Citrus Sinensis ID: 023461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MATTLTWQPLQLQPKTTLHIGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETLCGNQKGTSFQEMVGARNLQSLMMTLLMLTLRRNEKILNIASDCQSDQTQRSK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mattltwqplqlqpkttlhiGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFrmdfsrnwPRYRKQLNDflntplgrsfATIFFLWFALSGWLFRILILATWvlpiaaplligtVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETlcgnqkgtsfqEMVGARNLQSLMMTLLMLTLRRNEKILNIASdcqsdqtqrsk
Flexible Loop (DISEMBL)
mattltwqplqlqpkttlhigrrraatvrafrrsdfdrfarrmtsgeawrdAWRTANNGFEQLVFDAKKtaeridrqysvsrrlnsaartaavrareldrefaisvrwrsfrmdfsrnwprYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETLcgnqkgtsfqeMVGARNLQSLMMTLLMLTLRRNEKILNiasdcqsdqtqrsk
Low Complexity Region (SEG)
MATTLTWQPLQLQPKTTLHIGrrraatvrafrrsdfdrfarrMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWvlvrlvrgsllvprARLFVVQAVETLCGNQKGTSFQEMVGARNLQSlmmtllmltlRRNEKILNIASDCQSDQTQRSK
Disordered region (IsUnstruct)
******WQPLQLQPKTTLHIGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVS**L**AARTAAVRARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETLCGNQKGTSFQEMVGARNLQSLMMTLLMLTLRRNEKILNIA************
Disordered Region (DISOPRED)
****LTW****************************FD*FAR**********AWRTANNGFEQLVFDAKKTAERID***S*****************ELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETLCGNQKGTSFQEMVGARNLQSLMMTLLMLTLRRNEKILNIA************
Disordered Region (DISEMBL)
MATTLTWQPLQLQPKTTLHIGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSR************ARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETLCGNQKGTSFQEMVGARNLQSLMMTLLMLTLRRNEKILNIASD**********
Disordered Region (DISPRO)
****LTWQPLQLQPKTT****************SDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETLCGNQKGTSFQEMVGARNLQSLMMTLLMLTLRRNEKILNIASDC*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTLTWQPLQLQPKTTLHIGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETLCGNQKGTSFQEMVGARNLQSLMMTLLMLTLRRNEKILNIASDCQSDQTQRSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
225454876	244	PREDICTED: uncharacterized protein LOC10	0.641	0.741	0.688	4e-66
297737376	214	unnamed protein product [Vitis vinifera]	0.546	0.719	0.772	1e-63
255557915	231	conserved hypothetical protein [Ricinus	0.617	0.753	0.670	5e-62
224078794	260	predicted protein [Populus trichocarpa]	0.613	0.665	0.602	2e-60
297837839	247	hypothetical protein ARALYDRAFT_315473 [	0.560	0.639	0.745	3e-60
18406650	248	uncharacterized protein [Arabidopsis tha	0.588	0.669	0.704	8e-55
449451842	247	PREDICTED: uncharacterized protein LOC10	0.482	0.550	0.698	4e-52
356531736	240	PREDICTED: uncharacterized protein LOC10	0.624	0.733	0.607	1e-51
351727667	226	uncharacterized protein LOC100306460 [Gl	0.595	0.743	0.605	5e-50
414867828	206	TPA: hypothetical protein ZEAMMB73_92900	0.602	0.825	0.542	3e-41

>gi|225454876|ref|XP_002278704.1| PREDICTED: uncharacterized protein LOC100247606 [Vitis vinifera]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 144/186 (77%), Gaps = 5/186 (2%)

Query: 1   MATTLTWQPLQLQPKTTLH-----IGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRT 55
           M T+L W PL      TL      +  R    VRAFRRSDFD FA+RM SG+AWRDAWR+
Sbjct: 1   MTTSLPWHPLFSSKPQTLRRFAAPVRHRLPMPVRAFRRSDFDGFAKRMASGDAWRDAWRS 60

Query: 56  ANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDF 115
           AN+GFE L+F+AKKTAERI+RQY+VSRR + A  +A   ARE+DREF I  RWR+  +DF
Sbjct: 61  ANDGFELLIFEAKKTAERINRQYAVSRRFSEAVGSAGDWAREVDREFEIGRRWRTVTLDF 120

Query: 116 SRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVA 175
            RNWPRYRKQLNDFL+TPLGRSFATIFFLWFALSGWLFR LI ATWVLP A PLLIGT A
Sbjct: 121 GRNWPRYRKQLNDFLDTPLGRSFATIFFLWFALSGWLFRFLIFATWVLPFAGPLLIGTFA 180

Query: 176 NNFVIK 181
           NNFVIK
Sbjct: 181 NNFVIK 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737376|emb|CBI26577.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 133/154 (86%)

Query: 28  VRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSA 87
           VRAFRRSDFD FA+RM SG+AWRDAWR+AN+GFE L+F+AKKTAERI+RQY+VSRR + A
Sbjct: 3   VRAFRRSDFDGFAKRMASGDAWRDAWRSANDGFELLIFEAKKTAERINRQYAVSRRFSEA 62

Query: 88  ARTAAVRARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFA 147
             +A   ARE+DREF I  RWR+  +DF RNWPRYRKQLNDFL+TPLGRSFATIFFLWFA
Sbjct: 63  VGSAGDWAREVDREFEIGRRWRTVTLDFGRNWPRYRKQLNDFLDTPLGRSFATIFFLWFA 122

Query: 148 LSGWLFRILILATWVLPIAAPLLIGTVANNFVIK 181
           LSGWLFR LI ATWVLP A PLLIGT ANNFVIK
Sbjct: 123 LSGWLFRFLIFATWVLPFAGPLLIGTFANNFVIK 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557915|ref|XP_002519986.1| conserved hypothetical protein [Ricinus communis] gi|223540750|gb|EEF42310.1| conserved hypothetical protein [Ricinus communis]

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/185 (67%), Positives = 143/185 (77%), Gaps = 11/185 (5%)

Query: 1   MATTLTWQ--PLQLQPKTTLHIGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRTANN 58
           MATTL W+  P     K       R   TVRAF+R DFDR AR         +AWR+AN+
Sbjct: 1   MATTLPWRQPPFPTLLKKRCPAAFRHVGTVRAFQRGDFDRLAR---------NAWRSAND 51

Query: 59  GFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSRN 118
           GFEQL+++A+K AERIDR+YSVSRR++  A++AA RARE+DRE  I VRWR+F +DFSRN
Sbjct: 52  GFEQLMYEARKAAERIDRRYSVSRRVSDVAQSAAERAREIDRELEIGVRWRTFTVDFSRN 111

Query: 119 WPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNF 178
           WPRYR+QLNDFL+TPLGR FATIFFLWFALSGWLFRILI ATWVLP AAPLLIGTVANN 
Sbjct: 112 WPRYRRQLNDFLDTPLGRGFATIFFLWFALSGWLFRILIFATWVLPFAAPLLIGTVANNL 171

Query: 179 VIKMA 183
           VIK A
Sbjct: 172 VIKGA 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078794|ref|XP_002305632.1| predicted protein [Populus trichocarpa] gi|222848596|gb|EEE86143.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 147/204 (72%), Gaps = 31/204 (15%)

Query: 1   MATTLTWQPL-------QLQPKTTLHIGRRRAATVR--------------AFRRSDFDRF 39
           MAT L+WQP           P + +  G   A   R              AFRR DFDRF
Sbjct: 1   MATALSWQPQLPTRIHKHSHPSSFIDAGTGYAFQCRIHRPISSIHSGKALAFRR-DFDRF 59

Query: 40  ARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELD 99
           A         +DAWRTAN+GFEQ +F+AKKTAERIDR+YSVSRRL++ A++A+ RARE+D
Sbjct: 60  A---------KDAWRTANDGFEQFLFEAKKTAERIDRRYSVSRRLSAVAQSASDRAREID 110

Query: 100 REFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILA 159
           RE+ IS+RWR+F MDF+RNWPRYRKQ+NDF NTP+GRSF TIFFLWFALSGW+FR+ I+A
Sbjct: 111 REYDISLRWRTFSMDFNRNWPRYRKQINDFFNTPIGRSFVTIFFLWFALSGWMFRLFIIA 170

Query: 160 TWVLPIAAPLLIGTVANNFVIKMA 183
           TWVLPIA PLLIGT+ANN VIK A
Sbjct: 171 TWVLPIAGPLLIGTLANNLVIKGA 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837839|ref|XP_002886801.1| hypothetical protein ARALYDRAFT_315473 [Arabidopsis lyrata subsp. lyrata] gi|297332642|gb|EFH63060.1| hypothetical protein ARALYDRAFT_315473 [Arabidopsis lyrata subsp. lyrata]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 120/161 (74%), Positives = 138/161 (85%), Gaps = 3/161 (1%)

Query: 24  RAAT---VRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSV 80
           RAA+   V+AF+R DFDRFA  + SG+AWRDAWR+AN+GFEQ VF+AKKTAERIDRQY+V
Sbjct: 23  RAASFLQVKAFQRGDFDRFADNVKSGKAWRDAWRSANDGFEQFVFEAKKTAERIDRQYAV 82

Query: 81  SRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFAT 140
           SRR +SAA +A  RARE+DREF IS R RSF  D SRN+P+YRKQ + FLNTPLG SFAT
Sbjct: 83  SRRFSSAASSAGDRAREIDREFGISPRVRSFSADLSRNFPKYRKQFSAFLNTPLGGSFAT 142

Query: 141 IFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIK 181
           IFFLWFALSGWLFR++I+ATWVLPIA PLLIG VANNFVIK
Sbjct: 143 IFFLWFALSGWLFRVIIIATWVLPIAGPLLIGAVANNFVIK 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406650|ref|NP_566028.1| uncharacterized protein [Arabidopsis thaliana] gi|13899075|gb|AAK48959.1|AF370532_1 Unknown protein [Arabidopsis thaliana] gi|18377520|gb|AAL66926.1| unknown protein [Arabidopsis thaliana] gi|20196922|gb|AAC31837.2| expressed protein [Arabidopsis thaliana] gi|330255384|gb|AEC10478.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 141/169 (83%), Gaps = 3/169 (1%)

Query: 16  TTLHIGRRRAAT---VRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFDAKKTAE 72
           TT +   R A++   V+AF+R DFDR A  + SG+AWRDAWR+AN+GFEQ VF+AKKTAE
Sbjct: 12  TTPYPHPRAASSFLQVKAFQRGDFDRLADNVKSGKAWRDAWRSANDGFEQFVFEAKKTAE 71

Query: 73  RIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNT 132
           RIDRQY+VSRR +SAA +AA RARE+DREF I+ R R+   DFSRN+P+YRKQ + FLNT
Sbjct: 72  RIDRQYAVSRRFSSAASSAADRAREIDREFGITPRVRTVSADFSRNFPKYRKQFSAFLNT 131

Query: 133 PLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVIK 181
           PLG SFATIFFLWFALSGWLFR++I+ATWVLPIA PLLIG VANNFVIK
Sbjct: 132 PLGGSFATIFFLWFALSGWLFRVIIIATWVLPIAGPLLIGAVANNFVIK 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451842|ref|XP_004143669.1| PREDICTED: uncharacterized protein LOC101219174 [Cucumis sativus]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 117/136 (86%)

Query: 46  GEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAIS 105
           G+AW   WR AN+GFE+ VF+A+KTAER+DR+YSVSRR+ SAA++ A RARE+DREFAI 
Sbjct: 53  GDAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVGSAAQSVADRAREIDREFAIG 112

Query: 106 VRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPI 165
           +RWR+F +DFSRNWPRYR+QLN+F++TPLG+S  TIFFLWFALSGWLFR LI  TW+LP 
Sbjct: 113 MRWRNFTLDFSRNWPRYRRQLNEFIDTPLGKSVVTIFFLWFALSGWLFRFLIFGTWILPF 172

Query: 166 AAPLLIGTVANNFVIK 181
           A P+LIGT AN+ VIK
Sbjct: 173 AGPILIGTFANSLVIK 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531736|ref|XP_003534432.1| PREDICTED: uncharacterized protein LOC100785744 [Glycine max]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/186 (60%), Positives = 140/186 (75%), Gaps = 10/186 (5%)

Query: 1   MATTLTWQPLQLQPKTT-----LHIGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRT 55
           MA T T  P++ QP  T          +R  TV+AF      R   R+     WR+AWR+
Sbjct: 2   MAATATTVPVRWQPPNTRFRIQPQPQMKRLMTVKAFGNGKGGRDMDRV-----WREAWRS 56

Query: 56  ANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDF 115
           AN+GFE+ VF+AKKTAERIDR+YS+SRRL++ AR AA RARE+DREF I  R+R+F MDF
Sbjct: 57  ANDGFERFVFEAKKTAERIDRRYSLSRRLSAVARAAADRAREIDREFEIGQRYRAFSMDF 116

Query: 116 SRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVA 175
            RNWP+YRKQLN+FL++P+G+SFAT+FF+WFALSGWLFRILI+ATWVLP A PLLIGT+A
Sbjct: 117 QRNWPKYRKQLNNFLDSPVGKSFATLFFIWFALSGWLFRILIIATWVLPFAGPLLIGTLA 176

Query: 176 NNFVIK 181
           N  VIK
Sbjct: 177 NTIVIK 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727667|ref|NP_001235377.1| uncharacterized protein LOC100306460 [Glycine max] gi|255628613|gb|ACU14651.1| unknown [Glycine max]

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 112/185 (60%), Positives = 136/185 (73%), Gaps = 17/185 (9%)

Query: 1   MATT--LTWQPLQLQPKTTLHIGRRRAATVRAFRRS--DFDRFARRMTSGEAWRDAWRTA 56
           MATT  + WQP    P     I  +RA  V+AF +   D DR          W +AWR+A
Sbjct: 2   MATTAPVRWQP----PNIRFRIEPKRAMRVKAFGKGGRDMDR---------VWSEAWRSA 48

Query: 57  NNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFS 116
           N+GFE+ VF+AKKTAERIDR+YS+SRRL+S AR AA RARE+DREF I  R+R+  +DF 
Sbjct: 49  NDGFERFVFEAKKTAERIDRRYSLSRRLSSVARAAADRAREIDREFEIGQRYRTLSIDFQ 108

Query: 117 RNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVAN 176
           RNWP+YRKQL DFL++PLG+SFAT+ F+W ALSGWLFRILI+ATWVLP A PLLIGT+AN
Sbjct: 109 RNWPKYRKQLKDFLDSPLGKSFATLLFIWLALSGWLFRILIIATWVLPFAGPLLIGTLAN 168

Query: 177 NFVIK 181
             VIK
Sbjct: 169 TLVIK 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414867828|tpg|DAA46385.1| TPA: hypothetical protein ZEAMMB73_929009 [Zea mays]

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 127/190 (66%), Gaps = 20/190 (10%)

Query: 1   MATTLTWQPLQLQPKTTLHIGRRR-----AATV---RAFRRSDFDRFARRMTSGEAWRDA 52
           MAT   W    LQP T   +  RR     AATV   RAF R+DFD F RR         A
Sbjct: 24  MATLARWH---LQPPTARPLAHRRRIPRRAATVVSPRAFSRADFDGFVRR---------A 71

Query: 53  WRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFR 112
           W+ AN G E+  F+A++ A+R+D ++S+SRRL  A+R A  RA E+D EF I  RWRSF 
Sbjct: 72  WQGANAGAERFAFEARQAAQRLDSRFSISRRLADASRAARARAVEIDAEFGIGRRWRSFS 131

Query: 113 MDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIG 172
           +DFSRNWPRYR+ +NDF+ TP+GR+ ATIFFLW ALSGWLFRI I  T+VLP AAPLL+G
Sbjct: 132 VDFSRNWPRYRRDINDFMGTPIGRALATIFFLWLALSGWLFRIFIFGTFVLPFAAPLLLG 191

Query: 173 TVANNFVIKM 182
           T AN   I++
Sbjct: 192 TFANRVAIEV 201

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2054972	248	AT2G44870 "AT2G44870" [Arabido	0.485	0.552	0.773	1.6e-54

TAIR|locus:2054972 AT2G44870 "AT2G44870" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 106/137 (77%), Positives = 122/137 (89%)

Query:    45 SGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAI 104
             SG+AWRDAWR+AN+GFEQ VF+AKKTAERIDRQY+VSRR +SAA +AA RARE+DREF I
Sbjct:    44 SGKAWRDAWRSANDGFEQFVFEAKKTAERIDRQYAVSRRFSSAASSAADRAREIDREFGI 103

Query:   105 SVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLP 164
             + R R+   DFSRN+P+YRKQ + FLNTPLG SFATIFFLWFALSGWLFR++I+ATWVLP
Sbjct:   104 TPRVRTVSADFSRNFPKYRKQFSAFLNTPLGGSFATIFFLWFALSGWLFRVIIIATWVLP 163

Query:   165 IAAPLLIGTVANNFVIK 181
             IA PLLIG VANNFVIK
Sbjct:   164 IAGPLLIGAVANNFVIK 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.134   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      282       237   0.00090  113 3  11 22  0.47    32
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  193 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.02u 0.09s 17.11t   Elapsed:  00:00:01
  Total cpu time:  17.02u 0.09s 17.11t   Elapsed:  00:00:01
  Start:  Fri May 10 03:40:35 2013   End:  Fri May 10 03:40:36 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_2000506 annotation not avaliable (247 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PLN03120	260	nucleic acid binding protein; Provisional	89.29
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	81.35
PF14257	262	DUF4349: Domain of unknown function (DUF4349)	80.11

>PLN03120 nucleic acid binding protein; Provisional

Probab=89.29  E-value=0.43  Score=44.48  Aligned_cols=52  Identities=15%  Similarity=0.319  Sum_probs=44.4

Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHhHHhhhhhhhh
Q 023461           66 DAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSR  117 (282)
Q Consensus        66 EARktA~rlDr~YsVSrR~A~Aar~A~erArEIDrefgIrrR~R~fs~Df~R  117 (282)
                      .|......+|++|-+|.|++.-.-.+.|++++||++|+|.-+..++..=..+
T Consensus       140 ~a~a~v~~~d~k~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~  191 (260)
T PLN03120        140 TASAKVASLDKKIGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQ  191 (260)
T ss_pred             HHHHHHHhhhhhcCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHH
Confidence            3455677899999999999988889999999999999999999886655443

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.35  E-value=0.84  Score=30.90  Aligned_cols=32  Identities=19%  Similarity=0.039  Sum_probs=21.0

Q ss_pred             hcccccccceeeeecceeccceEEEEeeecccccccc
Q 023461          182 MAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPR  218 (282)
Q Consensus       182 gaCP~ck~~~~~~ig~~~~~~q~v~~r~~rg~v~~pr  218 (282)
                      |.||+|+...   |=-|---|+. +|..| |.|+.-.
T Consensus         1 m~Cp~Cg~~~---~~~D~~~g~~-vC~~C-G~Vl~e~   32 (43)
T PF08271_consen    1 MKCPNCGSKE---IVFDPERGEL-VCPNC-GLVLEEN   32 (43)
T ss_dssp             ESBTTTSSSE---EEEETTTTEE-EETTT--BBEE-T
T ss_pred             CCCcCCcCCc---eEEcCCCCeE-ECCCC-CCEeecc
Confidence            5799999987   2223333666 89999 8877643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF14257 DUF4349: Domain of unknown function (DUF4349)

Probab=80.11  E-value=3.5  Score=36.38  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=15.5

Q ss_pred             cchhHHHHhhhcchHHHHHHHHHhHHHHHhH
Q 023461           34 SDFDRFARRMTSGEAWRDAWRTANNGFEQLV   64 (282)
Q Consensus        34 ~d~D~~a~r~~sg~awR~AwRsAN~gfEq~~   64 (282)
                      ..||.|...+.+...=..-.-++.|..|++.
T Consensus       105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~  135 (262)
T PF14257_consen  105 DKFDSFLDELSELGKVTSRNISSEDVTEQYV  135 (262)
T ss_pred             HHHHHHHHHHhccCceeeeeccccchHHHHH
Confidence            5677777776432221222234455555554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00