Citrus Sinensis ID: 023449

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MAASAKFSLTPSFKIPESYPPKTLVSNFLTIPSKSYLKFNPYFKPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDSFKASL
cccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcEEEEEEEEcccccEEEEEEEcccccccccccEEEEccEEEEEEEEccccccEEEEEcHHHHHcccccccccccccccccccccccccccEEEccccccEEEEEEEEEcccEEEEEEEEcccccccccccccEEEccEEEEEEEEEccccEEEEEEEcccccHHcccccccccccEEEHHHHHHHHHHHHcccccccccccc
ccEEEEEEccccccccccccccccEEEccccccccccccccccccccccccccccccccHHccccccccccHcEcccccEEEEEEEEEEEcccEEEEEEEcHHHccccccccEEEEccEEEEEEEEcccccEEEEEEcHHHHHHccHHHcccccEEEEEEccccccccccccEcccccEEEEEEEEEEEccEEEEEEEccHHHHHHcccccEEEEccEEEEEEEEcccEEEEEEcEEcccHHHcEcccccccccEcHHHHHHHHHHHHHHcccccccccccc
maasakfsltpsfkipesyppktlvsnfltipsksylkfnpyfkpsslshlttipkpkfksgtqFHNRMIRCLFTGIVEEMGEieqlgasndggfVMKIRAKTVLEgvhlgdsiavngtCLTVTefgtqledftvglspetlrktslielepgslvnleravqptsrmgghfvqghvdgtgvivsmepeedslwikvktdksllkyivpkgfiaidgtsltvvdvfdeeeCFNFMLVAYTQQKvviplkkvgqkvNLEVDILGKYVERLLSSGFVDSFKASL
maasakfsltpsfkipesyppkTLVSNFLTIPSKSYLKFNPYFKPsslshlttipkpkfksgtqfhNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTslielepgslvNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVpkgfiaidgtSLTVVDVFDEEECFNFMLVAYTQQKvviplkkvgqkvNLEVDILGKYVErllssgfvdsfkasl
MAASAKFSLTPSFKIPESYPPKTLVSNFLTIPSKSYLKFNPYFKPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDSFKASL
*********************KTLVSNFLTIPSKSYLKFNPYFKPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFV*******
*****************************TIP***********************************RMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVER**************
********LTPSFKIPESYPPKTLVSNFLTIPSKSYLKFNPYFKPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDSFKASL
*AASAKFSLTPSFKIPESYPPKTLVSNFLTIPSKSYLKFNPYFKPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSS**********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAASAKFSLTPSFKIPESYPPKTLVSNFLTIPSKSYLKFNPYFKPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDSFKASL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q9Y7P0208 Riboflavin synthase OS=Sc yes no 0.726 0.985 0.480 1e-48
A5DB51239 Riboflavin synthase OS=Me N/A no 0.695 0.820 0.517 1e-47
P50854215 Riboflavin synthase OS=Ac yes no 0.723 0.948 0.478 4e-46
P38145238 Riboflavin synthase OS=Sa yes no 0.695 0.823 0.463 4e-42
P16440215 Riboflavin synthase OS=Ba yes no 0.684 0.897 0.454 2e-41
P65327201 Riboflavin synthase OS=My yes no 0.695 0.975 0.458 6e-37
P65328201 Riboflavin synthase OS=My yes no 0.695 0.975 0.458 6e-37
Q44680215 Riboflavin synthase OS=Ba yes no 0.684 0.897 0.434 3e-35
O67604207 Riboflavin synthase OS=Aq yes no 0.673 0.917 0.432 2e-32
P51961218 Riboflavin synthase OS=Ph N/A no 0.684 0.885 0.391 3e-30
>sp|Q9Y7P0|RISA_SCHPO Riboflavin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rib5 PE=1 SV=1 Back     alignment and function desciption
 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 143/210 (68%), Gaps = 5/210 (2%)

Query: 73  LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
           +FTG+VE +G ++ +  + D GF MKI A  +L+  H GDSIAVNGTCLTVT+F      
Sbjct: 1   MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDF--DRYH 58

Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
           FTVG++PE+LR T+L + + G  VNLERAV  ++RMGGHFVQGHVD    IV  + + ++
Sbjct: 59  FTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEA 118

Query: 193 LWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKV 251
           +    +  D  +LKYIV KG+IA+DGTSLT+  V  ++  F+ M+++YTQ KV++  K V
Sbjct: 119 IDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV--DDSTFSIMMISYTQSKVIMAKKNV 176

Query: 252 GQKVNLEVDILGKYVERLLSSGFVDSFKAS 281
           G  VN+EVD +GKY E+L+ +   D  K +
Sbjct: 177 GDLVNVEVDQIGKYTEKLVEAHIADWIKKT 206

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 9
>sp|A5DB51|RISA_PICGU Riboflavin synthase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RIB5 PE=2 SV=3 Back     alignment and function description
>sp|P50854|RISA_ACTPL Riboflavin synthase OS=Actinobacillus pleuropneumoniae GN=ribE PE=3 SV=1 Back     alignment and function description
>sp|P38145|RISA_YEAST Riboflavin synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIB5 PE=1 SV=1 Back     alignment and function description
>sp|P16440|RISA_BACSU Riboflavin synthase OS=Bacillus subtilis (strain 168) GN=ribE PE=1 SV=2 Back     alignment and function description
>sp|P65327|RISA_MYCTU Riboflavin synthase OS=Mycobacterium tuberculosis GN=ribE PE=3 SV=1 Back     alignment and function description
>sp|P65328|RISA_MYCBO Riboflavin synthase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ribE PE=3 SV=1 Back     alignment and function description
>sp|Q44680|RISA_BACAM Riboflavin synthase OS=Bacillus amyloliquefaciens GN=ribE PE=3 SV=1 Back     alignment and function description
>sp|O67604|RISA_AQUAE Riboflavin synthase OS=Aquifex aeolicus (strain VF5) GN=ribE PE=3 SV=1 Back     alignment and function description
>sp|P51961|RISA_PHOPO Riboflavin synthase OS=Photobacterium phosphoreum GN=ribE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
225446349280 PREDICTED: riboflavin synthase alpha cha 0.975 0.982 0.716 1e-106
255553759286 Riboflavin synthase alpha chain, putativ 0.978 0.965 0.676 1e-98
356542936275 PREDICTED: riboflavin synthase alpha cha 0.851 0.872 0.744 3e-96
118484875274 unknown [Populus trichocarpa] 0.943 0.970 0.698 3e-96
224127194205 predicted protein [Populus trichocarpa] 0.726 1.0 0.855 6e-96
224121904231 predicted protein [Populus trichocarpa] 0.819 1.0 0.765 6e-94
429537129282 riboflavin synthase [Momordica charantia 0.943 0.943 0.664 5e-92
18399445271 riboflavin synthase alpha chain [Arabido 0.921 0.959 0.645 7e-90
449444364278 PREDICTED: riboflavin synthase-like [Cuc 0.911 0.924 0.657 9e-90
449475964278 PREDICTED: riboflavin synthase-like [Cuc 0.911 0.924 0.657 1e-89
>gi|225446349|ref|XP_002274029.1| PREDICTED: riboflavin synthase alpha chain [Vitis vinifera] Back     alignment and taxonomy information
 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/282 (71%), Positives = 227/282 (80%), Gaps = 7/282 (2%)

Query: 4   SAKFSLTPSFKIPESYPPKTLVSNFLTIPSKSYLKFNPYFKPSSLSHLTTI--PKPK--F 59
           S    LT   +  +  PPKT + NF  +P ++ LK N   KPSSL+   T   PKP+  F
Sbjct: 2   SVSLYLTSLSRTIKPAPPKTPICNFHALPCRTSLKSNTILKPSSLTLFFTTHSPKPRHLF 61

Query: 60  KSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGT 119
           +     HN  IR LFTGIVEEMGE++QLG ++ GGF MKI A TVLE V+LGDSI++NGT
Sbjct: 62  RPN---HNNPIRSLFTGIVEEMGEVKQLGVADHGGFDMKIHATTVLEDVNLGDSISINGT 118

Query: 120 CLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDG 179
           CLTVT+F T+L +FTVGLSPETLRKTSL ELEPGSLVNLERAV+P SRMGGHFVQGHVDG
Sbjct: 119 CLTVTQFDTKLSEFTVGLSPETLRKTSLSELEPGSLVNLERAVRPVSRMGGHFVQGHVDG 178

Query: 180 TGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAY 239
           TG IVS EPE DSLW+KVKT   LL++IVPKGFIA+DGTSLTVVDVFD+E CFNFMLVAY
Sbjct: 179 TGEIVSTEPEGDSLWVKVKTTPELLRFIVPKGFIAVDGTSLTVVDVFDDEGCFNFMLVAY 238

Query: 240 TQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDSFKAS 281
           TQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDS KAS
Sbjct: 239 TQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDSIKAS 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255553759|ref|XP_002517920.1| Riboflavin synthase alpha chain, putative [Ricinus communis] gi|223542902|gb|EEF44438.1| Riboflavin synthase alpha chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356542936|ref|XP_003539920.1| PREDICTED: riboflavin synthase alpha chain-like [Glycine max] Back     alignment and taxonomy information
>gi|118484875|gb|ABK94304.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127194|ref|XP_002329423.1| predicted protein [Populus trichocarpa] gi|222870473|gb|EEF07604.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224121904|ref|XP_002330682.1| predicted protein [Populus trichocarpa] gi|222872286|gb|EEF09417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|429537129|gb|AFZ99647.1| riboflavin synthase [Momordica charantia] Back     alignment and taxonomy information
>gi|18399445|ref|NP_565482.1| riboflavin synthase alpha chain [Arabidopsis thaliana] gi|13605593|gb|AAK32790.1|AF361622_1 At2g20690/F5H14.34 [Arabidopsis thaliana] gi|19548077|gb|AAL87403.1| At2g20690/F5H14.34 [Arabidopsis thaliana] gi|20197688|gb|AAD20926.2| putative riboflavin synthase alpha chain [Arabidopsis thaliana] gi|330251963|gb|AEC07057.1| riboflavin synthase alpha chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449444364|ref|XP_004139945.1| PREDICTED: riboflavin synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449475964|ref|XP_004154601.1| PREDICTED: riboflavin synthase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:2051394271 AT2G20690 [Arabidopsis thalian 0.882 0.918 0.685 1.9e-83
POMBASE|SPCC1450.13c208 SPCC1450.13c "riboflavin synth 0.719 0.975 0.485 4.2e-47
ASPGD|ASPL0000012340234 AN4231 [Emericella nidulans (t 0.709 0.854 0.490 7.1e-45
TIGR_CMR|CHY_1474213 CHY_1474 "riboflavin synthase, 0.670 0.887 0.479 2.4e-44
UNIPROTKB|G4MSU9214 MGG_04586 "Riboflavin synthase 0.730 0.962 0.483 8.1e-44
CGD|CAL0004725279 RIB5 [Candida albicans (taxid: 0.695 0.702 0.467 1.1e-41
TIGR_CMR|BA_4332214 BA_4332 "riboflavin synthase, 0.687 0.906 0.457 3.6e-41
SGD|S000000460238 RIB5 "Riboflavin synthase" [Sa 0.687 0.815 0.468 3.6e-41
TIGR_CMR|DET_1189205 DET_1189 "riboflavin synthase, 0.666 0.917 0.467 2.6e-38
UNIPROTKB|P65327201 ribE "Riboflavin synthase" [My 0.695 0.975 0.458 4.4e-36
TAIR|locus:2051394 AT2G20690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 174/254 (68%), Positives = 200/254 (78%)

Query:    21 PKT-LVSNFLTIPSKSYLKFNPYFKPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVE 79
             PK  L  +F T  S + L+F+   K S LS  T+  + +     Q  N  IR +FTGIVE
Sbjct:    13 PKVCLPQSFRTGESVTNLRFDCVSKSSKLSLKTSCGRSRTHHRRQ--NLSIRSVFTGIVE 70

Query:    80 EMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSP 139
             EMGE++ LG ++ GGF +KI A+ VLE V LGDSIAVNGTCLTVTEF    E+FTVGL+P
Sbjct:    71 EMGEVKDLGMADHGGFDLKIGARVVLEDVKLGDSIAVNGTCLTVTEFNA--EEFTVGLAP 128

Query:   140 ETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKT 199
             ETLRKTSL EL+ GS VNLERA+QP SRMGGH VQGHVDGTGVI SME E DSLW+KVK 
Sbjct:   129 ETLRKTSLEELKKGSPVNLERALQPVSRMGGHVVQGHVDGTGVIESMEVEGDSLWVKVKA 188

Query:   200 DKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEV 259
             DK LLKYIVPKGF+A+DGTSLTVVDVFDEE CFNFM++AYTQQ VVIP KK+GQKVNLEV
Sbjct:   189 DKGLLKYIVPKGFVAVDGTSLTVVDVFDEESCFNFMMIAYTQQNVVIPTKKIGQKVNLEV 248

Query:   260 DILGKYVERLLSSG 273
             DI+GKYVERLL+SG
Sbjct:   249 DIMGKYVERLLTSG 262
GO:0004746 "riboflavin synthase activity" evidence=IEA;IDA
GO:0009231 "riboflavin biosynthetic process" evidence=IEA;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
POMBASE|SPCC1450.13c SPCC1450.13c "riboflavin synthase" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000012340 AN4231 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1474 CHY_1474 "riboflavin synthase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|G4MSU9 MGG_04586 "Riboflavin synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
CGD|CAL0004725 RIB5 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4332 BA_4332 "riboflavin synthase, alpha subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
SGD|S000000460 RIB5 "Riboflavin synthase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1189 DET_1189 "riboflavin synthase, alpha subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P65327 ribE "Riboflavin synthase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.90.824
3rd Layer2.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018574001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (280 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034771001
RecName- Full=6,7-dimethyl-8-ribityllumazine synthase; EC=2.5.1.9; (185 aa)
• ••••• 0.998
GSVIVG00012169001
SubName- Full=Chromosome undetermined scaffold_354, whole genome shotgun sequence; (461 aa)
••• ••• 0.954
GSVIVG00024399001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (450 aa)
••• ••• 0.947
GSVIVG00026840001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (230 aa)
• ••• • 0.934
GSVIVG00012642001
SubName- Full=Chromosome undetermined scaffold_3129, whole genome shotgun sequence; (208 aa)
     •• 0.932
GSVIVG00031262001
SubName- Full=Chromosome undetermined scaffold_55, whole genome shotgun sequence; (648 aa)
•••  •• 0.896
GSVIVG00025064001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (586 aa)
• •   • 0.868
GSVIVG00012102001
SubName- Full=Chromosome undetermined scaffold_2961, whole genome shotgun sequence; (145 aa)
• • • • 0.755
GSVIVG00036866001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (471 aa)
•  •    0.686
GSVIVG00006883001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa)
•     • 0.658

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
PLN02741194 PLN02741, PLN02741, riboflavin synthase 1e-127
PRK09289194 PRK09289, PRK09289, riboflavin synthase subunit al 9e-94
COG0307204 COG0307, RibC, Riboflavin synthase alpha chain [Co 8e-86
TIGR00187200 TIGR00187, ribE, riboflavin synthase, alpha subuni 2e-67
PRK13020206 PRK13020, PRK13020, riboflavin synthase subunit al 4e-51
pfam0067786 pfam00677, Lum_binding, Lumazine binding domain 5e-21
pfam0067786 pfam00677, Lum_binding, Lumazine binding domain 2e-16
>gnl|CDD|178342 PLN02741, PLN02741, riboflavin synthase Back     alignment and domain information 
 Score =  359 bits (923), Expect = e-127
 Identities = 158/196 (80%), Positives = 172/196 (87%), Gaps = 2/196 (1%)

Query: 73  LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
           LFTGIVEEMGE++ LG ++DGGF +KI A TVL+GV LGDSIAVNGTCLTVTEF    ++
Sbjct: 1   LFTGIVEEMGEVKSLGVTDDGGFDLKIEASTVLDGVKLGDSIAVNGTCLTVTEFDG--DE 58

Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
           FTVGL+PETLRKTSL EL+ GSLVNLERA++P SRMGGHFVQGHVDGTG IV  EPE DS
Sbjct: 59  FTVGLAPETLRKTSLGELKTGSLVNLERALRPGSRMGGHFVQGHVDGTGTIVEQEPEGDS 118

Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
           LW+KVK D  LLKYIVPKGFIA+DGTSLTVVDV DEE CFNFMLV YTQQKVVIPLKKVG
Sbjct: 119 LWVKVKADPELLKYIVPKGFIAVDGTSLTVVDVDDEEGCFNFMLVPYTQQKVVIPLKKVG 178

Query: 253 QKVNLEVDILGKYVER 268
            KVNLEVDILGKYVER
Sbjct: 179 DKVNLEVDILGKYVER 194

Length = 194
>gnl|CDD|236455 PRK09289, PRK09289, riboflavin synthase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|223384 COG0307, RibC, Riboflavin synthase alpha chain [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|232864 TIGR00187, ribE, riboflavin synthase, alpha subunit Back     alignment and domain information
>gnl|CDD|183846 PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|201387 pfam00677, Lum_binding, Lumazine binding domain Back     alignment and domain information
>gnl|CDD|201387 pfam00677, Lum_binding, Lumazine binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
TIGR00187200 ribE riboflavin synthase, alpha subunit. The name 100.0
PLN02741194 riboflavin synthase 100.0
COG0307204 RibC Riboflavin synthase alpha chain [Coenzyme met 100.0
PRK13020206 riboflavin synthase subunit alpha; Provisional 100.0
PRK09289194 riboflavin synthase subunit alpha; Provisional 100.0
KOG3310210 consensus Riboflavin synthase alpha chain [Coenzym 100.0
PRK09289194 riboflavin synthase subunit alpha; Provisional 99.97
PRK13020206 riboflavin synthase subunit alpha; Provisional 99.97
PLN02741194 riboflavin synthase 99.96
TIGR00187200 ribE riboflavin synthase, alpha subunit. The name 99.96
COG0307204 RibC Riboflavin synthase alpha chain [Coenzyme met 99.95
PF0067785 Lum_binding: Lumazine binding domain; InterPro: IP 99.95
PF0067785 Lum_binding: Lumazine binding domain; InterPro: IP 99.95
KOG3310210 consensus Riboflavin synthase alpha chain [Coenzym 99.75
PF0097099 FAD_binding_6: Oxidoreductase FAD-binding domain; 86.46
>TIGR00187 ribE riboflavin synthase, alpha subunit Back     alignment and domain information 
Probab=100.00  E-value=8.4e-77  Score=529.59  Aligned_cols=195  Identities=43%  Similarity=0.688  Sum_probs=188.2

Q ss_pred             eeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC
Q 023449           73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE  151 (282)
Q Consensus        73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk  151 (282)
                      |||||||++|+|.++++.++ .++++|+++ .+++++++|||||||||||||+++.+  ++|+|++|||||++|||+.|+
T Consensus         1 MFTGiVe~~G~V~~i~~~~~-~~~l~i~~~~~~~~~l~~G~SIAvnGvCLTV~~i~~--~~f~vdvipETl~~TtL~~l~   77 (200)
T TIGR00187         1 MFTGIIQGTAKLVSIKEKPL-FISLVVNLADHMLDDLELGDSIAVNGVCLTVTEINK--NHFSVDLSPETLKRTNLGDLK   77 (200)
T ss_pred             CCCEEeeEEEEEEEEEECCC-cEEEEEEeChHHhcccccCCEEEECcEEEEEEEEcC--CEEEEEEEHHHhhhcchhhCc
Confidence            99999999999999999875 788999987 57789999999999999999999998  899999999999999999999


Q ss_pred             CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEe-CcccccceeeeecEEEcceeeeeeeeeCCCc
Q 023449          152 PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKT-DKSLLKYIVPKGFIAIDGTSLTVVDVFDEEE  230 (282)
Q Consensus       152 vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~-p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~  230 (282)
                      +||+|||||||++|||+|||+|||||||+|+|.++++.+++++++|++ |+++++|+++|||||||||||||+++.  ++
T Consensus        78 ~G~~VNLEral~~g~rlgGH~V~GHVd~~~~i~~~~~~~~~~~~~~~~~p~~~~~yiv~KGsIaidGvSLTV~~v~--~~  155 (200)
T TIGR00187        78 VGTWVNIERALKADGEIGGHFVSGHIDTTAEIAKIETSENNVQFWFKLQDSELMKYIVEKGSIAVDGISLTIGKVT--ET  155 (200)
T ss_pred             CCCEEEEcccCCCCCccCCeeEeEEccEEEEEEEEEEcCCcEEEEEEECCHHHHhccccCCEEEEeeeEEEEEeEc--CC
Confidence            999999999999999999999999999999999999999999999999 899999999999999999999999997  57


Q ss_pred             EEEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHHHHcc
Q 023449          231 CFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSS  272 (282)
Q Consensus       231 ~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~~l~~  272 (282)
                      +|+|+|||||+++|||+.+|+||+||||+|+|+|||+|+++.
T Consensus       156 ~f~v~lIP~T~~~T~l~~~~~Gd~VNiE~D~~~kyv~~~~~~  197 (200)
T TIGR00187       156 RFCVSLIPHTLENTILGLKKLGDRVNIEIDMLGKAVADTLER  197 (200)
T ss_pred             EEEEEEehHhHhhCccccCCCCCEEEEeEhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999853

The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
>PLN02741 riboflavin synthase Back     alignment and domain information
>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism] Back     alignment and domain information
>PRK13020 riboflavin synthase subunit alpha; Provisional Back     alignment and domain information
>PRK09289 riboflavin synthase subunit alpha; Provisional Back     alignment and domain information
>KOG3310 consensus Riboflavin synthase alpha chain [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK09289 riboflavin synthase subunit alpha; Provisional Back     alignment and domain information
>PRK13020 riboflavin synthase subunit alpha; Provisional Back     alignment and domain information
>PLN02741 riboflavin synthase Back     alignment and domain information
>TIGR00187 ribE riboflavin synthase, alpha subunit Back     alignment and domain information
>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism] Back     alignment and domain information
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2 Back     alignment and domain information
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2 Back     alignment and domain information
>KOG3310 consensus Riboflavin synthase alpha chain [Coenzyme transport and metabolism] Back     alignment and domain information
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1kzl_A208 Riboflavin Synthase From S.Pombe Bound To Carboxyet 1e-49
1i8d_A213 Crystal Structure Of Riboflavin Synthase Length = 2 1e-24
3a35_A190 Crystal Structure Of Lump Complexed With Riboflavin 3e-10
1hze_A97 Solution Structure Of The N-Terminal Domain Of Ribo 3e-08
3ddy_A186 Structure Of Lumazine Protein, An Optical Transpond 3e-04
>pdb|1KZL|A Chain A, Riboflavin Synthase From S.Pombe Bound To Carboxyethyllumazine Length = 208 Back     alignment and structure 
Iteration: 1

 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 143/210 (68%), Gaps = 5/210 (2%)
Query: 73  LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
           +FTG+VE +G ++ +  + D GF MKI A  +L+  H GDSIAVNGTCLTVT+F      
Sbjct: 1   MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDF--DRYH 58
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
           FTVG++PE+LR T+L + + G  VNLERAV  ++RMGGHFVQGHVD    IV  + + ++
Sbjct: 59  FTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEA 118
Query: 193 LWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKV 251
           +    +  D  +LKYIV KG+IA+DGTSLT+  V  ++  F+ M+++YTQ KV++  K V
Sbjct: 119 IDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV--DDSTFSIMMISYTQSKVIMAKKNV 176
Query: 252 GQKVNLEVDILGKYVERLLSSGFVDSFKAS 281
           G  VN+EVD +GKY E+L+ +   D  K +
Sbjct: 177 GDLVNVEVDQIGKYTEKLVEAHIADWIKKT 206
>pdb|1I8D|A Chain A, Crystal Structure Of Riboflavin Synthase Length = 213 Back     alignment and structure
>pdb|3A35|A Chain A, Crystal Structure Of Lump Complexed With Riboflavin Length = 190 Back     alignment and structure
>pdb|1HZE|A Chain A, Solution Structure Of The N-Terminal Domain Of Riboflavin Synthase From E. Coli Length = 97 Back     alignment and structure
>pdb|3DDY|A Chain A, Structure Of Lumazine Protein, An Optical Transponder Of Luminescent Bacteria Length = 186 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1kzl_A208 Riboflavin synthase; biosynthesis of riboflavin, l 1e-102
1i8d_A213 Riboflavin synthase; riboflavin biosynthesis, anti 3e-91
3a35_A190 Lumazine protein, LUMP; luminous bacteria, homolog 5e-84
3ddy_A186 Lumazine protein, LUMP; luminescent bacteria, luma 7e-79
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3 Length = 208 Back     alignment and structure
 Score =  296 bits (761), Expect = e-102
 Identities = 101/209 (48%), Positives = 142/209 (67%), Gaps = 5/209 (2%)

Query: 74  FTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDF 133
           FTG+VE +G ++ +  + D GF MKI A  +L+  H GDSIAVNGTCLTVT+F      F
Sbjct: 2   FTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYH--F 59

Query: 134 TVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSL 193
           TVG++PE+LR T+L + + G  VNLERAV  ++RMGGHFVQGHVD    IV  + + +++
Sbjct: 60  TVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAI 119

Query: 194 WIKVKT-DKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
               +  D  +LKYIV KG+IA+DGTSLT+  V  ++  F+ M+++YTQ KV++  K VG
Sbjct: 120 DFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV--DDSTFSIMMISYTQSKVIMAKKNVG 177

Query: 253 QKVNLEVDILGKYVERLLSSGFVDSFKAS 281
             VN+EVD +GKY E+L+ +   D  K +
Sbjct: 178 DLVNVEVDQIGKYTEKLVEAHIADWIKKT 206
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A* Length = 213 Back     alignment and structure
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* Length = 190 Back     alignment and structure
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} Length = 186 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
1kzl_A208 Riboflavin synthase; biosynthesis of riboflavin, l 100.0
1i8d_A213 Riboflavin synthase; riboflavin biosynthesis, anti 100.0
3a35_A190 Lumazine protein, LUMP; luminous bacteria, homolog 100.0
3ddy_A186 Lumazine protein, LUMP; luminescent bacteria, luma 100.0
3a35_A190 Lumazine protein, LUMP; luminous bacteria, homolog 99.97
3ddy_A186 Lumazine protein, LUMP; luminescent bacteria, luma 99.97
1i8d_A213 Riboflavin synthase; riboflavin biosynthesis, anti 99.96
1kzl_A208 Riboflavin synthase; biosynthesis of riboflavin, l 99.96
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3 Back     alignment and structure
Probab=100.00  E-value=2e-77  Score=535.06  Aligned_cols=196  Identities=51%  Similarity=0.836  Sum_probs=187.4

Q ss_pred             eeeeeeccEEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCC
Q 023449           73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP  152 (282)
Q Consensus        73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkv  152 (282)
                      |||||||++|+|.++++.++.+++++|+++.+++++++|||||||||||||+++.+  ++|+|++|||||++|||+.|++
T Consensus         1 MFTGiVe~vG~V~~i~~~~~~~~~l~i~~~~~~~~l~~g~SIAvnGvcLTV~~~~~--~~F~vdvipETl~~T~Lg~l~~   78 (208)
T 1kzl_A            1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDR--YHFTVGIAPESLRLTNLGQCKA   78 (208)
T ss_dssp             CBCSCCCEEEEEEEEEEETTTEEEEEEECGGGCTTCCTTCEEEETTEEEEEEEECS--SEEEEEECHHHHHHSSGGGCCT
T ss_pred             CCCEEeceEEEEEEEEECCCceEEEEEechHHhcccCCCCEEEECCEEeeEEEEcC--CEEEEEEeHHHHhhccccccCC
Confidence            99999999999999998763267888986567799999999999999999999998  8999999999999999999999


Q ss_pred             CCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEe-CcccccceeeeecEEEcceeeeeeeeeCCCcE
Q 023449          153 GSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKT-DKSLLKYIVPKGFIAIDGTSLTVVDVFDEEEC  231 (282)
Q Consensus       153 Gd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~-p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~  231 (282)
                      ||+|||||||++|||+|||+|||||||+|+|.++++++++++++|++ |+++++|+++|||||||||||||+++.  +++
T Consensus        79 Gd~VNLEral~~g~rlgGH~VsGHVDg~g~i~~~~~~~~~~~~~~~~~p~~l~~yiv~KGsIaidGiSLTV~~v~--~~~  156 (208)
T 1kzl_A           79 GDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD--DST  156 (208)
T ss_dssp             TCEEEEEECCCCSCCSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEEC--SSC
T ss_pred             CCEEEeccCCCCCCcccceEeccEEeeeeEEEEEEecCCcEEEEEEeCCHHHHhhhhhCCEEEEeeEEeEEEeEc--CCE
Confidence            99999999999999999999999999999999999999999999999 999999999999999999999999998  468


Q ss_pred             EEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHHHHcc
Q 023449          232 FNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSS  272 (282)
Q Consensus       232 f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~~l~~  272 (282)
                      |+|+|||||+++|||+.+|+||+||||+|+++|||+|++..
T Consensus       157 F~v~lIP~T~~~T~l~~~~~Gd~VNlE~D~~~kyv~~~~~~  197 (208)
T 1kzl_A          157 FSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKLVEA  197 (208)
T ss_dssp             EEEEECHHHHTTSGGGGCCTTCEEEEEECTHHHHHHHHHHH
T ss_pred             EEEEEehhhHhhcccccCCCCCEEEEeEehHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999853
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A* Back     alignment and structure
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* Back     alignment and structure
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} Back     alignment and structure
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* Back     alignment and structure
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} Back     alignment and structure
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A* Back     alignment and structure
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1kzla2110 b.43.4.3 (A:93-202) Riboflavin synthase {Fission y 4e-33
d1kzla2110 b.43.4.3 (A:93-202) Riboflavin synthase {Fission y 2e-11
d1i8da2113 b.43.4.3 (A:94-206) Riboflavin synthase {Escherich 5e-27
d1i8da2113 b.43.4.3 (A:94-206) Riboflavin synthase {Escherich 6e-12
d1kzla192 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yea 2e-23
d1kzla192 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yea 4e-16
d1i8da193 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia 9e-20
d1i8da193 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia 9e-19
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 110 Back     information, alignment and structure

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  115 bits (288), Expect = 4e-33
 Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 3/111 (2%)

Query: 167 RMGGHFVQGHVDGTGVIVSMEPEEDS-LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDV 225
           RMGGHFVQGHVD    IV  + + ++  +     D  +LKYIV KG+IA+DGTSLT+  V
Sbjct: 1   RMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV 60

Query: 226 FDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVD 276
             ++  F+ M+++YTQ KV++  K VG  VN+EVD +GKY E+L+ +   D
Sbjct: 61  --DDSTFSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKLVEAHIAD 109
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 110 Back     information, alignment and structure
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 113 Back     information, alignment and structure
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 113 Back     information, alignment and structure
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 92 Back     information, alignment and structure
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 92 Back     information, alignment and structure
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 93 Back     information, alignment and structure
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 93 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1kzla2110 Riboflavin synthase {Fission yeast (Schizosaccharo 100.0
d1i8da2113 Riboflavin synthase {Escherichia coli [TaxId: 562] 100.0
d1i8da193 Riboflavin synthase {Escherichia coli [TaxId: 562] 100.0
d1kzla192 Riboflavin synthase {Fission yeast (Schizosaccharo 99.98
d1kzla2110 Riboflavin synthase {Fission yeast (Schizosaccharo 99.97
d1i8da2113 Riboflavin synthase {Escherichia coli [TaxId: 562] 99.97
d1i8da193 Riboflavin synthase {Escherichia coli [TaxId: 562] 99.95
d1kzla192 Riboflavin synthase {Fission yeast (Schizosaccharo 99.94
d1ep3b1101 Dihydroorotate dehydrogenase B, PyrK subunit {Lact 93.98
d1ep3b1101 Dihydroorotate dehydrogenase B, PyrK subunit {Lact 88.3
d1fdra199 Ferredoxin reductase (flavodoxin reductase) N-term 85.82
d2cnda1114 Nitrate reductase core domain {Corn (Zea mays) [Ta 81.9
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=7.4e-41  Score=270.55  Aligned_cols=107  Identities=47%  Similarity=0.784  Sum_probs=101.4

Q ss_pred             ccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeC-cccccceeeeecEEEcceeeeeeeeeCCCcEEEEEeehhhhhhhc
Q 023449          167 RMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTD-KSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVV  245 (282)
Q Consensus       167 rlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p-~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~f~V~LIP~Tl~~T~  245 (282)
                      |+|||+||||||++|+|.++++.++.+.+++.+| +.+.+|++.|||||+|||||||+++.  +++|+|++|||||++||
T Consensus         1 r~~GH~v~GHVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~--~~~f~v~lipETl~~Tn   78 (110)
T d1kzla2           1 RMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD--DSTFSIMMISYTQSKVI   78 (110)
T ss_dssp             CSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEEC--SSCEEEEECHHHHTTSG
T ss_pred             CcceeeeeEEecEEEEEEEEEECCCcceeeeecchhhhhhhhhhhheEEcCCcEEEEEeec--CCEEEEEEhHHHHhhcc
Confidence            8999999999999999999999999999999998 56789999999999999999999997  57899999999999999


Q ss_pred             CCCCcCCCEeEEehhhhHHHHHHHHccCCc
Q 023449          246 IPLKKVGQKVNLEVDILGKYVERLLSSGFV  275 (282)
Q Consensus       246 l~~~kvGd~VNiE~Dil~kyv~~~l~~~~~  275 (282)
                      |+.+++||+||||+|+|+||++|+++.+.+
T Consensus        79 l~~~~~G~~VNLE~D~lak~i~~~~~~~~~  108 (110)
T d1kzla2          79 MAKKNVGDLVNVEVDQIGKYTEKLVEAHIA  108 (110)
T ss_dssp             GGGCCTTCEEEEEECTHHHHHHHHHHHHTT
T ss_pred             cccCCCCCEEEEeehhHHHHHHHHHHhhcc
Confidence            999999999999999999999999975543
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Back     information, alignment and structure
>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Back     information, alignment and structure
>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} Back     information, alignment and structure