Citrus Sinensis ID: 023424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MTIRTDKSREVLEVSRFCSPEMAASLTTPLSPKFSASNGRKPSNKIQRALTAFHQKGNECTRTPILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA
Secondary Structure (PSIPRED)
ccEEccccEEEEEEEEccccHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccEEEEccccccccccccccccEEEEcccccEEcEEEEcccccccccccccccEEEEEEcccccEEEEEEEcEEcccccccccccccccHHHHHHHHccccccccccccccEEEEEEEEccEEEEEEEEEEEccccccEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEcccEEEEEEEEcccHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccEHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEcccccEEEEEEcccccccccccccccEEEEEEEccccccEEEEEEEEEEccccccccHHHcccHHHHHHHHcHHHccccccHHHEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEccEEEEEEEEccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mtirtdksrevlevsrfcspemaaslttplspkfsasngrkpsnKIQRALTAFHQkgnectrtpILRREILKGLavipvtliinkeppysearevevgsylppsptdpsfvffkaspkdtpalragnvqpyqfvlppswkqMRVANIlsgnycqpkcaepwvevkfedekqgkvqvvasplirltnkpnasieeigspekviaslgpfvtgnsydpdeliETSVEKVGDQMYYNYLLEtpfaltgthnLAKATAKGSTVVLFVASANDKQWAGVTESFENHA
Flexible Loop (DISEMBL)
mtirtdksrevlevsrfcspemaaslttplspkfsasngrkpsNKIQRALTAfhqkgnectrtpILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQgkvqvvasplirltnkpnasieeigspekVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA
Low Complexity Region (SEG)
MTIRTDKSREVLEVSRFCSPEMAASLTTPLSPKFSASNGRKPSNKIQRALTAFHQKGNECTRTPILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA
Disordered region (IsUnstruct)
*************************************************LTAFHQKGNECTRTPILRREILKGLAVIPVTLIINKE***********************FVFFK*******ALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTN************EKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAG*********
Disordered Region (DISOPRED)
********REVLEVSRFCSPEMAASL*******************************************ILKGLAVIPVTL*******************LPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGV***FE***
Disordered Region (DISEMBL)
MTIRTDKSREVLEVSRFCSPEMAASLTTPLSPK***********KIQRALTAFHQKGNECTRTPILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGV********
Disordered Region (DISPRO)
MTIRTDKSREVLEVSRFCSPEMAASLTTP******************************CTRTPILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIRTDKSREVLEVSRFCSPEMAASLTTPLSPKFSASNGRKPSNKIQRALTAFHQKGNECTRTPILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q9LXX5	262	PsbP domain-containing pr	yes	no	0.751	0.809	0.780	2e-96
O49292	260	PsbP domain-containing pr	no	no	0.613	0.665	0.275	7e-12

>sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1

 Score =  352 bits (902), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/214 (78%), Positives = 187/214 (87%), Gaps = 2/214 (0%)

Query: 67  RREIL-KGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRA 125
           RRE+L K    IP  L + KE P S AREVEVGSYLP SP+DPSFV FKA P DTPALRA
Sbjct: 42  RRELLLKSAVAIPAILQL-KEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRA 100

Query: 126 GNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLT 185
           GNVQPYQFVLPP+WKQ+R+ANILSGNYCQPKCAEPW+EVKFE+EKQGKVQVVASPLIRLT
Sbjct: 101 GNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLT 160

Query: 186 NKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTG 245
           NKPNA+IE++G PEKVIASLGPFVTGNSYD DEL++TS+EK+GDQ YY Y+LETPFALTG
Sbjct: 161 NKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTG 220

Query: 246 THNLAKATAKGSTVVLFVASANDKQWAGVTESFE 279
           +HNLAKATAKGSTVVLFV SA +KQW    ++ E
Sbjct: 221 SHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLE 254

Arabidopsis thaliana (taxid: 3702)

>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 30/203 (14%)

Query: 72  KGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPY 131
           +GLAV+   L+  + P  SE  E    +Y  P            SP          + PY
Sbjct: 68  EGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGH-GVGWSP----------IIPY 116

Query: 132 QFVLPPSWKQMRVANI-LSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNK--P 188
            F +P  W ++ V+   L G           ++++F   K+G++ V+ +P++R  +    
Sbjct: 117 AFSVPQDWNEVPVSIADLGGTE---------IDLRFASPKEGRLSVIVAPVLRFADNLGD 167

Query: 189 NASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHN 248
           +  IE IG P KVI + GP V G + +  +++ ++V +   ++YY + LE P      H 
Sbjct: 168 DVKIENIGQPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFELEPP------HV 220

Query: 249 LAKATAKGSTVVLFVASANDKQW 271
           L  ATA G+ + LF  + N  QW
Sbjct: 221 LITATAAGNRLYLFSVTGNGLQW 243

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
255570482	260	Thylakoid lumenal 29.8 kDa protein, chlo	0.851	0.923	0.785	1e-103
224086769	257	predicted protein [Populus trichocarpa]	0.726	0.797	0.874	1e-103
363814543	265	uncharacterized protein LOC100813771 [Gl	0.758	0.807	0.813	1e-101
356571888	260	PREDICTED: psbP domain-containing protei	0.758	0.823	0.804	4e-99
225440155	264	PREDICTED: psbP domain-containing protei	0.868	0.928	0.731	5e-99
357509231	259	PsbP domain-containing protein [Medicago	0.723	0.787	0.819	5e-97
449459072	263	PREDICTED: psbP domain-containing protei	0.868	0.931	0.706	2e-96
297816988	262	thylakoid lumenal 20 kDa protein [Arabid	0.751	0.809	0.789	3e-96
15228983	262	PsbP domain-containing protein 6 [Arabid	0.751	0.809	0.780	1e-94
147864201	239	hypothetical protein VITISV_039682 [Viti	0.705	0.832	0.835	3e-94

>gi|255570482|ref|XP_002526199.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223534477|gb|EEF36178.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/247 (78%), Positives = 210/247 (85%), Gaps = 7/247 (2%)

Query: 27  TTPLSPKFSASNGRKPSNKIQ--RALTAFHQKGNECTRTPILRREILKGLAVIPVTLIIN 84
           T  LSP FS S   K   K      +TA   K N    T  LRR+ILKG+AV P+ LI  
Sbjct: 3   TASLSPFFSTSTSPKYPLKTSPPTTITAIVCK-NRSNST--LRRQILKGIAVSPLILI-- 57

Query: 85  KEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRV 144
           KE P SEA+EVEVGSYLP SP+DPSFV FKASPKDTPALRAGNVQPYQF+LPP+WKQ RV
Sbjct: 58  KEAPISEAKEVEVGSYLPSSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQARV 117

Query: 145 ANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIAS 204
           ANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNA+IEEIG+PEK+IAS
Sbjct: 118 ANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEEIGTPEKLIAS 177

Query: 205 LGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVA 264
           LGPFVTGNSYDPDEL+ETS+EK+GDQ YY Y+LETP+ALTGTHNLAKATAKGSTVVLFVA
Sbjct: 178 LGPFVTGNSYDPDELLETSIEKLGDQTYYKYVLETPYALTGTHNLAKATAKGSTVVLFVA 237

Query: 265 SANDKQW 271
           SANDKQW
Sbjct: 238 SANDKQW 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086769|ref|XP_002307956.1| predicted protein [Populus trichocarpa] gi|222853932|gb|EEE91479.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/207 (87%), Positives = 193/207 (93%), Gaps = 2/207 (0%)

Query: 65  ILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALR 124
           +LRR+ILKGL + P+ LI  K PP SEARE+EVGSYLPPSPTDPSFV FKAS KDTPALR
Sbjct: 37  VLRRQILKGLVLSPLILI--KAPPSSEAREIEVGSYLPPSPTDPSFVLFKASSKDTPALR 94

Query: 125 AGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL 184
           AGNVQPYQF+LPPSWKQ RVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL
Sbjct: 95  AGNVQPYQFILPPSWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL 154

Query: 185 TNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALT 244
           TNKPNA+IEEIG+PEK+IASLGPFVTGNSYDPDEL+ET +EK GDQ YY Y+LETPFALT
Sbjct: 155 TNKPNATIEEIGNPEKLIASLGPFVTGNSYDPDELLETKIEKFGDQTYYKYMLETPFALT 214

Query: 245 GTHNLAKATAKGSTVVLFVASANDKQW 271
           GTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 215 GTHNLAKATAKGSTVVLFVASANDKQW 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814543|ref|NP_001242704.1| uncharacterized protein LOC100813771 [Glycine max] gi|255636717|gb|ACU18694.1| unknown [Glycine max]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/214 (81%), Positives = 197/214 (92%)

Query: 66  LRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRA 125
           LRRE LKG+A++P+ L++ +EPP S AREVEVGS+LPPSP+DPSFV FKA+PKDTPA RA
Sbjct: 44  LRREFLKGVALMPLPLVVMREPPPSHAREVEVGSFLPPSPSDPSFVLFKATPKDTPAPRA 103

Query: 126 GNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLT 185
           GNVQPY+F+LPP+WKQ RVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLT
Sbjct: 104 GNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLT 163

Query: 186 NKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTG 245
           NKPNASIE+IGSPEK+IASLGPFVTGN+ DPDEL+ETSVEK+GDQ YY Y+LETP+ALTG
Sbjct: 164 NKPNASIEDIGSPEKLIASLGPFVTGNTLDPDELLETSVEKIGDQTYYKYVLETPYALTG 223

Query: 246 THNLAKATAKGSTVVLFVASANDKQWAGVTESFE 279
           THNLAKATAKG+TVVLFV SANDKQW    E+ +
Sbjct: 224 THNLAKATAKGNTVVLFVVSANDKQWQTSEETLK 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571888|ref|XP_003554103.1| PREDICTED: psbP domain-containing protein 6, chloroplastic-like [Glycine max]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 173/215 (80%), Positives = 198/215 (92%), Gaps = 1/215 (0%)

Query: 66  LRREILKGLA-VIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALR 124
           LRRE LKG+A ++P+ L++  EPP S+AREVEVGS+LPPSP+DPSFV FKAS KDTPALR
Sbjct: 38  LRREFLKGVAALMPLPLVVLIEPPPSDAREVEVGSFLPPSPSDPSFVLFKASAKDTPALR 97

Query: 125 AGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL 184
           AGNVQPY+F+LPP+WKQ RVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL
Sbjct: 98  AGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL 157

Query: 185 TNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALT 244
           TNKPNA+IE+IGSPEK+IASLGPFVTGN++DP+EL+ETSVEK+GDQ YY Y+LETP+ALT
Sbjct: 158 TNKPNATIEDIGSPEKLIASLGPFVTGNTFDPEELLETSVEKLGDQTYYKYVLETPYALT 217

Query: 245 GTHNLAKATAKGSTVVLFVASANDKQWAGVTESFE 279
           GTHNLAKATAKG+TVVLFV SANDKQW    E+ +
Sbjct: 218 GTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLK 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440155|ref|XP_002283307.1| PREDICTED: psbP domain-containing protein 6, chloroplastic [Vitis vinifera] gi|297741687|emb|CBI32819.3| unnamed protein product [Vitis vinifera]

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 185/253 (73%), Positives = 205/253 (81%), Gaps = 8/253 (3%)

Query: 22  MAASLTTPLSPKFS---ASNGRKPSNKIQRALTAFHQKGNECTRTPILRREILKGLAVIP 78
           MA +   PLS  FS     +  K +  I    + F    N+ T     RRE LKGLA+ P
Sbjct: 1   MATASFAPLSHVFSRLSHISSSKSATSILPHSSPFKNSPNQLT----FRREFLKGLALAP 56

Query: 79  VTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPS 138
           +  I  +  P + AREVEVGSYLP SP+DPSFV FKASPKDTPALRAGNVQPYQFVLPP+
Sbjct: 57  LIFISEEALP-AHAREVEVGSYLPTSPSDPSFVLFKASPKDTPALRAGNVQPYQFVLPPT 115

Query: 139 WKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSP 198
           WKQ RVANILSGNYCQPKCAEPWVEVKFEDE QGKVQVVASPLIRLTNKPNASIE+IGSP
Sbjct: 116 WKQTRVANILSGNYCQPKCAEPWVEVKFEDENQGKVQVVASPLIRLTNKPNASIEDIGSP 175

Query: 199 EKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGST 258
           EK+IASLGPFVTGN+YD DEL+ETSVEK+GDQ YY Y+LETPFALTG+HNLAKATAKG++
Sbjct: 176 EKLIASLGPFVTGNTYDSDELLETSVEKLGDQTYYKYVLETPFALTGSHNLAKATAKGNS 235

Query: 259 VVLFVASANDKQW 271
           VVLFVASANDKQW
Sbjct: 236 VVLFVASANDKQW 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509231|ref|XP_003624904.1| PsbP domain-containing protein [Medicago truncatula] gi|124361218|gb|ABN09190.1| hypothetical protein MtrDRAFT_AC183371g14v1 [Medicago truncatula] gi|355499919|gb|AES81122.1| PsbP domain-containing protein [Medicago truncatula]

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 168/205 (81%), Positives = 189/205 (92%), Gaps = 1/205 (0%)

Query: 67  RREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAG 126
           RRE LKG+A + + LI   EPP S+AREV VGS+LPPS +DPSFV FKASPKDTPALRAG
Sbjct: 40  RREFLKGIA-LSLPLIALTEPPQSQAREVSVGSFLPPSSSDPSFVLFKASPKDTPALRAG 98

Query: 127 NVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTN 186
           NVQPYQF+LPP+WKQ+R+ANILSGNYCQPKCAEPWVEVKFEDEKQGK+QVVASPLIRLTN
Sbjct: 99  NVQPYQFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTN 158

Query: 187 KPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGT 246
           KPNA+IE+IGSPEK+IASLGPFVTGN+ DPDEL+E SVEK+ DQ YY Y+LETP+ALTG+
Sbjct: 159 KPNATIEDIGSPEKLIASLGPFVTGNTLDPDELLEASVEKIDDQTYYKYVLETPYALTGS 218

Query: 247 HNLAKATAKGSTVVLFVASANDKQW 271
           HNLAKATAKG+TVVLFVASANDKQW
Sbjct: 219 HNLAKATAKGNTVVLFVASANDKQW 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459072|ref|XP_004147270.1| PREDICTED: psbP domain-containing protein 6, chloroplastic-like [Cucumis sativus] gi|449501207|ref|XP_004161307.1| PREDICTED: psbP domain-containing protein 6, chloroplastic-like [Cucumis sativus]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 178/252 (70%), Positives = 206/252 (81%), Gaps = 7/252 (2%)

Query: 22  MAASLTTPLSPKFSASNGRKPSNKIQRALTAFHQKGNECTRTPILRREILKGLAVIPVT- 80
           MA++    +SP F  S  R P NK   +  +     N     P  RREILK   ++P++ 
Sbjct: 1   MASASAFTISPSFPFSTSRTPKNKPISSSISSQ---NASQFVP--RREILKRFTLLPLSF 55

Query: 81  -LIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSW 139
            L  +  P  S ++E+EVGSYLPPSP+DPSFVFFKAS  DTPALRAGNVQPYQF+LPP+W
Sbjct: 56  PLFHSLNPLPSLSKEIEVGSYLPPSPSDPSFVFFKASQSDTPALRAGNVQPYQFILPPTW 115

Query: 140 KQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPE 199
           KQ RVANILSGNYCQPKCAEPWVEVKFED+KQGK+Q+VASPLIRLTNKPNA+IE+IGSPE
Sbjct: 116 KQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQIVASPLIRLTNKPNATIEDIGSPE 175

Query: 200 KVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTV 259
           KVIASLGPFVTG++YDP+EL+E+SVEK+GDQ YY Y LETP+ALTGTHNLAKATAKGSTV
Sbjct: 176 KVIASLGPFVTGSTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTV 235

Query: 260 VLFVASANDKQW 271
           VLFVASANDKQW
Sbjct: 236 VLFVASANDKQW 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816988|ref|XP_002876377.1| thylakoid lumenal 20 kDa protein [Arabidopsis lyrata subsp. lyrata] gi|297322215|gb|EFH52636.1| thylakoid lumenal 20 kDa protein [Arabidopsis lyrata subsp. lyrata]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/214 (78%), Positives = 189/214 (88%), Gaps = 2/214 (0%)

Query: 67  RREIL-KGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRA 125
           RRE+L K    IP  L + KE P SEAREVEVGSYLPPSP+DPSFV FKA P DTPALRA
Sbjct: 42  RRELLLKSAVAIPAILQL-KEAPISEAREVEVGSYLPPSPSDPSFVLFKAKPSDTPALRA 100

Query: 126 GNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLT 185
           GNVQPYQFVLPP+WKQ+R+ANILSGNYCQPKCAEPW+EVKFE+EKQGKVQVVASPLIRLT
Sbjct: 101 GNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLT 160

Query: 186 NKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTG 245
           NKPNA+IE+IG PEKVIASLGPFVTGNSYD DEL++TS+EK+GDQ YY Y+LETPFALTG
Sbjct: 161 NKPNATIEDIGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTG 220

Query: 246 THNLAKATAKGSTVVLFVASANDKQWAGVTESFE 279
           +HNLAKATAKG+TVVLFV SA +KQW    ++ E
Sbjct: 221 SHNLAKATAKGNTVVLFVVSATEKQWQSSQKTLE 254

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228983|ref|NP_191224.1| PsbP domain-containing protein 6 [Arabidopsis thaliana] gi|75180968|sp|Q9LXX5.1|PPD6_ARATH RecName: Full=PsbP domain-containing protein 6, chloroplastic; AltName: Full=OEC23-like protein 1; Flags: Precursor gi|7594543|emb|CAB88068.1| putative protein [Arabidopsis thaliana] gi|222424215|dbj|BAH20066.1| AT3G56650 [Arabidopsis thaliana] gi|332646027|gb|AEE79548.1| PsbP domain-containing protein 6 [Arabidopsis thaliana]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 167/214 (78%), Positives = 187/214 (87%), Gaps = 2/214 (0%)

Query: 67  RREIL-KGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRA 125
           RRE+L K    IP  L + KE P S AREVEVGSYLP SP+DPSFV FKA P DTPALRA
Sbjct: 42  RRELLLKSAVAIPAILQL-KEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRA 100

Query: 126 GNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLT 185
           GNVQPYQFVLPP+WKQ+R+ANILSGNYCQPKCAEPW+EVKFE+EKQGKVQVVASPLIRLT
Sbjct: 101 GNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLT 160

Query: 186 NKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTG 245
           NKPNA+IE++G PEKVIASLGPFVTGNSYD DEL++TS+EK+GDQ YY Y+LETPFALTG
Sbjct: 161 NKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTG 220

Query: 246 THNLAKATAKGSTVVLFVASANDKQWAGVTESFE 279
           +HNLAKATAKGSTVVLFV SA +KQW    ++ E
Sbjct: 221 SHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLE 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864201|emb|CAN83026.1| hypothetical protein VITISV_039682 [Vitis vinifera]

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 167/200 (83%), Positives = 183/200 (91%), Gaps = 1/200 (0%)

Query: 72  KGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPY 131
           + LA+ P+  I  +  P + AREVEVGSYLP SP+DPSFV FKASPKDTPALRAGNVQPY
Sbjct: 25  RRLALAPLIFISEEALP-AHAREVEVGSYLPTSPSDPSFVLFKASPKDTPALRAGNVQPY 83

Query: 132 QFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNAS 191
           QFVLPP+WKQ RVANILSGNYCQPKCAEPWVEVKFEDE QGKVQVVASPLIRLTNKPNAS
Sbjct: 84  QFVLPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDENQGKVQVVASPLIRLTNKPNAS 143

Query: 192 IEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAK 251
           IE+IGSPEK+IASLGPFVTGN+YD DEL+ETSVEK+GDQ YY Y+LETPFALTG+HNLAK
Sbjct: 144 IEDIGSPEKLIASLGPFVTGNTYDSDELLETSVEKLGDQTYYKYVLETPFALTGSHNLAK 203

Query: 252 ATAKGSTVVLFVASANDKQW 271
           ATAKG++VVLFVASANDKQW
Sbjct: 204 ATAKGNSVVLFVASANDKQW 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2102544	262	PPD6 "PsbP-domain protein 6" [	0.897	0.965	0.687	6.5e-90
TAIR|locus:2025292	260	AT1G77090 [Arabidopsis thalian	0.450	0.488	0.298	1.6e-11

TAIR|locus:2102544 PPD6 "PsbP-domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 178/259 (68%), Positives = 203/259 (78%)

Query:    22 MAASLTTPLSPKFSASNGRKPSNKIQ-RALTAFHQKGNECTRTPILRREILKGLAVIPVT 80
             MA +   P S  FS S     S K + R + A  Q+  +    P  R  +LK    IP  
Sbjct:     1 MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQ----PRRRELLLKSAVAIPAI 56

Query:    81 LIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWK 140
             L + KE P S AREVEVGSYLP SP+DPSFV FKA P DTPALRAGNVQPYQFVLPP+WK
Sbjct:    57 LQL-KEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWK 115

Query:   141 QMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEK 200
             Q+R+ANILSGNYCQPKCAEPW+EVKFE+EKQGKVQVVASPLIRLTNKPNA+IE++G PEK
Sbjct:   116 QLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEK 175

Query:   201 VIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVV 260
             VIASLGPFVTGNSYD DEL++TS+EK+GDQ YY Y+LETPFALTG+HNLAKATAKGSTVV
Sbjct:   176 VIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVV 235

Query:   261 LFVASANDKQWAGVTESFE 279
             LFV SA +KQW    ++ E
Sbjct:   236 LFVVSATEKQWQSSQKTLE 254

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TAIR|locus:2025292 AT1G77090 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 43/144 (29%), Positives = 75/144 (52%)

Query:   130 PYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNK-- 187
             PY F +P  W ++ V+    G        E  ++++F   K+G++ V+ +P++R  +   
Sbjct:   115 PYAFSVPQDWNEVPVSIADLGG------TE--IDLRFASPKEGRLSVIVAPVLRFADNLG 166

Query:   188 PNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTH 247
              +  IE IG P KVI + GP V G + +  +++ ++V +   ++YY + LE P      H
Sbjct:   167 DDVKIENIGQPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFELEPP------H 219

Query:   248 NLAKATAKGSTVVLFVASANDKQW 271
              L  ATA G+ + LF  + N  QW
Sbjct:   220 VLITATAAGNRLYLFSVTGNGLQW 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      282       282   0.00083  115 3  11 23  0.42    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  202 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.16u 0.09s 25.25t   Elapsed:  00:00:01
  Total cpu time:  25.16u 0.09s 25.25t   Elapsed:  00:00:01
  Start:  Mon May 20 22:35:30 2013   End:  Mon May 20 22:35:31 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LXX5	PPD6_ARATH	No assigned EC number	0.7803	0.7517	0.8091	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
PLN00067	263	PLN00067, PLN00067, PsbP domain-containing protein	1e-140
PLN00066	262	PLN00066, PLN00066, PsbP domain-containing protein	1e-21
pfam01789	163	pfam01789, PsbP, PsbP	2e-09
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	5e-04

>gnl|CDD|177697 PLN00067, PLN00067, PsbP domain-containing protein 6; Provisional

 Score =  395 bits (1017), Expect = e-140
 Identities = 185/254 (72%), Positives = 208/254 (81%), Gaps = 9/254 (3%)

Query: 22  MAASLTTPLSPKFSAS---NGRKPSNKIQRALTAFHQKGNECTRTPILRREILKGLAVIP 78
           MA +  +PLS  FS S   +    ++      ++   +        I RRE+L GLA+ P
Sbjct: 1   MATASLSPLSLSFSVSSSTSASSSASSPLAVASSVSPRAA----VVIHRRELLLGLALAP 56

Query: 79  VTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPS 138
           + LI     P +EAREVEVGSYLPPSP+DPSFV FKASPKDTPALRAGNVQPYQF+LPP+
Sbjct: 57  LILI--APEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPT 114

Query: 139 WKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSP 198
           WKQ RVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNA+IEEIGSP
Sbjct: 115 WKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEEIGSP 174

Query: 199 EKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGST 258
           EK+IASLGPFVTGNSYDPDEL+ETSVEK+GDQ YY Y+LETPFALTG+HNLAKATAKG+T
Sbjct: 175 EKLIASLGPFVTGNSYDPDELLETSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNT 234

Query: 259 VVLFVASANDKQWA 272
           VVLFV SA+DKQW 
Sbjct: 235 VVLFVVSASDKQWQ 248

Length = 263

>gnl|CDD|215046 PLN00066, PLN00066, PsbP domain-containing protein 4; Provisional

 Score = 91.0 bits (226), Expect = 1e-21
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 23/147 (15%)

Query: 130 PYQFVLPPSWKQMRVANILSGNYCQPKCAEPW---VEVKFEDEKQGKVQVVASPLIRLTN 186
           PY F +P  W+++ V+            A+     ++++F  +K+G+++VV +P++R  +
Sbjct: 114 PYSFKVPQGWEEVPVS-----------IADLGGTEIDLRFASDKEGRLKVVVAPVLRFAD 162

Query: 187 K--PNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALT 244
               NA+IEEIG PEKVI+  GP + G   +  +++   V +   + YY + L       
Sbjct: 163 NLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSMEVAEHSGRTYYQFELP------ 216

Query: 245 GTHNLAKATAKGSTVVLFVASANDKQW 271
             H L  ATA G+ V +F  +AN  QW
Sbjct: 217 -PHTLVTATAAGNRVYIFSVTANGLQW 242

Length = 262

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 26/156 (16%)

Query: 131 YQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKP 188
           Y+F+ P  W +  V++   G            +V F D  E    V VV SP     +K 
Sbjct: 20  YEFLYPTGWWREVVSD---GP-----------DVVFHDLIESDENVSVVISP----VDK- 60

Query: 189 NASIEEIGSPEKVIASLGPFVTG--NSYDPDELIETSVEKVGDQMYYN--YLLETPFALT 244
             S+E++GSPE+V   L   V     S    EL+E S  +V  + YY+  YL+       
Sbjct: 61  KKSLEDLGSPEEVGERLLRGVLAPEGSGREAELLEASEREVDGKTYYDLEYLVRLA-DGG 119

Query: 245 GTHNLAKATAKGSTVVLFVASANDKQWAGVTESFEN 280
             H LA  T     +    A  N+K+W  V + FE 
Sbjct: 120 DRHELATVTVDRGKLYTLAAQTNEKRWFKVKKLFER 155

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 26/132 (19%)

Query: 160 PWVEVKFED--EKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSY--- 214
           P   ++FED  +    + V+ +P    T+K   SI + GSPE+ ++ +   +   +Y   
Sbjct: 117 PGQVLRFEDNFDATSNLSVMVTP----TDK--KSITDYGSPEEFLSKVSYLLGKQAYSGE 170

Query: 215 -------DPDE-----LIETSVEKVGDQMYYNYLLETPFA---LTGTHNLAKATAKGSTV 259
                  D +      ++E+S ++VG + YY   + T  A     G H L  AT     +
Sbjct: 171 TASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKL 230

Query: 260 VLFVASANDKQW 271
            +  A A DK+W
Sbjct: 231 YICKAQAGDKRW 242

Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.3
PRK11615	185	hypothetical protein; Provisional	86.47

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=5.8e-67  Score=477.13  Aligned_cols=217  Identities=81%  Similarity=1.276  Sum_probs=206.7

Q ss_pred             cchhHHHHHHhhhhhHhhhhcCCCCccccccccccccCCCCCCCCCceEEecCCCCCccccCCCCCCeEEEcCCCCccce
Q 023424           64 PILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMR  143 (282)
Q Consensus        64 ~~sRR~~L~~~a~~aa~~~~~~~~~~a~A~~~~~g~~~p~~~~~~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~  143 (282)
                      .++||++|+|+++..+  ++...++++.|.|+++|.|||+.++++||+.|.+++++||+||+|++.||+|+||+||++++
T Consensus        42 ~~~rr~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~  119 (263)
T PLN00067         42 VIHRRELLLGLALAPL--ILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTR  119 (263)
T ss_pred             hhHHHHHHhhhhhhhh--hhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcc
Confidence            5789999999887753  33445678999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCcCCCCCCCCcceEEEeeCCCceEEEEEecCcccCCCCCCCccccCCHHHHHHhhcccccCCCCCCCceEEee
Q 023424          144 VANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETS  223 (282)
Q Consensus       144 v~~~~sG~~~~p~~~~~~~dv~F~d~~~enVsVvVsP~~~L~~~~~~sI~dlGspeev~~~l~~~~~~~~~~~a~Ll~a~  223 (282)
                      |+++++||||||+|+|||+|++|+|+.+|||+|||+|+.+|+++++++|+|||+|++|+++|++.++++++++++||+++
T Consensus       120 Vs~~~sGnycqp~c~~p~~dv~F~D~~dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eLLeAs  199 (263)
T PLN00067        120 VANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDELLETS  199 (263)
T ss_pred             ccccccCccccccccCCCceEEEeCCCCCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcceEEee
Confidence            99999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             EEEeCCeEEEEEEEEeccCCCCceEEEEEEEeCCeEEEEEeeeCcccccchhhhccccC
Q 023424          224 VEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA  282 (282)
Q Consensus       224 ~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~GkLYtl~a~a~ekrW~k~~~~lr~~a  282 (282)
                      +++.||++||+|||.+++++++||+|+++||++||||||++++||+||+|+++.|++|+
T Consensus       200 ~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l~~V~  258 (263)
T PLN00067        200 VEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAIL  258 (263)
T ss_pred             eEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999874

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.8e-49  Score=363.00  Aligned_cols=206  Identities=26%  Similarity=0.375  Sum_probs=169.9

Q ss_pred             cccCCCCCchhhhhhhhhhccCCCCCCCCcchhHHHHHHhhhhhHhhhhcCCCCccccccccccccCCCCCCCCCceEEe
Q 023424           35 SASNGRKPSNKIQRALTAFHQKGNECTRTPILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFK  114 (282)
Q Consensus        35 ~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~~sRR~~L~~~a~~aa~~~~~~~~~~a~A~~~~~g~~~p~~~~~~gf~~y~  114 (282)
                      ++.+..++++..||++     +.   ....++||.+|+.+++++|  +++...|+.+|++ +.+++|+++++++||.+|.
T Consensus        28 ~~~~~~~~~~~~~~~~-----~~---~~~~~srr~~l~~~~ga~a--~~~~~~pa~aay~-~~anvfg~~k~~~gF~~y~   96 (260)
T PLN00042         28 RAVSASRPSQVVCRAQ-----EE---DNSAVSRRAALALLAGAAA--AGAKVSPANAAYG-ESANVFGKPKTNTGFLPYN   96 (260)
T ss_pred             cccCCCCCcceeeecc-----cc---ccccccHHHHHHHHHHHHH--hhcccCchhhhhc-chhhccCCCCCCCCCeEee
Confidence            3345555555555553     22   1235889999877776654  4566677777775 6789999999999999998


Q ss_pred             cCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecCcccCCCCCCCc
Q 023424          115 ASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKPNASI  192 (282)
Q Consensus       115 ~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~~~L~~~~~~sI  192 (282)
                      +             |||+|+||++|+++++.+            +||+|++|+|  +.++||+|+|+|++      +++|
T Consensus        97 ~-------------dgY~FlyP~~W~~~ke~~------------~~G~dv~f~D~~~~~eNVSV~Ispt~------k~sI  145 (260)
T PLN00042         97 G-------------DGFKLLVPSKWNPSKERE------------FPGQVLRFEDNFDATSNLSVMVTPTD------KKSI  145 (260)
T ss_pred             C-------------CCeEEecCCCCccccccc------------cCCceEEeeccccccccEEEEEecCC------cCCH
Confidence            5             999999999999998765            6789999999  89999999999998      6899


Q ss_pred             cccCCHHH----HHHhhcccccCCC-----C------CCCceEEeeEEEeCCeEEEEEEEEeccCC---CCceEEEEEEE
Q 023424          193 EEIGSPEK----VIASLGPFVTGNS-----Y------DPDELIETSVEKVGDQMYYNYLLETPFAL---TGTHNLAKATA  254 (282)
Q Consensus       193 ~dlGspee----v~~~l~~~~~~~~-----~------~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~---~~rH~LasatV  254 (282)
                      +|||+|||    |++.|+++++.++     +      .+++||+++++++||++||+|||.+++++   ++||+|+++||
T Consensus       146 ~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV  225 (260)
T PLN00042        146 TDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATV  225 (260)
T ss_pred             hhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEE
Confidence            99999999    6667777776522     2      36799999999999999999999999997   78999999999


Q ss_pred             eCCeEEEEEeeeCcccccch-hhhccccC
Q 023424          255 KGSTVVLFVASANDKQWAGV-TESFENHA  282 (282)
Q Consensus       255 ~~GkLYtl~a~a~ekrW~k~-~~~lr~~a  282 (282)
                      ++||||||++|+||+||+|+ ++.|++++
T Consensus       226 ~~GkLYtl~aqa~EkRW~K~~~k~l~~v~  254 (260)
T PLN00042        226 SDGKLYICKAQAGDKRWFKGARKFVEGAA  254 (260)
T ss_pred             ECCEEEEEEecCchhhhhHHHHHHHHHHH
Confidence            99999999999999999999 44677663

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=1.8e-48  Score=358.11  Aligned_cols=210  Identities=26%  Similarity=0.481  Sum_probs=182.8

Q ss_pred             CCCCCCcchhHHHHHHhhhhhHhhhhcCCCCcccc-ccccccccCCC-CCCCCCceEEecCCCCC--ccccCCCCCCeEE
Q 023424           58 NECTRTPILRREILKGLAVIPVTLIINKEPPYSEA-REVEVGSYLPP-SPTDPSFVFFKASPKDT--PALRAGNVQPYQF  133 (282)
Q Consensus        58 ~~~~~~~~sRR~~L~~~a~~aa~~~~~~~~~~a~A-~~~~~g~~~p~-~~~~~gf~~y~~~~~~t--p~~~~~~~dgY~F  133 (282)
                      ++++...++||.+|+++++++...+++...+..+| +++.+|++++. .++..||..|+.++.++  +|++|..+.+|+|
T Consensus        38 ~~~~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F  117 (262)
T PLN00066         38 TEDVATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSF  117 (262)
T ss_pred             hhhhcchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEE
Confidence            55566788999999876666322222332333334 89999998775 56678999999988888  8999999999999


Q ss_pred             EcCCCCccceeccccCCCcCCCCCCCCcceEEEeeCCCceEEEEEecCcccCCC--CCCCccccCCHHHHHHhhcccccC
Q 023424          134 VLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNK--PNASIEEIGSPEKVIASLGPFVTG  211 (282)
Q Consensus       134 ~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d~~~enVsVvVsP~~~L~~~--~~~sI~dlGspeev~~~l~~~~~~  211 (282)
                      +||+||++++|+++..|        -+++|++|.|+.++||+|+|+|+.||+++  ++++|+|||+||+|++.|++++++
T Consensus       118 ~yP~GW~ev~VS~~d~g--------g~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g  189 (262)
T PLN00066        118 KVPQGWEEVPVSIADLG--------GTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIG  189 (262)
T ss_pred             ECCCCCeEeecccccCC--------CCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcC
Confidence            99999999999988544        14899999999999999999999999876  899999999999999999999999


Q ss_pred             CCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCceEEEEEEEeCCeEEEEEeeeCcccccchhhhccccC
Q 023424          212 NSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA  282 (282)
Q Consensus       212 ~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~GkLYtl~a~a~ekrW~k~~~~lr~~a  282 (282)
                      .+.++++|+++++++.+|++||+|||       .+|+|++|||++||||+|++++||+||+|++++|++|+
T Consensus       190 ~~~~e~eLl~a~~re~dGktYY~~E~-------~rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~  253 (262)
T PLN00066        190 EPVEEGKVLSMEVAEHSGRTYYQFEL-------PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIA  253 (262)
T ss_pred             CCccccceeEeeeeecCCcEEEEEEE-------eCceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHh
Confidence            88899999999999999999999999       27999999999999999999999999999999999874

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=2.5e-41  Score=309.35  Aligned_cols=179  Identities=18%  Similarity=0.226  Sum_probs=147.9

Q ss_pred             CCCcchhHHHHHHhhhhhHhhhhcCC-CCccccccccccccCCCCCCCCCceEEecCCCCCccccCCCCCCeEEEcCCCC
Q 023424           61 TRTPILRREILKGLAVIPVTLIINKE-PPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSW  139 (282)
Q Consensus        61 ~~~~~sRR~~L~~~a~~aa~~~~~~~-~~~a~A~~~~~g~~~p~~~~~~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW  139 (282)
                      ..+.+.||.++ .++++.++++.+.+ .++++|+             .+||..|.+           ..|||+|+||.||
T Consensus        73 ~~~~~~rr~~~-~~~l~~~~~~~s~~~~~~a~a~-------------~~~l~~y~D-----------~~DGY~FlYP~GW  127 (286)
T PLN00059         73 QVCAVGRRKSM-MMGLLMSGLIVSEANLPTAFAS-------------IPVFREYID-----------TFDGYSFKYPQNW  127 (286)
T ss_pred             hhhhhhhhhhh-HHHHHHHHHHHHhhcCchhhcC-------------CcccceeEc-----------CCCCeEEeCCCCC
Confidence            44678999886 23333333443332 2344442             138999995           5699999999999


Q ss_pred             ccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecCcccCCCCCCCccccCCHHHHHHhhcccccC------
Q 023424          140 KQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTG------  211 (282)
Q Consensus       140 ~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~~~L~~~~~~sI~dlGspeev~~~l~~~~~~------  211 (282)
                      .++...               |+|++|+|  +.+|||+|+|+|+..   .++++|+|||+|+||+++|++++++      
T Consensus       128 i~V~~~---------------G~DVvFrD~Ie~~ENVSV~ISs~ss---s~~~sLeDLGsP~eVgerLlkqvLa~f~str  189 (286)
T PLN00059        128 IQVRGA---------------GADIFFRDPVVLDENLSVEFSSPSS---SKYTSLEDLGSPEEVGKRVLRQYLTEFMSTR  189 (286)
T ss_pred             eEeccC---------------CCceEEeccCccccceEEEEecCCc---ccCCChHHcCCHHHHHHHHHHHHhccccccc
Confidence            999843               49999999  999999999998761   1279999999999999999999887      


Q ss_pred             -CCCCCCceEEeeEEEe-CCeEEEEEEEEeccC-----------------CCCceEEEEEEEeCCeEEEEEeeeCccccc
Q 023424          212 -NSYDPDELIETSVEKV-GDQMYYNYLLETPFA-----------------LTGTHNLAKATAKGSTVVLFVASANDKQWA  272 (282)
Q Consensus       212 -~~~~~a~Ll~a~~r~~-dG~tYY~yE~~~~~~-----------------~~~rH~LasatV~~GkLYtl~a~a~ekrW~  272 (282)
                       +++++++||++++|+. ||++||+|||.+.+.                 +|.||+|++++|.+||||||++|+||+||.
T Consensus       190 ~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~  269 (286)
T PLN00059        190 LGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFL  269 (286)
T ss_pred             CCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHH
Confidence             3468999999999977 999999999999984                 469999999999999999999999999999


Q ss_pred             chhhhccccC
Q 023424          273 GVTESFENHA  282 (282)
Q Consensus       273 k~~~~lr~~a  282 (282)
                      |+++.|++++
T Consensus       270 kvk~~f~~V~  279 (286)
T PLN00059        270 EEEKDLRRVM  279 (286)
T ss_pred             HHHHHHHHHH
Confidence            9999999873

>PLN03152 hypothetical protein; Provisional

Probab=100.00  E-value=7.9e-39  Score=286.33  Aligned_cols=203  Identities=18%  Similarity=0.224  Sum_probs=163.3

Q ss_pred             CCCCcchhHHHHHHhhhhhHhhhhcC-CCCcccccccc-ccccCCCCCCCCCceEEecCCCCCccccCCCCCCeEEEcCC
Q 023424           60 CTRTPILRREILKGLAVIPVTLIINK-EPPYSEAREVE-VGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPP  137 (282)
Q Consensus        60 ~~~~~~sRR~~L~~~a~~aa~~~~~~-~~~~a~A~~~~-~g~~~p~~~~~~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~  137 (282)
                      .+.|..+||+++++++.+++..+.+. ..+++.|.... ...++....++..|++|++             +||++.||+
T Consensus        26 ~~~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g-------------~gf~~~~pp   92 (241)
T PLN03152         26 LSRCGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYG-------------DGFSIRVPP   92 (241)
T ss_pred             cccccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhC-------------CceEEeCCC
Confidence            36788999999999998886543322 12344443222 2334556778889999997             999999999


Q ss_pred             CCccceeccc-cCC-CcCCCCCCCCcceEEEee-CCCceEEEEEecCcccC--CCCCCCccccCCHHHHHHhhcccccCC
Q 023424          138 SWKQMRVANI-LSG-NYCQPKCAEPWVEVKFED-EKQGKVQVVASPLIRLT--NKPNASIEEIGSPEKVIASLGPFVTGN  212 (282)
Q Consensus       138 gW~~~~v~~~-~sG-~~~~p~~~~~~~dv~F~d-~~~enVsVvVsP~~~L~--~~~~~sI~dlGspeev~~~l~~~~~~~  212 (282)
                      +|+++.+.+. ..| .++.++.+.....+||.+ |++|||||+|+|+++||  +.++++|+|||+|+||++.|+|.-  +
T Consensus        93 ~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~vP~g--~  170 (241)
T PLN03152         93 SFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFVPGG--A  170 (241)
T ss_pred             ChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhCCCc--c
Confidence            9999987654 445 677778777889999999 99999999999999876  789999999999999999998731  1


Q ss_pred             CCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCceEEEEEEEeCCeEEEEEeeeCcccccchhhhccccC
Q 023424          213 SYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA  282 (282)
Q Consensus       213 ~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~GkLYtl~a~a~ekrW~k~~~~lr~~a  282 (282)
                      ....+.+++. +++.||++||+|||.++    +||+|++|||++||||||+++++|+||+|++++|++++
T Consensus       171 ~~~saR~iel-~~E~dGKtYY~lEy~v~----~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~kfr~aa  235 (241)
T PLN03152        171 TLYSARTIKV-KEEEGIRTYYFYEFGRD----EQHVALVATVNSGKAYIAGATAPESKWDDDGVKLRSAA  235 (241)
T ss_pred             cccccceeee-eeecCCceeEEEEEEeC----CcEEEEEEEEcCCeEEEEecCCchhchHHHHHHHHHHH
Confidence            0112344444 45889999999999986    89999999999999999999999999999999999874

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=2.5e-36  Score=262.27  Aligned_cols=145  Identities=28%  Similarity=0.454  Sum_probs=129.4

Q ss_pred             CCCceEEecCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecCccc
Q 023424          107 DPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRL  184 (282)
Q Consensus       107 ~~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~~~L  184 (282)
                      ..||.+|.++           .+||+|.||.+|+++.+.               |+|++|+|  +.++||+|+|+|+.+ 
T Consensus        20 ~~~~~~y~d~-----------~~~y~f~~P~gW~~~~~~---------------G~~v~f~d~~~~~~nvsV~v~p~~~-   72 (175)
T PF01789_consen   20 STGFQPYTDS-----------DDGYSFLYPSGWEEVDVS---------------GADVVFRDPIDADENVSVVVSPVPK-   72 (175)
T ss_dssp             -SSEEEEEEC-----------TTTEEEEEETTEEEEEST---------------TEEEEEEETTETTSEEEEEEEE-ST-
T ss_pred             CCCceEEEcC-----------CCCEEEECCCCCeecCCC---------------CeEEEEECcccccceEEEEEEecCC-
Confidence            4799999863           489999999999888763               49999999  789999999999994 


Q ss_pred             CCCCCCCccccCCHHHHHHhhcccccCCCC--CCCceEEeeEEEeCCeEEEEEEEEeccCC-CCceEEEEEEEeCCeEEE
Q 023424          185 TNKPNASIEEIGSPEKVIASLGPFVTGNSY--DPDELIETSVEKVGDQMYYNYLLETPFAL-TGTHNLAKATAKGSTVVL  261 (282)
Q Consensus       185 ~~~~~~sI~dlGspeev~~~l~~~~~~~~~--~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~-~~rH~LasatV~~GkLYt  261 (282)
                          .++|+|||+|++|+++|++..++..+  +.++||++.+++.+|++||+|||.++.++ +.||+|+++||.+||||+
T Consensus        73 ----~~sl~~lGs~~~va~~l~~~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~  148 (175)
T PF01789_consen   73 ----DFSLEDLGSPEEVAERLLNGELASPGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYT  148 (175)
T ss_dssp             ----S-SGGGG-SHHHHHHHHHHHCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEE
T ss_pred             ----cCchhhcCCHHHHHHHHhhhhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEE
Confidence                55999999999999999998877443  88999999999999999999999999988 889999999999999999


Q ss_pred             EEeeeCcccccchhhhccccC
Q 023424          262 FVASANDKQWAGVTESFENHA  282 (282)
Q Consensus       262 l~a~a~ekrW~k~~~~lr~~a  282 (282)
                      |+++++|+||+|++++|++|+
T Consensus       149 l~~~a~e~~w~k~~~~l~~iv  169 (175)
T PF01789_consen  149 LTAQAPESRWDKVEPKLRKIV  169 (175)
T ss_dssp             EEEEEEHHHHHTCHHHHHHHH
T ss_pred             EEEEcCHHHHHHHHHHHHHHH
Confidence            999999999999999999863

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.30  E-value=0.0043  Score=51.00  Aligned_cols=120  Identities=14%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             EEEcCCCCccceeccccCCCcCCCCCCCCcceEEEeeCCCceEEEEEe--cCcccCCCCCCCccccCCHHHHHHhhcccc
Q 023424          132 QFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVAS--PLIRLTNKPNASIEEIGSPEKVIASLGPFV  209 (282)
Q Consensus       132 ~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d~~~enVsVvVs--P~~~L~~~~~~sI~dlGspeev~~~l~~~~  209 (282)
                      +|.+|.+|++..+.                 -+++.|......+++|+  ++.     ...+      +++..++.+..+
T Consensus         3 ~~~lP~~~~D~t~n-----------------v~~~~~~~~~~~slvIsR~~l~-----~g~t------l~~~~~~q~~~l   54 (130)
T PF08786_consen    3 SLTLPDGWQDRTMN-----------------VLVLPDSGGSGPSLVISRDPLP-----DGET------LEDYLQRQLAQL   54 (130)
T ss_dssp             EEEEETTSEE--BE-----------------EEEE--BTTB-EEEEEEEE--------TTS-------HHHHHHHHHHHH
T ss_pred             eEeCCCcceeceEE-----------------EEEccCCCCCcceEEEEeccCC-----CCCC------HHHHHHHHHHHH
Confidence            57899999998653                 36666654445555554  555     2444      444444433322


Q ss_pred             cCCCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCceEEEEEEEeC-CeEEEEEeeeCcccccchhhhccc
Q 023424          210 TGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKG-STVVLFVASANDKQWAGVTESFEN  280 (282)
Q Consensus       210 ~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~-GkLYtl~a~a~ekrW~k~~~~lr~  280 (282)
                       ......-++++...-+.+|.+-+.++|........-|+..++..-+ +++|+|+.+++.......+..+..
T Consensus        55 -~~~l~~~~~~~~~~~~l~~~~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~  125 (130)
T PF08786_consen   55 -RKQLPGFQLVERQPITLGGRPARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEA  125 (130)
T ss_dssp             -HCCSTT-EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHH
T ss_pred             -HhhCCCcEEEeeEEEEeCCCCeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence             2334556888887888899999999999887667789888888888 999999999988877776665543

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PRK11615 hypothetical protein; Provisional

Probab=86.47  E-value=19  Score=32.36  Aligned_cols=124  Identities=7%  Similarity=-0.017  Sum_probs=75.0

Q ss_pred             CeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEeeCCCceEEEEEecCcccCCCCCCCccccCCHHHHHHhhcccc
Q 023424          130 PYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFV  209 (282)
Q Consensus       130 gY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d~~~enVsVvVsP~~~L~~~~~~sI~dlGspeev~~~l~~~~  209 (282)
                      ..+|.+|.|+.+.....   ||       ....=-+|.|.....+-+||-+        +.+=++   .+..+.+|..+-
T Consensus        49 Kl~FtLPag~sdqsgk~---Gt-------q~nn~~vYad~tg~kavIVi~g--------D~~~~~---Ld~la~rl~~qQ  107 (185)
T PRK11615         49 KLSFTLPADMSDQSGKL---GT-------QANNMHVYADATGQKAVIVILG--------DDTNED---LAVLAKRLEDQQ  107 (185)
T ss_pred             EEEEEcCCccccccccc---cc-------cccceEEEEcCCCCEEEEEEeC--------CCChhh---HHHHHHHHHHHH
Confidence            68999999999764322   32       1124456777555554433321        122222   355566775543


Q ss_pred             cCCCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCceEEEEEEEeCCeEEEEEeeeCcccccchh
Q 023424          210 TGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVT  275 (282)
Q Consensus       210 ~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~GkLYtl~a~a~ekrW~k~~  275 (282)
                      -. ....-.++.-..-+++|+.++.++-........--+-+..+..++||-++.+..|.+-=.+.+
T Consensus       108 r~-rdp~lqvvsnK~i~i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqqaq  172 (185)
T PRK11615        108 RS-RDPQLQVVTNKAIELKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQQAQ  172 (185)
T ss_pred             Hh-hCcCceeecceeEEECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCCCCHHHHH
Confidence            21 122334556666677999999999877755333444555788999999999998876544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		6e-04

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 40/164 (24%)
Query: 131 YQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKP 188
           Y+F+ P  W Q++V              E  V+V F D  E    V VV +     T   
Sbjct: 18  YEFLYPRGWVQVQV--------------EDPVDVVFHDIIETTENVSVVVN-----TVAS 58
Query: 189 NASIEEIGSPEKVIASLGPFVTGNSYDPDE------LIETSVEKVGDQMYYNYLLETPFA 242
             S+EE+GSPE+V    G  +  N   P E      LI  + +K  D+ Y  Y+LE    
Sbjct: 59  TKSLEELGSPEEV----GDRLLRNIIAPSESGRSSALIAATSQKADDKTY--YILEYAVT 112
Query: 243 LTGT-------HNLAKATAKGSTVVLFVASANDKQWAGVTESFE 279
           L G        HNL+        V     SA +++W  V + F+
Sbjct: 113 LPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFK 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	1e-21
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	2e-21
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	4e-17
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	3e-16

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 88.8 bits (219), Expect = 1e-21
 Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 38/183 (20%)

Query: 116 SPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGK 173
            PK     +  N   ++  +P  W   +                P   ++FED  +    
Sbjct: 2   KPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEY------------PGQVLRFEDNFDATSN 49

Query: 174 VQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPD---------------E 218
           V V  +P          SI + GSPE+ ++ +   +   +Y                   
Sbjct: 50  VIVAITPT------DKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIAN 103

Query: 219 LIETSVEKVGDQMYYN--YLLETP-FALTGTHNLAKATAKGSTVVLFVASANDKQWAGVT 275
           ++ETS  +VG + YY    L  T      G H L  AT     + +  A A DK+W    
Sbjct: 104 VLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGA 163

Query: 276 ESF 278
           + F
Sbjct: 164 KKF 166

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 76.1 bits (186), Expect = 4e-17
 Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 28/159 (17%)

Query: 131 YQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKP 188
           Y+F+ P  W Q++V              E  V+V F D  E    V VV + +       
Sbjct: 18  YEFLYPRGWVQVQV--------------EDPVDVVFHDIIETTENVSVVVNTV-----AS 58

Query: 189 NASIEEIGSPEKVIASLGPFVTG--NSYDPDELIETSVEKVGDQMYYN--YLLETPFALT 244
             S+EE+GSPE+V   L   +     S     LI  + +K  D+ YY   Y +  P    
Sbjct: 59  TKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGN 118

Query: 245 GT---HNLAKATAKGSTVVLFVASANDKQWAGVTESFEN 280
                HNL+        V     SA +++W  V + F+ 
Sbjct: 119 TAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKT 157

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 73.8 bits (180), Expect = 3e-16
 Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 21/155 (13%)

Query: 131 YQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKP 188
           Y+F+ P  W  + V             A P V+V F D  E+   + V+ S +       
Sbjct: 24  YEFLYPNGWIGVDVKG-----------ASPGVDVVFRDLIERDENLSVIISEI-----PS 67

Query: 189 NASIEEIGSPEKVIASLGPFVTG--NSYDPDELIETSVEKVGDQMYYNYLLETPFALTGT 246
           + ++ ++G+   V       V          ELI         Q+YY             
Sbjct: 68  DKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVE 127

Query: 247 -HNLAKATAKGSTVVLFVASANDKQWAGVTESFEN 280
            H+LA  T     ++ F  S  + +W  V   F+ 
Sbjct: 128 RHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDT 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	97.39
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	92.14

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.4e-38  Score=277.43  Aligned_cols=148  Identities=28%  Similarity=0.439  Sum_probs=123.1

Q ss_pred             CCCCCCceEEecCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecC
Q 023424          104 SPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPL  181 (282)
Q Consensus       104 ~~~~~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~  181 (282)
                      +..+.||.+|.+             +||+|+||++|+++++.+            .||+|++|+|  +.++||+|+|+|+
T Consensus         3 ~~~~~g~~~y~~-------------~gysf~yP~~W~~~~~~~------------~~G~~~~f~d~~~~~~nvsV~v~p~   57 (177)
T 1v2b_A            3 PKTDTDFQTYNG-------------DGFKLQIPSKWNPNKEVE------------YPGQVLRFEDNFDATSNVIVAITPT   57 (177)
T ss_dssp             ----CCEEEEEC-------------SSEEEEEETTCEECCCCC------------STTEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCCCceEEec-------------CCEEEEcCCCCccccccc------------CCCceEEEeCCcCCCccEEEEEeCC
Confidence            345679999984             899999999999988765            3579999999  6789999999999


Q ss_pred             cccCCCCCCCccccCCHHHH----HHhhcccccCC-----------CCCCCceEEeeEEEeCCeEEEEEEEEeccCC---
Q 023424          182 IRLTNKPNASIEEIGSPEKV----IASLGPFVTGN-----------SYDPDELIETSVEKVGDQMYYNYLLETPFAL---  243 (282)
Q Consensus       182 ~~L~~~~~~sI~dlGspeev----~~~l~~~~~~~-----------~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~---  243 (282)
                      .      +++|+|||+|++|    +++|+++++.+           ++++++||++++++.||++||+|||.+++++   
T Consensus        58 ~------~~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e  131 (177)
T 1v2b_A           58 D------KKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNE  131 (177)
T ss_dssp             S------CSSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----
T ss_pred             C------CCChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCc
Confidence            8      6999999999995    66677765542           3477999999999999999999999999998   


Q ss_pred             CCceEEEEEEEeCCeEEEEEeeeCcccccch-hhhccccC
Q 023424          244 TGTHNLAKATAKGSTVVLFVASANDKQWAGV-TESFENHA  282 (282)
Q Consensus       244 ~~rH~LasatV~~GkLYtl~a~a~ekrW~k~-~~~lr~~a  282 (282)
                      ++||+|+++||++||||+|++|++|+||+++ ++.|++|+
T Consensus       132 ~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k~~~~~l~~v~  171 (177)
T 1v2b_A          132 GGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTA  171 (177)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHHHHHHH
T ss_pred             cccEEEEEEEEECCEEEEEEEecCHHHhhhhHHHHHHHHH
Confidence            7999999999999999999999999999996 99998763

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=7.4e-35  Score=248.66  Aligned_cols=146  Identities=27%  Similarity=0.442  Sum_probs=131.9

Q ss_pred             CCCceEEecCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecCccc
Q 023424          107 DPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRL  184 (282)
Q Consensus       107 ~~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~~~L  184 (282)
                      ..||.+|.++           .+||+|.||++|+++.+.+              ++|++|+|  +..+||+|+|+|+.  
T Consensus         5 ~~g~~~~~D~-----------~~gysf~~P~~W~~~~~~~--------------g~~v~f~d~~~~~~~v~V~v~p~~--   57 (165)
T 2xb3_A            5 TSGLQAYVDS-----------YDGYEFLYPRGWVQVQVED--------------PVDVVFHDIIETTENVSVVVNTVA--   57 (165)
T ss_dssp             -CCEEEEEET-----------TTTEEEEEETTEEEECCCT--------------TEEEEEEESSCTTSEEEEEEEECS--
T ss_pred             CCCceEEEcC-----------CCCEEEEcCCCCeEecCCC--------------CceEEEECcccCCceEEEEEecCC--
Confidence            4699999964           4899999999999987653              59999999  66899999999998  


Q ss_pred             CCCCCCCccccCCHHHHHHhhcccccCC--CCCCCceEEeeEEEeCCeEEEEEEEEeccCC-----CCceEEEEEEEeCC
Q 023424          185 TNKPNASIEEIGSPEKVIASLGPFVTGN--SYDPDELIETSVEKVGDQMYYNYLLETPFAL-----TGTHNLAKATAKGS  257 (282)
Q Consensus       185 ~~~~~~sI~dlGspeev~~~l~~~~~~~--~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~-----~~rH~LasatV~~G  257 (282)
                         +.++|+|||+|++|+++|+++.++.  +++.++|+++.+++.+|++||+|||.++.++     +.||+|++++|.+|
T Consensus        58 ---~~~~l~~~G~~e~va~~l~~~~~~~~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g  134 (165)
T 2xb3_A           58 ---STKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRG  134 (165)
T ss_dssp             ---SCCCSGGGCCHHHHHHHHHHHTTSCTTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETT
T ss_pred             ---CCCChHHcCCHHHHHHHHHHHhhcCCCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECC
Confidence               3799999999999999999988764  4788999999999999999999999999888     78999999999999


Q ss_pred             eEEEEEeeeCcccccchhhhccccC
Q 023424          258 TVVLFVASANDKQWAGVTESFENHA  282 (282)
Q Consensus       258 kLYtl~a~a~ekrW~k~~~~lr~~a  282 (282)
                      |||+|++++||++|.+++++|++|+
T Consensus       135 ~lY~l~~sape~~w~~~~~~l~~v~  159 (165)
T 2xb3_A          135 KVYTLSVSAPEERWPKVEDQFKTIV  159 (165)
T ss_dssp             EEEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred             EEEEEEEecCHHHhHHHHHHHHHHH
Confidence            9999999999999999999998863

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=7.1e-36  Score=257.33  Aligned_cols=148  Identities=22%  Similarity=0.384  Sum_probs=134.3

Q ss_pred             CCceEEecCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecCcccC
Q 023424          108 PSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLT  185 (282)
Q Consensus       108 ~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~~~L~  185 (282)
                      .||.+|.++           .+||+|.||++|+++.+.+...           ++|++|+|  +.++||+|+|+|+.+  
T Consensus        12 ~g~~~y~d~-----------~~gy~f~~P~gW~~~~~~~~~~-----------g~~v~f~d~~~~~~nvsV~v~p~~~--   67 (170)
T 2lnj_A           12 ASLQRYSDT-----------KDGYEFLYPNGWIGVDVKGASP-----------GVDVVFRDLIERDENLSVIISEIPS--   67 (170)
Confidence            589999953           4899999999999987765332           49999999  778999999999993  


Q ss_pred             CCCCCCccccCCHHHHHHhhcccccCC--CCCCCceEEeeEEEeCCeEEEEEEEEeccC-CCCceEEEEEEEeCCeEEEE
Q 023424          186 NKPNASIEEIGSPEKVIASLGPFVTGN--SYDPDELIETSVEKVGDQMYYNYLLETPFA-LTGTHNLAKATAKGSTVVLF  262 (282)
Q Consensus       186 ~~~~~sI~dlGspeev~~~l~~~~~~~--~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~-~~~rH~LasatV~~GkLYtl  262 (282)
                         .++|+|||+|++|+++|++++++.  +++.++||++.+++.+|++||+|||.++.+ ++.||+|++++|.+||||+|
T Consensus        68 ---~~si~d~G~pe~va~~l~~~~~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l  144 (170)
T 2lnj_A           68 ---DKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITF  144 (170)
Confidence               699999999999999999998874  488999999999999999999999999998 68899999999999999999


Q ss_pred             EeeeCcccccchhhhccccC
Q 023424          263 VASANDKQWAGVTESFENHA  282 (282)
Q Consensus       263 ~a~a~ekrW~k~~~~lr~~a  282 (282)
                      ++++||++|.+++++|++|+
T Consensus       145 ~~~ape~~w~~~~~~l~~v~  164 (170)
T 2lnj_A          145 DLSTAEDRWDTVKSLFDTVA  164 (170)
Confidence            99999999999999999874

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=97.39  E-value=0.0016  Score=54.05  Aligned_cols=124  Identities=4%  Similarity=-0.013  Sum_probs=82.4

Q ss_pred             CCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee-CC-C--ceEEEEEecCcccCCCCCCCccccCCHHHHHH
Q 023424          128 VQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED-EK-Q--GKVQVVASPLIRLTNKPNASIEEIGSPEKVIA  203 (282)
Q Consensus       128 ~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d-~~-~--enVsVvVsP~~~L~~~~~~sI~dlGspeev~~  203 (282)
                      +.+++|.+|.+|++..                  .-+.+-. +. .  -+|.|...++.     +..+++++=.-+  .+
T Consensus         8 ~~Egsl~lP~gw~D~t------------------~nv~~~~~~~~~g~~~lvIsR~~~~-----~~~~l~~~~~~q--~~   62 (148)
T 1tu1_A            8 LHEADLEIPDAWQDQS------------------INIFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQ--LE   62 (148)
T ss_dssp             CSSEEEEEETTSEECC------------------BEEEEECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHH--HH
T ss_pred             ECCEEEeCCCCcEeee------------------EEEEEcCCCCCCCceEEEEEeccCC-----CCCCHHHHHHHH--HH
Confidence            5799999999999553                  2233333 32 2  24444444555     345555543322  11


Q ss_pred             hhcccccCCCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCceEEEEEEEeCCeEEEEEeeeCcccccchhhhcccc
Q 023424          204 SLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENH  281 (282)
Q Consensus       204 ~l~~~~~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~GkLYtl~a~a~ekrW~k~~~~lr~~  281 (282)
                      .|.++     ...-+++.......+|..-..+||.-.......|+.-.+.+..+++|+|+.+++..-|...+..+..+
T Consensus        63 ~l~~~-----l~~y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i  135 (148)
T 1tu1_A           63 NAEKQ-----LPGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQA  135 (148)
T ss_dssp             HHHHH-----STTCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHH
T ss_pred             HHHhh-----CcCcEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHH
Confidence            12111     12246666666667899888888888766677999999988877999999999999999988877653

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=92.14  E-value=2.6  Score=35.74  Aligned_cols=123  Identities=10%  Similarity=-0.011  Sum_probs=74.5

Q ss_pred             CCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee----CCCceEEEEEecCcccCCCCCCCccccCCHHHHHHh
Q 023424          129 QPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED----EKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIAS  204 (282)
Q Consensus       129 dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d----~~~enVsVvVsP~~~L~~~~~~sI~dlGspeev~~~  204 (282)
                      .++++-.|.||+.....+.              +-+.=.+    .=.-|+-|.+.-..       .++     .|+.-..
T Consensus        18 p~~~v~~P~gWe~~~~~~~--------------~~~~~~~~~~~~F~pN~vVtv~r~~-------~~~-----~e~~r~e   71 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTMGT--------------QFAARPHTPPQGFTPNIIGTVRRAA-------TGA-----LHNQRTE   71 (161)
T ss_dssp             CEEEEECCTTEEECTTSSS--------------SEEEEESSCCSSSCCEEEEEEEEEC-------TTH-----HHHHHHH
T ss_pred             ceeeccCCCCceEcCCCCc--------------eEEeccCCCCCCccccEEEEEEecC-------cHH-----HHHHHHH
Confidence            5899999999999854431              1111122    12358888877655       112     2433333


Q ss_pred             hcccccCCCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCce---EEEEEEEeCCeEEEE--EeeeCcccccchhhhcc
Q 023424          205 LGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTH---NLAKATAKGSTVVLF--VASANDKQWAGVTESFE  279 (282)
Q Consensus       205 l~~~~~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH---~LasatV~~GkLYtl--~a~a~ekrW~k~~~~lr  279 (282)
                      |.+.+  .....-++++-...+.+|..-|..||....+..+.|   ...++.-.++..|++  ++++.+.+-....+.++
T Consensus        72 l~~~~--~~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q  149 (161)
T 3lyd_A           72 LDQRA--TQLPDYAERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFR  149 (161)
T ss_dssp             HHHHH--TTSTTCEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             HHHHH--hhCCCcEeecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHH
Confidence            32211  112234666667778899999999999766666666   344455577788887  77887766555444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	7e-17

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 74.3 bits (182), Expect = 7e-17
 Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 38/168 (22%)

Query: 131 YQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKP 188
           ++  +P  W   +                P   ++FED  +    V V  +P        
Sbjct: 11  FKLQIPSKWNPNKEVEY------------PGQVLRFEDNFDATSNVIVAITP------TD 52

Query: 189 NASIEEIGSPEKVIASLGPFVTGNSYDPD---------------ELIETSVEKVGDQMYY 233
             SI + GSPE+ ++ +   +   +Y                   ++ETS  +VG + YY
Sbjct: 53  KKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYY 112

Query: 234 NYLLETPFALTGT---HNLAKATAKGSTVVLFVASANDKQWAGVTESF 278
              + T  A       H L  AT     + +  A A DK+W    + F
Sbjct: 113 YLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKF 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	97.96

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2e-35  Score=252.43  Aligned_cols=143  Identities=26%  Similarity=0.454  Sum_probs=122.4

Q ss_pred             CCceEEecCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecCcccC
Q 023424          108 PSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLT  185 (282)
Q Consensus       108 ~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~~~L~  185 (282)
                      ++|.+|++             |||+|+||++|+++.+.+            .+++|++|+|  +..+||+|+|+|+.   
T Consensus         1 ~~~~~y~~-------------dgy~f~~P~~W~~~~~~~------------~~g~d~~f~d~~~~~~nv~V~v~p~~---   52 (171)
T d1v2ba_           1 TDFQTYNG-------------DGFKLQIPSKWNPNKEVE------------YPGQVLRFEDNFDATSNVIVAITPTD---   52 (171)
T ss_dssp             CCEEEEEC-------------SSEEEEEETTCEECCCCC------------STTEEEEEEETTEEEEEEEEEEEECS---
T ss_pred             CCcccccC-------------CCEEEECCCCCceecccC------------CCCceEEEeccccCCceEEEEEecCC---
Confidence            47999996             899999999998876543            2369999999  88999999999988   


Q ss_pred             CCCCCCccccCCHHHHHHhhcccccC---------------CCCCCCceEEeeEEEeCCeEEEEEEEEeccCC---CCce
Q 023424          186 NKPNASIEEIGSPEKVIASLGPFVTG---------------NSYDPDELIETSVEKVGDQMYYNYLLETPFAL---TGTH  247 (282)
Q Consensus       186 ~~~~~sI~dlGspeev~~~l~~~~~~---------------~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~---~~rH  247 (282)
                         +.+|++||+|+++++.++..+..               +.++.++|+++++++.||++||+|||.+++++   ++||
T Consensus        53 ---~~sl~~~G~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh  129 (171)
T d1v2ba_          53 ---KKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKH  129 (171)
T ss_dssp             ---CSSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEE
T ss_pred             ---CcchhhccChHHHHHHHHHHHhhhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccE
Confidence               78999999999999887655532               34677899999999999999999999998764   5799


Q ss_pred             EEEEEEEeCCeEEEEEeeeCcccccchhh-hcccc
Q 023424          248 NLAKATAKGSTVVLFVASANDKQWAGVTE-SFENH  281 (282)
Q Consensus       248 ~LasatV~~GkLYtl~a~a~ekrW~k~~~-~lr~~  281 (282)
                      +|++++|++||||+|++|+||+||+++.+ .|++|
T Consensus       130 ~l~~~~v~~grLYtl~~~~pe~~w~~~~~~~l~~~  164 (171)
T d1v2ba_         130 QLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENT  164 (171)
T ss_dssp             EEEEEEEETTEEEEEEEEEEGGGCSTTTTHHHHHH
T ss_pred             EEEEEEEeCCEEEEEEEecCHHHhhhhhHHHHHHH
Confidence            99999999999999999999999998654 57765

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.96  E-value=2e-05  Score=62.97  Aligned_cols=123  Identities=6%  Similarity=-0.002  Sum_probs=85.1

Q ss_pred             CCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee-CCCc--eEEEEEecCcccCCCCCCCccccCCHHHHHHhh
Q 023424          129 QPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED-EKQG--KVQVVASPLIRLTNKPNASIEEIGSPEKVIASL  205 (282)
Q Consensus       129 dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d-~~~e--nVsVvVsP~~~L~~~~~~sI~dlGspeev~~~l  205 (282)
                      ..=+|.+|.||++..+.                 .+.+.+ +...  ||.|...++.     +..+++|+      .++.
T Consensus         9 ~Egs~~lP~gw~d~t~n-----------------i~~~~~~~~~~~~~lvIsr~~l~-----~~~~l~~~------~~~~   60 (144)
T d1tu1a_           9 HEADLEIPDAWQDQSIN-----------------IFKLPASGPAREASFVISRDASQ-----GDAPFADY------VARQ   60 (144)
T ss_dssp             SSEEEEEETTSEECCBE-----------------EEEECCBTTBCCEEEEEEEECCC-----TTSCHHHH------HHHH
T ss_pred             cCEEEeCCCCceeCcce-----------------EEEecCCCCCcceEEEEEeecCC-----CCCCHHHH------HHHH
Confidence            44489999999865432                 234444 3333  4444444655     35555444      4433


Q ss_pred             cccccCCCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCceEEEEEEEeCCeEEEEEeeeCcccccchhhhccc
Q 023424          206 GPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFEN  280 (282)
Q Consensus       206 ~~~~~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~GkLYtl~a~a~ekrW~k~~~~lr~  280 (282)
                      ...+- .....-++++...-+.+|..-+..||.........|+..++.+.++++|+|+.+++...|+.....+..
T Consensus        61 ~~~l~-~~l~~~~~~~~~~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~~~~~  134 (144)
T d1tu1a_          61 LENAE-KQLPGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQ  134 (144)
T ss_dssp             HHHHH-HHSTTCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHH
T ss_pred             HHHHH-hhCCCcEEEeeEecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHHHHHH
Confidence            22221 112335888887788899999999999887777789999999999999999999999999887776654