Citrus Sinensis ID: 023394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MASIPQFYSDDSFSSAELSQFPYPISAAMAAAGESTNYGECPGNSVSSCGGSVSSGNNGPIWGTEENFPIVSFENILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDQTVMKNDDNSHKGKNPYCVDDDVQMKQDEEWLQEAMASLMYLPYIAGYN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccEEcccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHcccccccEEEccccHcccHHHccccccHHHcccHcccccHHHHcccccHHHHHHHHHcccccHHcccc
Coil and Loop (DISEMBL)
masipqfysddsfssaelsqfpypiSAAMAAagestnygecpgnsvsscggsvssgnngpiwgteenfpivsfenilapesdvvsssplipftaeqlgiydsmvptlaeyngmamcgtneiqnygarfqlpsaacefgddccafmhdlkpmhpatgenwgiqnnqmasmedanvikVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRgrfarnnelceedqtvmknddnshkgknpycvdddvqMKQDEEWLQEAMASLMYLPYIAGYN
Flexible Loop (DISEMBL)
MASIPQFYSDDSFSSAELSQFPYPISAAMAAAGESTNYGECPGNSVSSCGGSVSSGNNGPIWGTEENFPIVSFENILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRylkkknqrnfnktikyacrktladrrvrvrgrfarnnelceedqtvmknddnshkgknPYCVDDDVQMKQDEEWLQEAMASLMYLPYIAGYN
Low Complexity Region (SEG)
MASIPQFYSDDSFSSAELSQFPYPISAAMAAAGESTNYGEcpgnsvsscggsvssgnngpIWGTEENFPIVSFENILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADrrvrvrgrfarNNELCEEDQTVMKNDDNSHKGKNPYCVDDDVQMKQDEEWLQEAMASLMYLPYIAGYN
Disordered region (IsUnstruct)
***********************************************************PIWGTEENFPIVSFENILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARN************************CV*********EEWLQEAMASLMYLPYIAG**
Disordered Region (DISOPRED)
***IPQF****************************************************************************************************************************************************************************************YLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFA***************************************WLQEAMASLMYLPYIAGY*
Disordered Region (DISEMBL)
**************SAELSQFPYPISAAMAAAGESTNYGECPGNSVSSCGGSVSSGNNGPIWGTEENFPIVSFENILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDQTVMKNDDNSHKGKNPYCVDDDVQMKQDEEWLQEAMASLMYLPYIAGYN
Disordered Region (DISPRO)
*****Q*YSDDSFSSAELSQFPYPISAAMAAAGES*NYGECPGNSVSSCGGSVSSGNNGPIWGTEENFPIVSFENILAPES**VSSSPLIPF*AEQLGIYDSMVPTL********CGTNEIQNYGARFQLPSAACEFGDDCCAFMH************************************EERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNE*C******************PYCVDDDVQMKQDEEWLQEAMASLMYLPYIAGYN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASIPQFYSDDSFSSAELSQFPYPISAAMAAAGESTNYGECPGNSVSSCGGSVSSGNNGPIWGTEENFPIVSFENILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDQTVMKNDDNSHKGKNPYCVDDDVQMKQDEEWLQEAMASLMYLPYIAGYN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
O50055	355	Zinc finger protein CONST	no	no	0.187	0.149	0.490	4e-08
Q940T9	362	Zinc finger protein CONST	no	no	0.190	0.149	0.444	2e-07
Q96502	347	Zinc finger protein CONST	no	no	0.151	0.123	0.558	3e-07
Q9FHH8	355	Zinc finger protein CONST	no	no	0.180	0.143	0.470	3e-07
Q9SK53	294	Zinc finger protein CONST	no	no	0.272	0.261	0.390	4e-07
Q39057	373	Zinc finger protein CONST	no	no	0.275	0.209	0.414	4e-07
Q9FDX8	395	Zinc finger protein HD1 O	no	no	0.197	0.141	0.456	5e-07
Q9LKL2	618	Two-component response re	no	no	0.226	0.103	0.36	8e-07
Q9C7E8	433	Zinc finger protein CONST	no	no	0.166	0.108	0.468	2e-05
Q9SSE5	372	Zinc finger protein CONST	no	no	0.159	0.120	0.466	2e-05

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 181 SVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEE 233
           S  +R+ R+LRY +KK  R F KTI+YA RK  A++R R++GRFA+  ++ EE
Sbjct: 282 SPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEE 334

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 184 ERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDQTV 237
           ER+ R++RY +K+  R F KTI+YA RK  A+ R R++GRFA+  +  E +  V
Sbjct: 294 EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVV 347

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 184 ERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFAR 226
           ER+ R+LRY +KK  R F+KTI+YA RK  A+ R R++GRFA+
Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAK 319

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 184 ERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEED 234
           +R+ R+LRY +K+  R F KTI+YA RK  A+ R R++GRFA+  E   +D
Sbjct: 284 DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDD 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 153 PATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKT 212
           P   E+ G+   +M + E   V    + S  ER+ R+LRY +K+  R F KTI+YA RK 
Sbjct: 202 PLVPESGGV-TAEMTNTETPAV----QLSPAEREARVLRYREKRKNRKFEKTIRYASRKA 256

Query: 213 LADRRVRVRGRFARNNELCEED 234
            A+ R R++GRFA+  +  E D
Sbjct: 257 YAEMRPRIKGRFAKRTDSREND 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 152 HPATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRK 211
           HP T +    Q    AS     +I V + S  +R+ R+LRY +K+  R F KTI+YA RK
Sbjct: 277 HPRTPKGTVEQQPDPASQ----MITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRK 332

Query: 212 TLADRRVRVRGRFARNNELCEE 233
             A+ R RV GRFA+     EE
Sbjct: 333 AYAEIRPRVNGRFAKREIEAEE 354

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 180 YSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNEL-CEEDQ 235
           +S  +R+ R+LRY +KK  R F KTI+Y  RK  A+ R R++GRFA+ +++  E DQ
Sbjct: 321 FSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQIEVDQ 377

Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 11/75 (14%)

Query: 161 IQNNQMASMEDA---------NVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRK 211
           +QN QM+ +  +         N ++V +  ++ R++ +L++ +K+NQR F+K I+Y  RK
Sbjct: 502 LQNGQMSMVHHSWSPAGNPPSNEVRVNK--LDRREEALLKFRRKRNQRCFDKKIRYVNRK 559

Query: 212 TLADRRVRVRGRFAR 226
            LA+RR RV+G+F R
Sbjct: 560 RLAERRPRVKGQFVR 574

Controls photoperiodic flowering response. Component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Positive regulator of CCA1 and LHY expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 183 EERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNE 229
           + R D + RY +K+  R ++KTI+Y  RK  AD R+RVRGRF + +E
Sbjct: 383 QNRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASE 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 185 RKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNE 229
           R + ++RY +KK  R F+K ++YA RK  AD R RV+GRF +  E
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGE 359

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224081445	283	predicted protein [Populus trichocarpa]	0.939	0.939	0.481	2e-66
255544666	277	conserved hypothetical protein [Ricinus	0.939	0.960	0.5	1e-63
359494537	241	PREDICTED: uncharacterized protein LOC10	0.756	0.887	0.575	4e-63
296082728	215	unnamed protein product [Vitis vinifera]	0.749	0.986	0.575	2e-62
147856564	240	hypothetical protein VITISV_022419 [Viti	0.752	0.887	0.570	6e-61
224094228	296	predicted protein [Populus trichocarpa]	0.968	0.925	0.445	2e-55
357451727	266	CCT [Medicago truncatula] gi|355485188|g	0.784	0.834	0.502	3e-46
449464656	245	PREDICTED: uncharacterized protein LOC10	0.738	0.853	0.451	2e-39
297829822	251	hypothetical protein ARALYDRAFT_478650 [	0.625	0.705	0.497	3e-37
18399780	251	protein activator of spomin::LUC2 [Arabi	0.784	0.884	0.409	6e-36

>gi|224081445|ref|XP_002306413.1| predicted protein [Populus trichocarpa] gi|222855862|gb|EEE93409.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/297 (48%), Positives = 187/297 (62%), Gaps = 31/297 (10%)

Query: 1   MASIPQFYSDDSFSSAELSQFPYPISAAMAAAGESTNYGECPGNSVSSCGGSVSSGNNGP 60
           MASIP FYSD  FS  + S+    IS+ MA        G     ++SS          G 
Sbjct: 1   MASIPHFYSDYQFSPDKFSE----ISSVMAQDHRYARTGSFSSTNMSS----------GA 46

Query: 61  IWGTEENFPIVSF---EN-----ILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNG 112
           ++G  +++   +F   EN     I   ES+++S  P      E+ GI + +VPTL +Y  
Sbjct: 47  MFGDHQDYSFPTFYDHENGCALDIFQGESEIMSPIPATKSLPERFGISNMVVPTLMDYKM 106

Query: 113 MAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMH-PATGENWGIQNNQMASMED 171
            + CG  +IQ++G  FQL S  CE+G+DCC  +    P   PA  ENW ++ N++ + E+
Sbjct: 107 GSNCGIAKIQSFGGGFQL-SDVCEYGEDCCGILPKFTPATCPAAEENWRLEYNRITAKEN 165

Query: 172 ANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELC 231
            N++KVGRY+VEERKDRILRYLKK+NQRNFNKTIKYACRKTLADRRVRVRGRFA+NNE+ 
Sbjct: 166 TNMVKVGRYTVEERKDRILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFAKNNEIF 225

Query: 232 EEDQTVMKNDDN---SHKGKNPYCVDDDVQMKQD----EEWLQEAMASLMYLPYIAG 281
           EE+  V KNDDN    H  K+ YC  D VQ+K D    E+WLQEA+ASLM++PYIA 
Sbjct: 226 EEETEVKKNDDNIPHHHHEKDTYCTSDAVQIKNDDDDEEQWLQEALASLMFVPYIAA 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544666|ref|XP_002513394.1| conserved hypothetical protein [Ricinus communis] gi|223547302|gb|EEF48797.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/290 (50%), Positives = 186/290 (64%), Gaps = 24/290 (8%)

Query: 1   MASI-PQFYSDDSFSSAELSQFPYPISAAMAAAGESTNYGECPGNSVSSCGGSVSSGN-N 58
           MASI P FYS   FS  E S+    I A     G +T +     NS ++ G  +S    N
Sbjct: 1   MASIDPHFYSGYQFSPDEFSEITSVI-AHQENYGTATTF--VATNSTAAAGAMLSHEQIN 57

Query: 59  GPIW-----GTEENFPIVSFENILAPESDVVSSSPLIPFTA--EQLGIYDSMVPTLAEYN 111
            P++     G  E FP          ESD +S  P    ++  EQLG+ D  VP+L +Y 
Sbjct: 58  LPLFYDNNGGLVEGFPTT--------ESDTLSRVPATTTSSFGEQLGVSDMSVPSLMDYK 109

Query: 112 GMAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPATGENWGIQNNQMASMED 171
            M +    +IQN+G  FQ  S ACE+G+DCC F+ + K + P TGE+WGIQ NQM ++ +
Sbjct: 110 -MGLGSIAKIQNFGGGFQF-SDACEYGEDCCGFVQNFKSVCPETGEDWGIQYNQMPAIHE 167

Query: 172 ANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELC 231
              +KVGRY+VEERKDRILRYLKK+NQRNFNKTIKYACRKTLADRRVRVRGRFARNNELC
Sbjct: 168 HANMKVGRYTVEERKDRILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELC 227

Query: 232 EEDQTVMKNDDNSHKGKNPYCVDDDVQMKQ-DEEWLQEAMASLMYLPYIA 280
           +E+    KN DN  + K  +C ++ ++MK  D++WLQEA+ASLMY+PYI 
Sbjct: 228 DEEIGRKKN-DNPLQEKESFCQNNALEMKNDDDDWLQEAVASLMYVPYIT 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494537|ref|XP_002263147.2| PREDICTED: uncharacterized protein LOC100264678 [Vitis vinifera]

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 166/226 (73%), Gaps = 12/226 (5%)

Query: 59  GPIWGTEENFPIVSFENILAPESDV-VSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCG 117
           G +WG E  F ++ ++  + PE DV V+ S L+    E+ G+ D  VP L E+N   +CG
Sbjct: 25  GAMWGDEGGFSLLDYQ--VQPEVDVGVAVSGLV--LPERGGVSDMAVPALPEFNMGGLCG 80

Query: 118 TNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPAT-GENWGIQNNQMASMEDANVIK 176
              +Q++G  +Q     CEFGD+C  F+ D +P++PAT G+NWGIQ N +A +E++N  K
Sbjct: 81  IAGVQSFGGGYQ--QDVCEFGDECGGFVPDFRPVYPATAGDNWGIQGNHIAGIEESNT-K 137

Query: 177 VGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDQT 236
           VGRYSVEERKDRILRYLKK+NQRNFNKTIKYACRKTLADRRVRVRGRFARN+ELCEE+  
Sbjct: 138 VGRYSVEERKDRILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNSELCEEEMA 197

Query: 237 VMKNDDNSHKGKNPYCVDDDVQMKQDEE-WLQEAMASLMYLPYIAG 281
           V KN +N+ + K  Y  +D VQMK DEE WLQEA+ASLMY+PY +G
Sbjct: 198 VKKN-ENTQEEKELY-YNDTVQMKHDEEDWLQEAIASLMYMPYFSG 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082728|emb|CBI21733.3| unnamed protein product [Vitis vinifera]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/224 (57%), Positives = 165/224 (73%), Gaps = 12/224 (5%)

Query: 61  IWGTEENFPIVSFENILAPESDV-VSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTN 119
           +WG E  F ++ ++  + PE DV V+ S L+    E+ G+ D  VP L E+N   +CG  
Sbjct: 1   MWGDEGGFSLLDYQ--VQPEVDVGVAVSGLV--LPERGGVSDMAVPALPEFNMGGLCGIA 56

Query: 120 EIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPAT-GENWGIQNNQMASMEDANVIKVG 178
            +Q++G  +Q     CEFGD+C  F+ D +P++PAT G+NWGIQ N +A +E++N  KVG
Sbjct: 57  GVQSFGGGYQ--QDVCEFGDECGGFVPDFRPVYPATAGDNWGIQGNHIAGIEESNT-KVG 113

Query: 179 RYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDQTVM 238
           RYSVEERKDRILRYLKK+NQRNFNKTIKYACRKTLADRRVRVRGRFARN+ELCEE+  V 
Sbjct: 114 RYSVEERKDRILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNSELCEEEMAVK 173

Query: 239 KNDDNSHKGKNPYCVDDDVQMKQDEE-WLQEAMASLMYLPYIAG 281
           KN +N+ + K  Y  +D VQMK DEE WLQEA+ASLMY+PY +G
Sbjct: 174 KN-ENTQEEKELY-YNDTVQMKHDEEDWLQEAIASLMYMPYFSG 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856564|emb|CAN82490.1| hypothetical protein VITISV_022419 [Vitis vinifera]

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 165/226 (73%), Gaps = 13/226 (5%)

Query: 59  GPIWGTEENFPIVSFENILAPESDV-VSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCG 117
           G +WG E  F ++ ++  + PE DV V+ S L+    E+ G+ D  VP L E+N   +CG
Sbjct: 25  GAMWGDEGGFSLLDYQ--VQPEVDVGVAVSGLV--LPERGGVSDMAVPALPEFNMGGLCG 80

Query: 118 TNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPAT-GENWGIQNNQMASMEDANVIK 176
              +Q++G  +Q     CEFGD+C  F+ D +P++PAT G+NWGIQ N +A +E++N  K
Sbjct: 81  IAGVQSFGGGYQ--QDVCEFGDECGGFVPDFRPVYPATAGDNWGIQGNHIAGIEESNT-K 137

Query: 177 VGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDQT 236
           VGRYSVEERKDRILRYLKK+NQRNFNKTIK ACRKTLADRRVRVRGRFARN+ELCEE+  
Sbjct: 138 VGRYSVEERKDRILRYLKKRNQRNFNKTIK-ACRKTLADRRVRVRGRFARNSELCEEEMA 196

Query: 237 VMKNDDNSHKGKNPYCVDDDVQMKQDEE-WLQEAMASLMYLPYIAG 281
           V KN +N+ + K  Y  +D VQMK DEE WLQEA+ASLMY+PY +G
Sbjct: 197 VKKN-ENTQEEKELY-YNDTVQMKHDEEDWLQEAIASLMYMPYFSG 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094228|ref|XP_002310099.1| predicted protein [Populus trichocarpa] gi|222853002|gb|EEE90549.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/303 (44%), Positives = 180/303 (59%), Gaps = 29/303 (9%)

Query: 1   MASIPQFYSDDSFSSAELSQFPYPISAAMAAAGESTNYGECPGNSVSSCGGSVSSGNNGP 60
           MAS+P F+SD  FS  E S+    IS+ M         G     ++SS  G++SS + G 
Sbjct: 1   MASVPHFHSDYHFSPDEFSE----ISSVMDQDHRYARTGSFSSTNMSS--GAISSPSGGA 54

Query: 61  IWGTEENFPIVSFEN--------ILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNG 112
             G  ++    +F +        I   ES+++S  P      E  GI D +VPT  +Y  
Sbjct: 55  KLGEHQDHSFPTFYDHKNCGALDIFQGESEIMSPIPATNSMPEIFGISDMVVPTWMDYKM 114

Query: 113 MAMCGTNEIQNYGARFQLPSAACEFGDDCCAFMHDLKPMH-PATGENWG-----IQNNQM 166
            +  G  +I+N+   FQ+ S  CE+G+DC  F  +  P+  PA  ENW      ++ N +
Sbjct: 115 GSNGGIAKIENFSCGFQI-SDVCEYGEDCDGFSPNFTPVICPAGEENWARTFFRLEYNLI 173

Query: 167 ASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFAR 226
            + E  ++ KVGRY+VEERKDRI RYLKK+NQRNFNKTIKYACRKTLADRRVRVRGRFAR
Sbjct: 174 TAKESTDMAKVGRYTVEERKDRISRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFAR 233

Query: 227 NNELCEEDQTVMKNDDNS---HKGKNPYCVDDDVQMK----QDEEWLQEAMASLMYL-PY 278
           NNE+ EE+  V K+DD+      GK  YC  + VQ+K     DE+WLQEA+AS +Y+ PY
Sbjct: 234 NNEIFEEETEVKKDDDSIPYLRHGKETYCTSNAVQIKNDDDDDEQWLQEALASPVYVPPY 293

Query: 279 IAG 281
           IAG
Sbjct: 294 IAG 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451727|ref|XP_003596140.1| CCT [Medicago truncatula] gi|355485188|gb|AES66391.1| CCT [Medicago truncatula]

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/245 (50%), Positives = 151/245 (61%), Gaps = 23/245 (9%)

Query: 50  GGSVSSGNNGPIWGTEENFPIV-----SFENILAPESDVVSSSPLIPFTAEQLGIYDSMV 104
           G S S  +N  +WG +EN   V     +F+ I++ + D  +S+  IP   +Q    D  V
Sbjct: 23  GFSSSIMDNTMMWGCQENIMPVYENYGAFDQIVSLDCD--ASASWIPNLVDQQ---DFAV 77

Query: 105 PTLAEYNGMAMCGTNEIQNYGARF---QLPSAACEFGDD-CCAFMHDLKP--MHPATG-E 157
           P L     M   G    QN+  R+   Q      EF +D CC  + D+KP   +P    E
Sbjct: 78  PALLSDCKMGFYGGG-FQNFNGRYNNNQPHIIGHEFVEDQCCGLVEDVKPPTTYPNVARE 136

Query: 158 NWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRR 217
           NWGIQ NQ+A++E+ N IKVGRYS EERK+RILRYLKK+NQRNFNKTIKYACRKTLADRR
Sbjct: 137 NWGIQGNQLAAVEEPN-IKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRR 195

Query: 218 VRVRGRFARNNELCEEDQTVMKNDDNSHKGKNP--YCVDD-DVQMKQDEE-WLQEAMASL 273
           VRVRGRFARNNE CEED    K  +N H   N   Y  D    Q+K +EE WLQEAMASL
Sbjct: 196 VRVRGRFARNNETCEEDHMATKKLENHHDHINEDFYGADSFQFQLKNEEEDWLQEAMASL 255

Query: 274 MYLPY 278
           +YL +
Sbjct: 256 VYLSH 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464656|ref|XP_004150045.1| PREDICTED: uncharacterized protein LOC101221095 [Cucumis sativus] gi|449502519|ref|XP_004161664.1| PREDICTED: uncharacterized protein LOC101230503 [Cucumis sativus]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 140/226 (61%), Gaps = 17/226 (7%)

Query: 65  EENFPIVSFENILAPESDVVSSSPLIPF-TAEQLGIY----DSMVPTLAEYNGMAMCGTN 119
           EE F + SF+  ++P+    S + L PF T +   +Y    D  VP+L E+N M+    +
Sbjct: 27  EETF-VSSFDQTVSPDQSS-SDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFN-MSTYDIH 83

Query: 120 EIQNYGARFQLPSAACEFGDDCCAFMHDLKPMHPATGENWGIQNN-QMASMEDANVIKVG 178
            + N   + Q+P   C +GD    F+ +LKP++  T   WG Q+  ++ ++E+ N+    
Sbjct: 84  SLIN--CQPQVP-GTCNYGDQLIGFVPELKPLYRDT---WGNQSRYEIHAVEETNIKVAS 137

Query: 179 RYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFAR-NNELCEEDQTV 237
           RYS EERK+RI+RYLKK+NQRNFNKTIKYACRKTLADRR RVRGRFAR NNELC+ D  +
Sbjct: 138 RYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEI 197

Query: 238 -MKNDDNSHKGKNPYCVDDDVQMKQDEEWLQEAMASLMYLPYIAGY 282
            +K +  S    N     D    +++E WLQE   SLMYLPY+A Y
Sbjct: 198 PLKTNQFSTPNHNLIKQIDQTNKEEEESWLQELATSLMYLPYVANY 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829822|ref|XP_002882793.1| hypothetical protein ARALYDRAFT_478650 [Arabidopsis lyrata subsp. lyrata] gi|297328633|gb|EFH59052.1| hypothetical protein ARALYDRAFT_478650 [Arabidopsis lyrata subsp. lyrata]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 126/203 (62%), Gaps = 26/203 (12%)

Query: 84  VSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNEIQNYGARFQLPSAACEF--GD-- 139
            SS+P   F  +  GI D  VP   EYN           NY  +  + +A   F  GD  
Sbjct: 49  TSSNPESIFVPQVFGISDVSVP---EYN-----------NYYQKMSVNNATQYFHGGDHQ 94

Query: 140 DCCAFMHDLKPM-HPATGE-NWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKN 197
           +  AF  ++KP+  PATGE +WG   N    ++     KVGRYSVEERKDRI+RYLKKKN
Sbjct: 95  EYYAFSPEIKPLFRPATGEQSWG---NSEGGIQAEPNTKVGRYSVEERKDRIMRYLKKKN 151

Query: 198 QRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDQTVMKNDDN-SHKGKNPYCVDDD 256
           QRNFNKTIKY CRKTLADRRVRVRGRFARNN+ CEE   + KN +N S K ++ +   DD
Sbjct: 152 QRNFNKTIKYVCRKTLADRRVRVRGRFARNNDTCEEQSHMSKNHNNHSEKEEDMFSGSDD 211

Query: 257 --VQMKQDEEWLQEAMASLMYLP 277
             +QM+ D+ WL EAM++L+  P
Sbjct: 212 YLIQMEHDDGWLHEAMSNLIPFP 234

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399780|ref|NP_566437.1| protein activator of spomin::LUC2 [Arabidopsis thaliana] gi|6997164|gb|AAF34828.1| hypothetical protein [Arabidopsis thaliana] gi|9279773|dbj|BAB01418.1| unnamed protein product [Arabidopsis thaliana] gi|21553722|gb|AAM62815.1| unknown [Arabidopsis thaliana] gi|59894822|gb|AAX11222.1| activator of sporamin LUC 2 [Arabidopsis thaliana] gi|332641736|gb|AEE75257.1| protein activator of spomin::LUC2 [Arabidopsis thaliana]

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/286 (40%), Positives = 149/286 (52%), Gaps = 64/286 (22%)

Query: 2   ASIPQFYSD-DSFSSAELSQFPYPISAAMAAAGESTNYGECPGNSVSSCGGSVSSGNNGP 60
           +S+PQFY+D  +FS    SQF    S     +  S+   +C G                 
Sbjct: 3   SSLPQFYADFTTFSCETSSQFHGSSSCPDVDSSLSSYLDDCYG----------------- 45

Query: 61  IWGTEENFPIVSFENILAPESDVVSSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNE 120
                      SF           SS+P   F  +  GI D  VP   EYN         
Sbjct: 46  -----------SFN---------TSSNPESIFVPQVFGISDVSVP---EYN--------- 73

Query: 121 IQNYGARFQLPSAACEF--GD--DCCAFMHDLKPM-HPATGE-NWGIQNNQMASMEDANV 174
             NY  +  + +A   F  GD  +   F  ++KP+  PATGE +WG   N    ++    
Sbjct: 74  --NYYQKMSVNNATHYFHGGDHQEYYGFSPEIKPLFRPATGEQSWG---NSEGGIQAEPN 128

Query: 175 IKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEED 234
            KVGRYSVEERKDRI+RYLKKKNQRNFNKTIKY CRKTLADRRVRVRGRFARNN+ CEE 
Sbjct: 129 TKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFARNNDTCEEQ 188

Query: 235 QTVMKNDDN-SHKGKNPYCVDDD--VQMKQDEEWLQEAMASLMYLP 277
             + KN +N S K ++ +   DD  +QM+ D+ WL EAM++L+  P
Sbjct: 189 PHMSKNHNNHSEKEEDMFSGSDDYLIQMEHDDGWLHEAMSNLIPFP 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2090374	251	ASML2 "activator of spomin::LU	0.621	0.701	0.445	2.4e-35
TAIR|locus:2051099	410	AT2G33350 "AT2G33350" [Arabido	0.388	0.268	0.4	1.9e-14
TAIR|locus:2177911	307	AT5G41380 "AT5G41380" [Arabido	0.279	0.257	0.487	2.3e-14
TAIR|locus:2018344	386	AT1G04500 "AT1G04500" [Arabido	0.325	0.238	0.4	7.4e-14
TAIR|locus:2195518	293	AT1G63820 [Arabidopsis thalian	0.257	0.249	0.474	2.8e-11
TAIR|locus:2168083	241	AT5G59990 "AT5G59990" [Arabido	0.226	0.265	0.461	9.4e-09
TAIR|locus:2132902	261	AT4G27900 "AT4G27900" [Arabido	0.116	0.126	0.575	0.00042
TAIR|locus:2178441	264	AT5G53420 "AT5G53420" [Arabido	0.116	0.125	0.575	0.00044

TAIR|locus:2090374 ASML2 "activator of spomin::LUC2" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 90/202 (44%), Positives = 116/202 (57%)

Query:    85 SSSPLIPFTAEQLGIYDSMVPTLAEYNGMAMCGTNEIQNYGARFQLPSAACEF--GD--D 140
             SS+P   F  +  GI D  VP   EYN           NY  +  + +A   F  GD  +
Sbjct:    50 SSNPESIFVPQVFGISDVSVP---EYN-----------NYYQKMSVNNATHYFHGGDHQE 95

Query:   141 CCAFMHDLKPM-HPATGE-NWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQ 198
                F  ++KP+  PATGE +WG  N++     + N  KVGRYSVEERKDRI+RYLKKKNQ
Sbjct:    96 YYGFSPEIKPLFRPATGEQSWG--NSEGGIQAEPNT-KVGRYSVEERKDRIMRYLKKKNQ 152

Query:   199 RNFNKTIKYACRKTLADXXXXXXXXXXXNNELCEEDQTVMKNDDN-SHKGKNPYCVDDD- 256
             RNFNKTIKY CRKTLAD           NN+ CEE   + KN +N S K ++ +   DD 
Sbjct:   153 RNFNKTIKYVCRKTLADRRVRVRGRFARNNDTCEEQPHMSKNHNNHSEKEEDMFSGSDDY 212

Query:   257 -VQMKQDEEWLQEAMASLMYLP 277
              +QM+ D+ WL EAM++L+  P
Sbjct:   213 LIQMEHDDGWLHEAMSNLIPFP 234

GO:0005739 "mitochondrion" evidence=ISM

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2051099 AT2G33350 "AT2G33350" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 50/125 (40%), Positives = 71/125 (56%)

Query:   146 HDLKPM-HPATGENWGIQNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKT 204
             H + P  HPA G    +  N    +ED+ + KVG+ S E+RK++I RY+KK+N+RNFNK 
Sbjct:   277 HLVTPQAHPALGP---VDIN---GLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKK 330

Query:   205 IKYACRKTLADXXXXXXXXXXXNNELCEEDQTVMKNDDNSHKGKNPYCVDDDVQMKQDEE 264
             IKYACRKTLAD           N+E  E ++       +SH        +DD+ +K DEE
Sbjct:   331 IKYACRKTLADSRPRVRGRFAKNDEFGEPNRQAF----SSHHDDED---EDDMGVK-DEE 382

Query:   265 WLQEA 269
              L ++
Sbjct:   383 QLVDS 387

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177911 AT5G41380 "AT5G41380" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 40/82 (48%), Positives = 53/82 (64%)

Query:   162 QNNQMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADXXXXXX 221
             +N+ M   E+ N  KVGRYS EERK++I +Y  K+NQRNF KTIKYACRKTLAD      
Sbjct:   193 ENSTMPFSEEQN-FKVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIR 251

Query:   222 XXXXXNNELCEEDQTVMKNDDN 243
                  N+E+ E     +++DD+
Sbjct:   252 GRFARNDEVVEIPN--IEDDDS 271

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018344 AT1G04500 "AT1G04500" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 7.4e-14, P = 7.4e-14
 Identities = 40/100 (40%), Positives = 62/100 (62%)

Query:   165 QMASMEDANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADXXXXXXXXX 224
             ++  ++D +  KVG+ S E+RK++I RY+KK+N+RNF+K IKYACRKTLAD         
Sbjct:   268 EITGLDDPSFNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRF 327

Query:   225 XXNNELCEEDQTVMKNDDNSHKGKNPYCVDDDVQMKQDEE 264
               N+E  E ++       +SH   +    DDDV +K++E+
Sbjct:   328 AKNDEFGEPNRQAC----SSHHEDD----DDDVGVKEEEQ 359

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2195518 AT1G63820 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 37/78 (47%), Positives = 48/78 (61%)

Query:   171 DANVIKVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADXXXXXXXXXXXNNEL 230
             D   ++VGRYS EERK++I +Y  K+ QRNF KTIKYACRKTLAD           N+E+
Sbjct:   178 DEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARNDEV 237

Query:   231 CEEDQ-----TVMKNDDN 243
              E  +     T  +NDD+
Sbjct:   238 FENPKIASSFTRQENDDD 255

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2168083 AT5G59990 "AT5G59990" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 9.4e-09, P = 9.4e-09
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query:   176 KVGRYSVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADXXXXXXXXXXXNNELCEEDQ 235
             K  +YS EE+K++I +Y  K+N RNFNK IKY CRKTLAD           N+E+ +++Q
Sbjct:   154 KAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEISQQEQ 213

Query:   236 T-VMK 239
               VM+
Sbjct:   214 VDVME 218

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132902 AT4G27900 "AT4G27900" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00042, P = 0.00042
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query:   183 EERKDRILRYLKKKNQRNFNKTIKYACRKTLAD 215
             E+R++++ RY  KK++RNF + IKYACRK LAD
Sbjct:   212 EDRREKLSRYRNKKSKRNFGRKIKYACRKALAD 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178441 AT5G53420 "AT5G53420" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00044, P = 0.00044
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query:   183 EERKDRILRYLKKKNQRNFNKTIKYACRKTLAD 215
             E+R++++ RY  KK++RNF + IKYACRK LAD
Sbjct:   216 EDRREKLSRYKNKKSRRNFGRKIKYACRKALAD 248


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       252   0.00082  114 3  11 22  0.49    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  212 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.73u 0.10s 21.83t   Elapsed:  00:00:01
  Total cpu time:  21.73u 0.10s 21.83t   Elapsed:  00:00:01
  Start:  Fri May 10 00:13:49 2013   End:  Fri May 10 00:13:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
pfam06203	45	pfam06203, CCT, CCT motif	1e-20

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 82.3 bits (204), Expect = 1e-20
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 185 RKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNE 229
           R+  +LRY +K+  R F+K I+YA RK +A+ R RV+GRF + +E
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.79
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	96.33
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	95.57

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.79  E-value=4.4e-20  Score=131.27  Aligned_cols=45  Identities=47%  Similarity=0.938  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhhcCCCCccccchhhhhhhhcCccCceeecCCc
Q 023394          185 RKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNE  229 (283)
Q Consensus       185 R~~~l~RYreKRk~R~f~KkIRY~~RK~~Ad~RpRVKGRFvk~~e  229 (283)
                      |+++|+||++||++|+|+|+|+|+|||.+||.|||||||||+.+|
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            689999999999999999999999999999999999999999874

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=96.33  E-value=0.0014  Score=54.15  Aligned_cols=42  Identities=38%  Similarity=0.670  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHHhhhcCCCCccccchhhhhhhhcCccCc
Q 023394          181 SVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRG  222 (283)
Q Consensus       181 s~~eR~~~l~RYreKRk~R~f~KkIRY~~RK~~Ad~RpRVKG  222 (283)
                      ....|...+.||++|++.|.|.++++|..|+..|+.|+|+||
T Consensus       289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (340)
T KOG1601|consen  289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG  330 (340)
T ss_pred             ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence            477999999999999999999999999999999999999999

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=95.57  E-value=0.0074  Score=39.64  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCccccc
Q 023394          183 EERKDRILRYLKKKNQRNFNKTIKYA  208 (283)
Q Consensus       183 ~eR~~~l~RYreKRk~R~f~KkIRY~  208 (283)
                      ..|++.|+||.||||.|... +.-|.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            47999999999999999987 44443

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	94.95
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	93.43

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=93.43  E-value=0.023  Score=34.93  Aligned_cols=19  Identities=32%  Similarity=0.611  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHhhhcCCCC
Q 023394          185 RKDRILRYLKKKNQRNFNK  203 (283)
Q Consensus       185 R~~~l~RYreKRk~R~f~K  203 (283)
                      |++.|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            6789999999999987654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00