VVVGGGTGGATAAKYI--------KLADPSIE----VTLIEPNTDYYTCYLSNEVIGGDR 53

Query: 65  SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS---- 120
             +     Y   +     V        D D + +    G E  Y   V + G+       
Sbjct: 54  KLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKI 113

Query: 121 -----TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA 175
                 + +   L    G      +       + +  +GD S          +P     A
Sbjct: 114 EQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANP------MPKSGYSA 167

Query: 176 ERQGKYL 182
             QGK  
Sbjct: 168 NSQGKVA 174

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 44/196 (22%)

Query: 18  VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------- 64
           +V+G    G E   EL           +        +   E  + +S             
Sbjct: 4   IVLGSSHGGYEAVEEL--------LNLHPDA----EIQWYEKGDFISFLSAGMQLYLEGK 51

Query: 65  -SFDDRLRHYATTQLSKSGVRL--------VRGIVKDVDSQKLILNDGTEVPYGLLVWST 115
               + +R+    ++   GV +        ++     V  + L+  +     Y  L+ S 
Sbjct: 52  VKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISP 111

Query: 116 GVGPST--------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKT 166
           G  P                L   P G I  DE+    S  DVFAVGD            
Sbjct: 112 GAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEY-MRTSEPDVFAVGDATLIKYNPADTE 170

Query: 167 VLPALAQVAERQGKYL 182
           V  ALA  A +QG++ 
Sbjct: 171 VNIALATNARKQGRFA 186

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.4 bits (99), Expect = 7e-06
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 16/103 (15%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 75
             +++GGG  G+E +               +  +   HV LI    +    D+ L +   
Sbjct: 34  EAIIIGGGFIGLELA--------------GNLAEAGYHVKLIHRGAMFLGLDEELSNMIK 79

Query: 76  TQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGV 117
             L ++GV+      + + + +  +L +   +   + + + G+
Sbjct: 80  DMLEETGVKFFLNSELLEANEEG-VLTNSGFIEGKVKICAIGI 121

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 17/104 (16%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHY 73
             ++VGGG  G+E +               +     +HV+L+E     +  +    L  +
Sbjct: 32  RLLIVGGGVIGLELA--------------ATARTAGVHVSLVETQPRLMSRAAPATLADF 77

Query: 74  ATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTG 116
                +  GV L     V       ++L+DGT +   ++V   G
Sbjct: 78  VARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 75
             + VGGG   +EF+G  + +  R  +   ++  D I               ++LR    
Sbjct: 20  RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQ--LTEQLRANGI 77

Query: 76  TQLSKSGVRLVRGIVKDVDSQK-LILNDGTEVPYGLLVWSTG 116
              +         + K+ D  + ++   G E  Y +++ + G
Sbjct: 78  NVRTHEN---PAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 36/213 (16%), Positives = 66/213 (30%), Gaps = 58/213 (27%)

Query: 18  VVVGGGPTGVEFSGELSD----------------------------------FIMRDVRQ 43
           +VVG GP G   +   +                                   +      +
Sbjct: 7   LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66

Query: 44  RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG---IVKDVDSQKLIL 100
                 + + +   +  E  +S   +L       L  + V +V+G    V     + +  
Sbjct: 67  EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126

Query: 101 NDGTEVPYGLLVWSTGVGPSTLV-----------KSLDLPKSPGGRIGIDEWLRVPSVQD 149
           +      +   + +TG  P  LV           + + +  +  G I +D+  R  SV +
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPN 185

Query: 150 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           +FA+GD             PALA  A  +GK  
Sbjct: 186 IFAIGDIVPG---------PALAHKASYEGKVA 209

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 10/50 (20%)

Query: 132 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 181
            G  + +D   R      ++A GDC+G L          LA VA  QG+ 
Sbjct: 180 RGNYLTVDRVSRT-LATGIYAAGDCTGLLP---------LASVAAMQGRI 219

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 24/194 (12%), Positives = 55/194 (28%), Gaps = 29/194 (14%)

Query: 18  VVVGGGPTGVEFSGELSD--------FIMRDVRQRYSHVK-----------------DYI 52
           +++GGG      +  +           +  D    Y                      + 
Sbjct: 8   LLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFK 67

Query: 53  HVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG---IVKDVDSQKLILNDGTEVPYG 109
                E +         +       +   GV ++ G   +  DV    + LNDG+++ Y 
Sbjct: 68  QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYE 127

Query: 110 LLVWSTG-VGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL 168
             + +TG   P+  +      +      G      + +  +++  GD + + +       
Sbjct: 128 KCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRR 187

Query: 169 PALAQVAERQGKYL 182
                 A   G+  
Sbjct: 188 VEHHDHAVVSGRLA 201

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           G + ++E+L+  SV +V+AVGD  G          P     A + G Y 
Sbjct: 211 GEVLVNEYLQT-SVPNVYAVGDLIGG---------PMEMFKARKSGCYA 249

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 19/107 (17%)

Query: 16  HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 75
              VVG G  GVE  G + + +                      +  L SFD  +     
Sbjct: 23  RVAVVGAGYIGVELGGVI-NGLGAKTHLFEMF------------DAPLPSFDPMISETLV 69

Query: 76  TQLSKSGVRL-----VRGIVKDVDSQ-KLILNDGTEVPYGLLVWSTG 116
             ++  G +L      + +VK+ D    L L DG       L+W+ G
Sbjct: 70  EVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           G I +D+ +R  +V  ++A+GD  G          P LA  A  +G   
Sbjct: 179 GFIEVDKQMRT-NVPHIYAIGDIVGQ---------PMLAHKAVHEGHVA 217

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 68  DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 127
           + +R +A           V G         +        P+  +  +  +     +  L 
Sbjct: 107 EIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLS----LNKLG 162

Query: 128 LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182
           +     G I +DE+    +V+ ++AVGD  G            L  VA   G+ L
Sbjct: 163 IQTDDKGHIIVDEFQNT-NVKGIYAVGDVCGK---------ALLTPVAIAAGRKL 207

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 115 TGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPAL 171
            G  P T    +  + +     GRI ++E     +V  V+A+GD             P L
Sbjct: 149 KGRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIP---------GPML 198

Query: 172 AQVAERQGKYL 182
           A  AE  G   
Sbjct: 199 AHKAEEDGVAC 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.92
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.92
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.92
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.91
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.87
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.87
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.8
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.8
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.8
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.8
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.79
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.77
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.77
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.76
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.76
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.76
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.74
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.73
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.73
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.72
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.72
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.72
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.72
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.71
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.71
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.7
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.68
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.66
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.65
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.65
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.64
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.63
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.63
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.63
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.62
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.62
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.58
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.57
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.48
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.41
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.34
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.29
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.22
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.18
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.17
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.09
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.07
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.04
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.04
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.03
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.93
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.89
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.84
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.83
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.83
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.79
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.7
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.68
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.6
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.59
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.56
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.56
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.55
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.52
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.52
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.5
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.43
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.4
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.36
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.34
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.3
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.28
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.24
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.19
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.12
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.94
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.88
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.86
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.74
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.59
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.54
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.49
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.47
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.46
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.44
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.16
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.02
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.99
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.76
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.63
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.35
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.24
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.23
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	96.19
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.15
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.09
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.96
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.86
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.8
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.62
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.47
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	95.43
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.42
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.39
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.22
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.22
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	94.91
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	94.56
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	94.28
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.13
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.97
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.94
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.76
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.61
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.25
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.07
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.64
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.41
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.04
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	91.95
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.88
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.8
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.68
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.39
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.38
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.89
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.69
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.64
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.62
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.07
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.9
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	89.79
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.7
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.25
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	88.98
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	88.19
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.1
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.09
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	87.9
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	87.83
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	87.73
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	87.71
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	87.68
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	87.38
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	87.36
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	87.3
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	87.09
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	86.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	86.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	86.85
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	86.61
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	86.59
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	86.45
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	86.19
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.01
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	85.54
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	85.52
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.8
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	84.02
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	83.58
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	83.56
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.48
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	82.96
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.67
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	82.63
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	82.39
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	82.12
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.08
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	81.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	81.7
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	81.62
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	81.34
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	80.91
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	80.47

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.92  E-value=1e-24  Score=172.93  Aligned_cols=149  Identities=30%  Similarity=0.488  Sum_probs=121.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHH-------------HHHHHHHHHhCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL-------------RHYATTQLSKSG   82 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~-------------~~~~~~~l~~~g   82 (283)
                      ||+|||||++|+|+|.+|++ +              .+|+++++.......++.+             .....+.+++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~--------------~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-T--------------YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRG   66 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T--------------SEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHT
T ss_pred             eEEEECCcHHHHHHHHHHHc-C--------------CCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhcc
Confidence            79999999999999999965 3              7999999863322222222             222345677889


Q ss_pred             CEEEeC-ceEEEeCC-eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375           83 VRLVRG-IVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL  160 (283)
Q Consensus        83 V~v~~~-~V~~v~~~-~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~  160 (283)
                      ++++++ .+++++.+ .+.+.+++++++|.++||+|..|+++....+++.+.  .+.||+++|+ +.|+|||+|||+..+
T Consensus        67 v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~~--~i~v~~~~~t-~~~~i~aiGD~~~~~  143 (167)
T d1xhca1          67 IEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGR--GILIDDNFRT-SAKDVYAIGDCAEYS  143 (167)
T ss_dssp             EEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECCHHHHHTTCCBSS--SEECCTTSBC-SSTTEEECGGGEEBT
T ss_pred             ceeeeeccccccccccccccccccccccceeEEEEEecCCchhhhcCceeCC--ceeeccccEe-cCCCeEEeeecccCC
Confidence            999999 89999765 577788889999999999999988888888887653  5999999999 899999999999753


Q ss_pred             cCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          161 ESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                           .+.+..++.|++||+++|+||.
T Consensus       144 -----~~~~~~~~~a~~~a~~~a~~i~  165 (167)
T d1xhca1         144 -----GIIAGTAKAAMEQARVLADILK  165 (167)
T ss_dssp             -----TBCCCSHHHHHHHHHHHHHHHT
T ss_pred             -----CeEEChHHHHHHHHHHHHHHcC
Confidence                 3567889999999999999984

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-25  Score=186.19  Aligned_cols=160  Identities=17%  Similarity=0.236  Sum_probs=126.6

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHH-----------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL-----------------------   70 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~-----------------------   70 (283)
                      ..++||||||++|+|+|..|.+.+.            ..+|++|++....|...+.+                       
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~------------~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~   71 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDP------------GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNG   71 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHST------------TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCC------------CCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhccc
Confidence            3579999999999999999987653            27899998753333211111                       


Q ss_pred             --------------HHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc--hhhhccCCCCC
Q 023375           71 --------------RHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS--TLVKSLDLPKS  131 (283)
Q Consensus        71 --------------~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~--~~~~~~~l~~~  131 (283)
                                    .......+++.||+++++ +|++|+.+  .|+++||++++||.+|||+|..|+  ++....+++++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~  151 (213)
T d1m6ia1          72 KERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEID  151 (213)
T ss_dssp             CEEESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBC
T ss_pred             chhhhhcCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhh
Confidence                          111123356789999999 89999754  799999999999999999998766  35566677764


Q ss_pred             -CCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          132 -PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       132 -~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                       ..|.+.||++||+ + |+|||+|||+.++++..+...++.++.|.+||+.+|+||.
T Consensus       152 ~~~~~i~vd~~l~~-~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~  206 (213)
T d1m6ia1         152 SDFGGFRVNAELQA-R-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMT  206 (213)
T ss_dssp             TTTCSEECCTTCEE-E-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhHhcCc-C-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhc
Confidence             4578999999998 4 9999999999988776656788999999999999999986

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.92  E-value=3.4e-25  Score=178.54  Aligned_cols=158  Identities=25%  Similarity=0.299  Sum_probs=118.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHH----------HHHHhCCCE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT----------TQLSKSGVR   84 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~----------~~l~~~gV~   84 (283)
                      .+|+|||||++|+|+|..|++.+.+            .+|+++......+...+.+...+.          ..+...+|+
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~------------v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~   71 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQ------------GLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVE   71 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCC------------SCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCc------------eEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeE
Confidence            4699999999999999999987621            556666554333322222222221          123456899


Q ss_pred             EEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCch------hhhccCCCCCCCCccccCCCcccCCCCCEEEecc
Q 023375           85 LVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD  155 (283)
Q Consensus        85 v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~~------~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD  155 (283)
                      ++++ ++++++.+  .+++++|+++++|.+|||+|..|+.      +....+++.  ++.|.||+++|+ +.|+|||+||
T Consensus        72 ~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~t-s~~~IyA~GD  148 (183)
T d1d7ya1          72 WLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGRT-TCPDVYALGD  148 (183)
T ss_dssp             EEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCBC-SSTTEEECGG
T ss_pred             EEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEeccceec-cccccchhhh
Confidence            9999 89999766  7888999999999999999999874      233344543  457999999998 8999999999


Q ss_pred             ccccCcCCCCcC-CCcchHHHHHHHHHHHHHHH
Q 023375          156 CSGYLESTGKTV-LPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       156 ~a~~~~~~~~~~-~p~~~~~A~~qg~~~a~~i~  187 (283)
                      |+..+++.++.+ ..++++.|.+||+++|+||.
T Consensus       149 ~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil  181 (183)
T d1d7ya1         149 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLV  181 (183)
T ss_dssp             GEEEECTTTCSEEECCCHHHHHHHHHHHHHHHH
T ss_pred             hhccceeeCCceechhHHHHHHHHHHHHHHHHc
Confidence            998876644322 34689999999999999986

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.91  E-value=2.8e-24  Score=175.23  Aligned_cols=160  Identities=25%  Similarity=0.353  Sum_probs=121.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCH--------------HHHHHHHHHHHh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD--------------RLRHYATTQLSK   80 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~--------------~~~~~~~~~l~~   80 (283)
                      .||+|||||++|+|+|.+|+++.+            +.+|++++++...+..+.              .+.....+.|++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~------------~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~   68 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHP------------DAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMES   68 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT------------TSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCC------------CCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHH
Confidence            479999999999999999998753            289999998743322222              222233567889


Q ss_pred             CCCEEEeC-ceEEEeCC--eEEE---cCCc--EEEeeEEEEcCCCCCch--------hhhccCCCCCCCCccccCCCccc
Q 023375           81 SGVRLVRG-IVKDVDSQ--KLIL---NDGT--EVPYGLLVWSTGVGPST--------LVKSLDLPKSPGGRIGIDEWLRV  144 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~--~v~~---~~g~--~i~~d~vi~a~G~~~~~--------~~~~~~l~~~~~g~i~Vd~~l~~  144 (283)
                      +||+++++ +|++++.+  .|++   .+|+  ++++|.+|+++|..|+.        .....+++++++|++.||+++|+
T Consensus        69 ~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T  148 (198)
T d1nhpa1          69 RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRT  148 (198)
T ss_dssp             TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBC
T ss_pred             CCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccc
Confidence            99999999 89999865  5554   3443  57899999999987642        11222566788999999999999


Q ss_pred             CCCCCEEEeccccccCcC-CCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          145 PSVQDVFAVGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       145 ~~~~~VfaiGD~a~~~~~-~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                       +.|+|||+|||+.++.. .+.....+.++.|.+||+++|+||.
T Consensus       149 -~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~  191 (198)
T d1nhpa1         149 -SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE  191 (198)
T ss_dssp             -SSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             -cccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhC
Confidence             89999999999987543 2223346689999999999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.87  E-value=2e-21  Score=154.88  Aligned_cols=159  Identities=22%  Similarity=0.254  Sum_probs=117.2

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHH----------HHHHHHHHHhCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRL----------RHYATTQLSKSG   82 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~----------~~~~~~~l~~~g   82 (283)
                      .+||||||||++|+|+|.+|.+.+.            +.+|+++++. .++.......          .......+.+.+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~------------~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADP------------SIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHG   69 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT------------TSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCC------------CCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccc
Confidence            5799999999999999999988763            2899999987 4333221111          111123455678


Q ss_pred             CEEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCch-hhhc--------cCCCCCCCCccccC-CCcccCCCCCE
Q 023375           83 VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST-LVKS--------LDLPKSPGGRIGID-EWLRVPSVQDV  150 (283)
Q Consensus        83 V~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~--------~~l~~~~~g~i~Vd-~~l~~~~~~~V  150 (283)
                      +++..+.+..++..  .+.+.++++++||.+|||+|.+|+. .+..        .++..+. +++.++ +.++..+.++|
T Consensus        70 v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i  148 (186)
T d1fcda1          70 IQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDA-GWCPVDIKTFESSIHKGI  148 (186)
T ss_dssp             EEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTT-SSEEBCSSSCBBSSSTTE
T ss_pred             eeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCccccc-ccccceeeeeecccccCc
Confidence            88887765555443  6778899999999999999998873 2222        2343444 444444 56777799999


Q ss_pred             EEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          151 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       151 faiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      |++||++..      .+.|++++.|.+||+.+|+||.+.++
T Consensus       149 ~~iGd~~~~------~~~p~~~~~A~~q~~~~A~ni~~~~~  183 (186)
T d1fcda1         149 HVIGDASIA------NPMPKSGYSANSQGKVAAAAVVVLLK  183 (186)
T ss_dssp             EECTTSEEC------TTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEecccccc------CCCCchHhHHHHHHHHHHHHHHHHhc
Confidence            999999863      45789999999999999999999887

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=5.3e-22  Score=159.23  Aligned_cols=159  Identities=24%  Similarity=0.321  Sum_probs=117.0

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCC--------------CHHHHHHHHHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF--------------DDRLRHYATTQLS   79 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~--------------~~~~~~~~~~~l~   79 (283)
                      ..+|||||||++|+|+|.+|++++.+            ..|+++......+..              .............
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~------------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWE------------GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYA   70 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCC------------SEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCc------------eEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhc
Confidence            46899999999999999999988721            445555443222211              1112222234456


Q ss_pred             hCCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc----hhhhccCCCCCCCCccccCCCcccCCCCCEEE
Q 023375           80 KSGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS----TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA  152 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~----~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~Vfa  152 (283)
                      ..++.+..+ .+..++.+  .+...+++++++|.++|++|.+|+    .+.+..+++.  +|.+.||+++|+ +.|+||+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~t-s~~~vya  147 (185)
T d1q1ra1          71 AQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQT-SDPLIMA  147 (185)
T ss_dssp             HTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBC-SSTTEEE
T ss_pred             ccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCcccc-chhhhhc
Confidence            677888877 67777665  688889999999999999998875    2445556543  567999999999 8999999


Q ss_pred             eccccccCcCCCC-cCCCcchHHHHHHHHHHHHHHH
Q 023375          153 VGDCSGYLESTGK-TVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       153 iGD~a~~~~~~~~-~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      +|||+..++..++ ...+++++.|.+||+.+|+||.
T Consensus       148 ~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~  183 (185)
T d1q1ra1         148 VGDCARFHSQLYDRWVRIESVPNALEQARKIAAILC  183 (185)
T ss_dssp             CGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             chhhhccccccCCcccchhhHHHHHHHHHHHHHHcc
Confidence            9999988765333 2346789999999999999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.80  E-value=2.1e-19  Score=152.27  Aligned_cols=150  Identities=23%  Similarity=0.299  Sum_probs=110.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC---------------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------------------------   64 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~---------------------------   64 (283)
                      +.-.++|||||++|+++|..+++++              .+|++|+.. .+..                           
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G--------------~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~  106 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMG--------------GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFS  106 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhh
Confidence            4457999999999999999999988              899999986 3311                           


Q ss_pred             ------C-----CCH-HHHH------------HHHHHHHhCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           65 ------S-----FDD-RLRH------------YATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        65 ------~-----~~~-~~~~------------~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                            .     ... ....            ...+.+...++....+ ..+-++...+. .+|+++++|.+++|+|.+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~-~~g~~i~ad~viiAtG~~P  185 (261)
T d1mo9a1         107 GQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVE-AAGKVFKAKNLILAVGAGP  185 (261)
T ss_dssp             TSTTCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEE-ETTEEEEBSCEEECCCEEC
T ss_pred             hhccccccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeecccc-cccceEeeeeeeeccCCCC
Confidence                  0     000 0100            0112233444444433 44444555554 3678999999999999999


Q ss_pred             ch-----------hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          120 ST-----------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       120 ~~-----------~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      +.           +.+.++++++++|+|.||+++|| +.|+|||+|||+.         -|.+++.|..||++||.||.
T Consensus       186 ~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~T-s~~~IyA~GDv~~---------~~~l~~~A~~~G~~aa~~i~  254 (261)
T d1mo9a1         186 GTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIG---------GPMEMFKARKSGCYAARNVM  254 (261)
T ss_dssp             CCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGC---------SSCSHHHHHHHHHHHHHHHT
T ss_pred             CcCcccccccccccccceeeeeccCCEEEeCCCccc-CCCCEEEEEEeCC---------CcccHHHHHHHHHHHHHHHC
Confidence            72           22345899999999999999999 9999999999984         27889999999999999985

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.80  E-value=4.9e-19  Score=132.48  Aligned_cols=91  Identities=24%  Similarity=0.394  Sum_probs=85.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      +..++++|||||++|+|+|.+|++++              .+|++++++ ++|+ .+++++++.+.+.|+++||+++++ 
T Consensus        28 ~~~~~vvIIGgG~iG~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~   93 (121)
T d1d7ya2          28 RPQSRLLIVGGGVIGLELAATARTAG--------------VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER   93 (121)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESC
T ss_pred             hcCCeEEEECcchhHHHHHHHhhccc--------------ceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCC
Confidence            34689999999999999999999887              999999998 7887 679999999999999999999999 


Q ss_pred             ceEEEeCCeEEEcCCcEEEeeEEEEcCC
Q 023375           89 IVKDVDSQKLILNDGTEVPYGLLVWSTG  116 (283)
Q Consensus        89 ~V~~v~~~~v~~~~g~~i~~d~vi~a~G  116 (283)
                      +|+++..+.++++||+++++|+||+|+|
T Consensus        94 ~v~~~~~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          94 SVTGSVDGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             CEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred             EEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence            8999999999999999999999999998

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=1.1e-18  Score=145.27  Aligned_cols=152  Identities=27%  Similarity=0.401  Sum_probs=111.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------------------------CCC-
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------------------------SSF-   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------------------------~~~-   66 (283)
                      .+|+||||||+|+++|..+++++.+           ..+|+++|+..+-                           +.+ 
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~-----------~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G   70 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPE-----------TTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLG   70 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTT-----------TEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCC-----------CCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcC
Confidence            3799999999999999998877632           3789999875421                           000 


Q ss_pred             ----------C------------HHHHHHHHHHHHhCCCEEEeCceEEEeC------Ce--EEEcCCc--EEEeeEEEEc
Q 023375           67 ----------D------------DRLRHYATTQLSKSGVRLVRGIVKDVDS------QK--LILNDGT--EVPYGLLVWS  114 (283)
Q Consensus        67 ----------~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~------~~--v~~~~g~--~i~~d~vi~a  114 (283)
                                +            ......+...++..||+++.++-.-+..      ..  ++..+|+  ++++|.+|++
T Consensus        71 ~~i~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiA  150 (233)
T d1xdia1          71 FHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVA  150 (233)
T ss_dssp             BC------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEEC
T ss_pred             CcccccCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeee
Confidence                      0            0112234556788899999873222222      12  3344553  6899999999


Q ss_pred             CCCCCchh------------hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHH
Q 023375          115 TGVGPSTL------------VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL  182 (283)
Q Consensus       115 ~G~~~~~~------------~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~  182 (283)
                      +|..|...            ++..+++++++|+|.||+++|| +.|+|||+|||+.         .+++++.|..||+++
T Consensus       151 tG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-~~~gIyA~GDv~~---------~~~l~~~A~~~g~~a  220 (233)
T d1xdia1         151 TGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTG---------LLPLASVAAMQGRIA  220 (233)
T ss_dssp             CCEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBC-SSTTEEECSGGGT---------SCSCHHHHHHHHHHH
T ss_pred             cCcccccccccccccccccccchhhhcccCCCcCCcCCCccc-CCCCEEEEEEeCC---------CchhHHHHHHHHHHH
Confidence            99988631            2344667888999999999999 9999999999984         267889999999999


Q ss_pred             HHHHH
Q 023375          183 FSLLN  187 (283)
Q Consensus       183 a~~i~  187 (283)
                      |.|+.
T Consensus       221 a~~~~  225 (233)
T d1xdia1         221 MYHAL  225 (233)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99985

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.80  E-value=9.4e-19  Score=143.95  Aligned_cols=149  Identities=26%  Similarity=0.350  Sum_probs=114.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC----------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS----------------------------   65 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~----------------------------   65 (283)
                      -.|+||||||+|+++|..+++++              .+|++||+. .+...                            
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G--------------~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   69 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLG--------------FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFAN   69 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhh
Confidence            47999999999999999999988              899999986 33110                            


Q ss_pred             ---------CC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE----cCCcEEEeeEEEEcCCCC--
Q 023375           66 ---------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL----NDGTEVPYGLLVWSTGVG--  118 (283)
Q Consensus        66 ---------~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~----~~g~~i~~d~vi~a~G~~--  118 (283)
                               ..            ..+.+.....+...+|+++.....-..+.....    .+..++.+|.||+|||.+  
T Consensus        70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~  149 (221)
T d1dxla1          70 HGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK  149 (221)
T ss_dssp             HTEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred             cCeecccceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCcc
Confidence                     00            112334445567778998877544455544332    234678999999999964  


Q ss_pred             ---Cch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          119 ---PST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       119 ---~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                         |+.   .+++++++++++|+|.||+++|| +.|+|||+|||..         -|.+++.|+.+|+.+|++|.
T Consensus       150 gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T-~v~gi~A~GDv~~---------g~~l~~~A~~~g~~aa~~i~  214 (221)
T d1dxla1         150 GRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIP---------GPMLAHKAEEDGVACVEYLA  214 (221)
T ss_dssp             CEEECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSS---------SCCCHHHHHHHHHHHHHHHT
T ss_pred             CccccCCCCChHhcCceEcCCCcEEeCCCccc-CCCCEEEEeccCC---------CcccHHHHHHHHHHHHHHHc
Confidence               442   24667889999999999999999 9999999999984         17789999999999999884

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.79  E-value=1.7e-18  Score=142.33  Aligned_cols=149  Identities=26%  Similarity=0.355  Sum_probs=111.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC-------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------------------------------   63 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l-------------------------------   63 (283)
                      ..|+||||||+|+++|..+++.+              .+|++||+..+.                               
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G--------------~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLG--------------QKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMG   69 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--------------CEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhc
Confidence            36999999999999999999987              899999876431                               


Q ss_pred             -----CCCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCe--EEEc-CCcEEEeeEEEEcC--------
Q 023375           64 -----SSFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQK--LILN-DGTEVPYGLLVWST--------  115 (283)
Q Consensus        64 -----~~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~--v~~~-~g~~i~~d~vi~a~--------  115 (283)
                           ..+.            ..+....+..+...+|+++.++..-.....  +... ++.++.++.+|+++        
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~  149 (223)
T d1ebda1          70 IKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELV  149 (223)
T ss_dssp             EECCSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBS
T ss_pred             ccchhheeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccc
Confidence                 0011            122333445567789999887433233332  3333 34578999999986        


Q ss_pred             CCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          116 GVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       116 G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      |.+|+.   .+++++++++++|+|.||+++|| +.|+|||+|||+.         -|.+++.|..||+.+|++|.
T Consensus       150 G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~---------~~~~~~~A~~~g~~aa~~i~  214 (223)
T d1ebda1         150 GRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVP---------GPALAHKASYEGKVAAEAIA  214 (223)
T ss_dssp             CEEESCSSSSTTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSS---------SCCCHHHHHHHHHHHHHHHT
T ss_pred             cceecCCCCChHhcCceECCCCCEeECCCCCC-CCCCEEEEeccCC---------CcccHHHHHHHHHHHHHHHc
Confidence            555652   15677888999999999999999 9999999999984         16788999999999999985

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.5e-18  Score=138.93  Aligned_cols=149  Identities=25%  Similarity=0.378  Sum_probs=112.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC--------------------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------------------------------   63 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l--------------------------------   63 (283)
                      .++||||||+|+++|..+++.+              .+|++||...+.                                
T Consensus         5 DviIIG~GpaG~~aA~~aar~G--------------~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~   70 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELG--------------ARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF   70 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccc
Confidence            5899999999999999999988              899999875320                                


Q ss_pred             ----CCCCH------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEE-EcCCcEEEeeEEEEcCCCCCc-h----
Q 023375           64 ----SSFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPS-T----  121 (283)
Q Consensus        64 ----~~~~~------------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~-~~~g~~i~~d~vi~a~G~~~~-~----  121 (283)
                          +.++.            .+.......++..||+++.+.-.....+.++ .....++.++.+++++|..|. +    
T Consensus        71 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~  150 (221)
T d3grsa1          71 PSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERV  150 (221)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEE
T ss_pred             cccccchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccc
Confidence                01111            1223344557889999998742222232222 234467889999999997665 1    


Q ss_pred             ------hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          122 ------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       122 ------~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                            -+++.+++++++|+|.||+++|| +.|+|||+|||+.         -+.+.+.|..+|+.+|++|..
T Consensus       151 p~~~~l~L~~~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~---------~~~l~~~A~~~G~~aa~~~~~  213 (221)
T d3grsa1         151 PNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG---------KALLTPVAIAAGRKLAHRLFE  213 (221)
T ss_dssp             ESCTTTTGGGTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGT---------SSCCHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCcCchhcCcEECCCccEEeCCCccc-cCCcEEEEEEccC---------CcCcHHHHHHHHHHHHHHHcC
Confidence                  14566788899999999999999 9999999999984         167889999999999998864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.3e-18  Score=127.86  Aligned_cols=91  Identities=29%  Similarity=0.402  Sum_probs=83.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +-+++++|||||++|+|+|..|++++              .+||++++. +++|.+++++++++.+.|+++||+++++ +
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~~G--------------~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~   84 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVINGLG--------------AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAI   84 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCC
T ss_pred             hCCCEEEEECCChhhHHHHHHhhccc--------------cEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCE
Confidence            45589999999999999999999988              999999998 8999999999999999999999999999 8


Q ss_pred             eEEEeCC-----eEEEcCCcEEEeeEEEEcCC
Q 023375           90 VKDVDSQ-----KLILNDGTEVPYGLLVWSTG  116 (283)
Q Consensus        90 V~~v~~~-----~v~~~~g~~i~~d~vi~a~G  116 (283)
                      |+++..+     .+.+++|+++++|.||||+|
T Consensus        85 v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          85 PKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            9988653     47788999999999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=8.4e-18  Score=135.76  Aligned_cols=155  Identities=17%  Similarity=0.125  Sum_probs=121.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C----------------CC-----CCCHHHH
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I----------------LS-----SFDDRLR   71 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~----------------l~-----~~~~~~~   71 (283)
                      .++|+||||||+|+++|..+++.+              .++++++... .                .+     ..++++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~   70 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAE--------------LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELT   70 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEeecccccccccccccchhhhccccccccccchHHH
Confidence            478999999999999999999887              8889988531 1                01     1246788


Q ss_pred             HHHHHHHHhCCCEEEeCceEEEeCC--e-EEEcCCcEEEeeEEEEcCCCC-----CchhhhccCCCCCCCCccccCC-Cc
Q 023375           72 HYATTQLSKSGVRLVRGIVKDVDSQ--K-LILNDGTEVPYGLLVWSTGVG-----PSTLVKSLDLPKSPGGRIGIDE-WL  142 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~~V~~v~~~--~-v~~~~g~~i~~d~vi~a~G~~-----~~~~~~~~~l~~~~~g~i~Vd~-~l  142 (283)
                      ..+++++++.|+++..+.|.+++..  . ....+..+..+|.+++++|..     |+..+..-+++++++|+|.+|+ ++
T Consensus        71 ~~~~~q~~~~g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~  150 (192)
T d1vdca1          71 DKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTT  150 (192)
T ss_dssp             HHHHHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSC
T ss_pred             HHHHHHHHhhcceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCce
Confidence            8888888999999988777777644  2 333456688999999999964     4433333478889999999995 67


Q ss_pred             ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +| +.|+||++|||...        ..+++..|..+|..+|.++.+++.
T Consensus       151 ~T-s~~GV~a~GDv~~~--------~~r~~v~A~g~G~~aA~~~~~yl~  190 (192)
T d1vdca1         151 QT-SVPGVFAAGDVQDK--------KYRQAITAAGTGCMAALDAEHYLQ  190 (192)
T ss_dssp             BC-SSTTEEECGGGGCS--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ee-cCCCEEEeeecCCc--------ccceEEEEEechHHHHHHHHHHHh
Confidence            77 99999999999852        245688899999999999988775

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.6e-17  Score=137.86  Aligned_cols=149  Identities=20%  Similarity=0.273  Sum_probs=111.3

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC-----CC------------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----SF------------------------   66 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~-----~~------------------------   66 (283)
                      .|+||||||+|+++|..+++.+              .+|.+||.....+     .+                        
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G--------------~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~   70 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFD--------------KKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQA   70 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGC--------------CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhH
Confidence            6899999999999999999988              8999999642100     00                        


Q ss_pred             -----------------C------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCCc--EEEeeEEEE
Q 023375           67 -----------------D------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVW  113 (283)
Q Consensus        67 -----------------~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~d~vi~  113 (283)
                                       +            ..+..-....|++.+|+++.+...-..++.+..  .+++  .+.++.+++
T Consensus        71 ~~~~~~~gi~~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi  150 (235)
T d1h6va1          71 LKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLI  150 (235)
T ss_dssp             HHHTTTTTBCCCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEE
T ss_pred             hhhhhccccccccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceeccccccccccccccccee
Confidence                             0            012223445667789999988544455554333  3443  588999999


Q ss_pred             cCCCCCch-----------hhhccCCCCCC-CCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHH
Q 023375          114 STGVGPST-----------LVKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY  181 (283)
Q Consensus       114 a~G~~~~~-----------~~~~~~l~~~~-~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~  181 (283)
                      ++|.+|..           .+...+++++. .|+|.||+++|| +.|+|||+|||+.        ..+.+++.|+.+|++
T Consensus       151 ~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~T-svpgIyA~GDv~~--------g~~~l~~~A~~eG~~  221 (235)
T d1h6va1         151 ATGERPRYLGIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQT-NVPYIYAIGDILE--------GKLELTPVAIQAGRL  221 (235)
T ss_dssp             CCCEEECCCSSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBC-SSTTEEECGGGBT--------TSCCCHHHHHHHHHH
T ss_pred             ecCCCceeEEEeeccceeeccccceeeeccccCccccCCcccc-CCCCEEEEEeccC--------CCcccHHHHHHHHHH
Confidence            99998863           12344566765 589999999999 9999999999985        237788999999999


Q ss_pred             HHHHHH
Q 023375          182 LFSLLN  187 (283)
Q Consensus       182 ~a~~i~  187 (283)
                      +|++|.
T Consensus       222 aa~~~~  227 (235)
T d1h6va1         222 LAQRLY  227 (235)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999985

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.76  E-value=4.5e-18  Score=126.52  Aligned_cols=95  Identities=25%  Similarity=0.411  Sum_probs=84.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.+++++|||||++|+|+|..++++..           .+.+|++++++ +++|.+++++++++++.|+++||+++++ +
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~-----------~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~   84 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKA-----------RGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHEN   84 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSC-----------TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCC
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcc-----------cccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCE
Confidence            456899999999999999998887641           23899999997 8999999999999999999999999999 8


Q ss_pred             eEEEeCC-----eEEEcCCcEEEeeEEEEcCCC
Q 023375           90 VKDVDSQ-----KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        90 V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      |++|+.+     .+++++|++++||.||||+|.
T Consensus        85 v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          85 PAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             EEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence            9999643     478899999999999999983

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.74  E-value=1.9e-17  Score=123.03  Aligned_cols=93  Identities=26%  Similarity=0.409  Sum_probs=82.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.+++++|||||++|+|+|..+..++.           .+.+|+++++. ++||.+++++++.+.+.|+++||+++++ +
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~-----------~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~   86 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKP-----------KDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKEN   86 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCC-----------TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCC
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhccc-----------CCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCE
Confidence            345899999999999999999988763           23789999997 8999999999999999999999999999 8


Q ss_pred             eEEEeCC-----eEEEcCCcEEEeeEEEEcC
Q 023375           90 VKDVDSQ-----KLILNDGTEVPYGLLVWST  115 (283)
Q Consensus        90 V~~v~~~-----~v~~~~g~~i~~d~vi~a~  115 (283)
                      |++++.+     .+++++|++++||.||||.
T Consensus        87 v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          87 PAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            9999632     4888999999999999984

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.73  E-value=1.1e-17  Score=125.38  Aligned_cols=90  Identities=20%  Similarity=0.414  Sum_probs=81.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +..++++|||||++|+|+|..|++++              .+|++++++ .+++ +++++++.+.+.|+++||+++++ +
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g--------------~~Vtlv~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~   94 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAG--------------YHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSE   94 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTT--------------CEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCC
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhccc--------------ceEEEEeccccccC-CCHHHHHHHHHHHHHCCcEEEeCCE
Confidence            35589999999999999999999987              999999998 5554 99999999999999999999999 8


Q ss_pred             eEEEeCCeEEEcCCcEEEeeEEEEcCCC
Q 023375           90 VKDVDSQKLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        90 V~~v~~~~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      +++++++++. .+++++++|+||||+|.
T Consensus        95 v~~~~~~~v~-~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          95 LLEANEEGVL-TNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             EEEECSSEEE-ETTEEEECSCEEEECCE
T ss_pred             EEEEeCCEEE-eCCCEEECCEEEEEEEe
Confidence            9999988874 57788999999999995

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.73  E-value=3.2e-17  Score=135.81  Aligned_cols=149  Identities=22%  Similarity=0.318  Sum_probs=105.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------------------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------   64 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------------------------------   64 (283)
                      -.|+||||||+|+++|..+++.+              .+|+|||+.+.+.                              
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G--------------~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~   72 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEG--------------LKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAAN   72 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             cCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhc
Confidence            46999999999999999999988              8999999863221                              


Q ss_pred             -------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCe--------------EEEcCCcEEEeeEE
Q 023375           65 -------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQK--------------LILNDGTEVPYGLL  111 (283)
Q Consensus        65 -------~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~--------------v~~~~g~~i~~d~v  111 (283)
                             .+.            ..+..-........+++++.++-....+..              ......+...++.+
T Consensus        73 G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (229)
T d1ojta1          73 GIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNC  152 (229)
T ss_dssp             TCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             CCcccCCcccHHHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccccccccccceecceE
Confidence                   011            011222333455677887765322222211              11111235667777


Q ss_pred             EEcCCCCC-c---hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          112 VWSTGVGP-S---TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       112 i~a~G~~~-~---~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      +++.|.++ .   ..++.++++++++|+|.||+++|| +.|+|||+|||+.         .|.+++.|+.||++||.||.
T Consensus       153 ~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~T-svpgVyAaGDv~~---------~~~l~~~A~~eG~~Aa~~i~  222 (229)
T d1ojta1         153 IIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVG---------QPMLAHKAVHEGHVAAENCA  222 (229)
T ss_dssp             EECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTC---------SSCCHHHHHHHHHHHHHHHT
T ss_pred             EEEecccCCcccccchhhhCccCCCCCCEEcCCCccC-CCCCEEEEEecCC---------CcchHHHHHHHHHHHHHHHc
Confidence            77777664 3   256778999999999999999999 9999999999984         26789999999999999984

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.73  E-value=4.3e-17  Score=134.07  Aligned_cols=151  Identities=21%  Similarity=0.300  Sum_probs=112.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CC--CCCC-----------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--SSFD-----------------------   67 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l--~~~~-----------------------   67 (283)
                      .-.|+||||||+|+.+|..+++.+              .+|.+||+.. ..  ..+.                       
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G--------------~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~   68 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLG--------------LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHE   68 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhh
Confidence            347999999999999999999988              8999999742 10  0010                       


Q ss_pred             ------------------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeE--EEcC--CcEEEeeEEEE
Q 023375           68 ------------------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKL--ILND--GTEVPYGLLVW  113 (283)
Q Consensus        68 ------------------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v--~~~~--g~~i~~d~vi~  113 (283)
                                                    ..+.......++..||+++.+..........  ...+  ..++.++.+++
T Consensus        69 ~~~~~~~~gi~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  148 (229)
T d3lada1          69 AHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVIL  148 (229)
T ss_dssp             HHTTSGGGTEECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEE
T ss_pred             hhhhhhhcccccCcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccc
Confidence                                          0122334455677889998874333333322  2222  24678999999


Q ss_pred             cCCCCCch----------hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHH
Q 023375          114 STGVGPST----------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF  183 (283)
Q Consensus       114 a~G~~~~~----------~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a  183 (283)
                      ++|.+|..          ++++++++++++|+|.||+++|| +.|+|||+|||..         -|.+++.|..+|+.+|
T Consensus       149 atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T-~vpgiyA~GDv~~---------g~~l~~~A~~~G~~aa  218 (229)
T d3lada1         149 ASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGDVVR---------GAMLAHKASEEGVVVA  218 (229)
T ss_dssp             CCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGGGSS---------SCCCHHHHHHHHHHHH
T ss_pred             cCCcccccccccccccccchHhcCeeecCCCcEEecccccC-CCCCEEEEeCCcc---------hHHHHHHHHHHHHHHH
Confidence            99988752          34567888999999999999999 9999999999984         1778899999999999


Q ss_pred             HHHHH
Q 023375          184 SLLNR  188 (283)
Q Consensus       184 ~~i~~  188 (283)
                      ++|..
T Consensus       219 ~~i~g  223 (229)
T d3lada1         219 ERIAG  223 (229)
T ss_dssp             HHHHH
T ss_pred             HHHcC
Confidence            98863

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=4.1e-17  Score=121.09  Aligned_cols=90  Identities=18%  Similarity=0.302  Sum_probs=81.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +++++|+|||||++|+|+|..|+.++              .+|+++++. +++|.+++++++.+.+.|+++||+++++ +
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~~g--------------~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~   85 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKRLG--------------IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFAD   85 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHTTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred             CCCCEEEEECCchHHHHHHHHHHhcc--------------ccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCE
Confidence            45789999999999999999999887              999999997 8999999999999999999999999999 8


Q ss_pred             eEEEeCC-----eEEEcCCcEE-EeeEEEEcC
Q 023375           90 VKDVDSQ-----KLILNDGTEV-PYGLLVWST  115 (283)
Q Consensus        90 V~~v~~~-----~v~~~~g~~i-~~d~vi~a~  115 (283)
                      |++++..     .+++++|+++ .+|.||||.
T Consensus        86 v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          86 VVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             EEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            9999632     3778999887 579999984

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=2.8e-17  Score=121.71  Aligned_cols=91  Identities=27%  Similarity=0.396  Sum_probs=81.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.+++++|||||++|+|+|..|++++              .+||++++. +++|.+++++++.+.+.|+++||+++++ +
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~g--------------~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~   84 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKLG--------------AQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHS   84 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhcc--------------cceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcE
Confidence            45689999999999999999999988              999999997 8999999999999999999999999999 8


Q ss_pred             eEEEeCCeEEEc--C--CcEEEeeEEEEcCC
Q 023375           90 VKDVDSQKLILN--D--GTEVPYGLLVWSTG  116 (283)
Q Consensus        90 V~~v~~~~v~~~--~--g~~i~~d~vi~a~G  116 (283)
                      |++++++.....  +  ++++++|.|+||+|
T Consensus        85 V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          85 VEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             EEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            999988765443  2  35799999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.5e-17  Score=125.00  Aligned_cols=96  Identities=20%  Similarity=0.315  Sum_probs=83.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      ++.++++|||||++|+|+|.+|++..+.          .+.+|++++++ .+++ .+++++++.+.+.|+++||+++++ 
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~----------~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~  104 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACALGRKARA----------LGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNA  104 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHHHHHHHH----------HTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSC
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHHHHHh----------cCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCC
Confidence            3568999999999999999999865421          12899999997 7776 589999999999999999999999 


Q ss_pred             ceEEEeCC----eEEEcCCcEEEeeEEEEcCCC
Q 023375           89 IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        89 ~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      .|++++.+    .+++++|+++++|+||||+|+
T Consensus       105 ~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         105 IVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             EEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            89999765    588899999999999999994

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=9.8e-17  Score=131.91  Aligned_cols=148  Identities=31%  Similarity=0.496  Sum_probs=109.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC------------------------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------------------------   63 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l------------------------------   63 (283)
                      ...++||||||+|+++|..+++++              .+|+|||++.+-                              
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~   70 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLG--------------IPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEP   70 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhcccc
Confidence            358999999999999999999998              999999865320                              


Q ss_pred             ---------CCCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCchh
Q 023375           64 ---------SSFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL  122 (283)
Q Consensus        64 ---------~~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~  122 (283)
                               +...            ..........+.+.+++++.++..-++...+. .++.++.+|.+++|+|.+|..+
T Consensus        71 ~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~-~~~~~i~a~~viiAtG~~p~~l  149 (220)
T d1lvla1          71 SPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE-VDGQRIQCEHLLLATGSSSVEL  149 (220)
T ss_dssp             CTTCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEE-ETTEEEECSEEEECCCEEECCB
T ss_pred             ccceEEeccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCccccc-ccceeEeeceeeEcCCCCcccc
Confidence                     0000            01122334556677888888754434444443 3567899999999999988743


Q ss_pred             h----------hccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          123 V----------KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       123 ~----------~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      .          ...+.++ .+|++.||+++|| +.|+|||+|||+.      +   |.+++.|..+|+.+|++|.
T Consensus       150 p~~~~~~~~~~~~~~~~~-~~g~i~vd~~~~T-~~~~I~A~GDv~~------~---~~l~~~a~~~g~~~a~~i~  213 (220)
T d1lvla1         150 PRRPRTKGFNLECLDLKM-NGAAIAIDERCQT-SMHNVWAIGDVAG------E---PMLAHRAMAQGEMVAEIIA  213 (220)
T ss_dssp             TEEECCSSSSGGGSCCCE-ETTEECCCTTCBC-SSTTEEECGGGGC------S---SCCHHHHHHHHHHHHHHHT
T ss_pred             cccccccCCcceeeehhh-cCCcccccchhhc-CCCCEEEEEEeCC------c---ccchhhhhhhHHHHHHHHc
Confidence            2          2223333 3588999999999 9999999999984      2   7799999999999999874

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=4.3e-17  Score=123.83  Aligned_cols=91  Identities=24%  Similarity=0.384  Sum_probs=82.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-   88 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-   88 (283)
                      +..++++|||||++|+|+|..|++.+              .+|+++++. ++++ .+++.+++.+++.++++||+++++ 
T Consensus        33 ~~~k~v~VIGgG~iG~E~A~~l~~~g--------------~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~   98 (133)
T d1q1ra2          33 IADNRLVVIGGGYIGLEVAATAIKAN--------------MHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGT   98 (133)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred             ccCCEEEEECCchHHHHHHHHHHhhC--------------cceeeeeecccccccccchhhhhhhhhcccccccEEEeCC
Confidence            35689999999999999999999987              999999997 7887 479999999999999999999999 


Q ss_pred             ceEEEeCC-------eEEEcCCcEEEeeEEEEcCC
Q 023375           89 IVKDVDSQ-------KLILNDGTEVPYGLLVWSTG  116 (283)
Q Consensus        89 ~V~~v~~~-------~v~~~~g~~i~~d~vi~a~G  116 (283)
                      +|++++..       .+.+++|+++++|.||+|+|
T Consensus        99 ~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          99 QVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             eEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            89988642       37789999999999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1e-16  Score=128.95  Aligned_cols=155  Identities=19%  Similarity=0.167  Sum_probs=116.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC------------CC-----CCCHHHHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LS-----SFDDRLRHYAT   75 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~------------l~-----~~~~~~~~~~~   75 (283)
                      +.++|+||||||+|+++|..+++.+              .+|++|++...            .+     ..+.++.+...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g--------------~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~   69 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH   69 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTT--------------CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--------------CceEEEEeecccccccccchhhhhhccccccchHHHHHHHH
Confidence            4578999999999999999999987              89999986421            01     12456778888


Q ss_pred             HHHHhCCCEEEeCceEEEeCCe---EEEcCCcEEEeeEEEEcCCCCCchh---hh--ccCCCCCCCCccccCC-----Cc
Q 023375           76 TQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPSTL---VK--SLDLPKSPGGRIGIDE-----WL  142 (283)
Q Consensus        76 ~~l~~~gV~v~~~~V~~v~~~~---v~~~~g~~i~~d~vi~a~G~~~~~~---~~--~~~l~~~~~g~i~Vd~-----~l  142 (283)
                      ..+.+.++++..+.|+++..+.   .......++.++.+++++|..+...   ..  .-.+++ ++|++.+|+     .+
T Consensus        70 ~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~-~~g~i~~~~~~~~~~~  148 (190)
T d1trba1          70 EHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQLEL-ENGYIKVQSGIHGNAT  148 (190)
T ss_dssp             HHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTTTSCE-ETTEECCCCSSSSCTT
T ss_pred             HHHHhcCcEEecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecceEec-CCcEEEEecCCccccc
Confidence            8899999999888888876542   2333456899999999999876421   11  112333 358899984     45


Q ss_pred             ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++ +.|+||++|||+..        ..+++..|..+|..+|.++.+++.
T Consensus       149 ~T-~v~gV~aaGDv~~~--------~~~q~i~Aag~G~~AA~~a~~yl~  188 (190)
T d1trba1         149 QT-SIPGVFAAGDVMDH--------IYRQAITSAGTGCMAALDAERYLD  188 (190)
T ss_dssp             BC-SSTTEEECGGGGCS--------SSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cc-ccCeEEEeEEecCc--------ceeEEEEEeccHHHHHHHHHHHHh
Confidence            77 89999999999852        256788899999999998887764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.70  E-value=1.2e-16  Score=118.92  Aligned_cols=91  Identities=22%  Similarity=0.365  Sum_probs=81.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.+++++|||||++|+|+|..|+.++              .+|+++++. +++|.+++++++.+.+.|++.||+++++ +
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G--------------~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~   85 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLG--------------AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGAR   85 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCE
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcC--------------CceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcE
Confidence            46689999999999999999999998              999999998 8999999999999999999999999999 8


Q ss_pred             eEEEeCC----eEEEcCC---cEEEeeEEEEcCC
Q 023375           90 VKDVDSQ----KLILNDG---TEVPYGLLVWSTG  116 (283)
Q Consensus        90 V~~v~~~----~v~~~~g---~~i~~d~vi~a~G  116 (283)
                      |++++.+    .+++.++   +++.+|.|++|+|
T Consensus        86 v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          86 VTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            9998654    3555543   5799999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.68  E-value=3.6e-16  Score=117.00  Aligned_cols=89  Identities=19%  Similarity=0.319  Sum_probs=80.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.++|+|||||++|+|+|..|++++              .+||++++. ++++ .+++++++.+.+.|+++||+++++ +
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g--------------~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~   94 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAG--------------KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGET   94 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCC
T ss_pred             CCCEEEEECChHHHHHHHHHhhccc--------------eEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCce
Confidence            4679999999999999999999987              999999997 7887 579999999999999999999999 8


Q ss_pred             eEEEeCC---eEEEcCCcEEEeeEEEEcC
Q 023375           90 VKDVDSQ---KLILNDGTEVPYGLLVWST  115 (283)
Q Consensus        90 V~~v~~~---~v~~~~g~~i~~d~vi~a~  115 (283)
                      +++++++   ...+.||++++||.||+|.
T Consensus        95 v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          95 VERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             EEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             EEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            9999876   3457899999999999974

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.66  E-value=2.9e-16  Score=117.18  Aligned_cols=90  Identities=18%  Similarity=0.302  Sum_probs=79.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      ..++++|||||++|+|+|..|+.++              .+|+++++. .++|.+++++++.+.+.|++.||+++++ ++
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g--------------~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v   86 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATG--------------RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNV   86 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcc--------------hhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEE
Confidence            4589999999999999999999887              999999998 7899999999999999999999999999 89


Q ss_pred             EEEeCC------eEE---EcCCcEEEeeEEEEcCC
Q 023375           91 KDVDSQ------KLI---LNDGTEVPYGLLVWSTG  116 (283)
Q Consensus        91 ~~v~~~------~v~---~~~g~~i~~d~vi~a~G  116 (283)
                      ++++.+      .+.   ..+++++++|.||+|+|
T Consensus        87 ~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          87 TRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             EEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            998754      122   12456899999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.1e-16  Score=115.70  Aligned_cols=90  Identities=29%  Similarity=0.427  Sum_probs=78.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      -+++++|||||++|+|+|..|++++              .+||+++++ +++|.+++++++++.+.|++.||+++++ +|
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v   86 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALG--------------SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV   86 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCC--------------cEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4589999999999999999999988              999999998 8999999999999999999999999999 89


Q ss_pred             EEEeC--CeEE--E---cCC------cEEEeeEEEEcCC
Q 023375           91 KDVDS--QKLI--L---NDG------TEVPYGLLVWSTG  116 (283)
Q Consensus        91 ~~v~~--~~v~--~---~~g------~~i~~d~vi~a~G  116 (283)
                      ++++.  +++.  +   .+|      ..+++|.|+||+|
T Consensus        87 ~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          87 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            99954  3322  1   233      2568999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.65  E-value=7e-16  Score=114.39  Aligned_cols=89  Identities=26%  Similarity=0.480  Sum_probs=77.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.+++++|||||++|+|+|..|++++              .+||++++. +++|.+++++++++.+.|+++||+++++ +
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G--------------~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~   85 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFG--------------TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNAL   85 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEE
T ss_pred             hcCCeEEEECCCccceeeeeeecccc--------------cEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCE
Confidence            45689999999999999999999998              999999998 8999999999999999999999999999 8


Q ss_pred             eEEEeCC--e--EEEc-CC--cEEEeeEEEEc
Q 023375           90 VKDVDSQ--K--LILN-DG--TEVPYGLLVWS  114 (283)
Q Consensus        90 V~~v~~~--~--v~~~-~g--~~i~~d~vi~a  114 (283)
                      |++++.+  +  +.+. +|  +++++|.|+++
T Consensus        86 v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          86 AKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            9999643  3  4443 44  56999999974

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=9.4e-16  Score=114.51  Aligned_cols=89  Identities=20%  Similarity=0.306  Sum_probs=77.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.+++++|||||++|+|+|..|++++              .+||++++. +++|.+++++++.+.+.|+++||+++++ +
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~lG--------------~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~   86 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSRLG--------------SKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTK   86 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             cCCCeEEEECCCchHHHHHHHHHhhC--------------cceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCE
Confidence            35689999999999999999999998              999999997 8999999999999999999999999999 8


Q ss_pred             eEEEeCC------eEEEcCC-----cEEEeeEEEEc
Q 023375           90 VKDVDSQ------KLILNDG-----TEVPYGLLVWS  114 (283)
Q Consensus        90 V~~v~~~------~v~~~~g-----~~i~~d~vi~a  114 (283)
                      |++++.+      .+++.++     +++++|.|++|
T Consensus        87 v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          87 VISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            9988642      2344432     47999999986

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.63  E-value=6.7e-16  Score=115.70  Aligned_cols=92  Identities=14%  Similarity=0.175  Sum_probs=81.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +.+++++|||||++|+|+|..++.++              .+|+++++. +++|.+++++++.+.+.|+++||+++++ +
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G--------------~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~   89 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLG--------------SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTK   89 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCE
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCC--------------CEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcE
Confidence            45789999999999999999999998              999999997 8999999999999999999999999999 8


Q ss_pred             eEEEeC--Ce--EEEcC--C--cEEEeeEEEEcCCC
Q 023375           90 VKDVDS--QK--LILND--G--TEVPYGLLVWSTGV  117 (283)
Q Consensus        90 V~~v~~--~~--v~~~~--g--~~i~~d~vi~a~G~  117 (283)
                      +++++.  ++  +.+++  |  +++++|.|++|+|.
T Consensus        90 v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          90 TVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            998864  33  44433  3  47999999999983

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=9.9e-16  Score=114.35  Aligned_cols=91  Identities=18%  Similarity=0.334  Sum_probs=77.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      +.+++++|||||++|+|+|..|++++              .+|+++++++++|.+++++++.+.+.|++.||+++++ +|
T Consensus        18 ~~P~~vvIIGgG~iG~E~A~~l~~lG--------------~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v   83 (122)
T d1h6va2          18 YCPGKTLVVGASYVALECAGFLAGIG--------------LDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVP   83 (122)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhhcC--------------CeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEE
Confidence            35679999999999999999999998              9999999889999999999999999999999999999 78


Q ss_pred             EEEeCC--------eEEEcCC-----cEEEeeEEEEcCC
Q 023375           91 KDVDSQ--------KLILNDG-----TEVPYGLLVWSTG  116 (283)
Q Consensus        91 ~~v~~~--------~v~~~~g-----~~i~~d~vi~a~G  116 (283)
                      ++++..        .+++.++     .++++|.|++|+|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          84 TKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            887531        2444322     2467999999998

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.63  E-value=8.4e-15  Score=121.64  Aligned_cols=74  Identities=20%  Similarity=0.386  Sum_probs=64.8

Q ss_pred             cEEEeeEEEEcCCCCCchh-----------hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcch
Q 023375          104 TEVPYGLLVWSTGVGPSTL-----------VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALA  172 (283)
Q Consensus       104 ~~i~~d~vi~a~G~~~~~~-----------~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~  172 (283)
                      +++.+|.+++++|.+|...           ++.++++++++|+|.||+++|| +.|+|||+|||+.         .|.++
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-s~~~iyA~GDv~~---------~~~~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTD---------RVMLT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGC---------SCCCH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCc-CCCCEEEEEECCC---------Cccch
Confidence            5789999999999988632           4566888999999999999999 9999999999984         27788


Q ss_pred             HHHHHHHHHHHHHHH
Q 023375          173 QVAERQGKYLFSLLN  187 (283)
Q Consensus       173 ~~A~~qg~~~a~~i~  187 (283)
                      +.|..||+.+|+++.
T Consensus       218 ~~A~~eg~~aa~~~~  232 (240)
T d1feca1         218 PVAINEGAAFVDTVF  232 (240)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh
Confidence            899999999999985

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.1e-14  Score=115.75  Aligned_cols=153  Identities=19%  Similarity=0.178  Sum_probs=119.9

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CCC--------CC----CCHHHHHHHHHHHHh
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL--------SS----FDDRLRHYATTQLSK   80 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~l--------~~----~~~~~~~~~~~~l~~   80 (283)
                      .|+||||||+|+++|..+++.+              .+|++||+.   .++        +.    ..+.+...+++..++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G--------------~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKG--------------IRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDE   68 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred             cEEEECcCHHHHHHHHHHHHcC--------------CeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhh
Confidence            6899999999999999999988              899999863   111        11    136677777788888


Q ss_pred             CCCEEEeC-ceEEEeCC-------eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEE
Q 023375           81 SGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF  151 (283)
Q Consensus        81 ~gV~v~~~-~V~~v~~~-------~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~Vf  151 (283)
                      .+++.... .+..+...       .....+.+++.++.++.++|..++ .......+.....|.+.||...++ +.|+||
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t-~~~gv~  147 (184)
T d1fl2a1          69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCET-NVKGVF  147 (184)
T ss_dssp             SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBC-SSTTEE
T ss_pred             eeceeeccceeeeecccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceee-eCCCEE
Confidence            99998887 67666543       244567778999999999998765 444455666677899999999998 899999


Q ss_pred             EeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          152 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       152 aiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++|||...        ..+....|..+|..+|.+....+.
T Consensus       148 a~gd~~~~--------~~~~~vva~g~G~~aA~~~~~~l~  179 (184)
T d1fl2a1         148 AAGDCTTV--------PYKQIIIATGEGAKASLSAFDYLI  179 (184)
T ss_dssp             ECSTTBSC--------SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeecCc--------ccCCcEEEEECcHHHHHHHHHHHh
Confidence            99999853        135677899999999998888775

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=5e-15  Score=122.04  Aligned_cols=152  Identities=20%  Similarity=0.251  Sum_probs=104.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC------CC------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FD------------------   67 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~------~~------------------   67 (283)
                      +.-.|+||||||+|+.+|..+++.+              .+|+|||.. ++...      ++                  
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G--------------~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~   69 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLG--------------FNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEA   69 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhH
Confidence            3457999999999999999999988              899999976 43100      00                  


Q ss_pred             --------------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeE--EEc--------CCcEEEeeEE
Q 023375           68 --------------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKL--ILN--------DGTEVPYGLL  111 (283)
Q Consensus        68 --------------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v--~~~--------~g~~i~~d~v  111 (283)
                                                ..+........++.+|+++.+...=++.+.+  ...        ....++++.+
T Consensus        70 ~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~~~~~~~~~~~~~~~~~~~i  149 (233)
T d1v59a1          70 QKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNI  149 (233)
T ss_dssp             GGGTEEECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEE
T ss_pred             hhcCeeEeeceecchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEecccccceeeeeeeccCCeE
Confidence                                      0111222333445577776552111122211  111        1123455555


Q ss_pred             EE--------cCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHH
Q 023375          112 VW--------STGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK  180 (283)
Q Consensus       112 i~--------a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~  180 (283)
                      ++        ++|.+|+.   .++.++++++++|++.||++++| +.|+|||+|||..-         |.+++.|..+|+
T Consensus       150 ~i~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T-~~~~v~A~GD~~~g---------~~l~~~a~~~G~  219 (233)
T d1v59a1         150 IVATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDVTFG---------PMLAHKAEEEGI  219 (233)
T ss_dssp             EECCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGGSSS---------CCCHHHHHHHHH
T ss_pred             EEecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEec-CCCCEEEEcCCccc---------HHHHHHHHHHHH
Confidence            44        77877772   34667888999999999999998 99999999999842         778999999999


Q ss_pred             HHHHHHHH
Q 023375          181 YLFSLLNR  188 (283)
Q Consensus       181 ~~a~~i~~  188 (283)
                      .+|++|..
T Consensus       220 ~aa~~i~~  227 (233)
T d1v59a1         220 AAVEMLKT  227 (233)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcc
Confidence            99999854

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.58  E-value=7e-15  Score=109.83  Aligned_cols=90  Identities=26%  Similarity=0.355  Sum_probs=78.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      +-+++++|||||++|+|+|..+++++              .+||+++++ +++|.+++++.+.+.+.|++.||+++++ +
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G--------------~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~   88 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIG--------------SEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTK   88 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEE
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcC--------------CeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCc
Confidence            46689999999999999999999998              999999998 8999999999999999999999999999 8


Q ss_pred             eEEEeCC--e--EEE--c-CC--cEEEeeEEEEcC
Q 023375           90 VKDVDSQ--K--LIL--N-DG--TEVPYGLLVWST  115 (283)
Q Consensus        90 V~~v~~~--~--v~~--~-~g--~~i~~d~vi~a~  115 (283)
                      |++++.+  +  +.+  . +|  +++++|.|++|+
T Consensus        89 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          89 VVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             eEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            9999754  2  333  2 33  458999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.7e-14  Score=116.62  Aligned_cols=147  Identities=26%  Similarity=0.437  Sum_probs=110.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC----------------------------C--
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------------------------S--   65 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~----------------------------~--   65 (283)
                      .|+||||||+|+++|..+++++              .+|+|||++.+..                            .  
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G--------------~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g   69 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYG--------------QKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYG   69 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGT
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcC
Confidence            6899999999999999999988              8999999864310                            0  


Q ss_pred             -------CC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-h---h
Q 023375           66 -------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-T---L  122 (283)
Q Consensus        66 -------~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~---~  122 (283)
                             ++            ..+....+..+.+.||++....-.......+. .+++.+.++.+++++|..|. +   .
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~-~~~~~~~~~~~iiatG~~p~ip~ip~  148 (217)
T d1gesa1          70 FDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLE-VNGETITADHILIATGGRPSHPREPA  148 (217)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEE-ETTEEEEEEEEEECCCEEECCCEEES
T ss_pred             ccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeec-CCCceeeeeeeeeecCccccCCCCCC
Confidence                   00            01223344556778999887733333333333 46778999999999998875 2   1


Q ss_pred             -----hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          123 -----VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       123 -----~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                           +...++..++++++.+|+.+++ +.++||++||+..-         +..++.|..+|+.++.++.
T Consensus       149 ~~~l~l~~~gv~~~~~~~i~~d~~~~t-~~~~i~~iG~g~~g---------~ela~~~~~~G~~v~~~~~  208 (217)
T d1gesa1         149 NDNINLEAAGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTGA---------VELTPVAVAAGRRLSERLF  208 (217)
T ss_dssp             CTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECSGGGTS---------CCCHHHHHHHHHHHHHHHH
T ss_pred             cCCcccccccEEEcCCccEeeCchhcc-CCCcEEEECCCccH---------HHHHHHHHHHHHHHHHHHh
Confidence                 2234677888999999999998 78999999999852         6789999999999997654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.48  E-value=6.4e-13  Score=109.36  Aligned_cols=98  Identities=16%  Similarity=0.281  Sum_probs=70.6

Q ss_pred             HhCCCEEEeCceEEEeCCeEEEcC--------CcEEEeeEEEEcCCCCCchh-----------hhccCCCCCCCCccccC
Q 023375           79 SKSGVRLVRGIVKDVDSQKLILND--------GTEVPYGLLVWSTGVGPSTL-----------VKSLDLPKSPGGRIGID  139 (283)
Q Consensus        79 ~~~gV~v~~~~V~~v~~~~v~~~~--------g~~i~~d~vi~a~G~~~~~~-----------~~~~~l~~~~~g~i~Vd  139 (283)
                      ...||+++.+.-.....+.+...+        .+.++++.++++++.+|...           ....++..+ +|+|.||
T Consensus       115 ~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~-~G~I~vd  193 (238)
T d1aoga1         115 DTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIK-NGGVQVD  193 (238)
T ss_dssp             HSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEE-TTEECCC
T ss_pred             cccccEEEEEEeeccccccccccccccccccccccccccceeeecccccccccccccceeeecccccEEEEc-CCeEEec
Confidence            356788887633333333322211        24678889999888776521           133456554 7899999


Q ss_pred             CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          140 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       140 ~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      +++|| +.|+|||+|||..         .+.+.+.|..||+.+|++|.
T Consensus       194 e~~~T-~~~~iyAvGDv~~---------~~~l~~~A~~eg~~aa~~i~  231 (238)
T d1aoga1         194 EYSRT-NVSNIYAIGDVTN---------RVMLTPVAINEAAALVDTVF  231 (238)
T ss_dssp             TTCBC-SSTTEEECGGGGT---------SCCCHHHHHHHHHHHHHHHH
T ss_pred             CCeee-ccCCEEEEEEecC---------CccchhhHHHHHHHHHHHHc
Confidence            99999 9999999999984         26788999999999999985

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.41  E-value=3.7e-12  Score=106.31  Aligned_cols=157  Identities=17%  Similarity=0.219  Sum_probs=113.7

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------------------------CC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------------------------SS   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------------------------~~   65 (283)
                      ...|+|||||++|+.+|.+|++.+              .+|+|+|++ .+.                           +.
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G--------------~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~   69 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLG--------------KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPH   69 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChH
Confidence            357999999999999999999987              889999886 321                           00


Q ss_pred             C-------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-----eEEE
Q 023375           66 F-------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-----KLIL  100 (283)
Q Consensus        66 ~-------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~-----~v~~  100 (283)
                      +                                     ...+.+.+.+.+++.||+++++ +|+++..  +     .++.
T Consensus        70 ~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~  149 (253)
T d2gqfa1          70 FVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQ  149 (253)
T ss_dssp             STHHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEE
T ss_pred             HHHHHhhhhcccchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEe
Confidence            0                                     1234455677778889999999 8988753  2     2455


Q ss_pred             cCCcEEEeeEEEEcCCCCCch----------hhhccCCCCCC-----CCc---cccC-CCcccCCCCCEEEeccccccCc
Q 023375          101 NDGTEVPYGLLVWSTGVGPST----------LVKSLDLPKSP-----GGR---IGID-EWLRVPSVQDVFAVGDCSGYLE  161 (283)
Q Consensus       101 ~~g~~i~~d~vi~a~G~~~~~----------~~~~~~l~~~~-----~g~---i~Vd-~~l~~~~~~~VfaiGD~a~~~~  161 (283)
                      .+++++.+|.||+|+|..+.|          +.+.++++.-+     .|.   -.+| .+|+++..|++|.+|.+..+..
T Consensus       150 ~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g  229 (253)
T d2gqfa1         150 VNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTG  229 (253)
T ss_dssp             ETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEE
T ss_pred             cCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeee
Confidence            678899999999999977543          34444544311     122   3355 4788888999999999887654


Q ss_pred             CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375          162 STGKTVLPALAQVAERQGKYLFSLLNR  188 (283)
Q Consensus       162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~  188 (283)
                      ..|+    ..-|.|-..|..+++.|.+
T Consensus       230 ~~gg----~n~~~a~~s~~~~~~~~~~  252 (253)
T d2gqfa1         230 WLGG----YNFQWAWSSAYACALSISR  252 (253)
T ss_dssp             CTTT----HHHHHHHHHHHHHHHHHHT
T ss_pred             ecCC----EehhhhHhHHHHHHHHHhc
Confidence            4342    3467899999999998863

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.34  E-value=1.7e-11  Score=101.62  Aligned_cols=156  Identities=15%  Similarity=0.207  Sum_probs=108.6

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC--------------CC--------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS--------------SF--------------   66 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~--------------~~--------------   66 (283)
                      .|+|||||++|+.+|..|++.+              .+|+|||++ .+..              ..              
T Consensus         4 DViIIGaG~aGl~aA~~la~~G--------------~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEG--------------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR   69 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchh
Confidence            6999999999999999999987              899999976 3210              00              


Q ss_pred             ---------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC---eEEEc
Q 023375           67 ---------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLILN  101 (283)
Q Consensus        67 ---------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~---~v~~~  101 (283)
                                                             ...+.+.+.+.+++.||+++.+ +|++|.  ++   .|+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~  149 (251)
T d2i0za1          70 FLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ  149 (251)
T ss_dssp             GGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET
T ss_pred             hhhhhhhhhhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeC
Confidence                                                   0123445566778899999999 898885  33   37788


Q ss_pred             CCcEEEeeEEEEcCCCCCch----------hhhccCCCCCCC--Ccccc---C-CCcccCCCCCEEEeccccccCcCCCC
Q 023375          102 DGTEVPYGLLVWSTGVGPST----------LVKSLDLPKSPG--GRIGI---D-EWLRVPSVQDVFAVGDCSGYLESTGK  165 (283)
Q Consensus       102 ~g~~i~~d~vi~a~G~~~~~----------~~~~~~l~~~~~--g~i~V---d-~~l~~~~~~~VfaiGD~a~~~~~~~~  165 (283)
                      +++++.+|.||+|+|....+          +.+..+.++...  +.+.+   + ..+..+..|++|+.|++.......++
T Consensus       150 ~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG  229 (251)
T d2i0za1         150 TGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG  229 (251)
T ss_dssp             TCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT
T ss_pred             CCCeEecCeEEEccCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch
Confidence            99999999999999986543          334444443210  11112   1 24444578999999999865433332


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHH
Q 023375          166 TVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       166 ~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                          ...+.|...|+.++......
T Consensus       230 ----~~~~~a~~~G~~a~~~~~~~  249 (251)
T d2i0za1         230 ----YNITSALVTGRIAGTTAGEN  249 (251)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHh
Confidence                24467889999999887554

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.29  E-value=1.6e-11  Score=97.91  Aligned_cols=153  Identities=17%  Similarity=0.183  Sum_probs=104.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC-CCC---------CCCCHHHHHHHHHHHHhC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN-EIL---------SSFDDRLRHYATTQLSKS   81 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~-~~l---------~~~~~~~~~~~~~~l~~~   81 (283)
                      .++||+|||||++|+++|.+|++++              . +|+|+|+. .+.         +...............+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G--------------~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLG--------------YSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDL   68 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCC--------------CCeEEEEEecCcccchhhhhccccccccccccchhhhhhcc
Confidence            5689999999999999999999987              6 59999997 432         223455666666667777


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCchhh-----hccCCCCCCCCccccC-CCcccCCCCCEEEec
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV-----KSLDLPKSPGGRIGID-EWLRVPSVQDVFAVG  154 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~-----~~~~l~~~~~g~i~Vd-~~l~~~~~~~VfaiG  154 (283)
                      +.++... .+.   .......+..+..++.+++++|.......     ..........+....+ ..+++ +.+.||+.|
T Consensus        69 ~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~g  144 (196)
T d1gtea4          69 GVKIICGKSLS---ENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-SEPWVFAGG  144 (196)
T ss_dssp             TCEEEESCCBS---TTSBCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-SSTTEEECS
T ss_pred             ceeEEeeEEec---cceeeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCC-Ccccccccc
Confidence            8888876 442   22222222334558899999997544211     1112223334455555 44666 899999999


Q ss_pred             cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhh
Q 023375          155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA  192 (283)
Q Consensus       155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~  192 (283)
                      |++..         +.++..|..+|+.+|..+.+....
T Consensus       145 ~vigg---------~~~av~a~~~g~~~a~~v~r~~~~  173 (196)
T d1gtea4         145 DIVGM---------ANTTVESVNDGKQASWYIHKYIQA  173 (196)
T ss_dssp             GGGCS---------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCC---------cchHHHHHHHHhhhehhHhhccHh
Confidence            99841         567888999999999988877663

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=4.4e-11  Score=94.38  Aligned_cols=86  Identities=23%  Similarity=0.274  Sum_probs=68.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------CC--CCHHHHHHHHHHHH
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------SS--FDDRLRHYATTQLS   79 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------~~--~~~~~~~~~~~~l~   79 (283)
                      ...++|+||||||+|+++|..|++.+              ++|+|+|+. .+.         |.  ...++.+++.+.++
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G--------------~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~  106 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARG--------------HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIE  106 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhc--------------cceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhh
Confidence            46689999999999999999999988              999999996 442         21  23467788888899


Q ss_pred             hCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCch
Q 023375           80 KSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      +.||+++++ .|+.         + ....+|.||+|+|..|..
T Consensus       107 ~~gV~i~l~~~Vt~---------~-~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         107 VTGVTLKLNHTVTA---------D-QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             HHTCEEEESCCCCS---------S-SSCCSSEEEECCCEECCT
T ss_pred             cCCeEEEeCCEEcc---------c-ccccceeEEEeecCCCcc
Confidence            999999999 5632         1 134689999999987763

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=3e-11  Score=101.07  Aligned_cols=127  Identities=26%  Similarity=0.401  Sum_probs=83.8

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC-------------------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-------------------------------   64 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~-------------------------------   64 (283)
                      .++|||||++|+.+|..+++.+              .+|.|||++.+..                               
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G--------------~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~   68 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHN--------------AKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGF   68 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred             eEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccc
Confidence            5899999999999999999998              9999999764310                               


Q ss_pred             ----CCC------------HHHHHHHHHHHHhCCCEEEeC--ceEEEeCCeEE-------------EcCCcEEEeeEEEE
Q 023375           65 ----SFD------------DRLRHYATTQLSKSGVRLVRG--IVKDVDSQKLI-------------LNDGTEVPYGLLVW  113 (283)
Q Consensus        65 ----~~~------------~~~~~~~~~~l~~~gV~v~~~--~V~~v~~~~v~-------------~~~g~~i~~d~vi~  113 (283)
                          .+.            ..+.+.....|++.||+++.+  +..+  .+.+.             ..+++++.+|.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~--~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiI  146 (259)
T d1onfa1          69 DTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLS--ENRILIKGTKDNNNKDNGPLNEEILEGRNILI  146 (259)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEE
T ss_pred             cchhhhhhhhHHhhhheeeeccccchhhhcccccceEEeeeccccc--ccccccccceeccccccCccceEEEeeeeEEE
Confidence                011            122333456678899999977  2322  11111             11345799999999


Q ss_pred             cCCCCCc---hhhhccCCC----CCCCCccccCCCcccCCCCCEEEecccccc
Q 023375          114 STGVGPS---TLVKSLDLP----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGY  159 (283)
Q Consensus       114 a~G~~~~---~~~~~~~l~----~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~  159 (283)
                      |||.+|.   .....++++    .+.++.+.+|+..++ ...++|++||++..
T Consensus       147 ATGs~P~~~~~~~~~~~l~~~~i~ts~~~~~~d~~~~t-~Vig~gaiGdv~~~  198 (259)
T d1onfa1         147 AVGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQRT-SVNNIYAVGDCCMV  198 (259)
T ss_dssp             CCCCCBCCBCCTTTTSSCTTTTCCBSSSCEEECTTCBC-SSSSEEECSTTEEE
T ss_pred             ecCCCCccccccccccccccceeeecccccccccCCce-eEeeEEEEEEeeeh
Confidence            9999994   122333332    245678888888887 78999999999853

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.17  E-value=6.3e-12  Score=97.25  Aligned_cols=92  Identities=10%  Similarity=-0.018  Sum_probs=78.9

Q ss_pred             CeEEEE--ccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375           15 LHCVVV--GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV   90 (283)
Q Consensus        15 ~~vvVv--GgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V   90 (283)
                      +.++|+  |||++|+|+|..|++++              .+||++++. .+++.+++.....+.+.|.+.||+++++ ++
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G--------------~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v  105 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAG--------------HEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFC  105 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTT--------------CEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEE
T ss_pred             CceEEEecCCChHHHHHHHHHHHcC--------------CeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEE
Confidence            344544  99999999999999998              999999998 6777777778889999999999999999 89


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+++++.+.+.+.....++.++.+.|..|+
T Consensus       106 ~~i~~~~v~l~~~~~~~~~~v~~~~g~~~~  135 (156)
T d1djqa2         106 SRIEPGRMEIYNIWGDGSKRTYRGPGVSPR  135 (156)
T ss_dssp             EEEETTEEEEEETTCSCSCCCCCCTTSCSS
T ss_pred             EEecCcceEEEeeeccccceeeeeeEEEec
Confidence            999999888876666667778888887777

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.09  E-value=5.9e-10  Score=95.08  Aligned_cols=158  Identities=15%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--------C--------------C-----
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------S--------------S-----   65 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~--------------~-----   65 (283)
                      ..+|+|||||++|+-+|..|.+.+              .+|+++|++ .+.        |              .     
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G--------------~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~   72 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELG--------------RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVL   72 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCC--------------CCEEEEEcCCCcccccccCCCCCceecccccccccccccccc
Confidence            368999999999999999999876              889999975 331        0              0     


Q ss_pred             ----------CCHHHHHHHHHHHHhCCC--EEEeC-ceEEEe--CC----eEEEcCCcEEEeeEEEEcCCCCCchhhhc-
Q 023375           66 ----------FDDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKS-  125 (283)
Q Consensus        66 ----------~~~~~~~~~~~~l~~~gV--~v~~~-~V~~v~--~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~-  125 (283)
                                -.+++.+++++..++.++  .+.++ +|+++.  ++    .|++.+++++.+|.||.|+|....+.... 
T Consensus        73 ~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~  152 (298)
T d1w4xa1          73 QEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGAL  152 (298)
T ss_dssp             HHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHH
T ss_pred             CCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcc
Confidence                      024678888898999998  58888 898885  32    58888999999999999999755432221 


Q ss_pred             cCCCC-CCCC---------ccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          126 LDLPK-SPGG---------RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       126 ~~l~~-~~~g---------~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      .+++. ..+|         ....-.-+.+.+.||.|.++--...      .........+..|++++++-|.....
T Consensus       153 ~~~~i~g~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~------~~~~~~~~~~e~q~~~i~~~i~~~~~  222 (298)
T d1w4xa1         153 FKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSP------SALSNMLVSIEQHVEWVTDHIAYMFK  222 (298)
T ss_dssp             HTSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSS------GGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCc------cccccHHHHHHHHHHHHHHHHHHHHh
Confidence            12221 1111         1222233556789999987533210      11123345577889999987776554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.07  E-value=1.6e-10  Score=97.06  Aligned_cols=99  Identities=10%  Similarity=0.073  Sum_probs=63.5

Q ss_pred             CCEEEeC-ceEEEeCC----------eEEEc-----CCcEEEeeEEEEcCCCCCchhh----hccCCCC---------CC
Q 023375           82 GVRLVRG-IVKDVDSQ----------KLILN-----DGTEVPYGLLVWSTGVGPSTLV----KSLDLPK---------SP  132 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~----------~v~~~-----~g~~i~~d~vi~a~G~~~~~~~----~~~~l~~---------~~  132 (283)
                      +.+++++ +|++|+.+          .+...     +++.+++|.||+|++...-..+    ....+..         +.
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            5678888 78877531          23332     3457899999999874221100    0000000         11


Q ss_pred             CCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          133 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       133 ~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      ++.+.+++.+++ +.|+||++||+..          +.+.+.|+.+|+.+|+.|...++
T Consensus       323 ~~~~~~~~~~~t-~~pglf~aGd~~~----------g~~~~~A~~~G~~aA~~i~~~L~  370 (373)
T d1seza1         323 DSVLDAIDKMEK-NLPGLFYAGNHRG----------GLSVGKALSSGCNAADLVISYLE  370 (373)
T ss_dssp             HHHHHHHHHHHH-HSTTEEECCSSSS----------CSSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcEeecccccCC-CCCCEEEEecCCC----------chhHHHHHHHHHHHHHHHHHHHh
Confidence            123444566777 7899999999984          44678899999999999999885

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=2.8e-10  Score=88.20  Aligned_cols=106  Identities=14%  Similarity=0.189  Sum_probs=76.9

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHH------HhhcC----------------C-CCCccEEEEEeC-C-CCCCCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDV------RQRYS----------------H-VKDYIHVTLIEA-N-EILSSF   66 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~------~~~~~----------------~-~~~~~~V~li~~-~-~~l~~~   66 (283)
                      ...++|+|||||++|+|+|..+++.+....      .+..+                . .....++++++. . .+...+
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  106 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGL  106 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTS
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccceeccccceEEEEEeccchhcccc
Confidence            345899999999999999999998763210      00000                0 012345666554 3 455566


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEEc-CCc--EEEeeEEEEcCCC
Q 023375           67 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILN-DGT--EVPYGLLVWSTGV  117 (283)
Q Consensus        67 ~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~-~g~--~i~~d~vi~a~G~  117 (283)
                      ...........++..||+++++ +|.+++++++.+. +|+  +++||+||+|+|.
T Consensus       107 ~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         107 GKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             CTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             chhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence            7777788889999999999999 8999999987653 443  5899999999994

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.4e-09  Score=80.73  Aligned_cols=91  Identities=22%  Similarity=0.241  Sum_probs=74.9

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      --+.++|+|||||.+++|.|..|+++.              .+|+++++.+-+. .++.+.+.+.+.....+|.++.+ .
T Consensus        24 ~~~~k~V~VvGgGdsA~e~A~~L~~~a--------------~~V~li~r~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~   88 (126)
T d1trba2          24 FYRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVENGNIILHTNRT   88 (126)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCC-CCHHHHHHHHHHHHTSSEEEECSCE
T ss_pred             HhCCCEEEEECCCHHHHHHHHHHhhcC--------------CcEEEEeeccccc-chhHHHHHHHHhhcccceeEecceE
Confidence            357799999999999999999999987              8999999984443 46777888888888889999999 7


Q ss_pred             eEEEeCC-----eEEEcCC------cEEEeeEEEEcCC
Q 023375           90 VKDVDSQ-----KLILNDG------TEVPYGLLVWSTG  116 (283)
Q Consensus        90 V~~v~~~-----~v~~~~g------~~i~~d~vi~a~G  116 (283)
                      +.++.++     +|++.|.      +++++|-++++.|
T Consensus        89 v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          89 LEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            9898764     3556542      4699999999987

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.03  E-value=1.4e-09  Score=89.02  Aligned_cols=102  Identities=17%  Similarity=0.180  Sum_probs=65.7

Q ss_pred             CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-hhhc--cCCC------CCCCCccccC----CCcc
Q 023375           82 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKS--LDLP------KSPGGRIGID----EWLR  143 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~--~~l~------~~~~g~i~Vd----~~l~  143 (283)
                      +.++..+ .+..+...    .|++.+|+++.+|.++++.+..... ....  ..++      .+..+...++    +.++
T Consensus       224 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~~~  303 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQLR  303 (347)
T ss_dssp             CTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHHHH
T ss_pred             ccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhhcc
Confidence            4556666 56666543    4677899999999999987642210 0000  0111      1112222232    3345


Q ss_pred             cCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          144 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       144 ~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      + +.++||++||+++.       ..|..++.|+.+|..+|+.|...++
T Consensus       304 ~-~~~~v~~~GD~~~~-------~~~~~~~gA~~sG~~aA~~l~~~~~  343 (347)
T d1b5qa1         304 A-PVGRVYFTGEHTSE-------HYNGYVHGAYLSGIDSAEILINCAQ  343 (347)
T ss_dssp             C-CBTTEEECSGGGCS-------SCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-ccCCEEEEEccccC-------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5 67899999999852       3477889999999999999998876

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.93  E-value=1.6e-09  Score=92.23  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=60.6

Q ss_pred             HhCCCEEEeC-ceEEEeCC--eE--EE----cCCcEEEeeEEEEcCCCCCchhhhcc----CCCC----------CCCCc
Q 023375           79 SKSGVRLVRG-IVKDVDSQ--KL--IL----NDGTEVPYGLLVWSTGVGPSTLVKSL----DLPK----------SPGGR  135 (283)
Q Consensus        79 ~~~gV~v~~~-~V~~v~~~--~v--~~----~~g~~i~~d~vi~a~G~~~~~~~~~~----~l~~----------~~~g~  135 (283)
                      ++.|++++++ +|++|+.+  ++  ..    .++++++||.||+|++..   .+...    +++.          .+...
T Consensus       246 ~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~---~l~~i~~~p~l~~~~~~ai~~~~~~~~~  322 (370)
T d2iida1         246 RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR---AVRLIKFNPPLLPKKAHALRSVFTPYQF  322 (370)
T ss_dssp             HHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH---HHTTSEEESCCCHHHHHHHHHCCCTTHH
T ss_pred             HhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHH---HHhhCccCCCCCHHHHHHHHhcCCcccc
Confidence            4568999999 89998643  33  33    235689999999998632   22211    1110          00001


Q ss_pred             cccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          136 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       136 i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                      ....+.+.. ...+||++||++..       + ....+.|+..|..||.+|..-
T Consensus       323 ~~~~~~~~~-~~g~v~~aGd~~~~-------~-~~~~~~a~~sG~~aA~~i~~a  367 (370)
T d2iida1         323 QHFSDPLTA-SQGRIYFAGEYTAQ-------A-HGWIDSTIKSGLRAARDVNLA  367 (370)
T ss_dssp             HHHHHHHHC-CBTTEEECSGGGSS-------S-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhc-ccCCEEEecccccC-------C-CcccHHHHHHHHHHHHHHHhh
Confidence            122233333 34579999998852       1 334677999999999998754

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=3.8e-08  Score=79.93  Aligned_cols=92  Identities=16%  Similarity=0.171  Sum_probs=66.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCC-----CC----C-----------C---HH
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EIL-----SS----F-----------D---DR   69 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l-----~~----~-----------~---~~   69 (283)
                      -.|+|||||++|+|+|...++.+              .++.||+.+  .+.     |.    .           .   ..
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G--------------~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a   68 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKG--------------VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWA   68 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCC--------------CcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhh
Confidence            36999999999999999999998              899999864  111     10    0           0   12


Q ss_pred             HHHHHHHHHHh-CCCEEEeCceEEE--eCC---eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           70 LRHYATTQLSK-SGVRLVRGIVKDV--DSQ---KLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        70 ~~~~~~~~l~~-~gV~v~~~~V~~v--~~~---~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      .+..+++.+.+ .+++++.+.|.++  +++   +|++.+|.++.++.||+|||..-+
T Consensus        69 ~raQ~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          69 FHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             HHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHHHHHhhhcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence            33334444443 4889988877765  333   578899999999999999998543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.84  E-value=1.9e-09  Score=90.25  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=58.9

Q ss_pred             hCCCEEEeC-ceEEEeCC----eEEEc-CC--cEEEeeEEEEcCCCCCc-hhhhccCCC-------CCCCCc---cccCC
Q 023375           80 KSGVRLVRG-IVKDVDSQ----KLILN-DG--TEVPYGLLVWSTGVGPS-TLVKSLDLP-------KSPGGR---IGIDE  140 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~----~v~~~-~g--~~i~~d~vi~a~G~~~~-~~~~~~~l~-------~~~~g~---i~Vd~  140 (283)
                      +.|++++++ +|++|+.+    .|++. ++  +++++|.||+|+|.... .++..+.-+       ....|.   +...+
T Consensus       231 ~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (347)
T d2ivda1         231 SLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAID  310 (347)
T ss_dssp             HHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTHHHHHHHHH
T ss_pred             HhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCcccceeccc
Confidence            347899999 89999754    34443 33  46899999999985321 122221100       111121   11122


Q ss_pred             CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375          141 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN  187 (283)
Q Consensus       141 ~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~  187 (283)
                      ... ++.|++|++||...          ......|+.+|..+|+.|.
T Consensus       311 ~~~-~~~p~~~~~G~~~~----------g~~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         311 AAL-QRLPGLHLIGNAYK----------GVGLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHH-HTSTTEEECSTTTS----------CCSHHHHHHHHHHHHHHHC
T ss_pred             ccc-cCCCCEEEeccccc----------CCCHHHHHHHHHHHHHHhh
Confidence            222 37899999999864          2235568889999998764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.83  E-value=4.7e-08  Score=83.59  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|++|+.+|.+|++.+              .+|+|||+.
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G--------------~~V~llEk~   55 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAG--------------AKVILLEKE   55 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTT--------------CCEEEECSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence            47999999999999999999887              889999875

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.83  E-value=4.3e-08  Score=84.35  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC----------------------------
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------------------------   63 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l----------------------------   63 (283)
                      ..|+|+|||||++|+.+|.+|++.+.            ..+|+++|++ .+.                            
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~------------~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKA------------FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIV   70 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC------------CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCC------------CCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccc
Confidence            35799999999999999999976541            1589999987 431                            


Q ss_pred             ------------------------------------CCC--CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEE
Q 023375           64 ------------------------------------SSF--DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLIL  100 (283)
Q Consensus        64 ------------------------------------~~~--~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~  100 (283)
                                                          +.+  .+++.+++....++.+..++++ +|++|+.+    .|++
T Consensus        71 ~~~~~~~~~s~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~  150 (335)
T d2gv8a1          71 GPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTY  150 (335)
T ss_dssp             CSSSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEE
T ss_pred             ccccccccccccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEE
Confidence                                                000  1356777777777788889999 89888653    3665


Q ss_pred             cCC---c---EEEeeEEEEcCCCCCc
Q 023375          101 NDG---T---EVPYGLLVWSTGVGPS  120 (283)
Q Consensus       101 ~~g---~---~i~~d~vi~a~G~~~~  120 (283)
                      +++   +   +..+|.||+|+|....
T Consensus       151 ~~~~~~~~~~~~~~d~VI~AtG~~s~  176 (335)
T d2gv8a1         151 KGTKAGSPISKDIFDAVSICNGHYEV  176 (335)
T ss_dssp             EESSTTCCEEEEEESEEEECCCSSSS
T ss_pred             EecCCCCeEEEEEeeEEEEccccccc
Confidence            432   1   4569999999998644

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=2.4e-08  Score=73.82  Aligned_cols=89  Identities=25%  Similarity=0.352  Sum_probs=67.0

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      .-+.++|+|||||.+++|.|.+|++..              .+|+++++.+-+.. .+.+   .++.....+|+++++ +
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a--------------~~V~li~r~~~~~~-~~~~---~~~~~~~~~I~v~~~~~   88 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMKA-DQVL---QDKLRSLKNVDIILNAQ   88 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTB--------------SEEEEECSSSSCCS-CHHH---HHHHHTCTTEEEESSEE
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccC--------------CceEEEeccccccc-cccc---ccccccccceeEEcCcc
Confidence            457899999999999999999999987              89999998744432 2322   223333456999999 8


Q ss_pred             eEEEeCC-----eEEEcC---C--cEEEeeEEEEcCCC
Q 023375           90 VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGV  117 (283)
Q Consensus        90 V~~v~~~-----~v~~~~---g--~~i~~d~vi~a~G~  117 (283)
                      |.++.++     ++++.+   |  +++++|.++++.|.
T Consensus        89 v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          89 TTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             EEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             eEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            9998764     355543   4  46899999999883

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.70  E-value=2.5e-07  Score=76.02  Aligned_cols=93  Identities=20%  Similarity=0.232  Sum_probs=66.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC------CCHHHHHHH------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRLRHYA------------   74 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~------~~~~~~~~~------------   74 (283)
                      ..||+|||||++|+.+|..|++.+              .+|+|+|++ .....      +.+.....+            
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G--------------~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~   69 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAG--------------VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISV   69 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCB
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhcc
Confidence            368999999999999999999887              999999985 43221      122211111            


Q ss_pred             --------------------------------HHHH-HhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCC
Q 023375           75 --------------------------------TTQL-SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTG  116 (283)
Q Consensus        75 --------------------------------~~~l-~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G  116 (283)
                                                      ...+ ...++.++.+ ++++++.+    .++++||+++.+|.+|.|.|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG  149 (265)
T d2voua1          70 PSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADG  149 (265)
T ss_dssp             CCCEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCC
T ss_pred             CCCcceeEeccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccc
Confidence                                            1111 2345777777 78887643    46778999999999999999


Q ss_pred             CCCc
Q 023375          117 VGPS  120 (283)
Q Consensus       117 ~~~~  120 (283)
                      ....
T Consensus       150 ~~s~  153 (265)
T d2voua1         150 GASV  153 (265)
T ss_dssp             TTCH
T ss_pred             cccc
Confidence            7665

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.68  E-value=4.9e-08  Score=81.19  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCC
Q 023375           71 RHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK  130 (283)
Q Consensus        71 ~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~  130 (283)
                      ...+.+.+++.|++++.+ +|++|+.+    .|.+++| ++.||.||+|+|.....+.+.+|+..
T Consensus       154 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~  217 (276)
T d1ryia1         154 CKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN  217 (276)
T ss_dssp             HHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred             hhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCc
Confidence            333455566899999999 89999765    4666665 79999999999988888888888754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.60  E-value=3.1e-08  Score=80.52  Aligned_cols=126  Identities=17%  Similarity=0.160  Sum_probs=78.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C---CCCHHHHHHHHHHHHhCCCE
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S---SFDDRLRHYATTQLSKSGVR   84 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~---~~~~~~~~~~~~~l~~~gV~   84 (283)
                      +|+||||||+|+.+|..|++...            +.+|+++|+. .+.       +   .....+.......+.+.|++
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~------------~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHS------------RAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCA   70 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCS------------SCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEE
T ss_pred             eEEEECccHHHHHHHHHHHhcCC------------CCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCee
Confidence            89999999999999999987642            2899999997 442       1   12335556677788889999


Q ss_pred             EEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375           85 LVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus        85 v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      ++.+ .|.   .+ +.+.+ -.-.+|.+++|+|..+.......+........+......+..+.+..+..|+...
T Consensus        71 ~~~~~~v~---~~-~~~~~-l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  140 (230)
T d1cjca2          71 FYGNVEVG---RD-VTVQE-LQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKR  140 (230)
T ss_dssp             EEBSCCBT---TT-BCHHH-HHHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHH
T ss_pred             EEeeEEeC---cc-ccHHH-HHhhhceEEEEeecccccccccccccccccccccccccceeeccccccccccccc
Confidence            9988 552   11 11100 0124899999999976532222222221112222222333446778888877654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=1.7e-07  Score=69.43  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=65.6

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      --+.++|+|||||.+++|.|.+|++..              .+|++|++.+-+.. .+...   ++.+...+|+++++ +
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a--------------~~V~li~r~~~~ra-~~~~~---~~l~~~~nI~v~~~~~   92 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDAFRA-SKIMQ---QRALSNPKIDVIWNSS   92 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHHHH---HHHHTCTTEEEECSEE
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCC--------------CcEEEEEecccccc-chhhh---hccccCCceEEEeccE
Confidence            457799999999999999999999987              89999999854433 33332   33445567999999 8


Q ss_pred             eEEEeCC-------eEEEc---CC--cEEEeeEEEEcC
Q 023375           90 VKDVDSQ-------KLILN---DG--TEVPYGLLVWST  115 (283)
Q Consensus        90 V~~v~~~-------~v~~~---~g--~~i~~d~vi~a~  115 (283)
                      +.++.++       .+.++   ++  +++++|-+++++
T Consensus        93 v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          93 VVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            9998764       24443   23  579999999874

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.56  E-value=1.7e-06  Score=71.31  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=88.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC-CCCC-----CCCHHH----------------
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN-EILS-----SFDDRL----------------   70 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~-~~l~-----~~~~~~----------------   70 (283)
                      +.+|+|||||++|+-+|..|++.+              . +|+|+|+. .+.+     .+.+..                
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~G--------------i~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~   66 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAG--------------IGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAAT   66 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--------------CCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhh
Confidence            468999999999999999999876              4 88899986 3321     011111                


Q ss_pred             ----------------------------------------HHHHHH--HHHhCCCEEEeC-ceEEEeC--C--eEEEcCC
Q 023375           71 ----------------------------------------RHYATT--QLSKSGVRLVRG-IVKDVDS--Q--KLILNDG  103 (283)
Q Consensus        71 ----------------------------------------~~~~~~--~l~~~gV~v~~~-~V~~v~~--~--~v~~~~g  103 (283)
                                                              ......  .....++.+..+ +++.+..  +  .+++.++
T Consensus        67 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g  146 (288)
T d3c96a1          67 AIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDG  146 (288)
T ss_dssp             SEEECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEET
T ss_pred             hcccccceeEcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcC
Confidence                                                    011111  112356777777 6766543  3  3555554


Q ss_pred             ----cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHH
Q 023375          104 ----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG  179 (283)
Q Consensus       104 ----~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg  179 (283)
                          +++.+|.+|.|-|.....  .......    ..............++..+||+++...|..    ..-+..|+..+
T Consensus       147 ~~~~~~~~ad~vi~ADG~~S~v--r~~~~~~----~~~~~~~~~~~~~~~~~~~gda~h~~~p~~----g~G~~~ai~d~  216 (288)
T d3c96a1         147 HGKPQALGADVLVGADGIHSAV--RAHLHPD----QRPLRDPLPHWGRGRITLLGDAAHLMYPMG----ANGASQAILDG  216 (288)
T ss_dssp             TSCEEEEEESEEEECCCTTCHH--HHHHCTT----CCCCCCCCSCCCBTTEEECTHHHHCCCSST----TCTHHHHHHHH
T ss_pred             CCCeEEEeeceeeccCCcccee--eeeeccc----cccccccccccccCcceecccccceeCCcc----ccchhhhhhhH
Confidence                479999999999986542  1110000    011111112224568999999997544322    23345677777


Q ss_pred             HHHHHHHH
Q 023375          180 KYLFSLLN  187 (283)
Q Consensus       180 ~~~a~~i~  187 (283)
                      ..++..+.
T Consensus       217 ~~l~~~l~  224 (288)
T d3c96a1         217 IELAAALA  224 (288)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77776553

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.56  E-value=1e-07  Score=72.68  Aligned_cols=87  Identities=10%  Similarity=0.063  Sum_probs=58.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC--CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ..++|+|||||.+|+|+|..+.+++.             .+|+++++..  -++...     .....+...+++++.. .
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA-------------~~V~vi~rr~~~~~~a~~-----~~~~~a~~~~~~~~~~~~  105 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGA-------------RRVFLVFRKGFVNIRAVP-----EEVELAKEEKCEFLPFLS  105 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTC-------------SEEEEECSSCGGGCCSCH-----HHHHHHHHTTCEEECSEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCC-------------cceeEEEeCChhhhccch-----hheeecccccceeEeccc
Confidence            34689999999999999999998862             6788998753  223222     2223455678888877 5


Q ss_pred             eEEEeC--C---eEEE------cCC---------cEEEeeEEEEcCCC
Q 023375           90 VKDVDS--Q---KLIL------NDG---------TEVPYGLLVWSTGV  117 (283)
Q Consensus        90 V~~v~~--~---~v~~------~~g---------~~i~~d~vi~a~G~  117 (283)
                      +.++..  +   .+..      ++|         .+++||.||+|.|.
T Consensus       106 ~~ei~~~~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         106 PRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             cEEEEecCCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            555532  1   1111      111         36899999999983

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.55  E-value=2.7e-07  Score=76.86  Aligned_cols=60  Identities=22%  Similarity=0.221  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCC
Q 023375           70 LRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK  130 (283)
Q Consensus        70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~  130 (283)
                      +...+.+.+++.|++++.+ +|++++.+    .|.+++| ++.+|.||+|+|...+.++..+++..
T Consensus       152 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~~~  216 (281)
T d2gf3a1         152 CIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNLDI  216 (281)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEEC
T ss_pred             cccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHHhcCCcc
Confidence            3444555667899999999 89988643    4566665 69999999999988778888887755

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.4e-07  Score=77.21  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=64.5

Q ss_pred             HhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCC---------CCCCCcc-ccCCCc
Q 023375           79 SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLP---------KSPGGRI-GIDEWL  142 (283)
Q Consensus        79 ~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~---------~~~~g~i-~Vd~~l  142 (283)
                      ++.|++++++ +|++|..+    .|++.||+++.+|.||+|++...-. +.-...++         ....+.. .....+
T Consensus       218 ~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (383)
T d2v5za1         218 DLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVL  297 (383)
T ss_dssp             HHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHGGGT
T ss_pred             HHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccchhhhhh
Confidence            3568899999 89999765    4778899999999999998642110 00000111         1111211 222222


Q ss_pred             ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                      .. ...+|+.+|+....       ..+.....|+.+|+.+|..|...+
T Consensus       298 ~~-~~~~~~~~G~~~~~-------~~~g~~~ga~~~g~~~a~~i~~~~  337 (383)
T d2v5za1         298 RQ-PVDRIYFAGTETAT-------HWSGYMEGAVEAGERAAREILHAM  337 (383)
T ss_dssp             TC-CBTTEEECSGGGCS-------SSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred             cC-CcCceEeccccccc-------cCCcchHHHHHHHHHHHHHHHHHh
Confidence            22 45678988976542       124456778999999999886655

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.52  E-value=3.6e-07  Score=76.96  Aligned_cols=58  Identities=14%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             HHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCC
Q 023375           72 HYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK  130 (283)
Q Consensus        72 ~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~  130 (283)
                      ..+.+..++.|++++.+ +|+++..  +   .|.+.+| ++.||.||+|+|.....+.+.+++.+
T Consensus       152 ~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~l  215 (305)
T d1pj5a2         152 QLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAV  215 (305)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCC
T ss_pred             hhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCcc
Confidence            33445556889999999 8988854  3   3555555 79999999999988777777776654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.50  E-value=2.2e-06  Score=73.03  Aligned_cols=114  Identities=12%  Similarity=0.017  Sum_probs=65.8

Q ss_pred             HHHHHhCCCEEEeC-ceEEE-e-CCe---EEE---cCCc--EEEeeEEEEcCCCCCchhh----------------hccC
Q 023375           75 TTQLSKSGVRLVRG-IVKDV-D-SQK---LIL---NDGT--EVPYGLLVWSTGVGPSTLV----------------KSLD  127 (283)
Q Consensus        75 ~~~l~~~gV~v~~~-~V~~v-~-~~~---v~~---~~g~--~i~~d~vi~a~G~~~~~~~----------------~~~~  127 (283)
                      .+..++.||+++.+ .+.++ . ++.   +..   .+|+  ++.++.||+|||.....+.                ...|
T Consensus       165 ~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~~G  244 (336)
T d2bs2a2         165 ANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETG  244 (336)
T ss_dssp             HHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTS
T ss_pred             HHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhhhhh
Confidence            34445678899888 66554 2 332   222   3564  4789999999987643111                1123


Q ss_pred             -CCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375          128 -LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI  189 (283)
Q Consensus       128 -l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~  189 (283)
                       .++...+++.++++.++ +.+++|++||++........+.-......+...+..+++.+...
T Consensus       245 ~~~l~~~~~iq~~~~~~t-~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~~  306 (336)
T d2bs2a2         245 IAQLGNMGGIRTDYRGEA-KLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEH  306 (336)
T ss_dssp             SSCEECCCEEECCTTSBC-SSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccceeechhhcc-cCCcceeccccccccccccccchhhccchhhhhcchhHHHHHhh
Confidence             23445678999999998 89999999998753211111111222334445555555554443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.43  E-value=2.3e-06  Score=72.02  Aligned_cols=32  Identities=34%  Similarity=0.405  Sum_probs=29.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||++|+.+|.+|++.+              .+|+|||+.
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G--------------~~V~lvEK~   48 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSG--------------AKVILIEKE   48 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence            47999999999999999999987              899999975

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.40  E-value=1.1e-05  Score=70.36  Aligned_cols=162  Identities=19%  Similarity=0.286  Sum_probs=100.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC------C---------------------
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------F---------------------   66 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~------~---------------------   66 (283)
                      -.|+||||||+|+.+|..|+++....        ..+.+|.|||++ .+...      +                     
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~--------~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~  104 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQH--------EKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNT  104 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHT--------TCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhh--------cCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhcccccc
Confidence            48999999999999999999743210        123888998875 22100      0                     


Q ss_pred             -----------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce----EEE----
Q 023375           67 -----------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LIL----  100 (283)
Q Consensus        67 -----------------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~----v~~----  100 (283)
                                                         .......+.+..++.|+++..+ .+.++..  +.    +..    
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  184 (380)
T d2gmha1         105 PVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVG  184 (380)
T ss_dssp             ECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEE
T ss_pred             ceecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeeccccccc
Confidence                                               0234445556667788998887 6666532  11    111    


Q ss_pred             --cC---------CcEEEeeEEEEcCCCCCc---hhhhccCCCC--CCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375          101 --ND---------GTEVPYGLLVWSTGVGPS---TLVKSLDLPK--SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG  164 (283)
Q Consensus       101 --~~---------g~~i~~d~vi~a~G~~~~---~~~~~~~l~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~  164 (283)
                        .+         +.....+..+++.|.+..   .++....+..  ...+.+.-   +.....+++..+||+|.+.+|..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~s---ip~l~~~G~lLVGDAAG~vnP~~  261 (380)
T d2gmha1         185 IQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQS---IPKLTFPGGLLIGCSPGFMNVPK  261 (380)
T ss_dssp             ECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGG---CCCCEETTEEECTTTTCCCBTTT
T ss_pred             ccccccccccccccccccccEEEEeeeCCCcchHHHHhhhhhcccccccccccc---ccccccCCeeEEeccccccchhh
Confidence              11         224557788889988765   2333333221  11111111   11124689999999998766422


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          165 KTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       165 ~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                          -.-.+.|+..|+.||+.+...+.
T Consensus       262 ----g~GI~~Am~SG~lAAeai~~al~  284 (380)
T d2gmha1         262 ----IKGTHTAMKSGTLAAESIFNQLT  284 (380)
T ss_dssp             ----TBCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----cCCeeeeeccHHHHHHHHHHHHH
Confidence                34567899999999999988775

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.36  E-value=3.1e-08  Score=80.92  Aligned_cols=92  Identities=21%  Similarity=0.261  Sum_probs=57.8

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCC---------C--HHHHHHHHHHHH
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSF---------D--DRLRHYATTQLS   79 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~---------~--~~~~~~~~~~l~   79 (283)
                      +..++|+|||||++|+.+|.+|++.+              .+|+++|+. ++...+         .  ..........+.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G--------------~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESG--------------YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQIT  112 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhc--------------cceeeEeeccccCCccccccccceeecccccchhHHHHHH
Confidence            56689999999999999999999987              999999987 443211         1  122233333333


Q ss_pred             h---CCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCch
Q 023375           80 K---SGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        80 ~---~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      +   .++++..    ......+..++..++.+|.+|+|||..+..
T Consensus       113 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~vviAtG~~~~~  153 (233)
T d1djqa3         113 KLLKKNKESQL----ALGQKPMTADDVLQYGADKVIIATGASECT  153 (233)
T ss_dssp             HHHTTCTTCEE----ECSCCCCCHHHHHTSCCSEEEECCCEECCH
T ss_pred             HHhhcceeeee----ecccccccchhhhhhccceeeeccCCCccc
Confidence            2   2222111    111112222333457899999999998764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.34  E-value=3.8e-06  Score=71.27  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=28.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|++|+.+|.++++.+              .+|+|||+.
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G--------------~~V~vlEK~   51 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAG--------------ANVILVDKA   51 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence            47999999999999999999987              889999875

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=1.2e-07  Score=76.92  Aligned_cols=96  Identities=13%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CC--CCHHHHHHHHHHHHhC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SS--FDDRLRHYATTQLSKS   81 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~--~~~~~~~~~~~~l~~~   81 (283)
                      ++++|+|||+||+|+.+|.+|++.+..       -...+.+|+|+|+. .+.        |.  ......+...+.+.+.
T Consensus         1 rp~~VaVIGaGpaGL~aA~~L~~~G~~-------~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~   73 (239)
T d1lqta2           1 RPYYIAIVGSGPSAFFAAASLLKAADT-------TEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDP   73 (239)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHH-------STTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTST
T ss_pred             CCcEEEEECcCHHHHHHHHHHHHcCCc-------cccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccC
Confidence            457999999999999999999988721       01123699999996 332        22  2345566677788899


Q ss_pred             CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      |++++++ .+..    .+.+++ -...+|.+++++|..+.
T Consensus        74 g~~~~~~~~v~~----~~~~~~-~~~~~~~v~~atGa~~~  108 (239)
T d1lqta2          74 RFRFFGNVVVGE----HVQPGE-LSERYDAVIYAVGAQSR  108 (239)
T ss_dssp             TEEEEESCCBTT----TBCHHH-HHHHSSEEEECCCCCEE
T ss_pred             CceEEEEEEecc----ccchhh-hhccccceeeecCCCcc
Confidence            9999998 5521    111110 11358999999998755

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.24  E-value=9.5e-07  Score=62.96  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375           10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      +.-+.++|+|||+|.+|+++|.+|+...              .+++++.+. .... .             ..++... .
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~a--------------k~v~~~~~r~~~~~-~-------------~~~~~~~-~   78 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVA--------------KHPIYQSLLGGGDI-Q-------------NESLQQV-P   78 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTS--------------CSSEEEECTTCCSC-B-------------CSSEEEE-C
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhc--------------CEEEEEEecCcccc-c-------------cccceec-C
Confidence            3457799999999999999999999876              566666554 2211 1             1122222 2


Q ss_pred             ceEEEeCC--eEEEcCCcEEE-eeEEEEc
Q 023375           89 IVKDVDSQ--KLILNDGTEVP-YGLLVWS  114 (283)
Q Consensus        89 ~V~~v~~~--~v~~~~g~~i~-~d~vi~a  114 (283)
                      .+.+++.+  .+.+.||+++. .|.||+|
T Consensus        79 ~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          79 EITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             CEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             CeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence            46677654  69999999886 7999987

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.19  E-value=3.4e-06  Score=67.80  Aligned_cols=28  Identities=18%  Similarity=0.279  Sum_probs=25.1

Q ss_pred             ceEEEeCCeEEEcCCcEEEeeEEEEcCCC
Q 023375           89 IVKDVDSQKLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        89 ~V~~v~~~~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      .|+++++++|+++|| ++++|.||.|||+
T Consensus       208 ~I~~~~~~gV~~~dg-~~~~D~VV~ATGf  235 (235)
T d1w4xa2         208 PIETITPRGVRTSER-EYELDSLVLATGF  235 (235)
T ss_dssp             CEEEECSSEEEESSC-EEECSEEEECCCC
T ss_pred             CCeEEeCCeEEECCC-EEcCCEEEeCCCC
Confidence            588889999999888 5899999999995

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.12  E-value=1.9e-05  Score=65.47  Aligned_cols=142  Identities=18%  Similarity=0.239  Sum_probs=86.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C--CC-----CCC--------------------
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I--LS-----SFD--------------------   67 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~--l~-----~~~--------------------   67 (283)
                      +|+|||||++|+-+|..|++.+              .+|+|+|+.. .  .+     .+.                    
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G--------------~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~   69 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAG--------------IDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDG   69 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHC
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhc
Confidence            7999999999999999999987              8899998752 1  00     000                    


Q ss_pred             ---------------------------------HHHHHHHHHHHHhCCCEEEeC-c-eEEEeCC----eEEE-cCCc--E
Q 023375           68 ---------------------------------DRLRHYATTQLSKSGVRLVRG-I-VKDVDSQ----KLIL-NDGT--E  105 (283)
Q Consensus        68 ---------------------------------~~~~~~~~~~l~~~gV~v~~~-~-V~~v~~~----~v~~-~~g~--~  105 (283)
                                                       ..+.+.+.+.+++.+..++.. . +..+..+    .|++ .+|+  +
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~  149 (292)
T d1k0ia1          70 LVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR  149 (292)
T ss_dssp             EEESCEEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEE
T ss_pred             ccccceEEEecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEE
Confidence                                             234555566667777777766 4 4445433    3444 3554  5


Q ss_pred             EEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHH
Q 023375          106 VPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSL  185 (283)
Q Consensus       106 i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~  185 (283)
                      +.+|.||-|.|..... -+.++.              ........+.+||++....|..    ......+...+...+..
T Consensus       150 i~a~~vVgADG~~S~v-R~~i~~--------------~~~~~~~~~~~~~~~~~~~p~~----~~~~n~~~~d~~~l~~~  210 (292)
T d1k0ia1         150 LDCDYIAGCDGFHGIS-RQSIPA--------------ERMQHGRLFLAGDAAHIVPPTG----AKGLNLAASDVSTLYRL  210 (292)
T ss_dssp             EECSEEEECCCTTCST-GGGSCG--------------GGSEETTEEECGGGTEECCGGG----TCHHHHHHHHHHHHHHH
T ss_pred             EEeCEEEECCCCCCcc-cceeee--------------ccccccccccceeeeeecCCcc----ccccccccccccccccc
Confidence            7899999999977641 011111              1113466788999986433211    22233445555555554


Q ss_pred             HHHHh
Q 023375          186 LNRIG  190 (283)
Q Consensus       186 i~~~~  190 (283)
                      +...+
T Consensus       211 ~~~~~  215 (292)
T d1k0ia1         211 LLKAY  215 (292)
T ss_dssp             HHHHH
T ss_pred             eeeEe
Confidence            44443

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=7e-05  Score=63.53  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=28.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|++|+.+|.++++.+              .+|+|+++.
T Consensus         8 ~DVlVVG~G~AGl~AAl~aa~~G--------------~~V~lleK~   39 (330)
T d1neka2           8 FDAVVIGAGGAGMRAALQISQSG--------------QTCALLSKV   39 (330)
T ss_dssp             ESCEEECCSHHHHHHHHHHHHTT--------------CCCEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHcC--------------CeEEEEeCC
Confidence            47999999999999999999887              788888764

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.8e-05  Score=64.81  Aligned_cols=80  Identities=25%  Similarity=0.388  Sum_probs=52.9

Q ss_pred             HHhCCCEEEeC-ceEEEe--CC---eEE---EcCCc--EEEeeEEEEcCCCCCch----------------hhhccCCCC
Q 023375           78 LSKSGVRLVRG-IVKDVD--SQ---KLI---LNDGT--EVPYGLLVWSTGVGPST----------------LVKSLDLPK  130 (283)
Q Consensus        78 l~~~gV~v~~~-~V~~v~--~~---~v~---~~~g~--~i~~d~vi~a~G~~~~~----------------~~~~~~l~~  130 (283)
                      .+..+|+++.+ .+.++-  ++   ++.   ..+|+  .+.++.||+|||--..-                .....|.++
T Consensus       145 ~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa~l  224 (311)
T d1kf6a2         145 LQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPL  224 (311)
T ss_dssp             TTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCE
T ss_pred             HccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcccce
Confidence            33457999998 777762  23   222   24565  45789999999974431                112334555


Q ss_pred             CCCCccccCCCcccCCCCCEEEeccccc
Q 023375          131 SPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus       131 ~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      ..-.++.++++..+ ..+++|+.+++..
T Consensus       225 ~dme~iq~~p~~~~-~~~~~~~~~~~~~  251 (311)
T d1kf6a2         225 RDMGGIETDQNCET-RIKGLFAVGECSS  251 (311)
T ss_dssp             ESCCEEECCTTSBC-SSBTEEECGGGEE
T ss_pred             eecccccccccchh-cccCCCcCcceee
Confidence            44567888888777 7899999999764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=2.6e-05  Score=65.44  Aligned_cols=53  Identities=19%  Similarity=0.252  Sum_probs=41.3

Q ss_pred             EEEeeEEEEcCCCCCch----------------hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375          105 EVPYGLLVWSTGVGPST----------------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG  158 (283)
Q Consensus       105 ~i~~d~vi~a~G~~~~~----------------~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~  158 (283)
                      .+.++.||+|+|-....                .....|.++...+++.++++.++ +.|++|++|+++.
T Consensus       193 ~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA~~aGa~l~~m~~iq~~~~g~t-~~~g~~a~G~~~~  261 (305)
T d1chua2         193 TCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANCGGVMVDDHGRT-DVEGLYAIGEVSY  261 (305)
T ss_dssp             EEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHHHHTTCCEECSCEEECCTTCBC-SSBTEEECGGGEE
T ss_pred             EEeecceEEeeeccccceeccCCCCceecccEeeccccceeeEecceeEECCcccC-CCCCceecccEEE
Confidence            46899999999965421                22345777777789999999998 8999999999753

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=2.4e-05  Score=65.95  Aligned_cols=53  Identities=9%  Similarity=-0.019  Sum_probs=35.8

Q ss_pred             cccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375          136 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK  191 (283)
Q Consensus       136 i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~  191 (283)
                      +.++...++ +.|++|++||++...+.  ..-.-++...++..|+.+|+.|.+.+.
T Consensus       258 iv~~~~~~~-~~pgl~~~Gdaa~~v~g--~~r~G~t~g~m~~sG~~aA~~i~~~l~  310 (311)
T d2gjca1         258 VVIHSGAYA-GVDNMYFAGMEVAELDG--LNRMGPTFGAMALSGVHAAEQILKHFA  310 (311)
T ss_dssp             HHHHCEECT-TSTTEEECTHHHHHHHT--CCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCcEE-ccCCEEEEeeecCcccC--cCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            444555555 78999999998753221  111123566678899999999988764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.7e-05  Score=64.95  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=32.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI   62 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~   62 (283)
                      ++..+|+|||||.+|+.+|.+|++.+              .+|+|+|+. ++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G--------------~~V~VlEa~~r~   40 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFG--------------MDVTLLEARDRV   40 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTT--------------CEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCC
Confidence            34568999999999999999999987              899999987 44

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.54  E-value=0.00065  Score=57.47  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||+|++|+-+|.++++...          +.+.+|+|||+.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~----------~~G~~V~vieK~   57 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAK----------LGGLKVTLVEKA   57 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHT----------TTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHH----------hCcCEEEEEeCC
Confidence            479999999999999999987542          123899999974

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.49  E-value=5.3e-05  Score=61.08  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|||||++|+.+|.+|++.+              .+|+|+|+.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G--------------~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKG--------------YSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence            358999999999999999999987              899999975

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.47  E-value=4.9e-05  Score=64.24  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL   63 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l   63 (283)
                      +.++|+|||||++|+-+|..|++.+              .+|+|+|+. ++.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G--------------~~V~viEk~~~iG   38 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKG--------------HQVHIIDQRDHIG   38 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCC--------------CCEEEEECCCCCc
Confidence            3579999999999999999999876              899999987 543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.46  E-value=0.00012  Score=58.82  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHh
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDF   36 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~   36 (283)
                      ..++|+|||||.+++.+|..+.+.
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcC
Confidence            468999999999999999999864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.44  E-value=0.00074  Score=55.40  Aligned_cols=34  Identities=32%  Similarity=0.458  Sum_probs=29.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ....|+|||||++|+.+|..|++. +              .+|+++|+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G--------------~~V~vlE~~   66 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPN--------------VQVAIIEQS   66 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTT--------------SCEEEEESS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccC--------------CeEEEEecC
Confidence            345799999999999999999864 5              999999986

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00013  Score=57.79  Aligned_cols=33  Identities=30%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      -.|+|||||.+|+-+|..|++.+              .+|+|+|++.
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G--------------~~V~vlE~~~   38 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDG--------------KKVLHIDKQD   38 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEcCCC
Confidence            36999999999999999999987              8999999973

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00046  Score=54.76  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSD   35 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~   35 (283)
                      ..++|+|||||.+++.+|..|..
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~   60 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLT   60 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHS
T ss_pred             cCceEEEECCCchhHhhhhhhcc
Confidence            35799999999999999998874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00022  Score=59.54  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=30.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL   63 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l   63 (283)
                      ..|+|||||++|+-+|..|++.+              .+|+|+|+. ++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g--------------~~V~iiEk~~~iG   37 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLN--------------KKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGT--------------CCEEEECSSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCC--------------CcEEEEECCCCcc
Confidence            47999999999999999999876              899999987 543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.76  E-value=0.00058  Score=57.42  Aligned_cols=37  Identities=27%  Similarity=0.577  Sum_probs=29.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|+|||||++|+-+|..|++...+         +.+.+|+|||+.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~---------~~G~~v~vlEr~   44 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQ---------KPDLKVRIIDKR   44 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHH---------STTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccc---------cCCCcEEEEcCC
Confidence            4799999999999999999864311         123899999986

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.63  E-value=0.0011  Score=48.78  Aligned_cols=85  Identities=13%  Similarity=0.133  Sum_probs=56.7

Q ss_pred             CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CCCCCCCHHHHHHHHHHHHhCCCEEEeC---ceEEEeCC
Q 023375           23 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSSFDDRLRHYATTQLSKSGVRLVRG---IVKDVDSQ   96 (283)
Q Consensus        23 G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~l~~~~~~~~~~~~~~l~~~gV~v~~~---~V~~v~~~   96 (283)
                      +++-.|.|..+.++.++    +  +++  .+|.++...   ...+.+.+...+.+.+.++++||+++.+   ++.+++..
T Consensus        48 pgAP~e~a~l~~~~lr~----~--g~r--~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~  119 (141)
T d1fcda2          48 PPGPYERASQVAYYLKA----H--KPM--SKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGG  119 (141)
T ss_dssp             TTHHHHHHHHHHHHHGG----G--CSC--CCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEET
T ss_pred             CchHHHHHHHHHHHHHH----c--CCC--CcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCC
Confidence            46667888888776532    1  222  455555443   2223333455666777778899999986   47777643


Q ss_pred             --eEEEcCCcEEEeeEEEEcC
Q 023375           97 --KLILNDGTEVPYGLLVWST  115 (283)
Q Consensus        97 --~v~~~~g~~i~~d~vi~a~  115 (283)
                        .+++.+|+++++|++++.+
T Consensus       120 ~~~~~~~~Ge~v~yD~l~vvP  140 (141)
T d1fcda2         120 EMMVETAFGDEFKADVINLIP  140 (141)
T ss_dssp             TTEEEETTCCEEECSEEEECC
T ss_pred             cEEEEeCCCcEEeeeEEEeCC
Confidence              6888999999999998865

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.35  E-value=0.0014  Score=55.41  Aligned_cols=31  Identities=29%  Similarity=0.565  Sum_probs=29.2

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|||+|+.|+-+|.+|++.+              .+|.++|++
T Consensus         6 DviIVGsG~aG~v~A~~La~~G--------------~kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAG--------------YKVAMFDIG   36 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhhCC--------------CeEEEEecC
Confidence            6999999999999999999976              999999986

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0016  Score=48.31  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=30.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      +.++++|||||..|.+-|..|.+.+              .+|++|.+
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~G--------------A~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTG--------------CKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGT--------------CEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeC
Confidence            5689999999999999999999988              99999965

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.23  E-value=0.0092  Score=41.72  Aligned_cols=74  Identities=20%  Similarity=0.193  Sum_probs=50.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++|+|||||.+|..-|..|.+.+              .+|+++...     ..+++    .+...+.+++++..... 
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~g--------------a~v~v~~~~-----~~~~~----~~~~~~~~i~~~~~~~~-   66 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAG--------------ARLTVNALT-----FIPQF----TVWANEGMLTLVEGPFD-   66 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTT--------------BEEEEEESS-----CCHHH----HHHHTTTSCEEEESSCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecc-----CChHH----HHHHhcCCceeeccCCC-
Confidence            4579999999999999999999987              999999653     23333    33445567777764221 


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                               +..-..++.++.+++...
T Consensus        67 ---------~~dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1          67 ---------ETLLDSCWLAIAATDDDT   84 (113)
T ss_dssp             ---------GGGGTTCSEEEECCSCHH
T ss_pred             ---------HHHhCCCcEEeecCCCHH
Confidence                     111123778888887543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=96.19  E-value=0.0018  Score=55.01  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|||||+|+.|.-+|..|++.+              .+|.++|++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG--------------~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAG--------------VQTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCc--------------CeEEEEecC
Confidence            5899999999999999999877              899999986

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.15  E-value=0.0025  Score=48.04  Aligned_cols=33  Identities=21%  Similarity=0.133  Sum_probs=30.3

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|+|+|||+|.+|..+|..|.+.+              .+|++++++
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g--------------~~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSG--------------IKVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTT--------------CEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEECC
Confidence            479999999999999999999876              899999886

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.09  E-value=0.002  Score=54.77  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -.|||||+|++|+-+|..|++.+              .+|+++|++
T Consensus         8 ~dvIVVGsG~aG~v~A~rLaeaG--------------~~VlvLEaG   39 (370)
T d3coxa1           8 VPALVIGSGYGGAVAALRLTQAG--------------IPTQIVEMG   39 (370)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            57999999999999999999877              899999985

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.96  E-value=0.00068  Score=53.80  Aligned_cols=23  Identities=22%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhh
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFI   37 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~   37 (283)
                      ++|+|||||.+|+.+|.+|++.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G   23 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERY   23 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCC
Confidence            47999999999999999999987

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0038  Score=42.22  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=49.3

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++|+|+|.|-+|..+|..|.+.+              .+|++.+.....+..         +.+ +.++.++.+..  
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g--------------~~v~~~D~~~~~~~~---------~~~-~~~~~~~~~~~--   57 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARG--------------VTPRVMDTRMTPPGL---------DKL-PEAVERHTGSL--   57 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESSSSCTTG---------GGS-CTTSCEEESBC--
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCC--------------CEEEEeeCCcCchhH---------HHH-hhccceeeccc--
Confidence            4679999999999999999999987              899999985321111         111 12444443311  


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                         +     ....-.+|.+|+++|..++
T Consensus        58 ---~-----~~~~~~~d~vi~SPGi~~~   77 (93)
T d2jfga1          58 ---N-----DEWLMAADLIVASPGIALA   77 (93)
T ss_dssp             ---C-----HHHHHHCSEEEECTTSCTT
T ss_pred             ---c-----hhhhccCCEEEECCCCCCC
Confidence               0     0011257999999999876

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.80  E-value=0.0046  Score=46.85  Aligned_cols=79  Identities=14%  Similarity=0.107  Sum_probs=49.5

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV   93 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v   93 (283)
                      ++|+|||+|..|..+|..|++.+              ++|+++++..       +   .+ +.+.+.+...... .....
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G--------------~~V~~~~r~~-------~---~~-~~~~~~~~~~~~~~~~~~~   56 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKG--------------QSVLAWDIDA-------Q---RI-KEIQDRGAIIAEGPGLAGT   56 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSCH-------H---HH-HHHHHHTSEEEESSSCCEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCC--------------CEEEEEECCH-------H---HH-HHHHHcCCCchhhhhhhhh
Confidence            68999999999999999999987              9999997642       1   11 2233444333332 33333


Q ss_pred             eCCeEEEcCCcE--EEeeEEEEcCCCC
Q 023375           94 DSQKLILNDGTE--VPYGLLVWSTGVG  118 (283)
Q Consensus        94 ~~~~v~~~~g~~--i~~d~vi~a~G~~  118 (283)
                      ......+.+-.+  -.+|.+|+|+...
T Consensus        57 ~~~~~~~~~~~e~~~~aD~iii~v~~~   83 (184)
T d1bg6a2          57 AHPDLLTSDIGLAVKDADVILIVVPAI   83 (184)
T ss_dssp             ECCSEEESCHHHHHTTCSEEEECSCGG
T ss_pred             hhhhhhhhhhHhHhcCCCEEEEEEchh
Confidence            233233333211  2489999988643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0035  Score=48.56  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -++|+|||+|..|..+|..++..+              .+|++++.+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G--------------~~V~l~D~~   36 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATG--------------HTVVLVDQT   36 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence            379999999999999999999887              999999886

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.47  E-value=0.0087  Score=43.00  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=29.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|+|+|..|..+|..|.+.+              .+|++++.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g--------------~~v~vid~d   32 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKG--------------HDIVLIDID   32 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--------------CCcceecCC
Confidence            47999999999999999999877              899999774

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=95.43  E-value=0.0053  Score=52.15  Aligned_cols=31  Identities=32%  Similarity=0.527  Sum_probs=28.4

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|||+|++|+-+|..|++.+              .+|.|+|++
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g--------------~~VlvLEaG   34 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAG--------------KKVLLLERG   34 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHhhCC--------------CeEEEEEcc
Confidence            6899999999999999999876              899999986

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.42  E-value=0.0059  Score=43.95  Aligned_cols=76  Identities=16%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD   94 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~   94 (283)
                      |+++|+|.|..|..+|..|.+.+              .+|++++.++       +.    .+.+.+.+..++.+..+  +
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g--------------~~vvvid~d~-------~~----~~~~~~~~~~~~~gd~~--~   53 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMG--------------HEVLAVDINE-------EK----VNAYASYATHAVIANAT--E   53 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESCH-------HH----HHHTTTTCSEEEECCTT--C
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--------------CeEEEecCcH-------HH----HHHHHHhCCcceeeecc--c
Confidence            57999999999999999999887              8999997652       21    22345667666544110  1


Q ss_pred             CCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           95 SQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        95 ~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ++.  +..-.--.+|.+|.+++...
T Consensus        54 ~~~--l~~a~i~~a~~vi~~~~~~~   76 (134)
T d2hmva1          54 ENE--LLSLGIRNFEYVIVAIGANI   76 (134)
T ss_dssp             TTH--HHHHTGGGCSEEEECCCSCH
T ss_pred             chh--hhccCCccccEEEEEcCchH
Confidence            111  10000124788888887643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.39  E-value=0.0029  Score=48.72  Aligned_cols=35  Identities=14%  Similarity=0.169  Sum_probs=31.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++-++|+|||+|..|..+|..++..+              .+|++++.+
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G--------------~~V~l~D~~   36 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKG--------------TPILMKDIN   36 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            35679999999999999999999887              999999876

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.22  E-value=0.0004  Score=55.62  Aligned_cols=37  Identities=11%  Similarity=0.066  Sum_probs=32.0

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL   63 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l   63 (283)
                      ..++++|||||++|+|+|.+|++.+              .+|+++++. .++
T Consensus       179 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~r~~~~~  216 (233)
T d1djqa3         179 AEAPRLIADATFTGHRVAREIEEAN--------------PQIAIPYKRETIA  216 (233)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTTSSC--------------TTSCCCCCCCCCC
T ss_pred             cCCceeEecCchHHHHHHHHHHhcC--------------CceEEEEeccccc
Confidence            4578999999999999999999887              789999986 443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.01  Score=44.09  Aligned_cols=32  Identities=19%  Similarity=0.083  Sum_probs=29.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .||+|||+|..|.-+|..|++.+              .+|+++.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G--------------~~V~~~~r~   32 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG--------------HEVQGWLRV   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--------------CceEEEEcC
Confidence            47999999999999999999987              999999876

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=94.91  E-value=0.0089  Score=51.32  Aligned_cols=34  Identities=29%  Similarity=0.523  Sum_probs=29.5

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .-.+||||||.+|+-+|..|++.+.             .+|.|||++
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~-------------~~VLlLEaG   57 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPK-------------IKVLVIEKG   57 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTT-------------CCEEEEESS
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCC-------------CeEEEEcCC
Confidence            3689999999999999999997541             689999987

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=94.56  E-value=0.018  Score=49.10  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=30.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI   62 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~   62 (283)
                      -.++|||||.+|+-+|..|++..             +.+|.|+|++..
T Consensus        18 yD~IIVGsG~aG~vlA~rLse~~-------------~~~VLvLEaG~~   52 (385)
T d1cf3a1          18 VDYIIAGGGLTGLTTAARLTENP-------------NISVLVIESGSY   52 (385)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTST-------------TCCEEEEESSCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHCC-------------CCeEEEECCCCC
Confidence            58999999999999999998753             279999999843

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=94.28  E-value=0.012  Score=49.64  Aligned_cols=31  Identities=32%  Similarity=0.609  Sum_probs=27.4

Q ss_pred             eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      .+||||+|++|+-+|..|++.               .+|.|||++.
T Consensus        28 D~IIVGsG~aG~vlA~rLae~---------------~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK---------------YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT---------------SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC---------------CCEEEEecCC
Confidence            789999999999999999852               6899999974

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.063  Score=39.20  Aligned_cols=80  Identities=15%  Similarity=0.077  Sum_probs=50.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD   94 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~   94 (283)
                      -+++|+|.|..|..++..|.+.+              .+|++++..+      +. .....+.+...|+.++.+..++  
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~--------------~~v~vId~d~------~~-~~~~~~~~~~~~~~vi~Gd~~d--   60 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRG--------------QNVTVISNLP------ED-DIKQLEQRLGDNADVIPGDSND--   60 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCC------HH-HHHHHHHHHCTTCEEEESCTTS--
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC--------------CCEEEEeccc------hh-HHHHHHHhhcCCcEEEEccCcc--
Confidence            48999999999999999999876              8899996532      22 2223334556788888762110  


Q ss_pred             CCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375           95 SQKLILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        95 ~~~v~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ++  .++.-.--.+|.+|.+++...
T Consensus        61 ~~--~L~~a~i~~a~~vi~~~~~d~   83 (153)
T d1id1a_          61 SS--VLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             HH--HHHHHTTTTCSEEEECSSCHH
T ss_pred             hH--HHHHhccccCCEEEEccccHH
Confidence            00  000000113888888887543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.025  Score=45.13  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=34.0

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +++-+..+|+|||.|-.|.++|..|+..+-             .+++|++..
T Consensus        25 Q~kL~~~~VliiG~GglGs~va~~La~~Gv-------------g~i~lvD~D   63 (247)
T d1jw9b_          25 QEALKDSRVLIVGLGGLGCAASQYLASAGV-------------GNLTLLDFD   63 (247)
T ss_dssp             HHHHHHCEEEEECCSHHHHHHHHHHHHHTC-------------SEEEEECCC
T ss_pred             HHHHhCCCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCc
Confidence            456677899999999999999999999883             699999875

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.94  E-value=0.065  Score=41.18  Aligned_cols=75  Identities=12%  Similarity=0.056  Sum_probs=50.9

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C--------CCCCCCHHHHHHHHHHHHhCCCEE
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E--------ILSSFDDRLRHYATTQLSKSGVRL   85 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~--------~l~~~~~~~~~~~~~~l~~~gV~v   85 (283)
                      ++|.|||.|..|.-+|..|++.+              .+|+.++.+ +        ..|...+.+.+.+.+.........
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g--------------~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~   66 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARG--------------HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG   66 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCC--------------CcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccccccc
Confidence            47999999999999999999987              899999875 2        234445555555555444443333


Q ss_pred             EeCceEEEeCCeEEEcCCcE--EEeeEEEEcCCC
Q 023375           86 VRGIVKDVDSQKLILNDGTE--VPYGLLVWSTGV  117 (283)
Q Consensus        86 ~~~~V~~v~~~~v~~~~g~~--i~~d~vi~a~G~  117 (283)
                      ..+              -++  -.+|.+++|.+.
T Consensus        67 ~~~--------------~~~~i~~~d~i~i~VpT   86 (202)
T d1mv8a2          67 TTD--------------FKKAVLDSDVSFICVGT   86 (202)
T ss_dssp             ESC--------------HHHHHHTCSEEEECCCC
T ss_pred             CCC--------------HHHHHhhCCEEEEecCc
Confidence            322              111  247888888875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.76  E-value=0.048  Score=41.98  Aligned_cols=48  Identities=10%  Similarity=0.009  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeC-ceEEEe--CC--eE--EEcCCcEEEeeEEEEcCC
Q 023375           69 RLRHYATTQLSKSGVRLVRG-IVKDVD--SQ--KL--ILNDGTEVPYGLLVWSTG  116 (283)
Q Consensus        69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~--~v--~~~~g~~i~~d~vi~a~G  116 (283)
                      .+.+.+.+.+++.|++++++ +|++|.  .+  .+  ++.+|+++.||.||..+.
T Consensus       237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s  291 (297)
T d2bcgg1         237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPT  291 (297)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGG
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChh
Confidence            46677888899999999999 899883  32  23  457899999999987543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.61  E-value=0.081  Score=42.57  Aligned_cols=59  Identities=15%  Similarity=0.222  Sum_probs=42.3

Q ss_pred             ccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375           13 RLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        13 ~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      +.++|+|.|| |++|-+++.+|.+.+              .+|+++.++....  ... .......+...+++++..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G--------------~~V~~~~R~~~~~--~~~-~~~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG--------------HPTYVLFRPEVVS--NID-KVQMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--------------CCEEEECCSCCSS--CHH-HHHHHHHHHTTTCEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC--------------CEEEEEECCCccc--chh-HHHHHhhhccCCcEEEEe
Confidence            4467999996 999999999999877              8999998763221  122 223345567788888754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.073  Score=37.34  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=27.0

Q ss_pred             cCeEEEEccCc-----------HHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGP-----------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~-----------~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|+|+||           ++++++.+|.+.+              .+++++..+
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g--------------~~~IliN~N   47 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG--------------YETIMVNCN   47 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT--------------CEEEEECCC
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC--------------CeEEEEecC
Confidence            46899999985           6777888888776              899999875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.07  E-value=0.066  Score=39.96  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=30.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++.+|+|+|+|.+|.+.+.....++              .+|++++.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG--------------A~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG--------------AQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC--------------CEEEEEeCc
Confidence            4579999999999999999999998              999999764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.64  E-value=0.031  Score=42.78  Aligned_cols=34  Identities=29%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|+|||+|.-|..+|..|++.+              .+|++..++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g--------------~~V~l~~r~   39 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKC--------------REVCVWHMN   39 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTE--------------EEEEEECSC
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEec
Confidence            4568999999999999999999876              899999653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.073  Score=34.35  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      ++|.|+|||..|-.++.+-..++              .++.++++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG--------------~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLG--------------IAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGT--------------EEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcC--------------CEEEEEcCCC
Confidence            68999999999999999999998              9999998763

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.04  E-value=0.069  Score=39.60  Aligned_cols=46  Identities=17%  Similarity=0.137  Sum_probs=34.8

Q ss_pred             CCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375            3 LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus         3 ~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .|..+++......+|.|||+|..|..+|..|...+-.            -++.|++..
T Consensus         9 ~~~~~~~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~------------~ElvLiD~~   54 (160)
T d1i0za1           9 APVAEEEATVPNNKITVVGVGQVGMACAISILGKSLA------------DELALVDVL   54 (160)
T ss_dssp             CCSSCSCCCCCSSEEEEECCSHHHHHHHHHHHHTTCC------------SEEEEECSC
T ss_pred             cCcCcccccCCCCeEEEECCCHHHHHHHHHHHhcCCC------------cEEEEEEec
Confidence            3455555555567999999999999999999876521            579999664

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.00  E-value=0.093  Score=38.55  Aligned_cols=36  Identities=17%  Similarity=0.110  Sum_probs=28.6

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++..+|+|||+|..|..+|..|+...             -.++.|++..
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~-------------~~el~L~D~~   40 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRE-------------LADVVLYDVV   40 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHT-------------CCEEEEECSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCC-------------CceEEEEEec
Confidence            45679999999999999998777543             1589999765

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=91.95  E-value=0.088  Score=38.35  Aligned_cols=35  Identities=14%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .++|+|||+|..|..+|..|+..+-.            .++.|++..
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~------------~elvL~D~~   39 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIA------------EEFVIVDVV   39 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCC------------SEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCC------------cEEEEeecc
Confidence            46899999999999999999876521            589999764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.88  E-value=0.23  Score=39.39  Aligned_cols=59  Identities=19%  Similarity=0.186  Sum_probs=41.4

Q ss_pred             cCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375           14 LLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG   88 (283)
Q Consensus        14 ~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~   88 (283)
                      .+||+|.|| |++|-.++.+|.+.+              .+|+.+.++...... ... ....+.+...+++++.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G--------------~~V~~l~R~~~~~~~-~~~-~~~~~~~~~~~~~~~~~   62 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLG--------------HPTFLLVRESTASSN-SEK-AQLLESFKASGANIVHG   62 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT--------------CCEEEECCCCCTTTT-HHH-HHHHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--------------CeEEEEECCCccccc-hhH-HHHHHhhccCCcEEEEe
Confidence            478999996 999999999999876              899999886322211 221 22344566678887653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.071  Score=46.07  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375           11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE   61 (283)
Q Consensus        11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~   61 (283)
                      +-+..+|+|||+|-.|.|+|..|+..+-             .+++|++...
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gv-------------g~i~lvD~D~   71 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGF-------------RQIHVIDMDT   71 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTC-------------CCEEEECCCB
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEECCC
Confidence            3456799999999999999999998772             5899998753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.68  E-value=0.086  Score=39.71  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=27.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      .+|.|||+|.-|..+|..|++.+              .+|++..+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g--------------~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG--------------NEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC--------------CEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEEe
Confidence            47999999999999999999876              89999855

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.39  E-value=0.13  Score=38.90  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=30.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++-+|+|+|+|..|...|.....++              .+|++++.+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lG--------------A~V~v~D~~   61 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLG--------------AVVMATDVR   61 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcC--------------CEEEEEecc
Confidence            3569999999999999999999988              999999865

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.38  E-value=0.29  Score=40.31  Aligned_cols=106  Identities=17%  Similarity=0.203  Sum_probs=61.2

Q ss_pred             hCCCEEEeC-ceEEEeCC-------eEEE---cCCc--EEEeeEEEEcCCCCCch-hhhccCCC----------------
Q 023375           80 KSGVRLVRG-IVKDVDSQ-------KLIL---NDGT--EVPYGLLVWSTGVGPST-LVKSLDLP----------------  129 (283)
Q Consensus        80 ~~gV~v~~~-~V~~v~~~-------~v~~---~~g~--~i~~d~vi~a~G~~~~~-~~~~~~l~----------------  129 (283)
                      +.|++++++ .|++|.-+       +|++   .+|+  ++.++.||+++|....+ ++..+++.                
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~  309 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS  309 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTT
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccccc
Confidence            346888888 78887431       3444   3454  57899999999975442 22222111                


Q ss_pred             -----C--CCC-CccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375          130 -----K--SPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG  190 (283)
Q Consensus       130 -----~--~~~-g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~  190 (283)
                           +  ++. ..=.||..+++-+.+|+|+ +|+..++...+  ..|...  ...-|..+|+.|....
T Consensus       310 ~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv-~d~sv~p~~~~--~nPt~t--~~alA~r~a~~i~~~~  373 (379)
T d2f5va1         310 LGSHRMGFDEKEDNCCVNTDSRVFGFKNLFL-GGCGNIPTAYG--ANPTLT--AMSLAIKSCEYIKQNF  373 (379)
T ss_dssp             TTBTCBCSCTTTTTCSBCTTCBBTTCSSEEE-CSGGGCCSCCC--SCSHHH--HHHHHHHHHHHHHHHC
T ss_pred             cceeecccCCCCCCccCCCCCcccccCCEEE-eCCcccCCccc--cCcHHH--HHHHHHHHHHHHHHhh
Confidence                 0  010 0136899999989999996 55555544322  234333  3333556667766544

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.14  Score=38.01  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=29.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|+|+|-++-.++..|.+.+              .+|+++.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g--------------~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLD--------------CAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccc--------------eEEEeccch
Confidence            4579999999999999999999876              789999664

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.69  E-value=0.14  Score=37.26  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=27.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|+|||+|..|..+|..|...+-            -.++.|++..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~------------~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV------------ADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC------------CSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC------------CceEEEEecc
Confidence            689999999999999999986541            1588999754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.16  Score=35.08  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|.|+|||..|..+|.+..+++              .++.+++++
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG--------------~~v~v~d~~   43 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLG--------------VEVIAVDRY   43 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTT--------------CEEEEEESS
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCC--------------CEEEEEcCC
Confidence            3458999999999999999999888              999999986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.62  E-value=0.15  Score=37.48  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=28.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||.|..|..+|..|.+.+              .+|+.++++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g--------------~~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRG--------------HYLIGVSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            37999999999999999998877              899998664

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.07  E-value=0.16  Score=36.97  Aligned_cols=37  Identities=27%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ....+|.|||+|..|..+|..|...+-            -.++.|++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l------------~~el~L~Di~   40 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGI------------ADEIVLIDAN   40 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTC------------CSEEEEECSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCC------------CceEEEEeec
Confidence            345689999999999999999987541            1579999754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.90  E-value=0.58  Score=31.09  Aligned_cols=73  Identities=15%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             cccCeEEEEccCcHHHHH-HHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375           12 SRLLHCVVVGGGPTGVEF-SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-I   89 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~-A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~   89 (283)
                      ++.+++-+||-|-+|+.. |..|.+.+              .+|+--+...     .+     ..+.|.+.|+++..+ .
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G--------------~~VsGSD~~~-----~~-----~~~~L~~~Gi~v~~g~~   61 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEG--------------YQISGSDIAD-----GV-----VTQRLAQAGAKIYIGHA   61 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHT--------------CEEEEEESCC-----SH-----HHHHHHHTTCEEEESCC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCC--------------CEEEEEeCCC-----Ch-----hhhHHHHCCCeEEECCc
Confidence            355799999988888776 88888887              8999887642     12     224567789999876 3


Q ss_pred             eEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           90 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        90 V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      -..+.            .+|+||.+++...+
T Consensus        62 ~~~i~------------~~d~vV~S~AI~~~   80 (96)
T d1p3da1          62 EEHIE------------GASVVVVSSAIKDD   80 (96)
T ss_dssp             GGGGT------------TCSEEEECTTSCTT
T ss_pred             cccCC------------CCCEEEECCCcCCC
Confidence            22121            25889998887654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.79  E-value=0.18  Score=37.42  Aligned_cols=32  Identities=13%  Similarity=0.224  Sum_probs=28.1

Q ss_pred             CeEEEE-ccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVV-GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVv-GgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|| |+|..|..+|..|++.+              .+|++..++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G--------------~~V~l~~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLG--------------HEIVVGSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT--------------CEEEEEESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            378999 56999999999999988              999999774

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.70  E-value=0.2  Score=35.40  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=28.8

Q ss_pred             cccCeEEEEccCc-----------HHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGP-----------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~-----------~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...++|+|+|+||           ++++++.+|.+.+              .++.++..+
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g--------------~~~iliN~N   50 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEG--------------YRVINVNSN   50 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT--------------CEEEEECSC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC--------------CeEEEecCc
Confidence            4568999999986           5778888888877              899999876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.25  E-value=0.18  Score=36.49  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=30.1

Q ss_pred             ccCeEEEEc-cCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvG-gG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|.||| .|..|-.+|..|.+.+              .+|+++++.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G--------------~~V~~~d~~   42 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASG--------------YPISILDRE   42 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTT--------------CCEEEECTT
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcC--------------CCcEecccc
Confidence            457999999 6999999999999877              899999875

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.98  E-value=0.92  Score=32.44  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             ccCeEEEEcc-CcHHHHHHHHHHHh
Q 023375           13 RLLHCVVVGG-GPTGVEFSGELSDF   36 (283)
Q Consensus        13 ~~~~vvVvGg-G~~Gve~A~~L~~~   36 (283)
                      ++.+|+|||+ |++|.|+...|.++
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~   25 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDER   25 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhc
Confidence            3579999996 99999999999753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=0.3  Score=37.00  Aligned_cols=74  Identities=16%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             cCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeCceE
Q 023375           14 LLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVK   91 (283)
Q Consensus        14 ~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~   91 (283)
                      .++|+|+|| |.+|-.++.+|.+.+              .+|+++.++ .-++..            ...+++++.+.+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g--------------~~V~~~~R~~~~~~~~------------~~~~~~~~~gD~~   56 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAG--------------YEVTVLVRDSSRLPSE------------GPRPAHVVVGDVL   56 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT--------------CEEEEEESCGGGSCSS------------SCCCSEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCc--------------CEEEEEEcChhhcccc------------ccccccccccccc
Confidence            578999995 999999999999876              899999886 333322            2246666654221


Q ss_pred             EEeCCeEE--EcCCcEEEeeEEEEcCCCCCc
Q 023375           92 DVDSQKLI--LNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        92 ~v~~~~v~--~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +.+  .+.  +.     .+|.||.+.|..+.
T Consensus        57 d~~--~l~~al~-----~~d~vi~~~g~~~~   80 (205)
T d1hdoa_          57 QAA--DVDKTVA-----GQDAVIVLLGTRND   80 (205)
T ss_dssp             SHH--HHHHHHT-----TCSEEEECCCCTTC
T ss_pred             chh--hHHHHhc-----CCCEEEEEeccCCc
Confidence            110  000  11     26899999997543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.10  E-value=0.29  Score=35.87  Aligned_cols=71  Identities=20%  Similarity=0.132  Sum_probs=46.5

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEe-CceE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR-GIVK   91 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~-~~V~   91 (283)
                      +.++|+|||+|.+|-.+|..|...+.             .++++..+.          .+.+.+...+.|.+... +.+.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~-------------~~i~v~nRt----------~~ka~~l~~~~~~~~~~~~~~~   79 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGV-------------RAVLVANRT----------YERAVELARDLGGEAVRFDELV   79 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCC-------------SEEEEECSS----------HHHHHHHHHHHTCEECCGGGHH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCC-------------cEEEEEcCc----------HHHHHHHHHhhhcccccchhHH
Confidence            56899999999999999999998751             478888664          12233444444554431 1110


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEEcCCC
Q 023375           92 DVDSQKLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        92 ~v~~~~v~~~~g~~i~~d~vi~a~G~  117 (283)
                                 ..--.+|.||.||+.
T Consensus        80 -----------~~l~~~Divi~atss   94 (159)
T d1gpja2          80 -----------DHLARSDVVVSATAA   94 (159)
T ss_dssp             -----------HHHHTCSEEEECCSS
T ss_pred             -----------HHhccCCEEEEecCC
Confidence                       001259999999985

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.09  E-value=0.34  Score=35.50  Aligned_cols=35  Identities=17%  Similarity=0.185  Sum_probs=28.1

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +...+|+|+|+|++|+-++..+..++              .+|+.++.+
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~G--------------a~vi~v~~~   59 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYG--------------AFVVCTARS   59 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhc--------------ccccccchH
Confidence            34568999999999998887776665              889999764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=87.90  E-value=0.29  Score=35.25  Aligned_cols=35  Identities=14%  Similarity=0.178  Sum_probs=27.9

Q ss_pred             cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.+|+|||+|..|..+|..|...+-.            .++.|++..
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~------------~ElvL~D~~   35 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIA------------REIVLEDIA   35 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC------------SEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCC------------cEEEEEEec
Confidence            35899999999999999999865421            589999653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.83  E-value=0.8  Score=29.93  Aligned_cols=70  Identities=17%  Similarity=0.099  Sum_probs=48.8

Q ss_pred             CeEEEEccCcHHH-HHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 023375           15 LHCVVVGGGPTGV-EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD   92 (283)
Q Consensus        15 ~~vvVvGgG~~Gv-e~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~   92 (283)
                      ++|-+||=|-+|+ -+|..|.+.+              .+|+--+...     .+     ..+.|++.||++..+ ....
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G--------------~~VsGSD~~~-----~~-----~t~~L~~~Gi~i~~gh~~~~   57 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNG--------------NDVYGSNIEE-----TE-----RTAYLRKLGIPIFVPHSADN   57 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEECSSC-----CH-----HHHHHHHTTCCEESSCCTTS
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCC--------------CeEEEEeCCC-----Ch-----hHHHHHHCCCeEEeeecccc
Confidence            5788999888888 4567777776              8888876532     12     234589999999876 3221


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVGPS  120 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~  120 (283)
                      +            -.+|+||++++...+
T Consensus        58 i------------~~~d~vV~SsAI~~~   73 (89)
T d1j6ua1          58 W------------YDPDLVIKTPAVRDD   73 (89)
T ss_dssp             C------------CCCSEEEECTTCCTT
T ss_pred             c------------CCCCEEEEecCcCCC
Confidence            1            137899999988765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.73  E-value=0.29  Score=35.92  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=27.8

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||.|..|..+|..|.+.+.            ..+|+.++++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~------------~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGF------------KGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC------------CSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCC------------CeEEEEEECC
Confidence            579999999999999999987652            1678888653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=87.71  E-value=0.29  Score=35.19  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=27.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||+|..|..+|..|+...             -.++.+++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~-------------l~dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKE-------------LGDIVLLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-------------cceEEEEeec
Confidence            48999999999999999887543             1588999764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=87.68  E-value=0.29  Score=35.09  Aligned_cols=34  Identities=18%  Similarity=0.322  Sum_probs=27.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||+|..|..+|..|+..+-            -.++.|++..
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l------------~~el~L~Di~   34 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQL------------ARELVLLDVV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC------------CSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC------------CceEEEeccc
Confidence            479999999999999998886541            1589999865

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=87.38  E-value=0.27  Score=40.47  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=29.4

Q ss_pred             ccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.|+|+|+|| |++|-.++..|.+.+              .+|+++.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G--------------~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVG--------------HHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTT--------------CCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence            5689999995 999999999999876              788888775

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=87.36  E-value=0.31  Score=35.03  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=28.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|+|||+|..|..+|..|....-            -.++.|++..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l------------~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT------------ANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC------------SSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC------------CCEEEEEecc
Confidence            489999999999999999987541            1589999865

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.30  E-value=0.4  Score=35.18  Aligned_cols=35  Identities=14%  Similarity=-0.045  Sum_probs=27.7

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +...+|+|+|+|++|.-++..+..++              .+|+.++.+
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G--------------~~vi~~~~~   60 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMG--------------AETYVISRS   60 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEEESS
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhcc--------------ccccccccc
Confidence            34579999999999997766665555              889988775

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.09  E-value=0.26  Score=37.24  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=26.4

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||.|+.|+-+|..++ .+              .+|+.++-+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g--------------~~V~g~Din   31 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQ--------------NEVTIVDIL   31 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TT--------------SEEEEECSC
T ss_pred             CEEEEECCChhHHHHHHHHH-CC--------------CcEEEEECC
Confidence            47999999999999998776 35              899999865

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=86.93  E-value=0.31  Score=35.99  Aligned_cols=35  Identities=11%  Similarity=0.165  Sum_probs=29.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|+|+|-++-.++..|.+.+.             .+|+++.++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~-------------~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGF-------------EKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTC-------------CCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-------------CEEEEeccc
Confidence            45799999999999999999988762             478998664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.91  E-value=0.44  Score=34.71  Aligned_cols=35  Identities=17%  Similarity=0.106  Sum_probs=27.5

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +...+|+|+|+|+.|.-++..+..++              .+|+.++.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G--------------~~Vi~~~~~   60 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMG--------------LHVAAIDID   60 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcC--------------Cccceecch
Confidence            45678999999999998777666655              888888654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=86.85  E-value=0.23  Score=34.85  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=43.2

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD   94 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~   94 (283)
                      ++|+|+|.|..|.+++.+|..                .+|.+++..+-       .    .+.+.+.|+.++.+..++  
T Consensus         1 kHivI~G~g~~g~~l~~~L~~----------------~~i~vi~~d~~-------~----~~~~~~~~~~~i~Gd~~~--   51 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRG----------------SEVFVLAEDEN-------V----RKKVLRSGANFVHGDPTR--   51 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCG----------------GGEEEEESCTT-------H----HHHHHHTTCEEEESCTTS--
T ss_pred             CEEEEECCCHHHHHHHHHHcC----------------CCCEEEEcchH-------H----HHHHHhcCccccccccCC--
Confidence            589999999999999999853                45677765421       1    133566788887652110  


Q ss_pred             CCeEEEcCCcEEEeeEEEEcCCC
Q 023375           95 SQKLILNDGTEVPYGLLVWSTGV  117 (283)
Q Consensus        95 ~~~v~~~~g~~i~~d~vi~a~G~  117 (283)
                      ++  .+..-..-.++.+|.++..
T Consensus        52 ~~--~L~~a~i~~A~~vi~~~~~   72 (129)
T d2fy8a1          52 VS--DLEKANVRGARAVIVNLES   72 (129)
T ss_dssp             HH--HHHHTTCTTCSEEEECCSS
T ss_pred             HH--HHHHhhhhcCcEEEEeccc
Confidence            00  0111111237778877754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.61  E-value=0.35  Score=34.77  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=27.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||+|..|..+|..|+..+-.            .++.|++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~------------~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDV------------DEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCC------------SEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcC------------ceEEEEecc
Confidence            4799999999999999988865411            579999754

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.59  E-value=0.37  Score=34.48  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=27.0

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||+|..|..+|..|....-            -.++.|++..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l------------~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGF------------AREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC------------CSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC------------CCEEEEEecc
Confidence            479999999999999988876541            1589999754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.45  E-value=0.48  Score=34.76  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=27.1

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ...+|+|+|+|+.|+-++..+..++.             .+|++++.+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~-------------~~Vi~~d~~   60 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGA-------------AQVVVTDLS   60 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-------------SEEEEEESC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCC-------------ceEEeccCC
Confidence            44689999999999987777776651             478888754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.24  E-value=0.33  Score=36.02  Aligned_cols=74  Identities=15%  Similarity=0.154  Sum_probs=45.7

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD   92 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~   92 (283)
                      +.++|+|+|+|-++-.++..|.+..              .+|+++.+..       +-.+.+.+.+...+      .+..
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~--------------~~i~I~nR~~-------~~a~~l~~~~~~~~------~~~~   69 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQ--------------QNIVLANRTF-------SKTKELAERFQPYG------NIQA   69 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTT--------------CEEEEEESSH-------HHHHHHHHHHGGGS------CEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccC--------------ceeeeccchH-------HHHHHHHHHHhhcc------ccch
Confidence            4579999999999999998888644              7899997752       22333344444322      1111


Q ss_pred             EeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375           93 VDSQKLILNDGTEVPYGLLVWSTGVG  118 (283)
Q Consensus        93 v~~~~v~~~~g~~i~~d~vi~a~G~~  118 (283)
                      +..+     +....++|.+|-||+..
T Consensus        70 ~~~~-----~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          70 VSMD-----SIPLQTYDLVINATSAG   90 (171)
T ss_dssp             EEGG-----GCCCSCCSEEEECCCC-
T ss_pred             hhhc-----cccccccceeeeccccc
Confidence            1111     11123589999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=86.19  E-value=0.51  Score=35.02  Aligned_cols=36  Identities=19%  Similarity=0.109  Sum_probs=27.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +...+|+|+|+|++|.-++..+..++.             .+|++++.+
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga-------------~~Vi~~~~~   62 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGA-------------ENVIVIAGS   62 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-------------SEEEEEESC
T ss_pred             CCCCEEEEECCCccchhheeccccccc-------------ccccccccc
Confidence            345799999999999977777766651             378888664

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.01  E-value=0.49  Score=35.54  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             ccCeEEEEc-cCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvG-gG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.|+++|.| +|-+|.++|..|++.+              .+|+++.++
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G--------------~~V~~~~r~   56 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEG--------------AEVVLCGRK   56 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhc--------------cchhhcccc
Confidence            568999999 6999999999999988              899999775

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=85.54  E-value=0.51  Score=35.16  Aligned_cols=35  Identities=11%  Similarity=0.127  Sum_probs=29.6

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|+|+|-+|-.++..|.+.+.             .+|+++.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~-------------~~i~i~nR~   51 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGL-------------KEIKLFNRR   51 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-------------SEEEEEECS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCC-------------ceEeeeccc
Confidence            44799999999999999999988762             689999875

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.52  E-value=0.27  Score=36.16  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=27.6

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||+|..|..+|..|...+-            -.++.|++..
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l------------~~elvL~D~~   53 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGL------------ADELALVDAD   53 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTS------------CSEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC------------CCEEEEEeCC
Confidence            579999999999999999987652            1579999654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.80  E-value=1.2  Score=35.12  Aligned_cols=87  Identities=21%  Similarity=0.167  Sum_probs=53.1

Q ss_pred             HcccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q 023375           11 KSRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI   89 (283)
Q Consensus        11 ~~~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~   89 (283)
                      |-+.|.++|.|| +-+|.++|..|++.+              .+|.+.+++       ++-.+.+.+.+++.|.+++.- 
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~G--------------a~V~~~~r~-------~~~l~~~~~~~~~~g~~~~~~-   59 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEG--------------TAIALLDMN-------REALEKAEASVREKGVEARSY-   59 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESC-------HHHHHHHHHHHHTTTSCEEEE-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCC--------------CEEEEEECC-------HHHHHHHHHHHHhcCCcEEEE-
Confidence            346678888885 568999999999988              999999764       344455667777777654321 


Q ss_pred             eEEEeCC-eE----EEcCCcEEEeeEEEEcCCCCC
Q 023375           90 VKDVDSQ-KL----ILNDGTEVPYGLLVWSTGVGP  119 (283)
Q Consensus        90 V~~v~~~-~v----~~~~g~~i~~d~vi~a~G~~~  119 (283)
                      ..++... .+    ...-.+.-.-|.+|..+|..+
T Consensus        60 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~~~   94 (260)
T d1zema1          60 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQG   94 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCeehhhhcccc
Confidence            0111110 00    000000114789999999754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.02  E-value=0.7  Score=33.94  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..|+++|+|-|..|-.+|..++.++              .+|++.|..
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G--------------~~V~v~e~d   56 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFG--------------ARVIITEID   56 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             cCCEEEEeccccccHHHHHHHHhCC--------------CeeEeeecc
Confidence            4579999999999999999999998              999999764

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.58  E-value=0.35  Score=42.71  Aligned_cols=61  Identities=23%  Similarity=0.223  Sum_probs=43.8

Q ss_pred             HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC----------C--CCCCHHHHHHHHH
Q 023375            9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----------L--SSFDDRLRHYATT   76 (283)
Q Consensus         9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~----------l--~~~~~~~~~~~~~   76 (283)
                      +++-+..+|+|||.|..|.|+|..|+..|-             .+++|++...+          +  ..++..-.+.+.+
T Consensus        20 Q~~L~~s~VlvvG~gglG~Ei~knLvl~GV-------------g~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~   86 (529)
T d1yova1          20 QEALESAHVCLINATATGTEILKNLVLPGI-------------GSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAME   86 (529)
T ss_dssp             HHHHHHCEEEECCCSHHHHHHHHHHHTTTC-------------SEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHH
T ss_pred             HHHHhCCCEEEECCCHHHHHHHHHHHHhcC-------------CEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHH
Confidence            345566899999999999999999998762             68999987532          1  1233445566667


Q ss_pred             HHHhCC
Q 023375           77 QLSKSG   82 (283)
Q Consensus        77 ~l~~~g   82 (283)
                      .|.+.+
T Consensus        87 ~L~~lN   92 (529)
T d1yova1          87 FLQELN   92 (529)
T ss_dssp             HHHTTC
T ss_pred             HHHHhC
Confidence            777764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=83.56  E-value=0.71  Score=34.48  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=31.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      -..++|.|||.|.+|-++|..+..++              .+|+.+++.
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g--------------~~v~~~d~~   74 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALG--------------AQVRGFSRT   74 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             ccCceEEEeccccccccceeeeeccc--------------ccccccccc
Confidence            35689999999999999999999888              899999875

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.48  E-value=2.5  Score=34.82  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=27.1

Q ss_pred             cCeEEEEc-cCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEe
Q 023375           14 LLHCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE   58 (283)
Q Consensus        14 ~~~vvVvG-gG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~   58 (283)
                      .++|+|.| +|+.|-+++.+|.+.+              .+|+.++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g--------------~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKN--------------YEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc--------------CEEEEEe
Confidence            36899998 5999999999999887              8999986

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.96  E-value=0.73  Score=33.49  Aligned_cols=32  Identities=13%  Similarity=0.153  Sum_probs=28.7

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ++|.|||-|..|..+|..|.+.+              .+|+++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g--------------~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAG--------------YLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCC--------------CeEEEEECc
Confidence            58999999999999999999877              899998654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.67  E-value=0.71  Score=37.65  Aligned_cols=34  Identities=21%  Similarity=0.004  Sum_probs=29.8

Q ss_pred             ccCeEEEEc-cCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvG-gG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|+|.| +|++|.+++..|.+.+              .+|..+.+.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g--------------~~V~~~~r~   41 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMG--------------ATVKGYSLT   41 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence            458999999 6999999999999887              889988875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.63  E-value=0.64  Score=33.43  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=27.0

Q ss_pred             CeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||+ |..|..+|..|+..+-.            .++.|++..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~------------~el~L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFM------------KDLVLIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTC------------CEEEEEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcc------------cccccccch
Confidence            47999995 99999999998865411            589999764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.39  E-value=0.83  Score=33.03  Aligned_cols=34  Identities=12%  Similarity=0.019  Sum_probs=26.3

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA   59 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~   59 (283)
                      +...+|+|.|+|++|.-++..+...+              .+|++++.
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g--------------~~v~~~~~   59 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMG--------------LNVVAVDI   59 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTT--------------CEEEEECS
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCC--------------CeEeccCC
Confidence            45579999999999997766666655              78888854

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.12  E-value=0.81  Score=33.17  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=28.3

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||-|..|..+|..|.+.+              .+|+++++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G--------------~~V~~~d~~   32 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAG--------------YSLVVSDRN   32 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence            36999999999999999999877              899998654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.08  E-value=0.62  Score=33.43  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=26.5

Q ss_pred             eEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           16 HCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        16 ~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +|+|||+ |..|..+|..|...+-.            .++.|++..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~------------~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLV------------SRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTC------------SEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCcc------------ceEEEEecc
Confidence            7999995 99999999999865421            578999754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=81.93  E-value=0.81  Score=34.66  Aligned_cols=34  Identities=26%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +.++|.|||-|.+|-++|..+..++              .+|..+++.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg--------------~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFG--------------AKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhc--------------ccccccCcc
Confidence            4689999999999999999999887              899888653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=81.70  E-value=1  Score=32.80  Aligned_cols=35  Identities=20%  Similarity=0.001  Sum_probs=26.2

Q ss_pred             cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      +...+|+|+|+|++|.-++..+..++              .++++++..
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~G--------------a~~i~~~~~   63 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMG--------------AHVVAFTTS   63 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred             CCCCEEEEeccchHHHHHHHHhhccc--------------ccchhhccc
Confidence            45578999999999987666555555              777777654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.62  E-value=0.91  Score=32.74  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=26.1

Q ss_pred             CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      .+|.|||+|..|..+|..|....             -.++.|++..
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~-------------l~el~L~Di~   36 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKN-------------LGDVVLFDIV   36 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-------------CCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-------------CCeEEEEecc
Confidence            58999999999999997666432             1579999864

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=81.34  E-value=0.87  Score=34.50  Aligned_cols=34  Identities=18%  Similarity=0.098  Sum_probs=30.4

Q ss_pred             ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375           13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN   60 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~   60 (283)
                      ..++|.|||-|.+|-++|..+..++              .+|..+++.
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg--------------~~v~~~d~~   77 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFG--------------AKVIAYDPY   77 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred             cceeeeeeecccccccccccccccc--------------eeeeccCCc
Confidence            4479999999999999999999887              999999874

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.91  E-value=0.17  Score=37.70  Aligned_cols=17  Identities=29%  Similarity=0.387  Sum_probs=13.2

Q ss_pred             ccCeEEEEccCcHHHHH
Q 023375           13 RLLHCVVVGGGPTGVEF   29 (283)
Q Consensus        13 ~~~~vvVvGgG~~Gve~   29 (283)
                      +..+|+|||||.+|...
T Consensus         2 k~~KI~iIGaGsv~~~~   18 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPG   18 (167)
T ss_dssp             CCEEEEEECTTSSSHHH
T ss_pred             CCceEEEECCChhhhHH
Confidence            45689999999887643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.47  E-value=2.3  Score=33.18  Aligned_cols=83  Identities=23%  Similarity=0.271  Sum_probs=49.6

Q ss_pred             CeEE-EEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC--ce
Q 023375           15 LHCV-VVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG--IV   90 (283)
Q Consensus        15 ~~vv-VvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~--~V   90 (283)
                      |+|+ |.|| +-+|.++|..|++.+              .+|.+..++       ++-.+.+.+.+++.|.+++.-  -+
T Consensus         1 KKValITGas~GIG~aia~~la~~G--------------a~V~~~~r~-------~~~l~~~~~~i~~~g~~~~~~~~Dv   59 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDG--------------FAVAIADYN-------DATAKAVASEINQAGGHAVAVKVDV   59 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESC-------HHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCC--------------CEEEEEECC-------HHHHHHHHHHHHhcCCcEEEEEeeC
Confidence            4664 4464 568999999999887              899998764       334455566677777654321  11


Q ss_pred             EEEeC-----CeEEEcCCcEEEeeEEEEcCCCCCch
Q 023375           91 KDVDS-----QKLILNDGTEVPYGLLVWSTGVGPST  121 (283)
Q Consensus        91 ~~v~~-----~~v~~~~g~~i~~d~vi~a~G~~~~~  121 (283)
                      ++-+.     +.+.-+-|   .-|.+|-++|..+..
T Consensus        60 ~~~~~v~~~~~~~~~~~g---~iDilVnnAG~~~~~   92 (255)
T d1gega_          60 SDRDQVFAAVEQARKTLG---GFDVIVNNAGVAPST   92 (255)
T ss_dssp             TSHHHHHHHHHHHHHHTT---CCCEEEECCCCCCCB
T ss_pred             CCHHHHHHHHHHHHHHhC---CccEEEecccccccC
Confidence            11000     00110112   488999999987653