Citrus Sinensis ID: 023406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEccccEEEEEc
Coil and Loop (DISEMBL)
mersayvsypyengvmmtrdpkprlrwtaDLHDRFVDAVtklggpdkatpKSVLRLMGLKGLTLYHLKSHLQYRLGQQTrrqhgadqhkennggssfvnfyngslatsmtssrgdedqgpisEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSlsvdssvtgnvnAEAARDQLTTFNLAISNLMESMNeqdrkgnatEFNDMikkgnangssfrvqgdcgeregnegdnkhkvdggsthfdlntkgsydfngiaangiglgpstmlsyn
Flexible Loop (DISEMBL)
mersayvsypyengvmmtrdpkpRLRWTADLHDRFVDAvtklggpdkatpksVLRLMGLKGLTLYHLKSHLQYRLGQQTRRQHGAdqhkennggssFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKkgnangssfrvQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANgiglgpstmlsyn
Low Complexity Region (SEG)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAevqqrlqeqlevqerlqMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Disordered region (IsUnstruct)
********YPYENGVMM*****PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYRL***************************************************************************AQGKYLQAIL*************************LTTFNLAI**************************************************************NTKGSYDFNGIAANGIG**********
Disordered Region (DISOPRED)
*************************RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYR*********************************************************************************************************************************************************************************************************S******
Disordered Region (DISEMBL)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYRL**************ENNGGSSFVNFYNGSLATS***********PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Disordered Region (DISPRO)
**********************PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYRLGQQT**************************************QGPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS*****************************************************************************VDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVxxxxxxxxxxxxxxxxxxxxxGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.521	0.410	0.531	2e-41
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.464	0.317	0.445	2e-26
Q700D9	255	Putative Myb family trans	no	no	0.202	0.223	0.637	1e-13
Q93WJ9	403	Transcription repressor K	no	no	0.209	0.146	0.616	1e-13
Q9C616	388	Probable transcription fa	no	no	0.202	0.146	0.637	4e-13
Q0J235	532	Probable transcription fa	no	no	0.251	0.133	0.554	5e-13
Q9FJV5	276	Probable transcription fa	no	no	0.184	0.188	0.660	1e-12
Q941I2	322	Probable transcription fa	no	no	0.209	0.183	0.583	2e-12
Q9ZWJ9	664	Two-component response re	no	no	0.237	0.100	0.478	2e-09
Q940D0	690	Two-component response re	no	no	0.237	0.097	0.478	3e-09

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 117/158 (74%), Gaps = 11/158 (6%)

Query: 12  ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
           ++G+++T DPKPRLRWT +LH+RFVDAV +LGGPDKATPK+++R+MG+KGLTLYHLKSHL
Sbjct: 24  DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83

Query: 72  Q-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAE 130
           Q +RLG+Q  +++G    KE +  S+     N + ++ M S   +E           Q E
Sbjct: 84  QKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE----------MQME 133

Query: 131 VQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 168
           VQ+RL EQLEVQ  LQ+RIEAQGKY+Q+IL++A ++L+
Sbjct: 134 VQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA 171

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 96/148 (64%), Gaps = 17/148 (11%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQ--- 77
           K R+RWT +LH+ FV+AV +LGG ++ATPK+VL+L+   GLT+YH+KSHLQ YR  +   
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query: 78  QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVQQRLQE 137
           +T    G  Q K+    +S  +  +  + TS+           I++AL+ Q EVQ+RL E
Sbjct: 291 ETSEVTGEPQEKK---MTSIEDIKSLDMKTSVE----------ITQALRLQMEVQKRLHE 337

Query: 138 QLEVQERLQMRIEAQGKYLQAILQKAQK 165
           QLE+Q  LQ++IE QG+YLQ + +K QK
Sbjct: 338 QLEIQRSLQLQIEKQGRYLQMMFEKQQK 365

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YR 74
           R P PRLRWT +LH  FV AV  LGG  KATPK VL++M +KGLT+ H+KSHLQ YR
Sbjct: 19 VRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQTRR 81
           PR+RWT+ LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T +
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQT 79
           PR+RWT  LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 271

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 3/74 (4%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQTRR 81
           PR+RWT+ LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T +
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 82  QHGADQHKENNGGS 95
              A      +GGS
Sbjct: 385 P--AASSGPADGGS 396

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YR 74
           PR+RWT+ LH  FV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 158

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQTRR 81
           PR+RWT  LH  FV AV  LGG ++ATPKSVL LM ++ LTL H+KSHLQ YR  + T +
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQTR 80
           KPR+ W+ +LH +FV AV +LG  DKA PK +L +M + GLT  ++ SHLQ YR+    R
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLGV-DKAVPKKILEMMNVPGLTRENVASHLQKYRI--YLR 272

Query: 81  RQHGADQHKEN 91
           R  G  QH+ N
Sbjct: 273 RLGGVSQHQGN 283

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQTR 80
           KPR+ W+ +LH +FV AV +LG  +KA PK +L LM + GLT  ++ SHLQ YR+    R
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLGV-EKAVPKKILELMNVPGLTRENVASHLQKYRI--YLR 293

Query: 81  RQHGADQHKEN 91
           R  G  QH+ N
Sbjct: 294 RLGGVSQHQGN 304

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
356495941	270	PREDICTED: myb family transcription fact	0.900	0.940	0.620	2e-76
224071437	279	predicted protein [Populus trichocarpa]	0.929	0.939	0.586	6e-74
359474709	261	PREDICTED: myb family transcription fact	0.886	0.957	0.568	2e-70
224138332	231	predicted protein [Populus trichocarpa]	0.797	0.974	0.576	3e-69
440583724	286	similar to myb family transcription fact	0.893	0.881	0.561	1e-67
255557857	260	transcription factor, putative [Ricinus	0.886	0.961	0.546	1e-66
449453324	261	PREDICTED: myb family transcription fact	0.865	0.934	0.540	3e-66
357484737	323	Myb family transcription factor-related	0.904	0.789	0.569	5e-65
225879090	280	hypothetical protein [Arabidopsis thalia	0.943	0.95	0.526	3e-64
297791167	280	hypothetical protein ARALYDRAFT_356449 [	0.936	0.942	0.525	3e-63

>gi|356495941|ref|XP_003516829.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 170/274 (62%), Positives = 209/274 (76%), Gaps = 20/274 (7%)

Query: 13  NGVMMT--RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           NGV+MT  RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 10  NGVIMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 69

Query: 71  LQ-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG--PISEALKC 127
           LQ YRLGQQ ++Q+  + HKEN+   S+VNF N SLA + TS RGD++ G  PI+EAL+C
Sbjct: 70  LQKYRLGQQAQKQN-EEVHKENS-RCSYVNFSNRSLAPN-TSYRGDDEGGEIPIAEALRC 126

Query: 128 QAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 187
           Q EVQ+RL+EQL+VQ++LQMRIEAQGKYLQ++L+KAQ+SLS+D    G  + EA+R +LT
Sbjct: 127 QIEVQKRLEEQLKVQKKLQMRIEAQGKYLQSVLEKAQRSLSLD----GPGSLEASRAELT 182

Query: 188 TFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVD 247
            FN A+SN ME+MN +D K N  E N+   K  ++GS+F  Q + G RE N  D K KV+
Sbjct: 183 EFNSALSNFMENMN-KDSKQNIIEVNNFYSK--SHGSAFYNQ-EVG-REQNR-DQKPKVE 236

Query: 248 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 281
           GGS  FDLN KGS D   ++A G  +  + + SY
Sbjct: 237 GGSIQFDLNIKGSNDL--VSAGGAEMDANMVSSY 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071437|ref|XP_002303459.1| predicted protein [Populus trichocarpa] gi|222840891|gb|EEE78438.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 163/278 (58%), Positives = 191/278 (68%), Gaps = 16/278 (5%)

Query: 8   SYPYENGV-MMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH 66
           SYPYENGV MMTRDP+PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH
Sbjct: 12  SYPYENGVVMMTRDPRPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH 71

Query: 67  LKSHLQ-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPIS--E 123
           LKSHLQ YRLGQQ RRQ+  +Q KE     S V    G       S +       IS  E
Sbjct: 72  LKSHLQKYRLGQQARRQNNTEQSKE-----SRVRAPQGQAPVHQESMKNKVQYREISVAE 126

Query: 124 ALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAAR 183
           AL CQ EVQ+ LQE+LEVQ++LQMRIEAQGKYLQAIL+KAQKSLS + +   N   +A R
Sbjct: 127 ALNCQIEVQKTLQEKLEVQKKLQMRIEAQGKYLQAILEKAQKSLSQNLNDDSNGKLKATR 186

Query: 184 DQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNK 243
             LT FN A+ +LME++N +DRK + T+   +  K N      + +G   E +    D K
Sbjct: 187 AHLTGFNSAVYSLMENLNAEDRKPSITDLKGINMKENGPAMHIQREGQTQETK----DVK 242

Query: 244 HKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 281
           H + G S +FDLNTKG+YDF  ++ANG  L    MLSY
Sbjct: 243 HHLQGDSINFDLNTKGNYDF--VSANGSEL-ELKMLSY 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474709|ref|XP_002264257.2| PREDICTED: myb family transcription factor APL-like [Vitis vinifera] gi|296088397|emb|CBI37388.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 157/276 (56%), Positives = 192/276 (69%), Gaps = 26/276 (9%)

Query: 11  YENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           YENGV+MTRDP+PRLRWT DLHDRFVDAVTKLGGP KATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 5   YENGVVMTRDPRPRLRWTPDLHDRFVDAVTKLGGPHKATPKSVLRLMGLKGLTLYHLKSH 64

Query: 71  LQ-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGP-ISEALKCQ 128
           LQ YRLGQQ+R+Q   +        S +    +G+ A S  SSR +E  G  I+EA++CQ
Sbjct: 65  LQKYRLGQQSRKQSITE-------NSDYRTHASGTSAKS--SSRNNEQGGILIAEAVRCQ 115

Query: 129 AEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTT 188
            EVQ++L EQ+EVQ++LQMRIEAQGKYLQA+L KAQ+SLS++ +  G++  EA R QLT 
Sbjct: 116 VEVQKQLLEQIEVQKKLQMRIEAQGKYLQAVLDKAQQSLSINVNCPGSL--EAMRAQLTN 173

Query: 189 FNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNE---GDNKHK 245
           FN+A+S+L E+ NE+D K N  E    I    ANGS F        RE  E    D K +
Sbjct: 174 FNMALSSLTENTNEEDMKVNIIE--KSIPSNRANGSVF-----TAYREAEELVNKDVKFR 226

Query: 246 VDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 281
              G  HFDLNTKG+Y+F G  ANG     + M++Y
Sbjct: 227 EGEGFRHFDLNTKGNYEFAG--ANGADF-EAKMIAY 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138332|ref|XP_002326576.1| predicted protein [Populus trichocarpa] gi|222833898|gb|EEE72375.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 181/267 (67%), Gaps = 42/267 (15%)

Query: 19  RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQ 77
           RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ YRLG 
Sbjct: 1   RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGH 60

Query: 78  QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVQQRLQE 137
           Q RRQ+ ++Q +E+                             ++EAL  Q EVQ+ LQE
Sbjct: 61  QARRQNISEQSRESR----------------------------VAEALDSQIEVQKTLQE 92

Query: 138 QLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLM 197
           QLEVQ++LQMRIEAQGKYLQ+IL+KAQKSLS + +  GN N EA R QLT FNLAIS+L+
Sbjct: 93  QLEVQQKLQMRIEAQGKYLQSILEKAQKSLSQNLNDDGNGNLEATRAQLTGFNLAISSLI 152

Query: 198 ESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGN---EGDNKHKVDGGSTHFD 254
           E++N +DRK   T+   +      NGS+  +     +REG      D KH + G S HFD
Sbjct: 153 ENLNAEDRKPCITDLKGV--NIRTNGSAIHI-----DREGQTQETKDVKHHLQGDSIHFD 205

Query: 255 LNTKGSYDFNGIAANGIGLGPSTMLSY 281
           LNTKG+YDF  +AANG  L    MLSY
Sbjct: 206 LNTKGTYDF--VAANGSEL-ELKMLSY 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440583724|emb|CCH47226.1| similar to myb family transcription factor APL [Lupinus angustifolius]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/278 (56%), Positives = 192/278 (69%), Gaps = 26/278 (9%)

Query: 14  GVMM--TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
           GVMM  TRD KPRLRWT DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL
Sbjct: 18  GVMMSMTRDTKPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 77

Query: 72  Q-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG--------PIS 122
           Q YRLGQ TR+Q+  + HKEN    S+VNF + S +   T  RGD ++G        PI+
Sbjct: 78  QKYRLGQHTRKQN-EEPHKENT-RCSYVNFSSHS-SEPNTIYRGDNEKGLNNYNREIPIA 134

Query: 123 EALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAA 182
           +AL+ Q EVQ++L+EQLEVQ +LQMRIEAQG YLQA+L+K+Q+S S+D    G    EA+
Sbjct: 135 KALRHQIEVQKKLEEQLEVQRKLQMRIEAQGMYLQAVLEKSQRSFSMD----GPDRLEAS 190

Query: 183 RDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDN 242
           R +L  FN  +SN ME++N +D K N    ND+ +KG+ + S    QG   E +    D 
Sbjct: 191 RAKLNEFNSVLSNFMENVN-KDCKENLVGMNDLYRKGHGSSSFHIYQGGIEENK----DQ 245

Query: 243 KHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLS 280
           K KV+GG   FDLN KGSYD   ++A G  +  + MLS
Sbjct: 246 KSKVEGGMIQFDLNIKGSYDL--VSAGGAEM-ETKMLS 280

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557857|ref|XP_002519958.1| transcription factor, putative [Ricinus communis] gi|223541004|gb|EEF42562.1| transcription factor, putative [Ricinus communis]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 192/282 (68%), Gaps = 32/282 (11%)

Query: 1   MERSAYV---SYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLM 57
           MER+A     +Y YENGV+MTRDPKPRLRWT DLH RFVDAVTKLGGPDKATPKSVLRLM
Sbjct: 1   MERAAAAFGGTYGYENGVVMTRDPKPRLRWTPDLHHRFVDAVTKLGGPDKATPKSVLRLM 60

Query: 58  GLKGLTLYHLKSHLQ-YRLGQQ-TRRQHGADQHKENNGGSSFVNFYNGSLATSM--TSSR 113
           GLKGLTLYHLKSHLQ YRLGQQ  R+Q+  +Q+KEN+G +S+VNF N S ++ +  TSS 
Sbjct: 61  GLKGLTLYHLKSHLQKYRLGQQQARKQNTKEQYKENSG-ASYVNFSNHSSSSGLHATSSS 119

Query: 114 GDEDQG--PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDS 171
               QG  PI+EALK Q EV  R +EQLEVQ++LQ+RIEAQGKYLQ +L+KAQKS S   
Sbjct: 120 NHNQQGEIPIAEALKSQIEVHTRFKEQLEVQKKLQVRIEAQGKYLQDLLEKAQKSFS-SL 178

Query: 172 SVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGD 231
            + G+ N + A             L+++ N ++RK N     D+      N S F V  +
Sbjct: 179 DMKGSCNLDLA-------------LIKNTNAEERKEN---LKDIF--AEPNYSVFHVSRE 220

Query: 232 CGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGL 273
              ++ N  D +HK++G S H DLNTKGSYDF  +  + + L
Sbjct: 221 AEMQKIN--DFEHKIEG-SIHLDLNTKGSYDFAAVNGSQLEL 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453324|ref|XP_004144408.1| PREDICTED: myb family transcription factor APL-like [Cucumis sativus] gi|449500083|ref|XP_004160999.1| PREDICTED: myb family transcription factor APL-like [Cucumis sativus]

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 148/274 (54%), Positives = 189/274 (68%), Gaps = 30/274 (10%)

Query: 1   MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLK 60
           MER+    YPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGP+KATPKSVLRLMGLK
Sbjct: 1   MERN----YPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLK 56

Query: 61  GLTLYHLKSHLQ-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG 119
           GLTLYHLKSHLQ YRLG QTR+Q+ A+Q  E++G  +  NF          S   ++D+G
Sbjct: 57  GLTLYHLKSHLQKYRLGLQTRKQNVAEQRNESSG--TLSNF----------SGVEEDDRG 104

Query: 120 -PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVN 178
             I+EALK   EVQ+ + EQLEVQ +LQMRIEAQGKYLQ IL+ AQKSL++  ++  N+ 
Sbjct: 105 MQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILENAQKSLAL--AINSNLG 162

Query: 179 A--EAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGERE 236
           +  ++   QL  F+ A+S+ +E   +Q+ +G+ T  ND+ KK    G S  +Q  C    
Sbjct: 163 SLDQSTEMQLINFDAALSDQIEKFKKQEIRGSITNLNDVCKK---TGDSL-IQI-CKMEA 217

Query: 237 GNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANG 270
             E  N+  ++    +FDLN+KG YD+   +ANG
Sbjct: 218 AEEDTNEFNIEKNMINFDLNSKGGYDY---SANG 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484737|ref|XP_003612656.1| Myb family transcription factor-related protein [Medicago truncatula] gi|355513991|gb|AES95614.1| Myb family transcription factor-related protein [Medicago truncatula]

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 156/274 (56%), Positives = 192/274 (70%), Gaps = 19/274 (6%)

Query: 13  NGVMMT--RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           +G+MMT  RDPKPRLRWT DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 59  DGMMMTMTRDPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 118

Query: 71  LQ-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPIS--EALKC 127
           LQ YRLGQ  R+Q+  +Q KENN   S+VNF N S  T+ T+  GD + G I   EAL+ 
Sbjct: 119 LQKYRLGQHARKQN-EEQFKENN-RCSYVNFSNHSSGTN-TNYGGDNEGGEIQIGEALRQ 175

Query: 128 QAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 187
           Q EVQ+RL+EQLEVQ +LQMRIEAQGKYLQA+L+KAQ SL  D    G  N +A++ QL 
Sbjct: 176 QIEVQKRLEEQLEVQNKLQMRIEAQGKYLQAVLEKAQTSLPQD----GPGNLDASKAQLA 231

Query: 188 TFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVD 247
            FN A++N ME+MN +D K N  + N+   K +A   +F  Q   G  E  E   K +V+
Sbjct: 232 EFNSALTNFMENMN-KDSKENILDMNEFHNKNHA--QAFNYQEVIGTEEHKEL--KPQVE 286

Query: 248 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 281
           GG+   DLN KG  + + ++A+G  +  S M+SY
Sbjct: 287 GGAVQLDLNIKGGNE-HLVSADGAEM-ESNMVSY 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225879090|dbj|BAH30615.1| hypothetical protein [Arabidopsis thaliana]

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/287 (52%), Positives = 187/287 (65%), Gaps = 21/287 (7%)

Query: 1   MERSAYVSYPYENG-VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGL 59
           MER       Y+NG VMMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGL
Sbjct: 1   MERVNLGGLGYDNGGVMMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGL 60

Query: 60  KGLTLYHLKSHLQ-YRLGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDED 117
           KGLTLYHLKSHLQ YRLGQQ  ++Q+  +Q+KE N GSS+V+F N S       SR D  
Sbjct: 61  KGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKE-NAGSSYVHFDNCSQGGISNDSRFDNH 119

Query: 118 QG-----PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSS 172
           Q      P +EA++ Q + QQR QEQLEVQ++LQMR+EAQGKYL  +L+KAQKSL     
Sbjct: 120 QRQSGNVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPC--- 176

Query: 173 VTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDC 232
             GN   E  + Q + FNLA+S L+ S  + ++ G  T+ + +   G  +   FR+   C
Sbjct: 177 --GNA-GETDKGQFSDFNLALSGLVGSDRKNEKAGLVTDISHL--NGGDSSQEFRL---C 228

Query: 233 GEREGNE-GDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 278
           GE+E  E GD   K + G  HFDLN+K  YD       GI + P+ +
Sbjct: 229 GEQEKIETGDACVKPESGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791167|ref|XP_002863468.1| hypothetical protein ARALYDRAFT_356449 [Arabidopsis lyrata subsp. lyrata] gi|297309303|gb|EFH39727.1| hypothetical protein ARALYDRAFT_356449 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 152/289 (52%), Positives = 191/289 (66%), Gaps = 25/289 (8%)

Query: 1   MERSAYVSYPYENG-VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGL 59
           MER       Y+NG VMMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGL
Sbjct: 1   MERVNLGGLGYDNGGVMMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGL 60

Query: 60  KGLTLYHLKSHLQ-YRLGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSR---G 114
           KGLTLYHLKSHLQ YRLGQQ  ++Q+  +Q+KE N GSS+V+F N S       SR   G
Sbjct: 61  KGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKE-NAGSSYVHFDNCSQGGISNESRFDSG 119

Query: 115 DEDQG---PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDS 171
           ++ Q    P +EA++ Q + QQR QEQLEVQ++LQMR+EAQGKYL  +L+KAQKS+    
Sbjct: 120 NQRQSGNVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSIPC-- 177

Query: 172 SVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSS-FRVQG 230
              GNV  E  + Q + FNLA+S L+ S ++ ++ G     + +    NA+ S  FR+  
Sbjct: 178 ---GNV-GETDKGQFSDFNLALSGLVGSDHKNEKVGLVANISHL----NADSSEDFRL-- 227

Query: 231 DCGEREGNE-GDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 278
            CGE+E  E GD   K + G  HFDLN+K  YD       GI + P+ +
Sbjct: 228 -CGEQEKIETGDACVKPESGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.890	0.950	0.490	2.4e-53
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.634	0.600	0.458	4.6e-34
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.634	0.606	0.425	1.4e-32
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.698	0.550	0.4	4.7e-32
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.624	0.446	0.408	1.2e-28
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.617	0.432	0.418	1.2e-28
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.531	0.638	0.423	4.5e-27
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.602	0.504	0.4	1.5e-26
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.521	0.513	0.414	8.7e-24
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.592	0.404	0.313	1.6e-17

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 133/271 (49%), Positives = 165/271 (60%)

Query:    16 MMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YR 74
             MMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGLKGLTLYHLKSHLQ YR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    75 LGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQ---G--PISEALKCQ 128
             LGQQ  ++Q+  +Q+KEN  GSS+V+F N S       SR D  Q   G  P +EA++ Q
Sbjct:    61 LGQQQGKKQNRTEQNKEN-AGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQ 119

Query:   129 AXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTT 188
                               MR+EAQGKYL  +L+KAQKSL       GN   E  + Q + 
Sbjct:   120 VDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPC-----GNAG-ETDKGQFSD 173

Query:   189 FNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNE-GDNKHKVD 247
             FNLA+S L+ S  + ++ G  T+ + +   G  +   FR+   CGE+E  E GD   K +
Sbjct:   174 FNLALSGLVGSDRKNEKAGLVTDISHL--NGGDSSQEFRL---CGEQEKIETGDACVKPE 228

Query:   248 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 278
              G  HFDLN+K  YD       GI + P+ +
Sbjct:   229 SGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 259

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/194 (45%), Positives = 123/194 (63%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P +  +++T DPKPRLRWT +LH+RFVDAVT+LGGPDKATPK+++R MG+KGLTLYHLKS
Sbjct:    29 PGDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKS 88

Query:    70 HLQ-YRLGQQTRRQHGADQHKENNGGSSFVNFYN--GSLATS-MTSSRGDEDQG-PISEA 124
             HLQ +RLG    RQ G +   EN+  +S V      GS +TS M  ++ ++++G  ++EA
Sbjct:    89 HLQKFRLG----RQAGKES-TENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEA 143

Query:   125 LKCQAXXXXXXXXXXXXXXXXX---MRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEA 181
             L+ Q                     +RIEAQGKYLQ+IL+KA K+   D         EA
Sbjct:   144 LRAQMEVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAF--DEQAATFAGLEA 201

Query:   182 ARDQLTTFNLAISN 195
             AR++L+   + +SN
Sbjct:   202 AREELSELAIKVSN 215

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 80/188 (42%), Positives = 120/188 (63%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P +  +++T DPKPRLRWT++LH+RFVDAVT+LGGPDKATPK+++R MG+KGLTLYHLKS
Sbjct:    25 PIDACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKS 84

Query:    70 HLQ-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQ 128
             HLQ +RLG+Q+ ++   D  K+ +  +   +  + S ++   +++   +   ++EAL+ Q
Sbjct:    85 HLQKFRLGRQSCKE-SIDNSKDVSCVAESQDTGSSSTSSLRLAAQEQNESYQVTEALRAQ 143

Query:   129 AXXXXXXXXXXXXXXXXX---MRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQ 185
                                  +RIEAQGKYLQ+IL+KA K+  ++         EAAR++
Sbjct:   144 MEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKA--IEEQAVAFAGLEAAREE 201

Query:   186 LTTFNLAI 193
             L+   LAI
Sbjct:   202 LS--ELAI 207

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 84/210 (40%), Positives = 124/210 (59%)

Query:    12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
             ++G+++T DPKPRLRWT +LH+RFVDAV +LGGPDKATPK+++R+MG+KGLTLYHLKSHL
Sbjct:    24 DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83

Query:    72 Q-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAX 130
             Q +RLG+Q  +++G    KE +  S+     N + ++ M S   +E Q  +   L  Q  
Sbjct:    84 QKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLE 143

Query:   131 XXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFN 190
                             +RIEAQGKY+Q+IL++A ++L+ ++       A AA       N
Sbjct:   144 VQRHLQ----------LRIEAQGKYMQSILERACQTLAGENMAAAT--AAAAVGGGYKGN 191

Query:   191 LAISNLMESMNEQDRKGNATEFNDMIKKGN 220
             L  S+L  ++       +   F D+   GN
Sbjct:   192 LGSSSLSAAVGPPPHPLSFPPFQDLNIYGN 221

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 74/181 (40%), Positives = 105/181 (58%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P ++G++++ D KPRL+WT DLH+RF++AV +LGG DKATPK+++++MG+ GLTLYHLKS
Sbjct:    33 PGDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKS 92

Query:    70 HLQ-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQ--GPISEALK 126
             HLQ YRL +    Q     +K            +     S   S G +     PI EAL+
Sbjct:    93 HLQKYRLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQ 152

Query:   127 CQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQL 186
              Q                  +RIEAQGKYLQ++L+KAQ++L   +   G    EAA+ QL
Sbjct:   153 MQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQN--LGAAGIEAAKVQL 210

Query:   187 T 187
             +
Sbjct:   211 S 211

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 75/179 (41%), Positives = 108/179 (60%)

Query:    12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
             ++G++++ D KPRL+WT DLH+RFV+AV +LGG DKATPK+++++MG+ GLTLYHLKSHL
Sbjct:    35 DSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHL 94

Query:    72 Q-YRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG--PISEALKCQ 128
             Q YRL +    Q  +  +K +       N      + S + S G +     PIS+AL+ Q
Sbjct:    95 QKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQ 154

Query:   129 AXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 187
                               +RIEAQGKYLQ+IL+KAQ++L   +   G    EA + QL+
Sbjct:   155 IEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQN--LGAAGIEATKAQLS 211

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 72/170 (42%), Positives = 104/170 (61%)

Query:    13 NGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72
             +G+++T DPKPRLRWT +LH+RFVDAVT LGGP+KATPK+++R+MG+KGLTLYHLKSHLQ
Sbjct:    14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

Query:    73 -YRLGQQTRRQHGADQH---KENNGGSSFVNFYNGSLATS-MTSSRG-DEDQGPISEALK 126
              +RLG+Q  ++H  +     ++ N  S      N    TS +   R  +E Q  +   ++
Sbjct:    74 KFRLGKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNEMQMEVQRRIE 133

Query:   127 CQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKA----QKSLSVDSS 172
              +                   RI AQGKY++++L+KA    + SL+ D S
Sbjct:   134 EEVVIERQVN----------QRIAAQGKYMESMLEKACETQEASLTKDYS 173

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 72/180 (40%), Positives = 106/180 (58%)

Query:    15 VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-Y 73
             ++++ D KPRL+WT DLH +F++AV +LGGP+KATPK ++++M + GLTLYHLKSHLQ Y
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    74 RLGQQTRRQHG---ADQHKENNGGSSFVNFYNGSLATSMTSSRGD--EDQG-PISEALKC 127
             RLG+  +            EN    S  N        S+T    +  +D+G  I+EAL+ 
Sbjct:    87 RLGKSMKFDDNKLEVSSASENQEVES-KNDSRDLRGCSVTEENSNPAKDRGLQITEALQM 145

Query:   128 QAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 187
             Q                  ++IEAQGKYLQ++L KAQ++L+  SS   N+  + AR +L+
Sbjct:   146 QMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSS--SNLGMDFARTELS 203

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 68/164 (41%), Positives = 94/164 (57%)

Query:    22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQTR 80
             K RLRWT +LH+RFVDAV +LGGPD+ATPK VLR+MG++GLT+YH+KSHLQ YRL +   
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL- 73

Query:    81 RQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAXXXXXXXXXXX 140
                 + + K+ +   S      G + + +  S G +    I+EALK Q            
Sbjct:    74 -PDSSSEGKKTDKKES------GDMLSGLDGSSGMQ----ITEALKLQMEVQKRLHEQLE 122

Query:   141 XXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARD 184
                   +RIEAQGKYL+ I+++ Q+     S V G  +A    D
Sbjct:   123 VQRQLQLRIEAQGKYLKKIIEEQQRL----SGVLGEPSAPVTGD 162

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 58/185 (31%), Positives = 93/185 (50%)

Query:    22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQ--- 77
             K R+RWT +LH+ FV+AV +LGG ++ATPK+VL+L+   GLT+YH+KSHLQ YR  +   
Sbjct:   231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query:    78 QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAXXXXXXXX 137
             +T    G  Q K+    +S  +  +  + TS+           I++AL+ Q         
Sbjct:   291 ETSEVTGEPQEKKM---TSIEDIKSLDMKTSVE----------ITQALRLQMEVQKRLHE 337

Query:   138 XXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLM 197
                      ++IE QG+YLQ + +K QK +  + S +   + +          + +  L 
Sbjct:   338 QLEIQRSLQLQIEKQGRYLQMMFEKQQK-IQDNKSSSSEASPKQCNGSFAEVEVGLETLT 396

Query:   198 ESMNE 202
                NE
Sbjct:   397 GDQNE 401

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	4e-22
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	2e-18
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	3e-08
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-06

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 86.7 bits (215), Expect = 4e-22
 Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQ 77
          KPR+ WT DLHDRF+ AV KLGGPD ATPK +L LM + GLT   + SHLQ YRL Q
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 76.9 bits (190), Expect = 2e-18
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query: 120 PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 168
            I+EAL+ Q EVQ+RL EQLEVQ  LQ+RIEAQGKYLQ IL+KAQK+LS
Sbjct: 3   QITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQTR 80
           K ++ WT +LH RFV AV +LG  +KA P  +L LMG++ LT +++ SHLQ YR    + 
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR----SH 289

Query: 81  RQHGADQHKE 90
           R+H A +  E
Sbjct: 290 RRHLAAREAE 299

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYRL 75
          R  WT +  +  ++AV K G  +      + + +   G T    K+     L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.92
PLN03162	526	golden-2 like transcription factor; Provisional	99.87
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.83
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.28
smart00426	68	TEA TEA domain.	91.36
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	91.01

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.92  E-value=1.5e-25  Score=162.52  Aligned_cols=49  Identities=73%  Similarity=0.965  Sum_probs=47.6

Q ss_pred             chHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhcc
Q 023406          120 PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS  168 (282)
Q Consensus       120 qI~EALr~QmEVQrrLhEQLEVQR~LQLRIEAQGKYLQsiLEKAqe~La  168 (282)
                      +|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         3 ~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    3 QITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999875

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.87  E-value=7.6e-23  Score=197.17  Aligned_cols=61  Identities=44%  Similarity=0.748  Sum_probs=57.7

Q ss_pred             ccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhhhh
Q 023406           17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQ   78 (282)
Q Consensus        17 ~s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~~~   78 (282)
                      ....+|+||+||+|||+|||+||++|| .++||||.||++|+|+|||++||||||| ||+.++
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            345689999999999999999999999 7999999999999999999999999999 999986

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.83  E-value=4.8e-21  Score=140.89  Aligned_cols=55  Identities=65%  Similarity=1.042  Sum_probs=53.3

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhh
Q 023406           22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLG   76 (282)
Q Consensus        22 K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~   76 (282)
                      |+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||..||+|||| ||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            799999999999999999999988999999999999999999999999999 9975

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.28  E-value=0.00071  Score=46.95  Aligned_cols=47  Identities=30%  Similarity=0.425  Sum_probs=40.1

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hh
Q 023406           24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YR   74 (282)
Q Consensus        24 RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YR   74 (282)
                      |-.||++=+..|++||.++|. +  .-+.|...|+ ++-|..++++|.+ |+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992 1  5899999998 8999999999988 74

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=91.36  E-value=0.23  Score=38.64  Aligned_cols=45  Identities=24%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCChh-HHHh---hhC-----------CCCC--CHHHHHhhhh
Q 023406           26 RWTADLHDRFVDAVTKLGGPDKATPK-SVLR---LMG-----------LKGL--TLYHLKSHLQ   72 (282)
Q Consensus        26 rWT~eLH~rFv~AV~~LGG~~kAtPK-~Il~---~M~-----------v~gL--T~~hVkSHLQ   72 (282)
                      .|.++|-..|++|+...-  ...+-| .+..   +.|           ..|.  |..||.||+|
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ   66 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ   66 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence            699999999999999876  223322 2221   111           1343  6788999998

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=91.01  E-value=0.46  Score=35.15  Aligned_cols=34  Identities=38%  Similarity=0.497  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhc
Q 023406          133 QRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSL  167 (282)
Q Consensus       133 rrLhEQLEVQR~LQLRIEAQGKYLQsiLEKAqe~L  167 (282)
                      .-|+.|+||||+|.=.+|.| |-||.-+|...+-|
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence            55788999999999999988 67777666655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		6e-07

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72
          T   KPR+ WT +LH++F+ AV  L G ++A PK +L LM +  LT  ++ SHLQ
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQ 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	3e-22

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 86.9 bits (215), Expect = 3e-22
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLG 76
          T   KPR+ WT +LH++F+ AV  L G ++A PK +L LM +  LT  ++ SHLQ +R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 77 QQ 78
           +
Sbjct: 60 LK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	89.25
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	88.19
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	87.54
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	83.99

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=1.4e-28  Score=184.31  Aligned_cols=60  Identities=43%  Similarity=0.783  Sum_probs=57.1

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhhhh
Q 023406           18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQ   78 (282)
Q Consensus        18 s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~~~   78 (282)
                      ++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||| ||+...
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 7999999999999999999999999999 999764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=89.25  E-value=1.3  Score=33.29  Aligned_cols=45  Identities=13%  Similarity=0.059  Sum_probs=37.3

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406           22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ   72 (282)
Q Consensus        22 K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ   72 (282)
                      ..+-.||++=+.+|++||...|+    .=+.|-+.|  ++=|..+++.|-+
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~   60 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFL   60 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHT
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHH
Confidence            34678999999999999999993    346777776  4789999999987

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=88.19  E-value=0.36  Score=37.56  Aligned_cols=55  Identities=25%  Similarity=0.312  Sum_probs=35.4

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhC-----------------CCCCCHHHHHhhhh-hhhh
Q 023406           20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG-----------------LKGLTLYHLKSHLQ-YRLG   76 (282)
Q Consensus        20 ~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~-----------------v~gLT~~hVkSHLQ-YRl~   76 (282)
                      +++..=+|.|+|-..|++|+...- +.. +-|-+|..-|                 -+-=|..+|.||+| -|-.
T Consensus         2 d~~~e~vW~~~lE~aF~eaL~~yp-~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~   74 (82)
T 2hzd_A            2 DNDAEGVWSPDIEQSFQEALSIYP-PCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR   74 (82)
T ss_dssp             CGGGSCCSCHHHHHHHHHHHHHSC-SSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcC-CCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence            345566899999999999999876 221 2222231111                 03346789999999 5543

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=87.54  E-value=1.5  Score=31.85  Aligned_cols=47  Identities=21%  Similarity=0.412  Sum_probs=38.7

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-h
Q 023406           21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-Y   73 (282)
Q Consensus        21 ~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-Y   73 (282)
                      .-.+-.||+|=++.|+++|..+|-    .=..|-..|  ||=|-.+||.|-+ |
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~   53 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQY   53 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            345668999999999999999992    446666654  7899999999998 5

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.99  E-value=1.9  Score=31.31  Aligned_cols=52  Identities=15%  Similarity=0.295  Sum_probs=38.8

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCCh---hHHHhhhCCCCCCHHHHHhhhh-hh
Q 023406           20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATP---KSVLRLMGLKGLTLYHLKSHLQ-YR   74 (282)
Q Consensus        20 ~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtP---K~Il~~M~v~gLT~~hVkSHLQ-YR   74 (282)
                      +...+=.||+|=+++|+++|..+| .+...|   +.|-+.|  +|=|..+++.|-+ |-
T Consensus         4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l   59 (75)
T 2yum_A            4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYF   59 (75)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            334556899999999999999999 333223   3455554  7899999999998 54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-20
d1vpka1	120	d.131.1.1 (A:1-120) DNA polymerase III, beta subun	0.004

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.7 bits (199), Expect = 2e-20
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRL 75
          T   KPR+ WT +LH++F+ AV  LG  ++A PK +L LM +  LT  ++ SHLQ +R+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 120

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 147 MRIEAQGKYLQAILQKAQKSLSVDSS--VTGNVNAEAARDQLTTFNLAISNLMESMNEQD 204
           M++      L+  +  A K+L+  S   +      E          +  ++L   +    
Sbjct: 1   MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFY---ICATDLETGVKATV 57

Query: 205 RKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDF 263
                +     +  G+      +V  D    E +   +   +  GST F + T  + +F
Sbjct: 58  NAAEISGEARFVVPGDVIQKMVKVLPD-EITELSLEGDALVISSGSTVFRITTMPADEF 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	89.69

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=9.6e-26  Score=166.92  Aligned_cols=60  Identities=43%  Similarity=0.775  Sum_probs=56.5

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhhhh
Q 023406           18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQ   78 (282)
Q Consensus        18 s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~~~   78 (282)
                      +.++|||++||+|||++||+||++||+ +.||||.|+++|+||+||+.||+|||| ||+...
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999985 899999999999999999999999999 999764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.32  Score=32.89  Aligned_cols=45  Identities=22%  Similarity=0.435  Sum_probs=37.4

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hh
Q 023406           24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YR   74 (282)
Q Consensus        24 RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YR   74 (282)
                      ..+||+|=+..|++||...|.    .=..|-.+|  |+=|..+|++|-+ |-
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~   47 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYF   47 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            468999999999999999992    456776765  5889999999988 53