Citrus Sinensis ID: 023378


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
MGCGHLFYSTLVTFSVALITYNIIISANAPLKQDFPNPSSSSISVDPVIEMPLERSRRHGAAANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQVG
cccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHccccccccccEEEEEcccccccccccccEEEccccccccccccccccHHHHHHHHHHccccccEEEEEcccEEEEcccccccccccEEEEEcccccccccHHHHHHHcccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccEEEEccccccHHHcccccEEEcccccccccccEEEccHHHHHHHHHcccccccEEEEEcccEEEEccccccccccccccEcEEEEcccccHHHHHHHccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEccc
MGCGHLFYSTLVTFSVALITYNIIisanaplkqdfpnpssssisvdpviemplersrrhGAAANKRLFHTAMtasdsvynTWQCRVMYYWFkkfqngpnsemggftrilhsgkpdkymdeiptfiaqplpagmdqgyivlNRPWAFVQWLEKADIkeeyilmaepdhiivkpipnlskdglgaafpffyiepkkYESVLRKyfpkdmgpitnidpignspvvvgrdslkkiaPVWMNVSLamkkdpetdkAFGWVLEMYAYAVASALNGVGNILYKDFMIQVG
MGCGHLFYSTLVTFSVALITYNIIISANAPLKQDFPNPSSSSISVDPVIEMPLERSRRHGAAANKRLFHtamtasdsvyNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPitnidpignspvVVGRDSLKKIAPVWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQVG
MGCGHLFYSTLVTFSVALITYNIIISANAPLKQDFPNPssssisVDPVIEMPLERSRRHGAAANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQVG
**CGHLFYSTLVTFSVALITYNIIISANA************************************RLFHTAMTASDSVYNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQ**
****HLFYSTLVTFSVALITYNIIIS******************************************HTAMTASDSVYNTWQCRVMYYWFK**************RILHSGKPDKYMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQVG
MGCGHLFYSTLVTFSVALITYNIIISANAPLKQDFPNPSSSSISVDPVIEMPLERSRRHGAAANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQVG
*GCGHLFYSTLVTFSVALITYNIIISANAPLK*********SISVDPVIEMPLERS*****AANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQVG
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGCGHLFYSTLVTFSVALITYNIIISANAPLKQDFPNPSSSSISVDPVIEMPLERSRRHGAAANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
224141933362 predicted protein [Populus trichocarpa] 0.989 0.773 0.858 1e-142
449441888361 PREDICTED: uncharacterized protein LOC10 0.982 0.770 0.855 1e-141
255557757359 conserved hypothetical protein [Ricinus 0.978 0.771 0.840 1e-139
224089306359 predicted protein [Populus trichocarpa] 0.978 0.771 0.843 1e-138
388516027360 unknown [Lotus japonicus] 0.978 0.769 0.816 1e-135
225430416364 PREDICTED: uncharacterized protein LOC10 0.989 0.769 0.816 1e-135
359806029365 uncharacterized protein LOC100783788 [Gl 0.992 0.769 0.816 1e-133
388500814360 unknown [Medicago truncatula] 0.978 0.769 0.792 1e-132
356552496363 PREDICTED: uncharacterized protein LOC10 0.989 0.771 0.823 1e-131
22327055366 uncharacterized protein [Arabidopsis tha 0.992 0.767 0.803 1e-127
>gi|224141933|ref|XP_002324315.1| predicted protein [Populus trichocarpa] gi|222865749|gb|EEF02880.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/282 (85%), Positives = 265/282 (93%), Gaps = 2/282 (0%)

Query: 1   MGCGHLFYSTLVTFSVALITYNIIISANAPLKQDFPNPSS-SSISVDPVIEMPLERSRRH 59
           MGCG+ F++ L+T SVALITYNI+ISANAPLKQD P PSS S++ VDPVI+MPLERSRR 
Sbjct: 1   MGCGNFFFTVLITLSVALITYNILISANAPLKQDLPGPSSRSTLLVDPVIKMPLERSRR- 59

Query: 60  GAAANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMD 119
            +   KRLFHTA+TASDSVYNTWQCRVMYYW+KK ++GPNSEMGGFTRILHSGKPDK+M+
Sbjct: 60  SSFGKKRLFHTAVTASDSVYNTWQCRVMYYWYKKHKDGPNSEMGGFTRILHSGKPDKFME 119

Query: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKD 179
           EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWL+K DIKE+YILMAEPDHIIVKPIPNLSKD
Sbjct: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLQKTDIKEDYILMAEPDHIIVKPIPNLSKD 179

Query: 180 GLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVS 239
           GLGAAFPFFYIEPKKYESVLRKYFP+D GPITNIDPIGNSPV+VG++SLKKIAP WMNVS
Sbjct: 180 GLGAAFPFFYIEPKKYESVLRKYFPEDKGPITNIDPIGNSPVIVGKESLKKIAPTWMNVS 239

Query: 240 LAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQ 281
           LAMKKDPETDKAFGWVLEMY YAV+SAL+GVGNILYKDFMIQ
Sbjct: 240 LAMKKDPETDKAFGWVLEMYGYAVSSALHGVGNILYKDFMIQ 281




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441888|ref|XP_004138714.1| PREDICTED: uncharacterized protein LOC101214063 [Cucumis sativus] gi|449493329|ref|XP_004159257.1| PREDICTED: uncharacterized LOC101214063 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255557757|ref|XP_002519908.1| conserved hypothetical protein [Ricinus communis] gi|223540954|gb|EEF42512.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224089306|ref|XP_002308683.1| predicted protein [Populus trichocarpa] gi|222854659|gb|EEE92206.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388516027|gb|AFK46075.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225430416|ref|XP_002285410.1| PREDICTED: uncharacterized protein LOC100249264 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359806029|ref|NP_001241175.1| uncharacterized protein LOC100783788 [Glycine max] gi|255639667|gb|ACU20127.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388500814|gb|AFK38473.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356552496|ref|XP_003544603.1| PREDICTED: uncharacterized protein LOC100813136 [Glycine max] Back     alignment and taxonomy information
>gi|22327055|ref|NP_680219.1| uncharacterized protein [Arabidopsis thaliana] gi|17065062|gb|AAL32685.1| Unknown protein [Arabidopsis thaliana] gi|30725568|gb|AAP37806.1| At5g25265 [Arabidopsis thaliana] gi|110740334|dbj|BAF02062.1| hypothetical protein [Arabidopsis thaliana] gi|332006036|gb|AED93419.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
TAIR|locus:504955105366 AT5G25265 "AT5G25265" [Arabido 0.992 0.767 0.785 3.1e-122
TAIR|locus:2059573358 AT2G25260 "AT2G25260" [Arabido 0.961 0.759 0.663 7.9e-101
TAIR|locus:2185046358 AT5G13500 "AT5G13500" [Arabido 0.939 0.743 0.597 2.7e-91
TAIR|locus:2082314 802 AT3G01720 "AT3G01720" [Arabido 0.720 0.254 0.254 1.4e-05
TAIR|locus:504955105 AT5G25265 "AT5G25265" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
 Identities = 224/285 (78%), Positives = 247/285 (86%)

Query:     1 MGCGH-LFYSTLVTFSVALITYNIIISANAPLKQDFPNPXXXXX-XVDPVIEMPLERSRR 58
             MGCG  LFY  L+T SVALITYNIIISANAPLKQ FP         +DPVIE+P     R
Sbjct:     1 MGCGGTLFYPLLITLSVALITYNIIISANAPLKQGFPGRSSSSDISIDPVIELPRGGGSR 60

Query:    59 HGAAANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQN--GPNSEMGGFTRILHSGKPDK 116
             +      RLFHTA+TASDSVYNTWQCRVMYYWFKK Q   GP SEMGGFTRILHSGKPD+
Sbjct:    61 NNDGKRIRLFHTAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSEMGGFTRILHSGKPDQ 120

Query:   117 YMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNL 176
             YMDEIPTF+AQPLP+GMDQGY+VLNRPWAFVQWL++ DIKE+YILM+EPDHIIVKPIPNL
Sbjct:   121 YMDEIPTFVAQPLPSGMDQGYVVLNRPWAFVQWLQQTDIKEDYILMSEPDHIIVKPIPNL 180

Query:   177 SKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWM 236
             +KDGLGAAFPFFYIEPKKYE VLRKY+P+  GP+TNIDPIGNSPV+VG+D+LKKIAP WM
Sbjct:   181 AKDGLGAAFPFFYIEPKKYEKVLRKYYPEVRGPVTNIDPIGNSPVIVGKDALKKIAPTWM 240

Query:   237 NVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQ 281
             NVSLAMKKDPE DKAFGWVLEMYAYAV+SAL+GV NIL+KDFMIQ
Sbjct:   241 NVSLAMKKDPEADKAFGWVLEMYAYAVSSALHGVSNILHKDFMIQ 285




GO:0008150 "biological_process" evidence=ND
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2059573 AT2G25260 "AT2G25260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185046 AT5G13500 "AT5G13500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082314 AT3G01720 "AT3G01720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00