Citrus Sinensis ID: 023426

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MLISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVAT
Secondary Structure (PSIPRED)
ccEEEEccccccccccEEEEEEEEEEEccccccccEEEEEEEEcccccccccccEEEEEEEEccccEEEEEEEEEEEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEccccccccccEEEEEEEEccccccccccccEEEEEEcEEEEEEEEEEEEEcccccccccEEEEEEEEEcccccccccccccEEEEEEccccccccccccccccccEEEEEEEcEEEccccEEEEEEEEEccccEEEEEEEEEEEEEEEccccEEEEcccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccEEEHHHHEEEEEccEccccEEEEEEEccccEEccccEEEEEEEEEcccccEEcEEEEEEEEEEEEEEcccccEEEHHHccccccEEEEEcEEEcccccccccccEEEEEEEEccccccccccccEEEEccEEEEEEEEEEEEEEcHHHHHHcccEEEEEEEcccccccccccccccEEEEEcccHHccccccHcccccEEEEEEEEcEEEEcccEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccccHEEEEEEEccccc
Coil and Loop (DISEMBL)
mlisvresgnppssgsrTFVLLRAFVLKLKLQIDMSTVEIKlsrsnriyrpseplqgkivikssssiFHYGIHLtvngsanlqvrggsAGVVESLYGVIKPIKILKKSQeirtsgrigsgttevpfsmnlkqhgeENLERFYETfhgadiniQYLVTVDIMRGYLHKSLSATVEFIVETdkadllerpvspemVVFYITQdtqrhpllpelksggfkvtgkmstqcslldpitgeltveassvpihsiDIHLLRMESILLGEKIISETSLIQTTQMEMSVAT
Flexible Loop (DISEMBL)
mlisvresgnppssgsrTFVLLRAFVLKLklqidmstveiklsrsnriyrpseplqgKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIkpikilkksqeirtsgrigsgttevpfsMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISetsliqttQMEMSVAT
Low Complexity Region (SEG)
MLISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVAT
Disordered region (IsUnstruct)
*****************TFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKS***************************ENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLI***********
Disordered Region (DISOPRED)
*********************LRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETD***********************************FKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVA*
Disordered Region (DISEMBL)
***************SRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVAT
Disordered Region (DISPRO)
MLISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
O35075	297	Down syndrome critical re	yes	no	0.808	0.767	0.379	1e-37
Q5RF33	297	Down syndrome critical re	yes	no	0.815	0.774	0.369	4e-37
O14972	297	Down syndrome critical re	yes	no	0.815	0.774	0.365	7e-37
Q54DI8	304	Down syndrome critical re	yes	no	0.843	0.782	0.296	2e-29

>sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3 homolog OS=Mus musculus GN=Dscr3 PE=2 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 138/248 (55%), Gaps = 20/248 (8%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           +T++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct: 3   TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           Y  +KPI+I+  + ++   G+I SG TEVPF   L   G + L   YET+HG  +NIQY 
Sbjct: 63  YNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYT 119

Query: 156 VTVDIMRGYLHKSLSATVEFIVET--DKADLLERPVSPEMVVFYIT----QDTQRHPLLP 209
           +  D+ R  L K L+ T EFIV +   K  L   PV      F IT    Q+ +    LP
Sbjct: 120 LRCDMRRSLLAKDLTKTCEFIVHSAPQKGKLTPSPVD-----FTITPETLQNVKERASLP 174

Query: 210 ELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISET 268
           +     F + G + ST C++  P+TGEL VE S   I SI++ L+R+E+    E    + 
Sbjct: 175 K-----FFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDA 229

Query: 269 SLIQTTQM 276
           + IQ  Q+
Sbjct: 230 TEIQNIQI 237

Mus musculus (taxid: 10090)

>sp|Q5RF33|DSCR3_PONAB Down syndrome critical region protein 3 homolog OS=Pongo abelii GN=DSCR3 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/246 (36%), Positives = 137/246 (55%), Gaps = 16/246 (6%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct: 3   TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct: 63  YNSVKPIQIINSNIEMVKPGKFPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYT 119

Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYIT----QDTQRHPLLPEL 211
           +  D+ R  L K L+ T EFIV +      +   SP  V F IT    Q+ +   LLP+ 
Sbjct: 120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFSPSPVHFTITPETLQNARERALLPK- 175

Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
               F + G + ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + 
Sbjct: 176 ----FLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATE 231

Query: 271 IQTTQM 276
           IQ  Q+
Sbjct: 232 IQNIQI 237

Pongo abelii (taxid: 9601)

>sp|O14972|DSCR3_HUMAN Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=2 SV=1

 Score =  154 bits (389), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/246 (36%), Positives = 137/246 (55%), Gaps = 16/246 (6%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct: 3   TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct: 63  YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYT 119

Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYIT----QDTQRHPLLPEL 211
           +  D+ R  L K L+ T EFIV +      +   +P  V F IT    Q+ +   LLP+ 
Sbjct: 120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVDFTITPETLQNVKERALLPK- 175

Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
               F + G + ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + 
Sbjct: 176 ----FLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATE 231

Query: 271 IQTTQM 276
           IQ  Q+
Sbjct: 232 IQNIQI 237

Homo sapiens (taxid: 9606)

>sp|Q54DI8|DSCR3_DICDI Down syndrome critical region protein 3 homolog OS=Dictyostelium discoideum GN=DDB_G0292212 PE=3 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 133/246 (54%), Gaps = 8/246 (3%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           + +++KL + ++IYRP   + G +VI S   + H G+ + V G+  LQ+   S G+ E+ 
Sbjct: 3   NVLDLKLKKIDKIYRPGSKVSGNVVINSKDDMSHSGVTIVVEGTVQLQLSSKSVGLFEAF 62

Query: 96  YGVIKPIKILKKSQEIRT-SGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQY 154
           Y  +KPI ++  +  +    G+  +G TE+PF   L+    + L   Y+T+HG  +NIQY
Sbjct: 63  YNSLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQL---YDTYHGVFVNIQY 119

Query: 155 LVTVDIMRGYLHKSLSATVEFIVE--TDKADLLERPVSPEMVVFYITQDTQ-RHPLLPEL 211
            +  D+ RG L K LS T+EFIVE  +   ++L +     ++ F IT D+      + + 
Sbjct: 120 SIKCDVKRGILSKDLSKTIEFIVEVPSQNKEVLMKSTPESLITFNITPDSLVNFKKISKA 179

Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
               FK++G + S  C++ +   G + +E++   I S+++ L+R+E+    +    E + 
Sbjct: 180 DVPTFKISGGLVSAICNINEAFQGHMIIESADTVIKSVELQLVRVETCGCADGYAREVTE 239

Query: 271 IQTTQM 276
           IQ  Q+
Sbjct: 240 IQNIQI 245

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
224133236	319	predicted protein [Populus trichocarpa]	0.858	0.758	0.781	1e-108
356531146	316	PREDICTED: Down syndrome critical region	0.847	0.756	0.766	1e-105
356520661	316	PREDICTED: Down syndrome critical region	0.847	0.756	0.762	1e-105
297852472	327	vacuolar protein sorting-associated prot	0.858	0.740	0.719	1e-102
357499097	321	Down syndrome critical region protein-li	0.840	0.738	0.748	1e-102
26450434	327	unknown protein [Arabidopsis thaliana]	0.854	0.737	0.709	1e-100
15221215	327	Vacuolar protein sorting-associated prot	0.854	0.737	0.709	1e-100
225456175	314	PREDICTED: Down syndrome critical region	0.840	0.754	0.720	1e-100
297734337	314	unnamed protein product [Vitis vinifera]	0.836	0.751	0.723	1e-100
449439465	320	PREDICTED: Down syndrome critical region	0.854	0.753	0.723	7e-98

>gi|224133236|ref|XP_002321517.1| predicted protein [Populus trichocarpa] gi|222868513|gb|EEF05644.1| predicted protein [Populus trichocarpa]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/243 (78%), Positives = 222/243 (91%), Gaps = 1/243 (0%)

Query: 35  MST-VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVE 93
           MST + +K SRSNRIYRPSEP++GKIVIKS SSI HYGI L+VNGS NLQVRGGSAGV+E
Sbjct: 1   MSTKIALKFSRSNRIYRPSEPVEGKIVIKSPSSISHYGIRLSVNGSVNLQVRGGSAGVIE 60

Query: 94  SLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQ 153
           + YGV+KPI I+ KS E++ SG+IGSGTTEVPF+M LKQ+GE++LERFYETFHG D++IQ
Sbjct: 61  TFYGVVKPITIVNKSIEVKPSGKIGSGTTEVPFTMVLKQNGEKSLERFYETFHGTDVSIQ 120

Query: 154 YLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKS 213
           YL TVDI RGYL+KSLSAT+E IVE+DKADLLERPVSPEM +FYITQDTQRHPLLPE+KS
Sbjct: 121 YLFTVDIARGYLYKSLSATMEVIVESDKADLLERPVSPEMAIFYITQDTQRHPLLPEIKS 180

Query: 214 GGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
           GGF+VTG+MST CSLLDPI+GELTVE S+VPI SIDIHLLR+ESIL+GEKI++ETSLIQT
Sbjct: 181 GGFRVTGRMSTLCSLLDPISGELTVETSAVPISSIDIHLLRVESILMGEKIVTETSLIQT 240

Query: 274 TQM 276
           TQ+
Sbjct: 241 TQI 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531146|ref|XP_003534139.1| PREDICTED: Down syndrome critical region protein 3 homolog [Glycine max]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 218/240 (90%), Gaps = 1/240 (0%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           +VE+KLSRSNRIYRPSE L+GKIV+K+ SSI HYGI LTV GS NLQVRGGSAGVVES Y
Sbjct: 2   SVELKLSRSNRIYRPSEALEGKIVVKTQSSISHYGIRLTVKGSVNLQVRGGSAGVVESFY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           GVIKPI I+ ++ E+++SG+IGSGT+E+PFS+NL+Q  +ENLERFYETFHGA+I+IQYL 
Sbjct: 62  GVIKPIPIVNRTIEVKSSGKIGSGTSEIPFSVNLRQR-DENLERFYETFHGANISIQYLA 120

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVDI RGYLHKSLSAT+E IVE+DKADLL+RP+SPEM +FYITQDTQRHPLLPELKSGGF
Sbjct: 121 TVDISRGYLHKSLSATMELIVESDKADLLQRPLSPEMAIFYITQDTQRHPLLPELKSGGF 180

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQM 276
           +VTGK+ TQCSL  PI+GELTVE S+VPIHSID+ L R+ESILLGEKI++ETSL+QTTQ+
Sbjct: 181 RVTGKICTQCSLSGPISGELTVETSAVPIHSIDLQLFRVESILLGEKIVTETSLVQTTQI 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520661|ref|XP_003528979.1| PREDICTED: Down syndrome critical region protein 3 homolog [Glycine max]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/240 (76%), Positives = 219/240 (91%), Gaps = 1/240 (0%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           +VE+KLSRSNRIYRPSE L+GKI++K+ SSI HYGI LTV GS NLQVRGGSAGVVES Y
Sbjct: 2   SVELKLSRSNRIYRPSEALEGKIIVKTQSSISHYGIRLTVKGSVNLQVRGGSAGVVESFY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           GVIKPI I+ ++ E+++SG+IGSGT+E+PFS+NL+Q  +ENLERFYETFHGA+I+IQYL 
Sbjct: 62  GVIKPIPIVNRTIEVKSSGKIGSGTSEIPFSVNLRQR-DENLERFYETFHGANISIQYLA 120

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVDI RGYLHKSLSAT+EFIVE+DKADL ++P+SPEM +FYITQDTQRHPLLPELKSGGF
Sbjct: 121 TVDISRGYLHKSLSATMEFIVESDKADLQQQPLSPEMAIFYITQDTQRHPLLPELKSGGF 180

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQM 276
           +VTGK+STQCSL  PI+GELTVE S+VPIHSIDI L R+ES+LLGEKI++ETSL+QTTQ+
Sbjct: 181 RVTGKISTQCSLSGPISGELTVETSAVPIHSIDIQLFRVESVLLGEKIVTETSLVQTTQI 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852472|ref|XP_002894117.1| vacuolar protein sorting-associated protein 26 family protein [Arabidopsis lyrata subsp. lyrata] gi|297339959|gb|EFH70376.1| vacuolar protein sorting-associated protein 26 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/242 (71%), Positives = 218/242 (90%)

Query: 35  MSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVES 94
           ++TV +KLSRSNRIYR SEP++GKIVIKS++SI H  I L+VNGS NLQVRGGSAGV+ES
Sbjct: 4   VTTVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQPIRLSVNGSVNLQVRGGSAGVIES 63

Query: 95  LYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQY 154
            YGVIKPI+I+KK+ E+R+SG+I  GTTE+PFS+NL++ GE  +E+FYETFHG +INIQY
Sbjct: 64  FYGVIKPIQIVKKTIEVRSSGKIPPGTTEIPFSLNLREPGESIVEKFYETFHGTNINIQY 123

Query: 155 LVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSG 214
           L+T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PEMV+FYITQDTQRHPLLPE+K+G
Sbjct: 124 LLTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEMVIFYITQDTQRHPLLPEIKTG 183

Query: 215 GFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTT 274
           GF+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+T
Sbjct: 184 GFRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQST 243

Query: 275 QM 276
           Q+
Sbjct: 244 QI 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499097|ref|XP_003619837.1| Down syndrome critical region protein-like protein [Medicago truncatula] gi|355494852|gb|AES76055.1| Down syndrome critical region protein-like protein [Medicago truncatula]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/239 (74%), Positives = 212/239 (88%), Gaps = 2/239 (0%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           +V +KLSR NRIYRPSE L+GKI++K+ SSI HYGI LT+ GS NLQVRGGSAGVVES Y
Sbjct: 2   SVHLKLSRPNRIYRPSELLEGKIIVKTQSSISHYGIRLTIKGSVNLQVRGGSAGVVESFY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           GVIKPI I+K++ E+++S +IGSGTTE+PFS+NL+Q  +E+LERFYETFHGADI+IQYL+
Sbjct: 62  GVIKPIPIVKRTVEVQSSRKIGSGTTEIPFSLNLRQ--DEDLERFYETFHGADISIQYLL 119

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVDI RGYLHKSLSAT EFI+E+DK DLL+RP+ PEMV+FYITQDTQRHPLLPELKSGGF
Sbjct: 120 TVDISRGYLHKSLSATTEFIIESDKGDLLQRPIPPEMVIFYITQDTQRHPLLPELKSGGF 179

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
           +VTGK+ TQCSL  P+ GELTVE S+VPI SIDI L R+ESIL GEKI++ETSLIQTTQ
Sbjct: 180 RVTGKICTQCSLSSPLNGELTVERSAVPIQSIDIQLFRVESILHGEKIVTETSLIQTTQ 238

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450434|dbj|BAC42331.1| unknown protein [Arabidopsis thaliana]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/241 (70%), Positives = 217/241 (90%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           +TV +KLSRSNRIYR SEP++GKIVIKS++SI H  I L+VNGS NLQVRGGSAGV+ES 
Sbjct: 5   TTVNVKLSRSNRIYRSSEPVEGKIVIKSAASISHQAIRLSVNGSVNLQVRGGSAGVIESF 64

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           YGVIKPI+I+KK+ E+++SG+I  GTTE+PFS+NL++ GE  +E+FYETFHG +INIQYL
Sbjct: 65  YGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYL 124

Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
           +T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PE+V+FYITQDTQRHPLLP++K+GG
Sbjct: 125 LTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGG 184

Query: 216 FKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
           F+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+TQ
Sbjct: 185 FRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQ 244

Query: 276 M 276
           +
Sbjct: 245 I 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221215|ref|NP_175288.1| Vacuolar protein sorting-associated protein 26 [Arabidopsis thaliana] gi|332194192|gb|AEE32313.1| Vacuolar protein sorting-associated protein 26 [Arabidopsis thaliana]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/241 (70%), Positives = 217/241 (90%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           +TV +KLSRSNRIYR SEP++GKIVIKS++SI H  I L+VNGS NLQVRGGSAGV+ES 
Sbjct: 5   TTVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESF 64

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           YGVIKPI+I+KK+ E+++SG+I  GTTE+PFS+NL++ GE  +E+FYETFHG +INIQYL
Sbjct: 65  YGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYL 124

Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
           +T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PE+V+FYITQDTQRHPLLP++K+GG
Sbjct: 125 LTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGG 184

Query: 216 FKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
           F+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+TQ
Sbjct: 185 FRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQ 244

Query: 276 M 276
           +
Sbjct: 245 I 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456175|ref|XP_002278791.1| PREDICTED: Down syndrome critical region protein 3 homolog [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/240 (72%), Positives = 216/240 (90%), Gaps = 3/240 (1%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           ++EIKL R NRIY P+EPL+GKI++KS SSI HYGI LT++GS N QVRGGSAG +E+LY
Sbjct: 2   SIEIKLFRPNRIYFPAEPLEGKIILKSPSSISHYGIRLTLDGSVNRQVRGGSAGAIEALY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           G +KPI+I+ KS EIR +G+IGSGTTE+PFS+ L+Q G++   RFYETFHGA+I+IQYLV
Sbjct: 62  GAVKPIRIVNKSVEIRPAGKIGSGTTEIPFSVILRQQGDD---RFYETFHGANISIQYLV 118

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVD+MRGYL+KSLSAT+EFI+++DKA+L E PV PEMV+FYITQDTQRHPLLPEL+SGGF
Sbjct: 119 TVDVMRGYLYKSLSATMEFIIDSDKANLFEPPVPPEMVIFYITQDTQRHPLLPELRSGGF 178

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQM 276
           +VTGK+S+QCSLLDPI+GEL VEAS+VPIHSID+ L R+ESIL+GEKI++E+SLIQTTQ+
Sbjct: 179 RVTGKVSSQCSLLDPISGELIVEASAVPIHSIDLQLHRVESILVGEKIVTESSLIQTTQI 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734337|emb|CBI15584.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/239 (72%), Positives = 215/239 (89%), Gaps = 3/239 (1%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           ++EIKL R NRIY P+EPL+GKI++KS SSI HYGI LT++GS N QVRGGSAG +E+LY
Sbjct: 2   SIEIKLFRPNRIYFPAEPLEGKIILKSPSSISHYGIRLTLDGSVNRQVRGGSAGAIEALY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           G +KPI+I+ KS EIR +G+IGSGTTE+PFS+ L+Q G++   RFYETFHGA+I+IQYLV
Sbjct: 62  GAVKPIRIVNKSVEIRPAGKIGSGTTEIPFSVILRQQGDD---RFYETFHGANISIQYLV 118

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVD+MRGYL+KSLSAT+EFI+++DKA+L E PV PEMV+FYITQDTQRHPLLPEL+SGGF
Sbjct: 119 TVDVMRGYLYKSLSATMEFIIDSDKANLFEPPVPPEMVIFYITQDTQRHPLLPELRSGGF 178

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
           +VTGK+S+QCSLLDPI+GEL VEAS+VPIHSID+ L R+ESIL+GEKI++E+SLIQTTQ
Sbjct: 179 RVTGKVSSQCSLLDPISGELIVEASAVPIHSIDLQLHRVESILVGEKIVTESSLIQTTQ 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439465|ref|XP_004137506.1| PREDICTED: Down syndrome critical region protein 3-like [Cucumis sativus]

 Score =  362 bits (930), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 175/242 (72%), Positives = 209/242 (86%), Gaps = 1/242 (0%)

Query: 35  MSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVES 94
           M  VE+KLSR+NRIYRPSE LQG+I++ S SSI H GI L +NGS NLQVRGGSAGV+ES
Sbjct: 1   MPVVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIES 60

Query: 95  LYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQY 154
           +YGVIKPI I+ +S  +  SG++ SGT E+PFS+ L+Q  E NL ++YETFHG DINIQY
Sbjct: 61  VYGVIKPISIVNRSILVSPSGKLASGTNEIPFSVILRQPNE-NLGKYYETFHGTDINIQY 119

Query: 155 LVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSG 214
           LVTVDI RGYLHKSLSAT+EFIVE+D AD LERP+S EMV+FYITQDTQRHPLLPEL+SG
Sbjct: 120 LVTVDISRGYLHKSLSATMEFIVESDTADFLERPLSSEMVIFYITQDTQRHPLLPELRSG 179

Query: 215 GFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTT 274
           GF+VTGKMST CSL DP+TGEL VE S+VPI+SIDIHL R+ES++LGE+II+ETS+IQTT
Sbjct: 180 GFRVTGKMSTLCSLSDPLTGELIVETSAVPINSIDIHLCRVESVILGERIITETSVIQTT 239

Query: 275 QM 276
           Q+
Sbjct: 240 QI 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2198075	327	AT1G48550 "AT1G48550" [Arabido	0.854	0.737	0.709	3e-92
UNIPROTKB|F1SGV6	297	DSCR3 "Uncharacterized protein	0.815	0.774	0.378	3e-37
MGI|MGI:1206040	297	Dscr3 "Down syndrome critical	0.826	0.784	0.378	6.3e-37
UNIPROTKB|E2RM98	297	DSCR3 "Uncharacterized protein	0.815	0.774	0.378	1.3e-36
RGD|1306879	220	Dscr3 "Down syndrome critical	0.758	0.972	0.392	3.5e-36
UNIPROTKB|E1BSI1	297	DSCR3 "Uncharacterized protein	0.822	0.781	0.372	5.7e-36
UNIPROTKB|Q58DN0	262	DSCR3 "Down syndrome critical	0.815	0.877	0.369	5.7e-36
UNIPROTKB|O14972	297	DSCR3 "Down syndrome critical	0.815	0.774	0.365	9.2e-36
ZFIN|ZDB-GENE-040801-6	297	dscr3 "Down syndrome critical	0.819	0.777	0.358	2.4e-35
UNIPROTKB|A6QLW5	292	DSCR3 "Uncharacterized protein	0.797	0.770	0.365	3.2e-33

TAIR|locus:2198075 AT1G48550 "AT1G48550" [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 171/241 (70%), Positives = 217/241 (90%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +TV +KLSRSNRIYR SEP++GKIVIKS++SI H  I L+VNGS NLQVRGGSAGV+ES 
Sbjct:     5 TTVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESF 64

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             YGVIKPI+I+KK+ E+++SG+I  GTTE+PFS+NL++ GE  +E+FYETFHG +INIQYL
Sbjct:    65 YGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYL 124

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
             +T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PE+V+FYITQDTQRHPLLP++K+GG
Sbjct:   125 LTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGG 184

Query:   216 FKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
             F+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+TQ
Sbjct:   185 FRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQ 244

Query:   276 M 276
             +
Sbjct:   245 I 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|F1SGV6 DSCR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 93/246 (37%), Positives = 138/246 (56%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +T++IK+ R+N++Y   E L G +VI    S+ H G+ LTV G+ NLQ+   S GV E+ 
Sbjct:     3 TTLDIKIKRANKVYHAGEMLSGVVVISGKDSVQHQGVSLTVEGTVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTVEMAKPGKFPSGKTEIPFEFPLHVKGTKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +  ++P  V F IT DT    +   LLP+ 
Sbjct:   120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPDTLQNVKERALLPK- 175

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I SI++ L+R+E+    E    + + 
Sbjct:   176 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 231

Query:   271 IQTTQM 276
             IQ  Q+
Sbjct:   232 IQNIQI 237

GO:0005634 "nucleus" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

MGI|MGI:1206040 Dscr3 "Down syndrome critical region gene 3" [Mus musculus (taxid:10090)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 92/243 (37%), Positives = 140/243 (57%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +T++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct:     3 TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + ++   G+I SG TEVPF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKS-G 214
             +  D+ R  L K L+ T EFIV +      +  ++P  V F IT +T ++  + E  S  
Sbjct:   120 LRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQN--VKERASLP 174

Query:   215 GFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
              F + G + ST C++  P+TGEL VE S   I SI++ L+R+E+    E    + + IQ 
Sbjct:   175 KFFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQN 234

Query:   274 TQM 276
              Q+
Sbjct:   235 IQI 237

GO:0005634 "nucleus" evidence=ISO

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

UNIPROTKB|E2RM98 DSCR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 93/246 (37%), Positives = 138/246 (56%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             ++++IK+ R+N++Y   E L G +VI    SI H G+ LTV GS NLQ+   S GV E+ 
Sbjct:     3 TSLDIKIKRANKVYHAGEVLSGVVVISGKDSIQHQGVSLTVEGSVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +  ++P  V F IT +T    +   LLP+ 
Sbjct:   120 LRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQNVKERALLPK- 175

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I SI++ L+R+E+    E    + + 
Sbjct:   176 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 231

Query:   271 IQTTQM 276
             IQ  Q+
Sbjct:   232 IQNIQI 237

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

RGD|1306879 Dscr3 "Down syndrome critical region gene 3" [Rattus norvegicus (taxid:10116)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 88/224 (39%), Positives = 133/224 (59%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +T++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct:     3 TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + ++   G+I SG TEVPF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKS-G 214
             +  D+ R  L K L+ T EFIV +      +  ++P  V F IT +T ++  + E  S  
Sbjct:   120 LRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQN--VKERASLP 174

Query:   215 GFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMES 257
              F + G + ST C++  P+TGEL VE S   I SI++ L+R+E+
Sbjct:   175 KFLIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVET 218

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

UNIPROTKB|E1BSI1 DSCR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 91/244 (37%), Positives = 142/244 (58%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             + ++IK+ R+N++YR  E L G +VI S  ++ H GI LT+ GS NLQ+   S GV E+ 
Sbjct:     3 TALDIKIKRANKVYRCGEILSGVVVITSKDTVQHQGISLTMEGSVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + E+   G++ SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIEMVKPGKLPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLER-PVSPEMVVFYITQDTQRHPLLPELKS- 213
             +  D+ R  L K L+ T EFIV +    L ++  ++P  V F IT +T ++  + E  S 
Sbjct:   120 LRCDMRRSLLAKDLTKTCEFIVHS----LSQKGKLTPSPVDFTITPETLQN--VKERASL 173

Query:   214 GGFKVTGKMS-TQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQ 272
               F + G +S T C +  P+TGEL VE++   + SI++ L+R+E+    E    + + IQ
Sbjct:   174 PKFLIRGHLSSTNCVITQPLTGELVVESAEAAVKSIELQLVRVETCGCAEGYARDATEIQ 233

Query:   273 TTQM 276
               Q+
Sbjct:   234 NIQI 237

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q58DN0 DSCR3 "Down syndrome critical region protein 3" [Bos taurus (taxid:9913)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 91/246 (36%), Positives = 137/246 (55%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +T++IK+ R+N++Y   E L G +VI    S+ H G+ LTV G+ NLQ+   S GV E+ 
Sbjct:     3 TTLDIKIKRANKVYHAGEMLSGVVVISGKDSVQHQGLSLTVEGTVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+++  + E+   G+   G TE+PF   L  H + N +  YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQVINSTIEMVKPGKFPGGKTEIPFEFPL--HVKSN-KVLYETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +   +P  V F IT DT    +   LLP+ 
Sbjct:   120 LRCDMRRSLLAKDLTKTCEFIVHSTPQ---KGKWTPSPVDFTITPDTLQNVKERALLPK- 175

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I SI++ L+R+E+    E    + + 
Sbjct:   176 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 231

Query:   271 IQTTQM 276
             IQ  Q+
Sbjct:   232 IQNIQI 237

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

UNIPROTKB|O14972 DSCR3 "Down syndrome critical region protein 3" [Homo sapiens (taxid:9606)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 90/246 (36%), Positives = 137/246 (55%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct:     3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +   +P  V F IT +T    +   LLP+ 
Sbjct:   120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVDFTITPETLQNVKERALLPK- 175

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + 
Sbjct:   176 ----FLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATE 231

Query:   271 IQTTQM 276
             IQ  Q+
Sbjct:   232 IQNIQI 237

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040801-6 dscr3 "Down syndrome critical region gene 3" [Danio rerio (taxid:7955)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 87/243 (35%), Positives = 138/243 (56%)

Query:    37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
             +++I+L R+N++Y   E L G +V+ S   + H G+ L++ G  NLQ+   S GV E+ Y
Sbjct:     4 SLDIRLKRANKVYHEGERLCGLLVVVSRDPLQHQGVSLSLEGLVNLQLSAKSVGVFEAFY 63

Query:    97 GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
               +KPI+++  + E+   G++ +G TE+PF   L+  G + L   YET+HG  +NIQY +
Sbjct:    64 NSVKPIQLVSSTMEVAKPGKVPAGRTEIPFEFPLQAKGNKQL---YETYHGVFVNIQYTL 120

Query:   157 TVDIMRGYLHKSLSATVEFIV--ETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSG 214
               DI R  L K LS + EF+V  +  KA L   PV      F IT +T ++ +       
Sbjct:   121 RCDIRRSLLAKDLSKSCEFMVHCQPQKAKLQPNPVD-----FSITPETLQN-IRERASLP 174

Query:   215 GFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
              F + G + +T CS+  P++GEL VE S VPI SI++ L+R+E+    E    + + IQ 
Sbjct:   175 RFLIRGHLDATCCSITRPLSGELVVENSEVPIKSIELQLVRVETCGCAEGYARDATEIQN 234

Query:   274 TQM 276
              Q+
Sbjct:   235 IQI 237

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A6QLW5 DSCR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 90/246 (36%), Positives = 135/246 (54%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +T++IK+ R+N+     E L G +VI    S+ H G+ LTV G+ NLQ+   S GV E+ 
Sbjct:     3 TTLDIKIKRANK-----EMLSGVVVISGKDSVQHQGLSLTVEGTVNLQLSAKSVGVFEAF 57

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+++  + E+   G+   G TE+PF   L  H + N +  YET+HG  +NIQY 
Sbjct:    58 YNSVKPIQVINSTIEMVKPGKFPGGKTEIPFEFPL--HVKSN-KVLYETYHGVFVNIQYT 114

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +   +P  V F IT DT    +   LLP+ 
Sbjct:   115 LRCDMRRSLLAKDLTKTCEFIVHSTPQ---KGKWTPSPVDFTITPDTLQNVKERALLPK- 170

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I SI++ L+R+E+    E    + + 
Sbjct:   171 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 226

Query:   271 IQTTQM 276
             IQ  Q+
Sbjct:   227 IQNIQI 232

GO:0005634 "nucleus" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
pfam03643	275	pfam03643, Vps26, Vacuolar protein sorting-associa	3e-14

>gnl|CDD|146336 pfam03643, Vps26, Vacuolar protein sorting-associated protein 26

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 44/234 (18%), Positives = 85/234 (36%), Gaps = 39/234 (16%)

Query: 45  SNRIYRPSEPLQGKIVI--KSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPI 102
            N +Y   E + GK+ I  K    + H GI +               G +E  Y    P 
Sbjct: 31  KNPVYYDGESVSGKVNIRLKDGKKVEHQGIKIEF------------VGQIELFYDRGNPH 78

Query: 103 KILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMR 162
           +     +E+   G +    T  PF           +E+ YE++ G ++ ++Y + V ++R
Sbjct: 79  EFTNLVRELAPPGELTQSKT-FPFEFP-------LVEKPYESYIGVNVRLRYFLRVTVVR 130

Query: 163 GYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKM 222
                 ++   +F V     +    P +   +   +  +   H      KS         
Sbjct: 131 RL--TDITKEKDFWVH----NFTTYPETNNSIKMEVGIEDCLHIEFEYNKS--------- 175

Query: 223 STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQM 276
             +  L D I G++      + I  +++ L+R ES   G    +E+  I   ++
Sbjct: 176 --KYHLKDVIVGKIYFLLVRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEI 227

Vacuolar protein sorting-associated protein (Vps) 26 is one of around 50 proteins involved in protein trafficking. In particular, Vps26 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps29 and Vps35. This family also contains Down syndrome critical region 3/A. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
KOG2717	313	consensus Uncharacterized conserved protein with s	100.0
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	100.0
KOG3063	301	consensus Membrane coat complex Retromer, subunit	100.0
KOG3780	427	consensus Thioredoxin binding protein TBP-2/VDUP1	99.92
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	99.89
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	98.0
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	97.88
KOG3865	402	consensus Arrestin [Signal transduction mechanisms	96.4
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	96.35
PF13002	191	LDB19: Arrestin_N terminal like; InterPro: IPR0243	96.15
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	94.64
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	93.8
PF04425	438	Bul1_N: Bul1 N terminus; InterPro: IPR007519 This	92.57
KOG3865	402	consensus Arrestin [Signal transduction mechanisms	90.15
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	88.71
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	86.0
COG4326	270	Spo0M Sporulation control protein [General functio	84.58
KOG3780	427	consensus Thioredoxin binding protein TBP-2/VDUP1	82.12
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	80.94

>KOG2717 consensus Uncharacterized conserved protein with similarity to embryogenesis protein H beta 58 and VPS26 [General function prediction only]

Probab=100.00  E-value=2.4e-63  Score=441.03  Aligned_cols=241  Identities=56%  Similarity=0.905  Sum_probs=229.4

Q ss_pred             EEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcc
Q 023426           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR  116 (282)
Q Consensus        37 ~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~  116 (282)
                      +++|+++|.+++|+.||.+.|+|++..+..++|+||++.++|.+++|.+.+++|.||+||++++|+++++.++++..+|+
T Consensus         4 ~~~vkl~rsnriy~s~e~l~G~vvi~sa~s~~Hqgi~L~~eG~VNLQlsaksvGvfeaFYnsvKPIqiv~~tiE~~~pGK   83 (313)
T KOG2717|consen    4 TVNVKLSRSNRIYRSSEPLEGKVVIKSATSISHQGIRLSVEGSVNLQLSAKSVGVFEAFYNSVKPIQIVKKTIEVKSPGK   83 (313)
T ss_pred             eEEEEEecccceeecCCccceeEEEEeccccccceEEEEEeeEEEEEEeccceeeeHHhhccccchhhhhceEEEecCCC
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCCCCceeEE
Q 023426          117 IGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVF  196 (282)
Q Consensus       117 Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~~~~pv~f  196 (282)
                      +|+|++||||+|+|.+++.|  +++||+|||+|++|+|.++|+|.|.++.|++++.++|.|++.+.|+.+.  +|++|.|
T Consensus        84 ~p~G~tEipFelpL~~kge~--~~lYETyHGvfiNiqY~LtcdikR~~L~K~ltkt~eFiv~s~pv~l~e~--~p~iV~F  159 (313)
T KOG2717|consen   84 IPPGTTEIPFELPLREKGEG--EKLYETYHGVFINIQYLLTCDIKRGYLHKPLTKTMEFIVESGPVDLPER--PPEIVIF  159 (313)
T ss_pred             CCCCceeeeeeeeeccCCCc--cEeeeeecceEEEEEEEEEEecccchhcCchhhhheeeeccCCcccccC--CCcceEE
Confidence            99999999999999987654  8899999999999999999999999999999999999999999988765  4788999


Q ss_pred             EecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEE
Q 023426          197 YITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ  275 (282)
Q Consensus       197 ~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iq  275 (282)
                      .|+||+|+|...+.+..|+|.++|++ .++|++.+|++|++++++|+++|+|||+||+|+|||||++||.+||||||+||
T Consensus       160 ~itpdtlq~~~ker~~~p~FlvtG~Ld~t~c~~t~PltGeltVe~seaaI~Sie~qLvRVEtcgc~Egy~~dateIQsiQ  239 (313)
T KOG2717|consen  160 YITPDTLQHPLKERIKTPGFLVTGKLDATQCSLTDPLTGELTVEASEAAITSIEIQLVRVETCGCGEGYVTDATEIQSIQ  239 (313)
T ss_pred             EEChHHhhccchhhccCCceEEEeeecceeeEecCCccceEEEEeeccceeEEEEEEEEEEEeecccceecccceeeeEE
Confidence            99999998843445788999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             eecccc
Q 023426          276 MEMSVA  281 (282)
Q Consensus       276 I~dg~~  281 (282)
                      |+||+.
T Consensus       240 IADGdV  245 (313)
T KOG2717|consen  240 IADGDV  245 (313)
T ss_pred             eccCcc
Confidence            999975

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=100.00  E-value=1.2e-53  Score=393.75  Aligned_cols=196  Identities=31%  Similarity=0.521  Sum_probs=153.4

Q ss_pred             CcCCCCcEeEEEEEEeCC--ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcccCCCceEee
Q 023426           48 IYRPSEPLQGKIVIKSSS--SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVP  125 (282)
Q Consensus        48 vY~~GE~VsG~V~i~~~~--~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~Lp~G~~~fP  125 (282)
                      +|++||+|+|+|+|++++  +++|+||+|++.|+            +|++|++.+|++|++.+++|+++|+|++|++ ||
T Consensus        34 iY~~gE~V~G~V~I~~~~gk~~~H~GI~l~lvG~------------ie~~~~~~k~~~f~~~~~eL~~~G~l~~~~t-~p  100 (275)
T PF03643_consen   34 IYSDGETVSGKVVITSKPGKSLEHQGIKLELVGQ------------IEAFYDSGKPIEFLSLSIELAPPGKLPEGKT-FP  100 (275)
T ss_dssp             EEETC--EEEEEEEEESSTS-EEES-EEEEEEEE------------EEEGCCTT-EEEEEEEEEEEE-SEEE-S-EE-EE
T ss_pred             eEcCCCEEEEEEEEEECCCCceEEeeEEEEEEEe------------EeEeccCCCceEeEEeeEEEcCCcccCCCcE-Ee
Confidence            899999999999999987  99999999999876            5778999999999999999999999999998 99


Q ss_pred             eEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCCCCceeEEEecccccCC
Q 023426          126 FSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRH  205 (282)
Q Consensus       126 F~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~~~~pv~f~I~~dtl~~  205 (282)
                      |+|++.++       .||||||+|++|||+|||+|.|+|  +|+++++||||+...    ..|+...+++++++.+    
T Consensus       101 FeF~~~~k-------~yETY~G~~v~i~Y~lrv~v~R~~--~~i~k~~ef~V~~~~----~~p~~~~~ik~evgie----  163 (275)
T PF03643_consen  101 FEFPLVEK-------PYETYHGVNVNIRYFLRVTVKRSY--KDISKEQEFWVQNFS----ITPESNQPIKMEVGIE----  163 (275)
T ss_dssp             EEE-SB----------S--EE-SSEEEEEEEEEEE--SS--S-EEEEEEEEEE-EB------------EEEEECET----
T ss_pred             eEeCCCCC-------CCccEeeeEEEEEEEEEEEEEccC--CCcceEEEEEEEecc----CCCCCCCCcccccCCC----
Confidence            99999865       799999999999999999999999  589999999997542    2455667788887642    


Q ss_pred             CccCCccccceEEEEEE-eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEEeecccc
Q 023426          206 PLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVA  281 (282)
Q Consensus       206 ~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iqI~dg~~  281 (282)
                              +.+||+|+| +++|||+|+|+|+|+|+++++|||||||||+|+||||+++++++|+|+||+||||||+.
T Consensus       164 --------~~lhief~~~k~~~~l~d~i~G~i~f~lv~~kIk~~elqLiR~Et~g~~~~~~~e~t~i~~~eImDG~p  232 (275)
T PF03643_consen  164 --------DCLHIEFEYDKSKYHLKDVITGKIYFLLVRIKIKSMELQLIRVETCGCGENYAKESTEIQKIEIMDGAP  232 (275)
T ss_dssp             --------TTEEEEEEES-SEEETT-EEEEEEEEEEESS-EEEEEEEEEEEEEECECCCEEEEEEEEEEEEEESS--
T ss_pred             --------ccEEEEEEEcccceECCCCEEEEEEEEEEeecceEEEEEEEEEEEEecCCcccccceEEEEEEeecCCc
Confidence                    135899999 89999999999999999999999999999999999999999999999999999999974

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-50  Score=357.95  Aligned_cols=195  Identities=16%  Similarity=0.319  Sum_probs=178.1

Q ss_pred             CcCCCCcEeEEEEEEeCC--ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcccCCCceEee
Q 023426           48 IYRPSEPLQGKIVIKSSS--SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVP  125 (282)
Q Consensus        48 vY~~GE~VsG~V~i~~~~--~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~Lp~G~~~fP  125 (282)
                      +|++||+|+|+|.|++++  +++|+||+|+++|++++            +|++++.++|.+.+.+||+||+|.+.+ .||
T Consensus        41 lf~dgEtv~G~V~l~lk~gkkleH~GikiefiGqIe~------------~~drgn~~eF~~lv~eLa~pGel~~~~-~fp  107 (301)
T KOG3063|consen   41 LFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIGQIEM------------YYDRGNFHEFTSLVRELARPGELTQSQ-SFP  107 (301)
T ss_pred             eEecCCeeeeEEEEEEcCCcccccCceEEEEEEEEEE------------EecCCcHHHHHHHHHhhcCCcceeecc-cCC
Confidence            899999999999999885  89999999999999766            566666688999999999999999887 499


Q ss_pred             eEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCCCCceeEEEecc-cccC
Q 023426          126 FSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQ-DTQR  204 (282)
Q Consensus       126 F~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~~~~pv~f~I~~-dtl~  204 (282)
                      |+|...+       ++||||.|+|+++||++||++.|.+  +|++++++|||+....    .|+.+++++|+++. ||| 
T Consensus       108 FeF~~ve-------kpyEsY~G~NV~lrY~lkvTv~Rr~--~di~ke~d~~V~~~~~----~P~~nn~IkmeVGIedCL-  173 (301)
T KOG3063|consen  108 FEFPHVE-------KPYESYIGKNVRLRYFLKVTVSRRL--TDIVKEKDLVVHNLST----YPEINNSIKMEVGIEDCL-  173 (301)
T ss_pred             ccccccc-------cchhhhcCcceEEEEEEEEEEEech--hhhhhhhheeeEeccc----CCCCCCceeEeechhhce-
Confidence            9999886       4999999999999999999999998  4999999999987643    67788899999984 576 


Q ss_pred             CCccCCccccceEEEEEE-eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEEeecccc
Q 023426          205 HPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVA  281 (282)
Q Consensus       205 ~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iqI~dg~~  281 (282)
                                  ||+++| |++|||+|+|.|+|||+++|++|||||++|+|+||+|++++++.|+++|.++|||||+-
T Consensus       174 ------------HIEFEYnKskYhLkdvIvGkIYFlLvRikIk~Mel~iikrEstG~gpn~~~e~eTiakyeIMDGap  239 (301)
T KOG3063|consen  174 ------------HIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELSIIKRESTGTGPNTYVETETIAKYEIMDGAP  239 (301)
T ss_pred             ------------EEEEEecccccchhheEEeeEEEEEEEEEeeeeEEEEEEeecccCCCcceeccceeeeEEeccCCC
Confidence                        688888 99999999999999999999999999999999999999999999999999999999974

>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]

Probab=99.92  E-value=2.4e-23  Score=201.19  Aligned_cols=215  Identities=24%  Similarity=0.303  Sum_probs=164.7

Q ss_pred             CeeEEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecC-cc--------e---eEEEeecceec
Q 023426           34 DMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGG-SA--------G---VVESLYGVIKP  101 (282)
Q Consensus        34 ~m~~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~-~~--------g---~~e~~~~~~~~  101 (282)
                      .|+.++|.||++..+|.+||.|+|+|++++.+++++++|+|++.|.+++.|... +.        +   .....|.  ..
T Consensus         3 ~~~~~~i~~d~~~~iy~~G~~vsG~v~l~~~~~~~~~~i~l~~~G~~~t~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~   80 (427)
T KOG3780|consen    3 TMSSFEIVLDNPEAIYFPGEPVSGSVVLSTKEPIKVRAIKLQLKGRARTSWSESERGTKLNSKSEGSIKSSTVNYT--AK   80 (427)
T ss_pred             CcceEEEEeCCCccccCCCCeEEEEEEEEeCCccceeEEEEEEEEeEEEeecccccccccccccccccccceEEee--ce
Confidence            456799999999999999999999999999999999999999999999999742 11        0   1111111  12


Q ss_pred             EEEeeee--EEeeCCc--c--cCCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEE
Q 023426          102 IKILKKS--QEIRTSG--R--IGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEF  175 (282)
Q Consensus       102 ~~~~~~~--~~la~~G--~--Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF  175 (282)
                      .++++..  .|-+.+|  .  |++|.|+|||+|+||.+||       +||+|.+|+|||+|+|+++|||.. +....+.|
T Consensus        81 ~~y~~~~~~~~~~~~g~~~~~l~~G~~~~pF~~~LP~~~P-------~Sfeg~~G~irY~vk~~idr~~~~-~~~~~~~~  152 (427)
T KOG3780|consen   81 ETYLDSKTILWTSSNGSNSRVLPPGNYEFPFSFTLPLNLP-------PSFEGKFGHVRYFVKAEIDRPWKL-NKKNRKPF  152 (427)
T ss_pred             EEEeeeeeEEeeccCCCCceecCCCceEEeEeccCCCCCC-------CceeeCCceEEEEEEEEEecCCCC-CccceeeE
Confidence            4444442  2344566  4  8999999999999998744       699999999999999999999975 79999999


Q ss_pred             EEEecCcccccCCCCCceeEEEecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEE
Q 023426          176 IVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLL  253 (282)
Q Consensus       176 ~V~~~~~dl~~~p~~~~pv~f~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLi  253 (282)
                      .| ....|++..|....++.+.-.+ .+..  + .+..+.+.++..+ ++.|-.++.+...+.++ .++..++.+++.|+
T Consensus       153 ~V-~~~~~ln~~p~~~~~~~~~~~k-~~~~--~-~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~  227 (427)
T KOG3780|consen  153 TV-IETVDLNSSPSLLEPIISKASK-KLGC--V-CFSSGPVSLELTIPKTGYVPGETIPVTLEIENKSSRTIKKVKAKLI  227 (427)
T ss_pred             EE-ecccccccCccccCcchhhhhh-eeeE--E-EecCCcEEEEEEcccccCcCCccEEEEEEEecCCCCcceeeEEEEE
Confidence            98 5566666555544544333222 1100  1 1344567788888 78899999999999998 77999999999999


Q ss_pred             EEEEEEeCCc
Q 023426          254 RMESILLGEK  263 (282)
Q Consensus       254 R~Et~g~~~~  263 (282)
                      ++.++.....
T Consensus       228 q~~~~~~~~~  237 (427)
T KOG3780|consen  228 QKISYLAFSY  237 (427)
T ss_pred             EEEEEEeecC
Confidence            9999987653

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=99.89  E-value=3.2e-24  Score=177.23  Aligned_cols=133  Identities=23%  Similarity=0.350  Sum_probs=88.4

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecC-cceeEEEe--ecce---ecEEEeeeeEEe
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGG-SAGVVESL--YGVI---KPIKILKKSQEI  111 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~-~~g~~e~~--~~~~---~~~~~~~~~~~l  111 (282)
                      |+|.||+++.+|++||.|+|+|.|.+.++++.++|+|++.|.+.+.|... ..+.....  ....   ....+++....+
T Consensus         1 ~~I~ld~~~~~y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (149)
T PF00339_consen    1 FEIELDNPKPVYFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQL   80 (149)
T ss_dssp             EEEEES-SEEEEESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHH
T ss_pred             CEEEECCCCCEECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEe
Confidence            68999999999999999999999999999999999999999999999843 22111110  0000   012333332222


Q ss_pred             e----CCcccCCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEE
Q 023426          112 R----TSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVE  178 (282)
Q Consensus       112 a----~~G~Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~  178 (282)
                      .    ..+.|++|.|+|||+|+||.+       +++||+|.+++|+|.|+|.|+|||. .+...+++|+|.
T Consensus        81 ~~~~~~~~~l~~G~~~fpF~f~LP~~-------lP~S~~~~~g~I~Y~l~a~l~~~~~-~~~~~~~~~~v~  143 (149)
T PF00339_consen   81 WGSEDGPNILPPGEYEFPFEFQLPSN-------LPSSFEGSHGSIRYKLKATLDRPGK-KDHKAKREFTVV  143 (149)
T ss_dssp             HHH--------C-TTEEEEEE---TT-------S--SEEEE-SEEEEEEEEEESSTTS-E--CGGEEEEEE
T ss_pred             eeeccceecccCCCEEEEEEEECCCC-------CCceEeccCcCEEEEEEEEEECCCC-CCcEEEEEEEEE
Confidence            1    145799999999999999987       5679999999999999999999996 479999999993

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=98.00  E-value=0.00041  Score=55.74  Aligned_cols=122  Identities=13%  Similarity=0.233  Sum_probs=68.1

Q ss_pred             EEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcc
Q 023426           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR  116 (282)
Q Consensus        37 ~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~  116 (282)
                      .+.+.+++  ..|.+||.+.-.+.|++..+.+.++|++++.-.....-.....       +.......+.   .....+-
T Consensus         6 ~~~~~i~~--~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~-------~~~~~~~~v~---~~~~~~~   73 (136)
T PF02752_consen    6 SLSISIPR--TAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKD-------ESKSEKRVVA---KSKNCGV   73 (136)
T ss_dssp             EEEEEES---SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS-----------S-EEEEEEEE---EEECCEB
T ss_pred             EEEEEECC--CEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccc-------cceEEEEEEE---EEecCCc
Confidence            36677755  6799999999999999999999999999998776543111100       0000011111   1111222


Q ss_pred             cCCCceEee--eEEEcCCCCCcccccccceE--EeeeeEEEEEEEEEEEecccCCCceEEEEEEE
Q 023426          117 IGSGTTEVP--FSMNLKQHGEENLERFYETF--HGADINIQYLVTVDIMRGYLHKSLSATVEFIV  177 (282)
Q Consensus       117 Lp~G~~~fP--F~F~Lp~~~~~~~~~l~ESy--~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V  177 (282)
                      .+.+...|-  ..|.+|..       +..|.  .|..++|.|.|++++.-++...++..+.++++
T Consensus        74 ~~~~~~~~~~~~~l~lP~~-------~~~s~~~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I  131 (136)
T PF02752_consen   74 DPGSSGSFEFNIQLQLPSN-------LPPSTSTNSRLIQVEYQLEVTVKLSGCTSDLRLELPITI  131 (136)
T ss_dssp             -B-TTEEEEEEEEE------------B-----CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEE
T ss_pred             cCCCCceEEEEEEEcCCCc-------cCcccccCCcEEEEEEEEEEEEEECCceeEEEEEccEEE
Confidence            333444455  78888854       33355  89999999999999998853345666666665

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=97.88  E-value=0.00095  Score=60.33  Aligned_cols=117  Identities=17%  Similarity=0.169  Sum_probs=77.8

Q ss_pred             eEEEEEECCCCCCcCCCCcEeEEEEEEeCC-ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCC
Q 023426           36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSS-SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTS  114 (282)
Q Consensus        36 ~~~~I~fd~~~~vY~~GE~VsG~V~i~~~~-~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~  114 (282)
                      +++|-+|+++.  |+|||+|+|.|.|+=.. .-+..+|.+.+.=.++..-..+..      .   ....+  ....++.+
T Consensus        13 akVDT~L~~~~--~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~------~---~~~~~--~~~~v~~~   79 (218)
T PF07070_consen   13 AKVDTVLEKPS--VRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEY------T---QEVEL--ARVRVSGP   79 (218)
T ss_pred             ceEEEEECCCC--ccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeE------E---EEEEE--EEEEeCCC
Confidence            45899998755  99999999999999554 678888888887554442111100      0   00111  12345555


Q ss_pred             cccCCCc-eEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEE
Q 023426          115 GRIGSGT-TEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIV  177 (282)
Q Consensus       115 G~Lp~G~-~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V  177 (282)
                      -.|.+|. +++||+|+||...|.       |-    +..+|+++-.++=.+. -|-.-...+.|
T Consensus        80 f~I~~ge~~~iPF~~~lP~etPi-------T~----~~~~v~l~T~LdI~~a-vD~~D~D~i~V  131 (218)
T PF07070_consen   80 FTIEPGEEKEIPFSFPLPWETPI-------TE----GGMRVWLRTGLDIAGA-VDPGDLDPIEV  131 (218)
T ss_pred             EEECCCCEEEEeEEEECCCCCCc-------cC----CCcEEEEEEEEEeCCC-CCCCCceeEEE
Confidence            5665554 589999999976432       22    5889999999988875 36666677777

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

>KOG3865 consensus Arrestin [Signal transduction mechanisms]

Probab=96.40  E-value=0.18  Score=48.00  Aligned_cols=200  Identities=11%  Similarity=0.204  Sum_probs=105.1

Q ss_pred             EEEEECCCCCC--cCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCc
Q 023426           38 VEIKLSRSNRI--YRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSG  115 (282)
Q Consensus        38 ~~I~fd~~~~v--Y~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G  115 (282)
                      +++.+-+-+=+  -.-=|+|.|.|.|+.. =++-|-|.+.+..  ...+.+.....+-.-|.    -+++-.+..+-|++
T Consensus        17 iT~YLgkRDFvDhvd~vdPvDGvVlvDpe-YlK~RKvfv~L~c--aFRYGREDldVlGLtFr----KdL~~~~~Qv~Pp~   89 (402)
T KOG3865|consen   17 ITVYLGKRDFVDHVDQVDPVDGVVLVDPE-YLKDRKVFVQLTC--AFRYGREDLDVLGLTFR----KDLYLATVQVYPPP   89 (402)
T ss_pred             EEEEecccccccccccccccceeEEEChH-HhccceEEEEEEe--eeecccccceeeeeEEE----eeeEEEEEEeeCCC
Confidence            56666542211  1123789999999733 4555666665532  22222222211211121    12333333444543


Q ss_pred             c-------c------CCCceEeeeEEEcCCCCCcccc-cccceEEeeeeEEEEEEEEEEEecccCCCce-EEEEEEEEec
Q 023426          116 R-------I------GSGTTEVPFSMNLKQHGEENLE-RFYETFHGADINIQYLVTVDIMRGYLHKSLS-ATVEFIVETD  180 (282)
Q Consensus       116 ~-------L------p~G~~~fPF~F~Lp~~~~~~~~-~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~-~~~eF~V~~~  180 (282)
                      .       |      .=|.+.|||-|+.|+++|--+- .+-..=.|+---|.|.||+-+--.---+.+. -.....+ .+
T Consensus        90 ~~~~plT~lQErLlkKLG~nAyPF~f~~pp~~P~SVtLQp~p~D~gKpcGVdyevkaF~~~s~edk~hKr~sVrL~I-RK  168 (402)
T KOG3865|consen   90 EDSRPLTRLQERLLKKLGSNAYPFTFEFPPNLPCSVTLQPGPEDTGKPCGVDYEVKAFVADSEEDKIHKRNSVRLVI-RK  168 (402)
T ss_pred             cCCCcccHHHHHHHHHhCCCCCceEEeCCCCCCceEEeccCCccCCCcccceEEEEEEecCCcccccccccceeeee-ee
Confidence            1       1      1356779999999988541000 0112456777789999999875432111111 1111111 21


Q ss_pred             CcccccCCCC--CceeEEEecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEEEEE
Q 023426          181 KADLLERPVS--PEMVVFYITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLLRME  256 (282)
Q Consensus       181 ~~dl~~~p~~--~~pv~f~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLiR~E  256 (282)
                      .+   .+|..  +.|. .+.+++-+       +..+..|++..+ +-.|+=+++|.-.+.+. +|+..+|+|.+.+.+.-
T Consensus       169 vq---yAP~~~GpqP~-~~v~k~Fl-------mS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~a  237 (402)
T KOG3865|consen  169 VQ---YAPLEPGPQPS-AEVSKQFL-------MSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVA  237 (402)
T ss_pred             ee---ecCCCCCCCch-hHhhHhhc-------cCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeec
Confidence            11   12211  1221 01112111       344567899989 77788899999888888 89999999999887653

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=96.35  E-value=0.093  Score=51.71  Aligned_cols=41  Identities=17%  Similarity=0.253  Sum_probs=36.1

Q ss_pred             EEEE-eccccCCCceEEEEEEEEec-CCeeEEEEEEEEEEEEE
Q 023426          219 TGKM-STQCSLLDPITGELTVEASS-VPIHSIDIHLLRMESIL  259 (282)
Q Consensus       219 ~g~~-k~~~~l~d~i~G~i~~~~s~-i~Ik~iElqLiR~Et~g  259 (282)
                      .+.+ |..|.++|.|.|-+.|..+. +++..+-+.|-..|++-
T Consensus       307 ~~~LsK~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~  349 (415)
T PF08737_consen  307 RLSLSKPAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVN  349 (415)
T ss_pred             EEEecCCCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeC
Confidence            4455 78899999999999999888 99999999999999963

>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []

Probab=96.15  E-value=0.0069  Score=53.62  Aligned_cols=44  Identities=16%  Similarity=0.325  Sum_probs=38.5

Q ss_pred             eCCcccCCCceEeeeEEEcCCCCCcccccccceEE---eeeeEEEEEEEEEEEe
Q 023426          112 RTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFH---GADINIQYLVTVDIMR  162 (282)
Q Consensus       112 a~~G~Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~---G~~g~vrY~vkv~i~R  162 (282)
                      +.+-.|+.|.|.|||+|-+|..       |+.|-.   +..++|.|.+.|+..-
T Consensus        42 ~~~t~l~~G~h~fPFS~LiPG~-------LPaS~~lgs~~l~~I~Yel~A~a~~   88 (191)
T PF13002_consen   42 THPTTLTKGSHAFPFSYLIPGH-------LPASMDLGSTPLVSIKYELKAEATY   88 (191)
T ss_pred             cCccccCCCcccCCeeEECCCC-------CccccccCCCCcEEEEEEEEEEEEE
Confidence            3455799999999999999976       667888   8899999999999887

It is also found in other sequences and is related to the arrestin N-terminal fold [].

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=94.64  E-value=0.29  Score=38.92  Aligned_cols=50  Identities=14%  Similarity=0.149  Sum_probs=38.1

Q ss_pred             cceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEEEEEEEEeCCc
Q 023426          214 GGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEK  263 (282)
Q Consensus       214 ~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLiR~Et~g~~~~  263 (282)
                      +..+++..+ ++.|..+|.+..++.++ .++.+|++|++.|+|+-++.+..+
T Consensus         3 g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~   54 (136)
T PF02752_consen    3 GKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGG   54 (136)
T ss_dssp             EEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS--
T ss_pred             CEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeec
Confidence            345788888 78899999999998888 889999999999999999987653

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=93.80  E-value=0.5  Score=42.81  Aligned_cols=70  Identities=14%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             ccccceEEEEEE-eccccCCCceEEEEEEE--EecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEEeeccc
Q 023426          211 LKSGGFKVTGKM-STQCSLLDPITGELTVE--ASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSV  280 (282)
Q Consensus       211 ~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~--~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iqI~dg~  280 (282)
                      ++++.=++.-.+ +..|..++.+.|++.+.  .++-.|.+|+|.|+.+=..-.+++..+..-+++++++.++.
T Consensus         8 ~GiG~akVDT~L~~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f   80 (218)
T PF07070_consen    8 IGIGGAKVDTVLEKPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPF   80 (218)
T ss_pred             cCCCCceEEEEECCCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCE
Confidence            455677888888 88999999999999999  79999999999999765555666667788899999998864

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1

Probab=92.57  E-value=0.5  Score=46.99  Aligned_cols=36  Identities=17%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             CcCCCCcEeEEEEEEeCC--ceeEeeEEEEEEEEEEEE
Q 023426           48 IYRPSEPLQGKIVIKSSS--SIFHYGIHLTVNGSANLQ   83 (282)
Q Consensus        48 vY~~GE~VsG~V~i~~~~--~l~h~gI~i~~~G~~~~~   83 (282)
                      =|..||.|.|-|+|++..  |+...=..|.++|.+.+-
T Consensus       159 Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v~  196 (438)
T PF04425_consen  159 EYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISVV  196 (438)
T ss_pred             cccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEEc
Confidence            599999999999999764  899999999999998763

Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.

>KOG3865 consensus Arrestin [Signal transduction mechanisms]

Probab=90.15  E-value=18  Score=34.85  Aligned_cols=45  Identities=22%  Similarity=0.403  Sum_probs=39.9

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEE
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQV   84 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~   84 (282)
                      +++.+|+  .+|+-||+++-.|.|++...-..+-||+.+.-.+++.+
T Consensus       197 LevsLDk--EiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~L  241 (402)
T KOG3865|consen  197 LEVSLDK--EIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICL  241 (402)
T ss_pred             EEEEecc--hheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEE
Confidence            7888876  68999999999999999998889999999998888753

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=88.71  E-value=9.8  Score=35.63  Aligned_cols=104  Identities=18%  Similarity=0.276  Sum_probs=54.2

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCccc
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRI  117 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~L  117 (282)
                      +.|.|.-.+..|.=.|.+.|+|.+.+.+ ++.+.+.|.+. ..++.-.+.+. ..|+       .++-  ..++ -+|.-
T Consensus       166 lhief~~~k~~~~l~d~i~G~i~f~lv~-~kIk~~elqLi-R~Et~g~~~~~-~~e~-------t~i~--~~eI-mDG~p  232 (275)
T PF03643_consen  166 LHIEFEYDKSKYHLKDVITGKIYFLLVR-IKIKSMELQLI-RVETCGCGENY-AKES-------TEIQ--KIEI-MDGAP  232 (275)
T ss_dssp             EEEEEEES-SEEETT-EEEEEEEEEEES-S-EEEEEEEEE-EEEEECECCCE-EEEE-------EEEE--EEEE-ESS--
T ss_pred             EEEEEEEcccceECCCCEEEEEEEEEEe-ecceEEEEEEE-EEEEEecCCcc-cccc-------eEEE--EEEe-ecCCc
Confidence            5566654556799999999999887554 44444444443 22221111110 0110       1111  1123 56766


Q ss_pred             CCCceEeeeEEEcCCCCCcccccccceEEeee--eEEEEEEEEEEE
Q 023426          118 GSGTTEVPFSMNLKQHGEENLERFYETFHGAD--INIQYLVTVDIM  161 (282)
Q Consensus       118 p~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~--g~vrY~vkv~i~  161 (282)
                      -.|. .+||-+-||.-      .+..||...+  -+|+|+|.+.|-
T Consensus       233 ~rge-~IPirl~l~~l------~l~Pt~~~~~~~FsV~y~lnlvli  271 (275)
T PF03643_consen  233 CRGE-SIPIRLFLPRL------FLCPTYKNVNNKFSVEYELNLVLI  271 (275)
T ss_dssp             -TT--EEEEEEECCCT-----------EEEECTTEEEEEEEEEEEE
T ss_pred             cccc-eeeEEEEcCCc------ccCCcchhcCCcEEEEEEEEEEEE
Confidence            6675 59999999953      4777999655  999999998763

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=86.00  E-value=13  Score=28.31  Aligned_cols=25  Identities=28%  Similarity=0.572  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeC
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSS   64 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~   64 (282)
                      +-|..||  .+|+|||+|.=++.+...
T Consensus         2 ~~i~TDr--~iYrPGetV~~~~~~~~~   26 (99)
T PF01835_consen    2 IFIQTDR--PIYRPGETVHFRAIVRDL   26 (99)
T ss_dssp             EEEEESS--SEE-TTSEEEEEEEEEEE
T ss_pred             EEEECCc--cCcCCCCEEEEEEEEecc
Confidence            3456666  689999999999987644

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>COG4326 Spo0M Sporulation control protein [General function prediction only]

Probab=84.58  E-value=5.4  Score=36.20  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             EEEEEECCCCCCcCCCCcEeEEEEEEeCC---ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeC
Q 023426           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSS---SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRT  113 (282)
Q Consensus        37 ~~~I~fd~~~~vY~~GE~VsG~V~i~~~~---~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~  113 (282)
                      ++|-.+.+  .+|+||+.|.|.|.|.=.+   .++---+++..+=.+++.=++   +..+.        .+.+    +.-
T Consensus        34 KVDt~L~~--~~~~PG~~v~g~vhv~GG~~AQdI~~I~LkL~t~Y~~evdDe~---~~~~~--------t~~n----~rl   96 (270)
T COG4326          34 KVDTVLQQ--EVLYPGQSVKGIVHVYGGATAQDIDNIELKLCTCYIAEVDDER---GQQQG--------TLAN----WRL   96 (270)
T ss_pred             hhhhhhhh--ccccCCceEEEEEEEecCchHhhhhhhhhhheeeEEEEecccc---ceeEE--------EEEE----Eee
Confidence            45544433  4799999999999998443   444434444443333332111   11111        0111    111


Q ss_pred             Cc--cc-CCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEE
Q 023426          114 SG--RI-GSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVE  178 (282)
Q Consensus       114 ~G--~L-p~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~  178 (282)
                      ++  ++ |...+.|||+|.||-+-|       =|    .|++.-+|+--+|-...- |.+-+.-.+|.
T Consensus        97 ~~~fTIqpgEe~~fpf~l~lP~~tP-------vT----~G~~~V~v~TgLDI~~ai-dp~D~D~l~Vr  152 (270)
T COG4326          97 PYAFTIQPGEERNFPFELSLPWNTP-------VT----IGDAKVWVETGLDIALAI-DPTDKDILTVR  152 (270)
T ss_pred             cceEEecCCceEeccEEEecCCCCc-------ee----ecceeEEEEeccchhccC-CCcccceEEEe
Confidence            22  23 334578999999997622       13    346777776666655432 44444445563

>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]

Probab=82.12  E-value=50  Score=31.88  Aligned_cols=118  Identities=15%  Similarity=0.118  Sum_probs=70.5

Q ss_pred             CCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeE-EeeCCcc-cCCCce
Q 023426           45 SNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQ-EIRTSGR-IGSGTT  122 (282)
Q Consensus        45 ~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~-~la~~G~-Lp~G~~  122 (282)
                      +...|.+||.+...+.|.+........+++++.=.+...-...+    +..     ........+ .....+. -+..+.
T Consensus       195 p~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~q~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~v~~~~~~  265 (427)
T KOG3780|consen  195 PKTGYVPGETIPVTLEIENKSSRTIKKVKAKLIQKISYLAFSYG----EHT-----KTKKSEKTLIKSRGSLEVAPRSED  265 (427)
T ss_pred             ccccCcCCccEEEEEEEecCCCCcceeeEEEEEEEEEEEeecCC----ccc-----cceeeeeEEeeeccccccCCCCcc
Confidence            45679999999999999998777777777777654433211100    000     000111111 1112222 233445


Q ss_pred             EeeeEEEcCCCCCcccccccceEE--eeeeEEEEEEEEEEEecc-cCCCceEEEEEEEEe
Q 023426          123 EVPFSMNLKQHGEENLERFYETFH--GADINIQYLVTVDIMRGY-LHKSLSATVEFIVET  179 (282)
Q Consensus       123 ~fPF~F~Lp~~~~~~~~~l~ESy~--G~~g~vrY~vkv~i~Rp~-~~~d~~~~~eF~V~~  179 (282)
                      .|-.+|.+|...       + |++  ...+++.|.+++.+.-+- ...++..+....+-.
T Consensus       266 ~~~~~~~iP~~~-------P-s~~~~~~~i~v~y~l~v~~~~~~~~~~~~~l~~pi~igt  317 (427)
T KOG3780|consen  266 KFEKELRIPPVP-------P-SILPDTPIIRVEYELKVTLKTSSLRHSELALELPIIIGT  317 (427)
T ss_pred             ccceEEEcCCCC-------C-ccCCCCceEEEEEEEEEEEecCcccccceeeeeceEEec
Confidence            677788888752       1 555  489999999999998762 134577777777754

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=80.94  E-value=21  Score=35.26  Aligned_cols=96  Identities=17%  Similarity=0.320  Sum_probs=57.3

Q ss_pred             CCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEE--EecC-cceeEEEeecceecEEEeeeeEEeeCCcccCCCceE
Q 023426           47 RIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQ--VRGG-SAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTE  123 (282)
Q Consensus        47 ~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~--~~~~-~~g~~e~~~~~~~~~~~~~~~~~la~~G~Lp~G~~~  123 (282)
                      ..|+-||+|.|.+.+.....+++.++.+.++=.=.+.  +.-+ +...     ++. .........+.+-+.     ...
T Consensus       313 ~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~~~-----~~~-~~~~~~~~~e~~~~~-----~~~  381 (415)
T PF08737_consen  313 PAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSAKI-----NRV-TRKVHAEHHEICLDS-----RSR  381 (415)
T ss_pred             CCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccccc-----ccc-EEEEEEEEeeeecCC-----cce
Confidence            3799999999999998776688888888887432111  0000 0000     000 011111111221111     113


Q ss_pred             eeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEE
Q 023426          124 VPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDI  160 (282)
Q Consensus       124 fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i  160 (282)
                      -+|.+..|..++|       +|.=..+.++|.|+.+.
T Consensus       382 ~~f~l~IP~~~tp-------~F~T~~v~lkW~LrfeF  411 (415)
T PF08737_consen  382 TSFSLPIPLSATP-------QFQTSGVSLKWRLRFEF  411 (415)
T ss_pred             EEEEeeCCCCCCC-------ceEeCCEEEEEEEEEEE
Confidence            5899999987554       88888899999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	1e-30
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	7e-30

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens} Length = 341

 Score =  116 bits (291), Expect = 1e-30
 Identities = 37/247 (14%), Positives = 80/247 (32%), Gaps = 46/247 (18%)

Query: 37  TVEIKLSRSNR----IYRPSEPLQGKIVI---KSSSSIFHYGIHLTVNGSANLQVRGGSA 89
             E+K          ++   E + GK+ +   +    + H GI +   G           
Sbjct: 28  MAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQ---------- 77

Query: 90  GVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGAD 149
             +E         + +   +E+   G +    +   F           +E+ YE++ GA+
Sbjct: 78  --IELFNDKSNTHEFVNLVKELALPGELTQSRS-YDFEFM-------QVEKPYESYIGAN 127

Query: 150 INIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLP 209
           + ++Y + V I+R      L    + IV                       D      + 
Sbjct: 128 VRLRYFLKVTIVRRL--TDLVKEYDLIVHQ----------------LATYPDVNNSIKME 169

Query: 210 ELKSGGFKVTGK-MSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISET 268
                   +  +   ++  L D I G++      + I  +++ L++ E   +G    +ET
Sbjct: 170 VGIEDXLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTET 229

Query: 269 SLIQTTQ 275
             I   +
Sbjct: 230 ETIAKYE 236

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A Length = 340

 Score =  114 bits (286), Expect = 7e-30
 Identities = 34/247 (13%), Positives = 81/247 (32%), Gaps = 46/247 (18%)

Query: 37  TVEIKLSRSNR----IYRPSEPLQGKIVIKS---SSSIFHYGIHLTVNGSANLQVRGGSA 89
             E K     +    ++   E + GK+ +     +  + H GI +   G           
Sbjct: 28  RAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQ---------- 77

Query: 90  GVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGAD 149
             +E  Y      + +   +++   G I        F          ++E+ YE++ G +
Sbjct: 78  --IELYYDRGNHHEFVSLVKDLARPGEITQSQA-FDFEFT-------HVEKPYESYTGQN 127

Query: 150 INIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLP 209
           + ++Y +   I R      +   ++ +V T        P     +   +  +        
Sbjct: 128 VKLRYFLRATISRRL--NDVVKEMDIVVHTLS----TYPELNSSIKMEVGIEDC------ 175

Query: 210 ELKSGGFKVTGK-MSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISET 268
                   +  +   ++  L D I G++      + I  ++I +++ E+   G  +  E 
Sbjct: 176 ------LHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHEN 229

Query: 269 SLIQTTQ 275
             I   +
Sbjct: 230 DTIAKYE 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	100.0
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	100.0
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	99.71
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	99.6
3ugu_A	380	S-arrestin; arrestin fold, signal termination, GPC	99.1
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	96.85
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	96.48
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	96.42
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	96.39
3ugu_A	380	S-arrestin; arrestin fold, signal termination, GPC	90.0
2hr0_A	645	Complement C3 beta chain; complement component C3B	81.23

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.9e-51  Score=383.62  Aligned_cols=195  Identities=18%  Similarity=0.302  Sum_probs=176.7

Q ss_pred             CcCCCCcEeEEEEEEeCC---ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcccCCCceEe
Q 023426           48 IYRPSEPLQGKIVIKSSS---SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEV  124 (282)
Q Consensus        48 vY~~GE~VsG~V~i~~~~---~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~Lp~G~~~f  124 (282)
                      +|++||+|+|+|+|++++   +++|+||+|++.|++++.|+            +.++++|++.+.+|+++|+|++| |+|
T Consensus        43 vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~~------------~~~~~~fls~~~eL~~~G~L~~g-~~f  109 (341)
T 2fau_A           43 LFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFND------------KSNTHEFVNLVKELALPGELTQS-RSY  109 (341)
T ss_dssp             EECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEECST------------TCCEEEEEEEEEEEECSEEECSC-EEE
T ss_pred             cCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEEec------------CCCcEEEEEEEEEEcCCCccCCC-cEE
Confidence            899999999999999986   89999999999999888764            34558899999999999999999 999


Q ss_pred             eeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCCCCceeEEEecc-ccc
Q 023426          125 PFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQ-DTQ  203 (282)
Q Consensus       125 PF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~~~~pv~f~I~~-dtl  203 (282)
                      ||+|++|++       +||||+|+||+|||+|||+|+|||+  |++++++|||+...    ..|..+.|++|++++ |||
T Consensus       110 pF~F~~~~~-------~~eSy~G~~~~IrY~vrv~i~R~~~--di~~~~eF~V~~~~----~~p~~~~pi~~evgied~L  176 (341)
T 2fau_A          110 DFEFMQVEK-------PYESYIGANVRLRYFLKVTIVRRLT--DLVKEYDLIVHQLA----TYPDVNNSIKMEVGIEDXL  176 (341)
T ss_dssp             EEEECSCCC-------CSCCEECSSEEEEEEEEEEECCSSS--CEEEEEEEEECCCB----CCCCCCCCEEEEEEETTTE
T ss_pred             eeEeCCCCC-------CCcceEeeEEEEEEEEEEEEEecCc--ceeEEEEEEEEeCC----CCCCCCCCeEEEEeccccE
Confidence            999999854       9999999999999999999999995  89999999996632    346677899999998 665


Q ss_pred             CCCccCCccccceEEEEEE-eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEEeecccc
Q 023426          204 RHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVA  281 (282)
Q Consensus       204 ~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iqI~dg~~  281 (282)
                                   ++++.+ ++.|+++|+|+|+|+|++|+++||+||++|+|+|||++++++.+|+++||++|||||..
T Consensus       177 -------------~ieF~~~ks~y~l~d~I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImDG~p  242 (341)
T 2fau_A          177 -------------HIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP  242 (341)
T ss_dssp             -------------EEEEEESCSEEETTCEEEEEEEEEEECSCEEEEEEEEEEEEEESCGGGCEEEEEEEEEEECCCC--
T ss_pred             -------------EEEEEEccccccCCCeEEEEEEEEEeccceEEEEEEEEEEEEEcCCCCeeeEEEEEEEEEEeCCCc
Confidence                         566677 89999999999999999999999999999999999999999999999999999999973

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=100.00  E-value=6.6e-50  Score=377.41  Aligned_cols=207  Identities=15%  Similarity=0.294  Sum_probs=179.7

Q ss_pred             EEEEEECCCCC----CcCCCCcEeEEEEEEeC---CceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeE
Q 023426           37 TVEIKLSRSNR----IYRPSEPLQGKIVIKSS---SSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQ  109 (282)
Q Consensus        37 ~~~I~fd~~~~----vY~~GE~VsG~V~i~~~---~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~  109 (282)
                      .+++..++..+    +|++||+|+|+|+|+++   ++++|+||+|+++|++++.|+.            .++++|++...
T Consensus        28 ~~~~~~~~~~~~~~pvY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~------------~~~~~f~~~~~   95 (340)
T 2r51_A           28 RAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDR------------GNHHEFVSLVK   95 (340)
T ss_dssp             EEEEECTTSCEEEEEEEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGT------------TCCEEEEEEEE
T ss_pred             eEEeecCCCcEeecCcCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecC------------CCcEEEEEEEE
Confidence            35555554333    89999999999999999   8999999999999998886653            45588999999


Q ss_pred             EeeCCcccCCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCC
Q 023426          110 EIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPV  189 (282)
Q Consensus       110 ~la~~G~Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~  189 (282)
                      +|+++|+|++|+| |||+|+||++       +||||+|+||+|||+|||+|+|||+  |++++++|||+...    ..|+
T Consensus        96 eL~~pG~L~~G~~-fpF~F~lp~~-------l~eSy~G~~g~IrY~vkv~i~Rp~~--di~~~~eF~V~~~~----~~p~  161 (340)
T 2r51_A           96 DLARPGEITQSQA-FDFEFTHVEK-------PYESYTGQNVKLRYFLRATISRRLN--DVVKEMDIVVHTLS----TYPE  161 (340)
T ss_dssp             EEECSEEECSCEE-EEEEECSBCC-------CSCCEECSSEEEEEEEEEEECCSSC--CEEEEEEEEEECCC----CCCC
T ss_pred             EecCCCccCCCcE-EeeEeCCCCC-------CCcCeEeeeEEEEEEEEEEEEecCC--CceEEEEEEEEeCC----CCCc
Confidence            9999999999999 9999999965       8999999999999999999999995  89999999997643    2344


Q ss_pred             CCceeEEEecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEEEEeCCceeeee
Q 023426          190 SPEMVVFYITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISET  268 (282)
Q Consensus       190 ~~~pv~f~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et~g~~~~~~~e~  268 (282)
                      .+.|++++++.+            ..|+|+|++ ++.|+++|+|+|+|+|++|+++||+||++|+|+|||++++++++|+
T Consensus       162 ~~~pIk~Evgi~------------~cl~Ie~~~~ks~y~lgd~I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~~~e~  229 (340)
T 2r51_A          162 LNSSIKMEVGIE------------DCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHEN  229 (340)
T ss_dssp             CCCCEEEEEEET------------TTEEEEEEESCSEEETTCEEEEEEEEEEECSCEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             cCCCEeccccCC------------ceEEEEEEECcccccCCCeEEEEEEEEEeeceeEEEEEEEEEEEEEecCCCeeEEE
Confidence            455555554321            127999999 8999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEeecccc
Q 023426          269 SLIQTTQMEMSVA  281 (282)
Q Consensus       269 teiq~iqI~dg~~  281 (282)
                      ++||++|||||..
T Consensus       230 ~~i~k~eImdG~p  242 (340)
T 2r51_A          230 DTIAKYEIMDGAP  242 (340)
T ss_dssp             EEEEEEEEEESCC
T ss_pred             EEEEEEEEecCCc
Confidence            9999999999963

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=99.71  E-value=1.3e-16  Score=153.08  Aligned_cols=196  Identities=12%  Similarity=0.144  Sum_probs=128.2

Q ss_pred             EEEEEECCCCC--CcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecC--cceeEEEeecceecEEEeeeeEEee
Q 023426           37 TVEIKLSRSNR--IYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGG--SAGVVESLYGVIKPIKILKKSQEIR  112 (282)
Q Consensus        37 ~~~I~fd~~~~--vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~--~~g~~e~~~~~~~~~~~~~~~~~la  112 (282)
                      .++|.|.+-+=  .|..+|.|+|+|.|++. +++++.|.+++.+...- +.+.  -.|.  .|.   + ..|+....-+.
T Consensus        17 ~i~~yl~krdfvd~~~~~d~V~GvV~id~~-~lk~r~v~v~l~~~fry-gr~~~~v~g~--~f~---k-e~~~~~~~v~p   88 (393)
T 1g4m_A           17 KLTVYLGKRDFVDHIDLVEPVDGVVLVDPE-YLKERRVYVTLTCAFRY-GREDLDVLGL--TFR---K-DLFVANVQSFP   88 (393)
T ss_dssp             SCEEEESCSEEEECSSCBCCEEEEEECCHH-HHTTCEEEEEEEEEEEE-SCTTCCCTTT--CEE---E-EEEEEEEEEES
T ss_pred             eEEEEeCCceEEEecCCCCEEEEEEEEehh-HhcccEEEEEEEEEEEe-cCCcceeccc--ccc---e-eEEEEEEEEeC
Confidence            38888876442  46789999999999988 99999997777653211 1111  0110  011   1 11222222223


Q ss_pred             CCc--ccC-----------CCceEeeeEEEcCCCCCcccccccceEE--------eeeeEEEEEEEEEEEecccCCCceE
Q 023426          113 TSG--RIG-----------SGTTEVPFSMNLKQHGEENLERFYETFH--------GADINIQYLVTVDIMRGYLHKSLSA  171 (282)
Q Consensus       113 ~~G--~Lp-----------~G~~~fPF~F~Lp~~~~~~~~~l~ESy~--------G~~g~vrY~vkv~i~Rp~~~~d~~~  171 (282)
                      +++  +.|           +|.|.|||+|+||.++       +.||+        |++|+|||.|+|.++||+.  +...
T Consensus        89 ~~~~~~~~lt~lqe~l~~~~G~h~fPF~f~LP~~l-------PsSfelq~~~~d~G~~g~IrY~Vka~i~~~~~--~k~~  159 (393)
T 1g4m_A           89 PAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNL-------PCSVTLQPGPEDTGKACGVDYEVKAFCAENLE--EKIH  159 (393)
T ss_dssp             CSTTSCCCCCHHHHHHHHHSCTTEEEEEECCCTTS-------CCCEEEECCGGGGGGCEEEEEEEEEEEESSTT--SCCC
T ss_pred             CCCcccCccchhhhhhhccCCceEEEEEeeCCCCC-------CceEEEccccccCCCcEEEEEEEEEEEcCCcc--cccc
Confidence            333  233           9999999999999874       46998        9999999999999999963  3333


Q ss_pred             EEEEEEEecCcccccCCCCC-ceeEEEecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEE
Q 023426          172 TVEFIVETDKADLLERPVSP-EMVVFYITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSI  248 (282)
Q Consensus       172 ~~eF~V~~~~~dl~~~p~~~-~pv~f~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~i  248 (282)
                      +..|++ ....+++..|... .+...+..+...       +..+..+++..+ ++.|..+|.|.-.+.++ .|+..|+.|
T Consensus       160 K~~~v~-l~i~~l~~~p~~~~~~~~~e~~k~fc-------~~sG~l~l~~sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~I  231 (393)
T 1g4m_A          160 KRNSVR-LVIRKVQYAPERPGPQPTAETTRQFL-------MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKI  231 (393)
T ss_dssp             GGGEEE-EEEEEEECCCCCCSSCCCCEEEEECB-------SSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEE
T ss_pred             eEEEEE-EeccccccCchhhcCCCceEEEEEEE-------EcCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCCEEeEE
Confidence            333333 2122333333221 122223333211       234567899999 88899999999888888 889999999


Q ss_pred             EEEEEEEEE
Q 023426          249 DIHLLRMES  257 (282)
Q Consensus       249 ElqLiR~Et  257 (282)
                      ++.|+|..+
T Consensus       232 kv~L~Q~~~  240 (393)
T 1g4m_A          232 KISVRQYAD  240 (393)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999999884

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=99.60  E-value=2.8e-14  Score=136.61  Aligned_cols=200  Identities=11%  Similarity=0.116  Sum_probs=124.4

Q ss_pred             EEEEECCCCC--CcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeee--eEEeeC
Q 023426           38 VEIKLSRSNR--IYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKK--SQEIRT  113 (282)
Q Consensus        38 ~~I~fd~~~~--vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~--~~~la~  113 (282)
                      +++.+-+-+=  -....|.|.|.|+|+... ++.|.|.+.|.+.-.  +.+......-..|.    .+++..  .++-..
T Consensus        17 ~t~yl~krd~vd~~~~vd~vdGvV~vd~~~-lk~rkv~~~l~~~fr--yGred~~v~Gl~f~----kel~~~~~qv~p~~   89 (392)
T 1suj_A           17 LSIYLGKRDFVDHVEHVEPVDGVVLIDPEY-LKDRKVFVTLTCAFR--YGRDDLDLIGMSFR----KDLYSLATQVYPPE   89 (392)
T ss_dssp             EEEEESCSEEEECSSCBCCEEEEEEECTTT-SSSCEEEEEEEEEEE--EECCSSCCSSCEEE----EEEEEEEEEEESCC
T ss_pred             EEEEECCceEEeecCccCceeeEEEEcHHH-hccceEEEEEEEeec--cCCCchhcCcceEE----EEEEEEEEEEeCCC
Confidence            6666643211  245689999999999776 999999999985421  22111000000111    122222  222222


Q ss_pred             Cc-cc---------CCCceEeeeEEEcCCCCCccccccc-----ceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEE
Q 023426          114 SG-RI---------GSGTTEVPFSMNLKQHGEENLERFY-----ETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVE  178 (282)
Q Consensus       114 ~G-~L---------p~G~~~fPF~F~Lp~~~~~~~~~l~-----ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~  178 (282)
                      ++ .+         +.|.|.|||.|+||.+|||    .+     .+|+|++++|||.|||.++|||..+  ..+. +.|.
T Consensus        90 ~~~~~t~lQe~Ll~~~G~h~fPFsFqLP~~lPs----Sf~lqp~~~~eGk~g~VrY~VKa~i~~~~~dk--~~Kr-~tv~  162 (392)
T 1suj_A           90 TKEPLTPLQEKLMKKLGAHAYPFCFKMGTNLPC----SVTLQPGPDDTGKSCGVDFEVKAFCAENLEEK--IHKR-NSVQ  162 (392)
T ss_dssp             SCCCCCHHHHHHHHHHCSSEEEEEECCCSSCCC----CEEECCCTTCCSCCEEEEEEEEEEEESCTTSC--CCGG-GEEE
T ss_pred             CCccccHHHHHhhhcccCeeEeEEeeCCCCCCC----eEEeccCCccCCCceeEEEEEEEEEcCChhhc--cceE-EEEE
Confidence            22 12         7899999999999998664    22     2447999999999999999998422  1111 2221


Q ss_pred             ecCcccccCCCCC--ceeEEEecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEEE
Q 023426          179 TDKADLLERPVSP--EMVVFYITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLLR  254 (282)
Q Consensus       179 ~~~~dl~~~p~~~--~pv~f~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLiR  254 (282)
                      ....+++..|...  .| ..+..+..+       +..+..+++..+ +..|..+|+|.-.+.+. .|+..|+.|.+.|++
T Consensus       163 l~ir~l~~~P~~~~~~p-~~e~~k~f~-------~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q  234 (392)
T 1suj_A          163 LVIRKVQFAPANLGVAP-KTEITRQFM-------LSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQ  234 (392)
T ss_dssp             EEEEEEECCCSSCCCCC-CCEEEEEEE-------ETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEE
T ss_pred             EeeeccccCccccCCCC-eeEEEEEeE-------ecCCCEEEEEEeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEE
Confidence            1122333333221  12 112222111       234567899999 88899999999888888 889999999999999


Q ss_pred             EEEEE
Q 023426          255 MESIL  259 (282)
Q Consensus       255 ~Et~g  259 (282)
                      .-++-
T Consensus       235 ~~~v~  239 (392)
T 1suj_A          235 VTDVV  239 (392)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99863

>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A

Probab=99.10  E-value=1.3e-08  Score=96.49  Aligned_cols=199  Identities=10%  Similarity=0.136  Sum_probs=116.8

Q ss_pred             EEEEECCCCCC--cCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCc
Q 023426           38 VEIKLSRSNRI--YRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSG  115 (282)
Q Consensus        38 ~~I~fd~~~~v--Y~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G  115 (282)
                      +++.+-+-+=+  ...=|.|.|.|.|... -++-|-|-+.+...-  .+.+......-.-|.    -+++-...++-|+.
T Consensus        32 lt~YlgkRdfvdh~~~vdpvdGvv~vd~~-~~~~rkvf~~l~~~f--RYGred~dV~Gl~F~----kdl~~~~~qvyP~~  104 (380)
T 3ugu_A           32 VTIYLGKRDYIDHVERVEPVDGVVLVDPE-LVKGKRVYVSLTCAF--RYGQEDIDVMGLSFR----RDLYFSQVQVFPPV  104 (380)
T ss_dssp             EEEEESCSEEEECSSCBCCEEEEEEECHH-HHTTCEEEEEEEEEE--EECC------CCCEE----EEEEEEEEEEESCC
T ss_pred             EEEEecCceEEeecCcccccceEEEECHH-HhCCCEEEEEEEEEE--ecCCCccccccchhh----hhhhheeEEecCCC
Confidence            66666442211  1234889999999843 445566666655432  222211111100111    12222222332332


Q ss_pred             -------ccC------CCceEeeeEEEcCCCCCcccccccceE--------EeeeeEEEEEEEEEEEecc---cCCCceE
Q 023426          116 -------RIG------SGTTEVPFSMNLKQHGEENLERFYETF--------HGADINIQYLVTVDIMRGY---LHKSLSA  171 (282)
Q Consensus       116 -------~Lp------~G~~~fPF~F~Lp~~~~~~~~~l~ESy--------~G~~g~vrY~vkv~i~Rp~---~~~d~~~  171 (282)
                             .|+      -|.|.|||.|+||.++|       .||        .|+++.|+|.|||.++++|   ..+...+
T Consensus       105 ~~~~~lT~lQe~L~kKlG~nayPF~f~LP~~lP-------sSv~LQp~p~d~Gk~cgV~YeVKafia~~~~~~~dk~~Kr  177 (380)
T 3ugu_A          105 GASGATTRLQESLIKKLGANTYPFLLTFPDYLP-------CSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKK  177 (380)
T ss_dssp             SCCCCCCHHHHHHHHHHCTTEEEEEECCCSSCC-------CSEEECCCTTCCSCCEEEEEEEEEEEEBCCSSSSSBCCGG
T ss_pred             CCCCCCCHHHHHHHHHhCcCceeEEEeCCCCCC-------CEEEeccCCccCCCccceEEEEEEEEccCccccccccccc
Confidence                   122      38899999999999855       466        4888999999999999999   3222333


Q ss_pred             EEEEEEEecCcccccCCCCC-ceeEEEecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEE
Q 023426          172 TVEFIVETDKADLLERPVSP-EMVVFYITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSI  248 (282)
Q Consensus       172 ~~eF~V~~~~~dl~~~p~~~-~pv~f~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~i  248 (282)
                      ..-+.+..+   ++..|..+ .+-..++.+.-+       +..+..+++..+ +..|.-+|+|.-.+.+. +|+..|+.|
T Consensus       178 ~sV~L~Irk---lq~aP~~~~~~P~~e~~K~F~-------~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~I  247 (380)
T 3ugu_A          178 SSVRLLIRK---VQHAPRDMGPQPRAEASWQFF-------MSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKI  247 (380)
T ss_dssp             GEEEEEEEE---EEBCCSCCCCCCEEEEEEECT-------TCCCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEE
T ss_pred             ceEEEeeee---cccCCcccCCCCcceEEEEeE-------ecCCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEE
Confidence            222222121   11222111 112345554311       344667899999 78899999999888888 888999999


Q ss_pred             EEEEEEEEEEEe
Q 023426          249 DIHLLRMESILL  260 (282)
Q Consensus       249 ElqLiR~Et~g~  260 (282)
                      +++|++.-++-.
T Consensus       248 kv~L~Q~~~v~l  259 (380)
T 3ugu_A          248 KVLVEQVTNVVL  259 (380)
T ss_dssp             EEEEEEEEEECS
T ss_pred             EEEEEEEEEEEE
Confidence            999999998753

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=96.85  E-value=0.034  Score=53.04  Aligned_cols=127  Identities=13%  Similarity=0.183  Sum_probs=79.0

Q ss_pred             EEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcc
Q 023426           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR  116 (282)
Q Consensus        37 ~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~  116 (282)
                      .+++.+|+  ..|.|||+|.-.|.|++......+.|++.+...+++.           +|.+.+..   ...........
T Consensus       198 ~l~~sldk--~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~-----------~~s~~~~k---~~Va~~e~~~~  261 (393)
T 1g4m_A          198 HLEASLDK--EIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADIC-----------LFNTAQYK---CPVAMEEADDT  261 (393)
T ss_dssp             EEEEEESC--SEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEEC-----------SSBCEEEE---EEEEEEEECCC
T ss_pred             EEEEEECC--ceEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEE-----------EecCCceE---EEEEEEecCCc
Confidence            36677765  6799999999999999999999999999999876442           11111111   11111221224


Q ss_pred             cCCCceEeeeEEEcCCCCCccccc---------c--cceEE-eeeeE-----------EEEEEEEEEEeccc-------C
Q 023426          117 IGSGTTEVPFSMNLKQHGEENLER---------F--YETFH-GADIN-----------IQYLVTVDIMRGYL-------H  166 (282)
Q Consensus       117 Lp~G~~~fPF~F~Lp~~~~~~~~~---------l--~ESy~-G~~g~-----------vrY~vkv~i~Rp~~-------~  166 (282)
                      +++|. ++.+.|.|++.-+|+.++         -  -.+.. ..-.+           |.|.|+|.++-++.       .
T Consensus       262 V~~gs-~~~~~~~L~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~~~~gi~VsY~vkV~l~v~~gg~~~~~~~  340 (393)
T 1g4m_A          262 VAPSS-TFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGLLGDLAS  340 (393)
T ss_dssp             BCTTE-EEEEEEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECCC--------
T ss_pred             CCCCC-EEeeEEEEcCCCCCcccccceeeccccccCCcccccceeecCCCCccccceEEEEEEEEEEEecCCCccccccc
Confidence            66664 478888886432220000         0  01111 12234           99999999999873       2


Q ss_pred             CCceEEEEEEEEec
Q 023426          167 KSLSATVEFIVETD  180 (282)
Q Consensus       167 ~d~~~~~eF~V~~~  180 (282)
                      .++..+.+|++-.+
T Consensus       341 ~~l~~~lPi~i~~p  354 (393)
T 1g4m_A          341 SDVAVELPFTLMHP  354 (393)
T ss_dssp             CEEEEEEEEEEECC
T ss_pred             ccEEEEeCEEEecC
Confidence            37999999998543

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=96.48  E-value=0.066  Score=50.14  Aligned_cols=121  Identities=15%  Similarity=0.204  Sum_probs=75.6

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCccc
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRI  117 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~L  117 (282)
                      +.|.|.=+...|.+||.|.|+|.+... .++.+.+.+.+.-.-.+. ...+. ..|+       .++.  ..++ -+|.-
T Consensus       176 l~Ie~~~~ks~y~lgd~I~G~I~f~~s-~i~Ik~iel~LiR~Et~~-~~~~~-~~e~-------~~i~--k~eI-mdG~p  242 (340)
T 2r51_A          176 LHIEFEYNKSKYHLKDVIVGKIYFLLV-RIKIKHMEIDIIKRETTG-TGPNV-YHEN-------DTIA--KYEI-MDGAP  242 (340)
T ss_dssp             EEEEEEESCSEEETTCEEEEEEEEEEE-CSCEEEEEEEEEEEEEEE-ETTEE-EEEE-------EEEE--EEEE-EESCC
T ss_pred             EEEEEEECcccccCCCeEEEEEEEEEe-eceeEEEEEEEEEEEEEe-cCCCe-eEEE-------EEEE--EEEE-ecCCc
Confidence            444454455679999999999998744 366667777765432221 11110 0000       1111  1122 24544


Q ss_pred             CCCceEeeeEEEcCCCCCcccccccceEE--eeeeEEEEEEEEEEEecccCCCceEEEEEEEEe
Q 023426          118 GSGTTEVPFSMNLKQHGEENLERFYETFH--GADINIQYLVTVDIMRGYLHKSLSATVEFIVET  179 (282)
Q Consensus       118 p~G~~~fPF~F~Lp~~~~~~~~~l~ESy~--G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~  179 (282)
                      -.|. .+||.+.||..      .+..||.  ....+|+|+|.+++.=.-. ..+.+..++++..
T Consensus       243 ~rge-~IPirl~Lp~~------~l~PT~~~~~~~fsV~Y~Lnlvl~~e~~-~~~~kq~pI~L~R  298 (340)
T 2r51_A          243 VRGE-SIPIRLFLAGY------ELTPTMRDINKKFSVRYYLNLVLIDEEE-RRYFKQQEVVLWR  298 (340)
T ss_dssp             CTTC-EEEEEEEGGGS------CCCCCEEEETTTEEEEEEEEEEEEETTC-CEEEEEEEEEEEC
T ss_pred             cCCC-EEEEEEECCCC------CCCCCccccCCeEEEEEEEEEEEEeCCC-cEEEEEeeEEEEE
Confidence            4554 58999999862      2455888  7789999999999987664 3688888888843

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=96.42  E-value=0.031  Score=52.45  Aligned_cols=120  Identities=16%  Similarity=0.176  Sum_probs=70.3

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCccc
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRI  117 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~L  117 (282)
                      +.|.|.=++..|.+||.|.|++.+.+. .++.+.|.+.+.-...+......  ..|+       .++.  ..++ -+|.-
T Consensus       176 L~ieF~~~ks~y~l~d~I~G~I~f~~s-~i~Ik~iel~LiR~Et~~~~~~~--~~e~-------~~i~--k~eI-mDG~p  242 (341)
T 2fau_A          176 LHIEFEYNKSKYHLKDVIVGKIYFLLV-RIKIQHMELQLIKKEITGIGPST--TTET-------ETIA--KYEI-MDGAP  242 (341)
T ss_dssp             EEEEEEESCSEEETTCEEEEEEEEEEE-CSCEEEEEEEEEEEEEESCGGGC--EEEE-------EEEE--EEEC-CCC--
T ss_pred             EEEEEEEccccccCCCeEEEEEEEEEe-ccceEEEEEEEEEEEEEcCCCCe--eeEE-------EEEE--EEEE-eCCCc
Confidence            344665566789999999999998754 46777788877654322111110  0110       1111  1233 24665


Q ss_pred             CCCceEeeeEEEcCCCCCcccccccceEE--eeeeEEEEEEEEEE-EecccCCCceEEEEEEEEe
Q 023426          118 GSGTTEVPFSMNLKQHGEENLERFYETFH--GADINIQYLVTVDI-MRGYLHKSLSATVEFIVET  179 (282)
Q Consensus       118 p~G~~~fPF~F~Lp~~~~~~~~~l~ESy~--G~~g~vrY~vkv~i-~Rp~~~~d~~~~~eF~V~~  179 (282)
                      -.|. .+||.+.||..      .+..||.  ....+|+|+|.+.+ +-.+.  ...+..|++...
T Consensus       243 ~rge-~IPirl~Lp~~------~l~PT~~~~~~~fsV~Y~Lnlvlvde~~r--ryfk~~EI~L~R  298 (341)
T 2fau_A          243 VKGE-SIPIRLFLAGY------DPTPTMRDVNKKFSVRYFLNLVLVDEEDR--RYFKQQEIILWR  298 (341)
T ss_dssp             -----CEEEEEESTTT------CCCCCEEEEETTEEEEEEEEEEEEETTCC--EEEEEEEEEEEC
T ss_pred             cCCC-EEEEEEEcCCC------CCCCcchhcCCeEEEEEEEEEEEEeCCCC--eeeeeeEEEEEE
Confidence            5665 58999999962      2455888  77899999999999 43321  144556666633

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=96.39  E-value=0.085  Score=50.36  Aligned_cols=124  Identities=16%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCccc
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRI  117 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~L  117 (282)
                      +++.+|+  ..|++||+|.=.|.|++......+.|++.+.-.+.+..           |++.+   +-.....+...+.+
T Consensus       196 l~vsLdK--~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l-----------~s~~~---~k~~Va~~e~~e~V  259 (392)
T 1suj_A          196 LEASLDK--EIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVL-----------FSLDK---YVKTVCAEETNDTV  259 (392)
T ss_dssp             EEEEESC--SEEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECS-----------SSCCE---EEEEEEEEECCCCB
T ss_pred             EEEEeCC--ccccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEE-----------ecCCc---EEEEEEEEecCCCc
Confidence            5666655  67999999999999999988899999999987765531           11111   11111123233356


Q ss_pred             CCCceEeeeEEEcCCCCCcccc---------------cccceEEeee--------eEEEEEEEEEEEecccC-------C
Q 023426          118 GSGTTEVPFSMNLKQHGEENLE---------------RFYETFHGAD--------INIQYLVTVDIMRGYLH-------K  167 (282)
Q Consensus       118 p~G~~~fPF~F~Lp~~~~~~~~---------------~l~ESy~G~~--------g~vrY~vkv~i~Rp~~~-------~  167 (282)
                      ++|.+ +-+.|.|.+.-+++.+               -|-.|=.+..        +.|.|.|+|.+.-++.+       .
T Consensus       260 ~pgst-~~k~~~L~P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~~~~gI~VsY~vkVkl~v~~gg~~~~~~s~  338 (392)
T 1suj_A          260 AANST-LSKTFSVTPMLANNREKRGLALDGKLKHEDTNLASTTVIRPGMDKEVLGILVSYKVKVHLVVARGGILGDLTSS  338 (392)
T ss_dssp             CTTEE-EEEEEEECCCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEEETTSSTTCCCCE
T ss_pred             CCCCE-EEEEEEEeccccCCCccceeeecccccCCCccccccccccCCCCccccceEEEEEEEEEEEEcCCccccccccc
Confidence            66654 7788887643221000               0112222111        69999999999998721       3


Q ss_pred             CceEEEEEEEE
Q 023426          168 SLSATVEFIVE  178 (282)
Q Consensus       168 d~~~~~eF~V~  178 (282)
                      ++..+.+|++-
T Consensus       339 d~~velPf~L~  349 (392)
T 1suj_A          339 DVAVELPLTLM  349 (392)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CeeEEECeEEe
Confidence            79999999983

>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A

Probab=90.00  E-value=9.4  Score=36.08  Aligned_cols=44  Identities=23%  Similarity=0.365  Sum_probs=38.8

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEE
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQ   83 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~   83 (282)
                      +++.+|+  ..|++||+|.=.|.|++......+.|++.+.-.+++.
T Consensus       215 L~vsLdK--~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~  258 (380)
T 3ugu_A          215 LAVSLSK--EIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVV  258 (380)
T ss_dssp             EEEEESC--SEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEEC
T ss_pred             EEEEeCC--ccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEE
Confidence            6667765  6799999999999999999999999999999888775

>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*

Probab=81.23  E-value=44  Score=32.86  Aligned_cols=84  Identities=13%  Similarity=0.150  Sum_probs=45.1

Q ss_pred             EeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCCCCceeEEEecccc
Q 023426          123 EVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT  202 (282)
Q Consensus       123 ~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~~~~pv~f~I~~dt  202 (282)
                      .|.++|+||+.++          .|     .|.|+|.... -  .+......|.|+....        | ..+..+.+..
T Consensus       166 ~~~~~f~Lp~~~~----------~G-----~w~I~v~~~~-~--~~~~~~~~F~VeeYvl--------P-~feV~i~~~~  218 (645)
T 2hr0_A          166 VLPLSWDIPELVN----------MG-----QWKIRAYYEN-S--PQQVFSTEFEVKEYVL--------P-SFEVIVEPTE  218 (645)
T ss_dssp             EEEEEEECCSSCC----------CS-----EEEEEEEETT-C--TTSEEEEEEECCCSCC--------C-CCEEEEEESS
T ss_pred             eEEEEEECCCccc----------cc-----cEEEEEEECC-C--CCceEEEEEEEeeccC--------C-eEEEEEEcCc
Confidence            3689999998622          34     5778776531 1  1345778899954322        1 2233333311


Q ss_pred             cCCCccCCccc-cceEEEEEEeccccCCCceEEEEEEE
Q 023426          203 QRHPLLPELKS-GGFKVTGKMSTQCSLLDPITGELTVE  239 (282)
Q Consensus       203 l~~~~i~~~~~-~~F~i~g~~k~~~~l~d~i~G~i~~~  239 (282)
                        ....  .+. ..+.  +.+...|..+.|+.|+..+.
T Consensus       219 --~~~~--~~~~~~~~--v~v~a~Y~~G~Pv~G~a~v~  250 (645)
T 2hr0_A          219 --KFYY--IYNEKGLE--VTITARFLYGKKVEGTAFVI  250 (645)
T ss_dssp             --SSEE--TTCTTCEE--EEEEEECTTSCBCCEEEEEE
T ss_pred             --eeEe--cCCCcEEE--EEEEEEEcCCCeeeeEEEEE
Confidence              0000  111 2233  33445688899999976553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	95.0
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	94.96
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	88.63
d1cf1a1	173	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	86.39
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	86.36

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=95.00  E-value=0.61  Score=38.38  Aligned_cols=47  Identities=19%  Similarity=0.321  Sum_probs=40.3

Q ss_pred             CeeEEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEE
Q 023426           34 DMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANL   82 (282)
Q Consensus        34 ~m~~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~   82 (282)
                      +...+.+.+|+  ..|.+||.|.=.|.|++......++|++.+.-.+..
T Consensus        20 g~~~l~~~l~~--~~y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~q~~~~   66 (218)
T d1g4ma2          20 KPLHLEASLDK--EIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADI   66 (218)
T ss_dssp             SCEEEEEEESC--SEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEE
T ss_pred             CcEEEEEEECC--CeEcCCCEEEEEEEEECCCCCEEeeEEEEEEEEEEE
Confidence            33448889987  569999999999999999999999999999877665

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=94.96  E-value=0.12  Score=42.96  Aligned_cols=44  Identities=23%  Similarity=0.365  Sum_probs=39.4

Q ss_pred             EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEE
Q 023426           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQ   83 (282)
Q Consensus        38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~   83 (282)
                      +++.+|+  ..|++||.|.=.|.|++......+.|++.+.-.+++.
T Consensus        23 l~~~ldr--~~Y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~Q~~~~~   66 (211)
T d1cf1a2          23 LAVSLSK--EIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVV   66 (211)
T ss_dssp             EEEEESC--SEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEEC
T ss_pred             EEEEECC--ceEcCCCEEEEEEEEEcCCCcceeeEEEEEEEEEEEE
Confidence            8888877  6799999999999999998899999999999887764

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=88.63  E-value=1.6  Score=35.60  Aligned_cols=64  Identities=11%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             cccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEEe
Q 023426          212 KSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQM  276 (282)
Q Consensus       212 ~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iqI  276 (282)
                      ..+..+++..+ ++.|..+|.|.-.+.++ .|+..|+.|.+.|+|.-++.+- +..+....+...+-
T Consensus        18 ~sg~~~l~~~l~~~~y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~q~~~~~~~-~~~~~~~~v~~~~~   83 (218)
T d1g4ma2          18 SDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLF-NTAQYKCPVAMEEA   83 (218)
T ss_dssp             SSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSS-BCEEEEEEEEEEEE
T ss_pred             eCCcEEEEEEECCCeEcCCCEEEEEEEEECCCCCEEeeEEEEEEEEEEEEEe-cCCcEEEEEEEEee
Confidence            44567899999 78899999999888888 7889999999999999997543 33333344444333

>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=86.39  E-value=4  Score=32.43  Aligned_cols=42  Identities=10%  Similarity=0.108  Sum_probs=31.1

Q ss_pred             CceEeeeEEEcCCCCCcccc-cccceEEeeeeEEEEEEEEEEE
Q 023426          120 GTTEVPFSMNLKQHGEENLE-RFYETFHGADINIQYLVTVDIM  161 (282)
Q Consensus       120 G~~~fPF~F~Lp~~~~~~~~-~l~ESy~G~~g~vrY~vkv~i~  161 (282)
                      |.+-|||.|.+|++.|+-+- .+=..+.|+---|.|.||+-+.
T Consensus       103 G~nA~PF~f~~p~~~P~SVtLQP~p~d~GkpcGVdyevK~f~a  145 (173)
T d1cf1a1         103 GANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFAT  145 (173)
T ss_dssp             CSSEEEEEECCCSSCCCCEEECCCTTCCSCCEEEEEEEEEEEE
T ss_pred             CCCCcceEEeCCCCCCceEEeccCCccCCCcceeeEEEEEEEe
Confidence            45679999999998664221 1124688999999999999874

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=86.36  E-value=2  Score=35.12  Aligned_cols=49  Identities=10%  Similarity=0.228  Sum_probs=41.8

Q ss_pred             cccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEEEEEEEEe
Q 023426          212 KSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILL  260 (282)
Q Consensus       212 ~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLiR~Et~g~  260 (282)
                      ..+..+++..+ ++.|..+|.|.-.+.++ .|+..|+.|++.|++.-++-.
T Consensus        17 ~sg~l~l~~~ldr~~Y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~Q~~~~~~   67 (211)
T d1cf1a2          17 SDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVL   67 (211)
T ss_dssp             TTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECS
T ss_pred             cCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCcceeeEEEEEEEEEEEEE
Confidence            33566899999 78899999999888888 889999999999999988743